BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12206
(164 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
Length = 721
Score = 123 bits (309), Expect = 4e-29, Method: Composition-based stats.
Identities = 73/160 (45%), Positives = 92/160 (57%), Gaps = 35/160 (21%)
Query: 37 QGNMKILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKL 96
+G M+ +I L +GN GLGFSIAGG N HI D I++TKI+ GGAA DGRL+V D +
Sbjct: 55 EGEMEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSI 114
Query: 97 -----IAVRNSTSED-----------------KRASPG-----IFLC--------NIAGG 121
+ VR T +R P I L +IAGG
Sbjct: 115 LFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIAGG 174
Query: 122 IGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRN 161
+GNQHIPGDN IYVTKI++GGAA DGRLQ+GDK++AV +
Sbjct: 175 VGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNS 214
Score = 107 bits (267), Expect = 3e-24, Method: Composition-based stats.
Identities = 50/80 (62%), Positives = 65/80 (81%), Gaps = 3/80 (3%)
Query: 27 MYVRRKKVTRQGNMKILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQV 86
+YV R+K + K+++I+L+KG KGLGFSIAGG+GNQHIPGDN IYVTKI++GGAA
Sbjct: 143 LYVMRRKPPAE---KVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHK 199
Query: 87 DGRLQVGDKLIAVRNSTSED 106
DGRLQ+GDK++AV + ED
Sbjct: 200 DGRLQIGDKILAVNSVGLED 219
Score = 41.6 bits (96), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 11/62 (17%)
Query: 49 KGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV-----RNST 103
+G+ GLGF+I GG + GI+++ I+ GG A + G L+ GD++++V RN++
Sbjct: 315 RGSTGLGFNIVGGEDGE------GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNAS 368
Query: 104 SE 105
E
Sbjct: 369 HE 370
Score = 31.2 bits (69), Expect = 0.27, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 7/52 (13%)
Query: 108 RASPGIFLCNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
R S G+ NI GG + GI+++ I+ GG A + G L+ GD++++V
Sbjct: 315 RGSTGLGF-NIVGGEDGE------GIFISFILAGGPADLSGELRKGDQILSV 359
>pdb|3GSL|A Chain A, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
pdb|3GSL|B Chain B, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
Length = 196
Score = 118 bits (295), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/160 (44%), Positives = 91/160 (56%), Gaps = 35/160 (21%)
Query: 37 QGNMKILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKL 96
G+M+ +I L +GN GLGFSIAGG N HI D I++TKI+ GGAA DGRL+V D +
Sbjct: 1 SGSMEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSI 60
Query: 97 -----IAVRNSTSED-----------------KRASPGIFLC-------------NIAGG 121
+ VR T +R P + +IAGG
Sbjct: 61 LFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIAGG 120
Query: 122 IGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRN 161
+GNQHIPGDN IYVTKI++GGAA DGRLQ+GDK++AV +
Sbjct: 121 VGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNS 160
Score = 104 bits (259), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 50/80 (62%), Positives = 65/80 (81%), Gaps = 3/80 (3%)
Query: 27 MYVRRKKVTRQGNMKILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQV 86
+YV R+K + K+++I+L+KG KGLGFSIAGG+GNQHIPGDN IYVTKI++GGAA
Sbjct: 89 LYVMRRKPPAE---KVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHK 145
Query: 87 DGRLQVGDKLIAVRNSTSED 106
DGRLQ+GDK++AV + ED
Sbjct: 146 DGRLQIGDKILAVNSVGLED 165
>pdb|3ZRT|A Chain A, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|B Chain B, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|C Chain C, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|D Chain D, Crystal Structure Of Human Psd-95 Pdz1-2
Length = 199
Score = 118 bits (295), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/160 (44%), Positives = 92/160 (57%), Gaps = 35/160 (21%)
Query: 37 QGNMKILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKL 96
+G+M+ +I L +GN GLGFSIAGG N HI D I++TKI+ GGAA DGRL+V D +
Sbjct: 8 RGSMEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSI 67
Query: 97 -----IAVRNSTSED-----------------KRASPGIFLC-------------NIAGG 121
+ VR T +R P + +IAGG
Sbjct: 68 LFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIAGG 127
Query: 122 IGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRN 161
+GNQHIPGDN IYVTKI++GGAA DGRLQ+GDK++AV +
Sbjct: 128 VGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNS 167
Score = 103 bits (258), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 50/80 (62%), Positives = 65/80 (81%), Gaps = 3/80 (3%)
Query: 27 MYVRRKKVTRQGNMKILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQV 86
+YV R+K + K+++I+L+KG KGLGFSIAGG+GNQHIPGDN IYVTKI++GGAA
Sbjct: 96 LYVMRRKPPAE---KVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHK 152
Query: 87 DGRLQVGDKLIAVRNSTSED 106
DGRLQ+GDK++AV + ED
Sbjct: 153 DGRLQIGDKILAVNSVGLED 172
>pdb|2KA9|A Chain A, Solution Structure Of Psd-95 Pdz12 Complexed With Cypin
Peptide
Length = 189
Score = 115 bits (288), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/157 (44%), Positives = 89/157 (56%), Gaps = 35/157 (22%)
Query: 40 MKILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKL--- 96
M+ +I L +GN GLGFSIAGG N HI D I++TKI+ GGAA DGRL+V D +
Sbjct: 1 MEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFV 60
Query: 97 --IAVRNSTSED-----------------KRASPGIFLC-------------NIAGGIGN 124
+ VR T +R P + +IAGG+GN
Sbjct: 61 NEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIAGGVGN 120
Query: 125 QHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRN 161
QHIPGDN IYVTKI++GGAA DGRLQ+GDK++AV +
Sbjct: 121 QHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNS 157
Score = 103 bits (258), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 50/80 (62%), Positives = 65/80 (81%), Gaps = 3/80 (3%)
Query: 27 MYVRRKKVTRQGNMKILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQV 86
+YV R+K + K+++I+L+KG KGLGFSIAGG+GNQHIPGDN IYVTKI++GGAA
Sbjct: 86 LYVMRRKPPAE---KVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHK 142
Query: 87 DGRLQVGDKLIAVRNSTSED 106
DGRLQ+GDK++AV + ED
Sbjct: 143 DGRLQIGDKILAVNSVGLED 162
>pdb|2FE5|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human
Dlg3
Length = 94
Score = 105 bits (261), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/75 (64%), Positives = 62/75 (82%)
Query: 39 NMKILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIA 98
+M I+++ L+KG KGLGFSIAGGIGNQHIPGDN IY+TKI++GGAAQ DGRLQ+GD+L+A
Sbjct: 1 SMTIMEVNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLA 60
Query: 99 VRNSTSEDKRASPGI 113
V N+ +D R +
Sbjct: 61 VNNTNLQDVRHEEAV 75
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/46 (76%), Positives = 43/46 (93%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNS 162
+IAGGIGNQHIPGDN IY+TKI++GGAAQ DGRLQ+GD+L+AV N+
Sbjct: 19 SIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNT 64
>pdb|2BYG|A Chain A, 2nd Pdz Domain Of Discs Large Homologue 2
Length = 117
Score = 103 bits (256), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 48/68 (70%), Positives = 59/68 (86%)
Query: 39 NMKILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIA 98
+M +++I+L KG KGLGFSIAGG+GNQHIPGDN IYVTKI+DGGAAQ DGRLQVGD+L+
Sbjct: 22 SMTVVEIKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLM 81
Query: 99 VRNSTSED 106
V N + E+
Sbjct: 82 VNNYSLEE 89
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/45 (80%), Positives = 41/45 (91%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRN 161
+IAGG+GNQHIPGDN IYVTKI+DGGAAQ DGRLQVGD+L+ V N
Sbjct: 40 SIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNN 84
>pdb|4G69|A Chain A, Structure Of The Human Discs Large 1 Pdz2 - Adenomatous
Polyposis Coli Cytoskeletal Polarity Complex
Length = 100
Score = 102 bits (253), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/76 (65%), Positives = 62/76 (81%), Gaps = 4/76 (5%)
Query: 31 RKKVTRQGNMKILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRL 90
RK V+ KI++I+L+KG KGLGFSIAGG+GNQHIPGDN IYVTKI++GGAA DG+L
Sbjct: 3 RKPVSE----KIMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKL 58
Query: 91 QVGDKLIAVRNSTSED 106
Q+GDKL+AV N E+
Sbjct: 59 QIGDKLLAVNNVCLEE 74
Score = 76.6 bits (187), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 34/45 (75%), Positives = 41/45 (91%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRN 161
+IAGG+GNQHIPGDN IYVTKI++GGAA DG+LQ+GDKL+AV N
Sbjct: 25 SIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNN 69
>pdb|3RL8|A Chain A, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|B Chain B, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|C Chain C, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|D Chain D, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|E Chain E, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
Length = 105
Score = 101 bits (252), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 47/66 (71%), Positives = 58/66 (87%)
Query: 41 KILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVR 100
KI++I+L+KG KGLGFSIAGG+GNQHIPGDN IYVTKI++GGAA DG+LQ+GDKL+AV
Sbjct: 11 KIMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVN 70
Query: 101 NSTSED 106
N E+
Sbjct: 71 NVCLEE 76
Score = 76.6 bits (187), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 34/45 (75%), Positives = 41/45 (91%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRN 161
+IAGG+GNQHIPGDN IYVTKI++GGAA DG+LQ+GDKL+AV N
Sbjct: 27 SIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNN 71
>pdb|2AWX|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
pdb|2AWX|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
Length = 105
Score = 101 bits (251), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 46/66 (69%), Positives = 59/66 (89%)
Query: 41 KILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVR 100
KI++I+L+KG KGLGFSIAGG+GNQHIPGDN IYVTKI++GGAA DG+LQ+GDKL+AV
Sbjct: 3 KIMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVN 62
Query: 101 NSTSED 106
+ + E+
Sbjct: 63 SVSLEE 68
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/45 (73%), Positives = 41/45 (91%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRN 161
+IAGG+GNQHIPGDN IYVTKI++GGAA DG+LQ+GDKL+AV +
Sbjct: 19 SIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNS 63
>pdb|2X7Z|A Chain A, Crystal Structure Of The Sap97 Pdz2 I342w C378a Mutant
Protein Domain
Length = 99
Score = 100 bits (249), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 46/66 (69%), Positives = 57/66 (86%)
Query: 41 KILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVR 100
KI++I+L+KG KGLGFSIAGG+GNQH PGDN IYVTKI++GGAA DG+LQ+GDKL+AV
Sbjct: 8 KIMEIKLIKGPKGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVN 67
Query: 101 NSTSED 106
N E+
Sbjct: 68 NVALEE 73
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/45 (73%), Positives = 40/45 (88%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRN 161
+IAGG+GNQH PGDN IYVTKI++GGAA DG+LQ+GDKL+AV N
Sbjct: 24 SIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNN 68
>pdb|2G2L|A Chain A, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
pdb|2G2L|B Chain B, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
Length = 105
Score = 100 bits (248), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 46/66 (69%), Positives = 58/66 (87%)
Query: 41 KILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVR 100
KI++I+L+KG KGLGFSIAGG+GNQHIPGDN IYVTKI++GGAA DG+LQ+GDKL+AV
Sbjct: 3 KIMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVN 62
Query: 101 NSTSED 106
+ E+
Sbjct: 63 SVCLEE 68
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/45 (73%), Positives = 41/45 (91%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRN 161
+IAGG+GNQHIPGDN IYVTKI++GGAA DG+LQ+GDKL+AV +
Sbjct: 19 SIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNS 63
>pdb|1QLC|A Chain A, Solution Structure Of The Second Pdz Domain Of
Postsynaptic Density-95
Length = 95
Score = 99.4 bits (246), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 46/66 (69%), Positives = 58/66 (87%)
Query: 41 KILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVR 100
K+++I+L+KG KGLGFSIAGG+GNQHIPGDN IYVTKI++GGAA DGRLQ+GDK++AV
Sbjct: 3 KVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVN 62
Query: 101 NSTSED 106
+ ED
Sbjct: 63 SVGLED 68
Score = 73.9 bits (180), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 33/45 (73%), Positives = 41/45 (91%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRN 161
+IAGG+GNQHIPGDN IYVTKI++GGAA DGRLQ+GDK++AV +
Sbjct: 19 SIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNS 63
>pdb|2AWU|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
pdb|2AWU|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
Length = 105
Score = 99.4 bits (246), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 46/66 (69%), Positives = 58/66 (87%)
Query: 41 KILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVR 100
KI++I+L+KG KGLGFSIAGG+GNQHIPGDN IYVTKI++GGAA DG+LQ+GDKL+AV
Sbjct: 3 KIMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVN 62
Query: 101 NSTSED 106
+ E+
Sbjct: 63 SVGLEE 68
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/45 (73%), Positives = 41/45 (91%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRN 161
+IAGG+GNQHIPGDN IYVTKI++GGAA DG+LQ+GDKL+AV +
Sbjct: 19 SIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNS 63
>pdb|2OQS|A Chain A, Structure Of The HdlgSAP97 PDZ2 IN COMPLEX WITH HPV-18
Papillomavirus E6 Peptide
Length = 97
Score = 97.8 bits (242), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 45/64 (70%), Positives = 56/64 (87%)
Query: 43 LDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNS 102
++I+L+KG KGLGFSIAGG+GNQHIPGDN IYVTKI++GGAA DG+LQ+GDKL+AV N
Sbjct: 1 MEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNV 60
Query: 103 TSED 106
E+
Sbjct: 61 CLEE 64
Score = 76.3 bits (186), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 34/45 (75%), Positives = 41/45 (91%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRN 161
+IAGG+GNQHIPGDN IYVTKI++GGAA DG+LQ+GDKL+AV N
Sbjct: 15 SIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNN 59
>pdb|2AWW|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
With C-Terminal Glur-A Peptide
pdb|2AWW|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
With C-Terminal Glur-A Peptide
Length = 105
Score = 97.4 bits (241), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 45/66 (68%), Positives = 57/66 (86%)
Query: 41 KILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVR 100
KI++I+L+KG KGLGFSIAGG+GNQHIPGDN IYVT I++GGAA DG+LQ+GDKL+AV
Sbjct: 3 KIMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTSIVEGGAAHKDGKLQIGDKLLAVN 62
Query: 101 NSTSED 106
+ E+
Sbjct: 63 SVGLEE 68
Score = 73.2 bits (178), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 32/45 (71%), Positives = 40/45 (88%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRN 161
+IAGG+GNQHIPGDN IYVT I++GGAA DG+LQ+GDKL+AV +
Sbjct: 19 SIAGGVGNQHIPGDNSIYVTSIVEGGAAHKDGKLQIGDKLLAVNS 63
>pdb|2I0L|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C-
Terminal Peptide Of Hpv18 E6.
pdb|2I0L|B Chain B, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 84
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 44/63 (69%), Positives = 55/63 (87%)
Query: 44 DIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNST 103
+I+L+KG KGLGFSIAGG+GNQHIPGDN IYVTKI++GGAA DG+LQ+GDKL+AV +
Sbjct: 1 EIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVC 60
Query: 104 SED 106
E+
Sbjct: 61 LEE 63
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 33/45 (73%), Positives = 41/45 (91%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRN 161
+IAGG+GNQHIPGDN IYVTKI++GGAA DG+LQ+GDKL+AV +
Sbjct: 14 SIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNS 58
>pdb|4AMH|A Chain A, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
pdb|4AMH|B Chain B, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
Length = 106
Score = 90.5 bits (223), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 41/58 (70%), Positives = 50/58 (86%)
Query: 49 KGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTSED 106
+G+KGLGFSIAGG+GNQH PGDN IYVTKI++GGAA DG+LQ+GDKL+AV N E+
Sbjct: 10 RGSKGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEE 67
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/54 (66%), Positives = 43/54 (79%), Gaps = 1/54 (1%)
Query: 108 RASPGIFLCNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRN 161
R S G+ IAGG+GNQH PGDN IYVTKI++GGAA DG+LQ+GDKL+AV N
Sbjct: 10 RGSKGLGFS-IAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNN 62
>pdb|2I1N|A Chain A, Crystal Structure Of The 1st Pdz Domain Of Human Dlg3
pdb|2I1N|B Chain B, Crystal Structure Of The 1st Pdz Domain Of Human Dlg3
Length = 102
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 44/60 (73%)
Query: 40 MKILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
K +I L +GN GLGFSIAGGI N H+P D GI++TKI+ GGAA +DGRL V D ++ V
Sbjct: 3 FKYEEIVLERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRV 62
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 33/43 (76%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+IAGGI N H+P D GI++TKI+ GGAA +DGRL V D ++ V
Sbjct: 20 SIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRV 62
>pdb|1ZOK|A Chain A, Pdz1 Domain Of Synapse Associated Protein 97
Length = 93
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 48/79 (60%)
Query: 44 DIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNST 103
+I L +GN GLGFSIAGG N HI D+ I++TKI+ GGAA DGRL+V D ++ V +
Sbjct: 4 EITLERGNSGLGFSIAGGTDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRVNEAD 63
Query: 104 SEDKRASPGIFLCNIAGGI 122
D S + AG I
Sbjct: 64 VRDVTHSKAVEALKEAGSI 82
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 32/46 (69%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNS 162
+IAGG N HI D+ I++TKI+ GGAA DGRL+V D ++ V +
Sbjct: 17 SIAGGTDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRVNEA 62
>pdb|1IU0|A Chain A, The First Pdz Domain Of Psd-95
pdb|1IU2|A Chain A, The First Pdz Domain Of Psd-95
Length = 91
Score = 67.0 bits (162), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 48/83 (57%)
Query: 40 MKILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
M+ +I L +GN GLGFSIAGG N HI D I++TKI+ GGAA DGRL+V D ++ V
Sbjct: 1 MEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFV 60
Query: 100 RNSTSEDKRASPGIFLCNIAGGI 122
+ S + AG I
Sbjct: 61 NEVDVREVTHSAAVEALKEAGSI 83
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 30/43 (69%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+IAGG N HI D I++TKI+ GGAA DGRL+V D ++ V
Sbjct: 18 SIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFV 60
>pdb|3RL7|B Chain B, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|A Chain A, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|C Chain C, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|D Chain D, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|E Chain E, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|F Chain F, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
Length = 107
Score = 66.6 bits (161), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 47/79 (59%)
Query: 44 DIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNST 103
+I L +GN GLGFSIAGG N HI D+ I++TKI+ GGAA DGRL+V D ++ V
Sbjct: 14 EITLERGNSGLGFSIAGGTDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRVNEVD 73
Query: 104 SEDKRASPGIFLCNIAGGI 122
D S + AG I
Sbjct: 74 VRDVTHSKAVEALKEAGSI 92
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 31/43 (72%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+IAGG N HI D+ I++TKI+ GGAA DGRL+V D ++ V
Sbjct: 27 SIAGGTDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRV 69
>pdb|2WL7|A Chain A, Crystal Structure Of The Psd93 Pdz1 Domain
Length = 102
Score = 66.2 bits (160), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/61 (54%), Positives = 42/61 (68%)
Query: 39 NMKILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIA 98
+ +I L +GN GLGFSIAGG N HI D GI++TKI+ GGAA DGRL+V D ++
Sbjct: 7 EFEFEEITLERGNSGLGFSIAGGTDNPHIGDDPGIFITKIIPGGAAAEDGRLRVNDCILR 66
Query: 99 V 99
V
Sbjct: 67 V 67
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 31/43 (72%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+IAGG N HI D GI++TKI+ GGAA DGRL+V D ++ V
Sbjct: 25 SIAGGTDNPHIGDDPGIFITKIIPGGAAAEDGRLRVNDCILRV 67
>pdb|1RGR|A Chain A, Cyclic Peptides Targeting Pdz Domains Of Psd-95:
Structural Basis For Enhanced Affinity And Enzymatic
Stability
Length = 99
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 46/79 (58%)
Query: 44 DIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNST 103
+I L +GN GLGFSIAGG N HI D I++TKI+ GGAA DGRL+V D ++ V
Sbjct: 4 EITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVD 63
Query: 104 SEDKRASPGIFLCNIAGGI 122
+ S + AG I
Sbjct: 64 VREVTHSAAVEALKEAGSI 82
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 30/43 (69%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+IAGG N HI D I++TKI+ GGAA DGRL+V D ++ V
Sbjct: 17 SIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFV 59
>pdb|1KEF|A Chain A, Pdz1 Of Sap90
Length = 93
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 46/79 (58%)
Query: 44 DIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNST 103
+I L +GN GLGFSIAGG N HI D I++TKI+ GGAA DGRL+V D ++ V
Sbjct: 4 EITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVD 63
Query: 104 SEDKRASPGIFLCNIAGGI 122
+ S + AG I
Sbjct: 64 VREVTHSAAVEALKEAGSI 82
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 30/43 (69%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+IAGG N HI D I++TKI+ GGAA DGRL+V D ++ V
Sbjct: 17 SIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFV 59
>pdb|2JIN|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2
Binding Protein
Length = 102
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 42/56 (75%)
Query: 44 DIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
+I L +G GLGF+I GG Q++ D+GIYV++I + GAA +DGRLQ GDK+++V
Sbjct: 12 EINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSV 67
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 34/49 (69%)
Query: 111 PGIFLCNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
P NI GG Q++ D+GIYV++I + GAA +DGRLQ GDK+++V
Sbjct: 19 PSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSV 67
>pdb|2JIK|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2
Binding Protein
pdb|2JIK|B Chain B, Crystal Structure Of Pdz Domain Of Synaptojanin-2
Binding Protein
Length = 101
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 42/56 (75%)
Query: 44 DIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
+I L +G GLGF+I GG Q++ D+GIYV++I + GAA +DGRLQ GDK+++V
Sbjct: 10 EINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSV 65
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 34/49 (69%)
Query: 111 PGIFLCNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
P NI GG Q++ D+GIYV++I + GAA +DGRLQ GDK+++V
Sbjct: 17 PSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSV 65
>pdb|2ENO|A Chain A, Solution Structure Of The Pdz Domain From Human
Synaptojanin 2 Binding Protein
Length = 120
Score = 63.5 bits (153), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 42/56 (75%)
Query: 44 DIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
+I L +G GLGF+I GG Q++ D+GIYV++I + GAA +DGRLQ GDK+++V
Sbjct: 20 EINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSV 75
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 34/49 (69%)
Query: 111 PGIFLCNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
P NI GG Q++ D+GIYV++I + GAA +DGRLQ GDK+++V
Sbjct: 27 PSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSV 75
>pdb|1WHA|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Scribble (Kiaa0147 Protein)
Length = 105
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 40/54 (74%), Gaps = 1/54 (1%)
Query: 47 LVKGNKGLGFSIAGGIGN-QHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
L + +GLGFSIAGG G+ + GD GI+V++I +GGAA G LQVGD+++++
Sbjct: 13 LARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSI 66
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Query: 117 NIAGGIGN-QHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+IAGG G+ + GD GI+V++I +GGAA G LQVGD+++++
Sbjct: 23 SIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSI 66
>pdb|2FNE|A Chain A, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
pdb|2FNE|B Chain B, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
pdb|2FNE|C Chain C, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
Length = 117
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 45 IELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTS 104
I L +G GLGFSI GG G+ H GD IYV + GAA DGRL+ GD++IAV +
Sbjct: 29 ITLERGPDGLGFSIVGGYGSPH--GDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSL 86
Query: 105 E 105
E
Sbjct: 87 E 87
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+I GG G+ H GD IYV + GAA DGRL+ GD++IAV
Sbjct: 41 SIVGGYGSPH--GDLPIYVKTVFAKGAASEDGRLKRGDQIIAV 81
>pdb|2IWN|A Chain A, 3rd Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
Length = 97
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 41 KILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
+ D+EL K +GLG +IAG IG++ + +GI+V I A + DGR+Q+GD++IAV
Sbjct: 4 ETFDVELTKNVQGLGITIAGYIGDKKLE-PSGIFVKSITKSSAVEHDGRIQIGDQIIAV 61
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
IAG IG++ + +GI+V I A + DGR+Q+GD++IAV
Sbjct: 20 TIAGYIGDKKLE-PSGIFVKSITKSSAVEHDGRIQIGDQIIAV 61
>pdb|2FN5|A Chain A, Nmr Structure Of The Neurabin Pdz Domain (502-594)
Length = 94
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 38 GNMKILDIELVKGNKGLGFSIAG-GIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKL 96
G+M++ +EL K GLG SI G G+G GI+V + +GGAAQ DGR+QV D++
Sbjct: 1 GHMELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQI 60
Query: 97 IAV 99
+ V
Sbjct: 61 VEV 63
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 22/28 (78%)
Query: 132 GIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
GI+V + +GGAAQ DGR+QV D+++ V
Sbjct: 36 GIFVKTVTEGGAAQRDGRIQVNDQIVEV 63
>pdb|2KOJ|A Chain A, Solution Structure Of Mouse Par-3 Pdz2 (Residues
450-558)
Length = 111
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 41 KILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
K L+I+L KG +GLGFSI + I G IYV I+ GAA DGRL+ GD+LI V
Sbjct: 11 KRLNIQLKKGTEGLGFSITSR--DVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEV 67
Score = 33.9 bits (76), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 21/33 (63%)
Query: 127 IPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
I G IYV I+ GAA DGRL+ GD+LI V
Sbjct: 35 IGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEV 67
>pdb|2OGP|A Chain A, Solution Structure Of The Second Pdz Domain Of Par-3
Length = 97
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 41 KILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
K L+I+L KG +GLGFSI + I G IYV I+ GAA DGRL+ GD+LI V
Sbjct: 5 KRLNIQLKKGTEGLGFSITSR--DVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEV 61
Score = 33.5 bits (75), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 21/33 (63%)
Query: 127 IPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
I G IYV I+ GAA DGRL+ GD+LI V
Sbjct: 29 IGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEV 61
>pdb|3HVQ|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Neurabin
pdb|3HVQ|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Neurabin
Length = 170
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Query: 28 YVRRKKVTRQGNMKILDIELVKGNKGLGFSIAG-GIGNQHIPGDNGIYVTKIMDGGAAQV 86
Y K+V + +++ +EL K GLG SI G G+G GI+V + +GGAAQ
Sbjct: 70 YELEKRVEK---LELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQR 126
Query: 87 DGRLQVGDKLIAV 99
DGR+QV D+++ V
Sbjct: 127 DGRIQVNDQIVEV 139
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 22/28 (78%)
Query: 132 GIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
GI+V + +GGAAQ DGR+QV D+++ V
Sbjct: 112 GIFVKTVTEGGAAQRDGRIQVNDQIVEV 139
>pdb|2KOM|A Chain A, Solution Structure Of Humar Par-3b Pdz2 (Residues
451-549)
Length = 121
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 41 KILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
K L+I+L KG +GLGFSI + I G IYV I+ GAA DGRL+ GD+LI V
Sbjct: 30 KRLNIQLKKGTEGLGFSITSR--DVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEV 86
Score = 33.5 bits (75), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 21/33 (63%)
Query: 127 IPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
I G IYV I+ GAA DGRL+ GD+LI V
Sbjct: 54 IGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEV 86
>pdb|2G5M|B Chain B, Spinophilin Pdz Domain
Length = 113
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 38 GNMKILDIELVKGNKGLGFSIAG-GIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKL 96
G+M++ +EL K ++GLG SI G G G GI+V + +GGAA DGR+QV D L
Sbjct: 1 GHMELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLL 60
Query: 97 IAVRNST 103
+ V ++
Sbjct: 61 VEVDGTS 67
Score = 34.3 bits (77), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 132 GIYVTKIMDGGAAQVDGRLQVGDKLIAVRNST 163
GI+V + +GGAA DGR+QV D L+ V ++
Sbjct: 36 GIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTS 67
>pdb|3EGH|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1), The Pp1 Binding And Pdz Domains Of
Spinophilin And The Small Natural Molecular Toxin
Nodularin-R
pdb|3EGH|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1), The Pp1 Binding And Pdz Domains Of
Spinophilin And The Small Natural Molecular Toxin
Nodularin-R
Length = 170
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 28 YVRRKKVTRQGNMKILDIELVKGNKGLGFSIAG-GIGNQHIPGDNGIYVTKIMDGGAAQV 86
Y K+V R +++ +EL K ++GLG SI G G G GI+V + +GGAA
Sbjct: 70 YELEKRVER---LELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHR 126
Query: 87 DGRLQVGDKLIAV 99
DGR+QV D L+ V
Sbjct: 127 DGRIQVNDLLVEV 139
Score = 34.7 bits (78), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 132 GIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
GI+V + +GGAA DGR+QV D L+ V
Sbjct: 112 GIFVKTVTEGGAAHRDGRIQVNDLLVEV 139
>pdb|3EGG|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Spinophilin
pdb|3EGG|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Spinophilin
Length = 170
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 28 YVRRKKVTRQGNMKILDIELVKGNKGLGFSIAG-GIGNQHIPGDNGIYVTKIMDGGAAQV 86
Y K+V R +++ +EL K ++GLG SI G G G GI+V + +GGAA
Sbjct: 70 YELEKRVER---LELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHR 126
Query: 87 DGRLQVGDKLIAV 99
DGR+QV D L+ V
Sbjct: 127 DGRIQVNDLLVEV 139
Score = 34.7 bits (78), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 132 GIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
GI+V + +GGAA DGR+QV D L+ V
Sbjct: 112 GIFVKTVTEGGAAHRDGRIQVNDLLVEV 139
>pdb|1D5G|A Chain A, Solution Structure Of The Pdz2 Domain From Human
Phosphatase Hptp1e Complexed With A Peptide
Length = 96
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 42 ILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
I ++EL K + LG S+ GG+ G GIYV ++ GAA+ DGR+ GD+++AV
Sbjct: 6 IFEVELAKNDNSLGISVTGGVNTSVRHG--GIYVKAVIPQGAAESDGRIHKGDRVLAV 61
Score = 33.5 bits (75), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 132 GIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
GIYV ++ GAA+ DGR+ GD+++AV
Sbjct: 34 GIYVKAVIPQGAAESDGRIHKGDRVLAV 61
>pdb|3PDZ|A Chain A, Solution Structure Of The Pdz2 Domain From Human
Phosphatase Hptp1e
pdb|3LNX|A Chain A, Second Pdz Domain From Human Ptp1e
pdb|3LNX|B Chain B, Second Pdz Domain From Human Ptp1e
pdb|3LNX|C Chain C, Second Pdz Domain From Human Ptp1e
pdb|3LNX|D Chain D, Second Pdz Domain From Human Ptp1e
pdb|3LNX|E Chain E, Second Pdz Domain From Human Ptp1e
pdb|3LNX|F Chain F, Second Pdz Domain From Human Ptp1e
pdb|3LNY|A Chain A, Second Pdz Domain From Human Ptp1e In Complex With
Ra-Gef2 Peptide
Length = 96
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 42 ILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
I ++EL K + LG S+ GG+ G GIYV ++ GAA+ DGR+ GD+++AV
Sbjct: 6 IFEVELAKNDNSLGISVTGGVNTSVRHG--GIYVKAVIPQGAAESDGRIHKGDRVLAV 61
Score = 33.5 bits (75), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 132 GIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
GIYV ++ GAA+ DGR+ GD+++AV
Sbjct: 34 GIYVKAVIPQGAAESDGRIHKGDRVLAV 61
>pdb|1WF8|A Chain A, Solution Structure Of The Pdz Domain Of
SpinophilinNEURABINII PROTEIN
Length = 107
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 40 MKILDIELVKGNKGLGFSIAG-GIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIA 98
+++ +EL K GLG SI G G+G GI+V + +GGAAQ DGR+QV D+++
Sbjct: 8 LELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVE 67
Query: 99 V 99
V
Sbjct: 68 V 68
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 22/28 (78%)
Query: 132 GIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
GI+V + +GGAAQ DGR+QV D+++ V
Sbjct: 41 GIFVKTVTEGGAAQRDGRIQVNDQIVEV 68
>pdb|2KOH|A Chain A, Nmr Structure Of Mouse Par3-Pdz3 In Complex With
Ve-Cadherin C-Terminus
Length = 111
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Query: 50 GNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
G+ GLG S+ G ++ D GI+V I++GGAA DGRL+V D+LIAV
Sbjct: 19 GSAGLGVSVKGNRSKEN-HADLGIFVKSIINGGAASKDGRLRVNDQLIAV 67
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/30 (63%), Positives = 24/30 (80%)
Query: 130 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
D GI+V I++GGAA DGRL+V D+LIAV
Sbjct: 38 DLGIFVKSIINGGAASKDGRLRVNDQLIAV 67
>pdb|2K1Z|A Chain A, Solution Structure Of Par-3 Pdz3
pdb|2K20|A Chain A, Solution Structure Of Par-3 Pdz3 In Complex With Pten
Peptide
Length = 104
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Query: 50 GNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
G+ GLG S+ G ++ D GI+V I++GGAA DGRL+V D+LIAV
Sbjct: 16 GSAGLGVSVKGNRSKEN-HADLGIFVKSIINGGAASKDGRLRVNDQLIAV 64
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/30 (63%), Positives = 24/30 (80%)
Query: 130 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
D GI+V I++GGAA DGRL+V D+LIAV
Sbjct: 35 DLGIFVKSIINGGAASKDGRLRVNDQLIAV 64
>pdb|2DMZ|A Chain A, Solution Structure Of The Third Pdz Domain Of Human
Inad- Like Protein
Length = 129
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 40 MKILDIELV-KGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIA 98
+ ++ELV K + LG I G +G H +GIYV ++ G AA +G +QV DK++A
Sbjct: 14 FETYNVELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVA 73
Query: 99 V 99
V
Sbjct: 74 V 74
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 118 IAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
I G +G H +GIYV ++ G AA +G +QV DK++AV
Sbjct: 33 IVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAV 74
>pdb|1VJ6|A Chain A, Pdz2 From Ptp-Bl In Complex With The C-Terminal Ligand
From The Apc Protein
Length = 102
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 43 LDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNS 102
++EL K + LG S+ GG+ G GIYV I+ GAA+ DGR+ GD+++AV
Sbjct: 14 FEVELAKTDGSLGISVTGGVNTSVRHG--GIYVKAIIPKGAAESDGRIHKGDRVLAVNGV 71
Query: 103 TSE 105
+ E
Sbjct: 72 SLE 74
Score = 33.9 bits (76), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 132 GIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
GIYV I+ GAA+ DGR+ GD+++AV
Sbjct: 41 GIYVKAIIPKGAAESDGRIHKGDRVLAV 68
>pdb|2R4H|B Chain B, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|A Chain A, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|C Chain C, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
Length = 112
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 39 NMKILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIA 98
+M +EL +G KG GFS+ GG + D +YV ++ + G A+ G++++GD+++
Sbjct: 22 SMDFYTVELERGAKGFGFSLRGG---REYNMD--LYVLRLAEDGPAERSGKMRIGDEILE 76
Query: 99 VRNSTSEDKRASPGIFLCNIAG 120
+ T+++ + S I L G
Sbjct: 77 INGETTKNMKHSRAIELIKNGG 98
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 8/31 (25%), Positives = 21/31 (67%)
Query: 133 IYVTKIMDGGAAQVDGRLQVGDKLIAVRNST 163
+YV ++ + G A+ G++++GD+++ + T
Sbjct: 51 LYVLRLAEDGPAERSGKMRIGDEILEINGET 81
>pdb|1GM1|A Chain A, Second Pdz Domain (Pdz2) Of Ptp-Bl
Length = 94
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 43 LDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNS 102
++EL K + LG S+ GG+ G GIYV I+ GAA+ DGR+ GD+++AV
Sbjct: 6 FEVELAKTDGSLGISVTGGVNTSVRHG--GIYVKAIIPKGAAESDGRIHKGDRVLAVNGV 63
Query: 103 TSE 105
+ E
Sbjct: 64 SLE 66
Score = 33.9 bits (76), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 132 GIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
GIYV I+ GAA+ DGR+ GD+++AV
Sbjct: 33 GIYVKAIIPKGAAESDGRIHKGDRVLAV 60
>pdb|2DM8|A Chain A, Solution Structure Of The Eighth Pdz Domain Of Human Inad-
Like Protein
Length = 116
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 9/67 (13%)
Query: 45 IELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV----- 99
IE+ KG GLG SI GG + P N I + ++ + GAA DGRL GD+++ V
Sbjct: 21 IEISKGRSGLGLSIVGG---KDTP-LNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDL 76
Query: 100 RNSTSED 106
RNS+ E+
Sbjct: 77 RNSSHEE 83
Score = 29.6 bits (65), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
Query: 131 NGIYVTKIMDGGAAQVDGRLQVGDKLIAV-----RNSTR 164
N I + ++ + GAA DGRL GD+++ V RNS+
Sbjct: 43 NAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSH 81
>pdb|1UM1|A Chain A, Solution Structure Of Rsgi Ruh-007, Pdz Domain In Human
Cdna
Length = 110
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 42 ILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRN 101
+ +EL +G GLG + G+ + H+ G G+Y+ ++ G A DGRL +GD+++ V
Sbjct: 9 VFTVELERGPSGLGMGLIDGM-HTHL-GAPGLYIQTLLPGSPAAADGRLSLGDRILEVNG 66
Query: 102 ST 103
S+
Sbjct: 67 SS 68
Score = 34.3 bits (77), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 124 NQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNST 163
+ H+ G G+Y+ ++ G A DGRL +GD+++ V S+
Sbjct: 30 HTHL-GAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSS 68
>pdb|3JXT|A Chain A, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
pdb|3JXT|B Chain B, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
Length = 104
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 11/69 (15%)
Query: 47 LVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV-----RN 101
L KG+ GLGF+I GG + GI+V+ I+ GG A + G L+ GD++++V RN
Sbjct: 18 LHKGSTGLGFNIVGGEDGE------GIFVSFILAGGPADLSGELRRGDRILSVNGVNLRN 71
Query: 102 STSEDKRAS 110
+T E A+
Sbjct: 72 ATHEQAAAA 80
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 11/74 (14%)
Query: 97 IAVRNSTSEDKRASPGIFLCNIAGGIGNQHIPGDNG--IYVTKIMDGGAAQVDGRLQVGD 154
+A + T E ++ I L + G+G + G++G I+V+ I+ GG A + G L+ GD
Sbjct: 4 LAEEDFTREPRK----IILHKGSTGLGFNIVGGEDGEGIFVSFILAGGPADLSGELRRGD 59
Query: 155 KLIAV-----RNST 163
++++V RN+T
Sbjct: 60 RILSVNGVNLRNAT 73
>pdb|1UM7|A Chain A, Solution Structure Of The Third Pdz Domain Of Synapse-
Associated Protein 102
Length = 113
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 11/69 (15%)
Query: 47 LVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV-----RN 101
L KG+ GLGF+I GG + GI+V+ I+ GG A + G L+ GD++++V RN
Sbjct: 21 LHKGSTGLGFNIVGGEDGE------GIFVSFILAGGPADLSGELRRGDRILSVNGVNLRN 74
Query: 102 STSEDKRAS 110
+T E A+
Sbjct: 75 ATHEQAAAA 83
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 7/65 (10%)
Query: 106 DKRASPGIFLCNIAGGIGNQHIPGDNG--IYVTKIMDGGAAQVDGRLQVGDKLIAV---- 159
D R I L + G+G + G++G I+V+ I+ GG A + G L+ GD++++V
Sbjct: 12 DAREPRKIILHKGSTGLGFNIVGGEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVN 71
Query: 160 -RNST 163
RN+T
Sbjct: 72 LRNAT 76
>pdb|1UJU|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Human
Scribble (Kiaa0147 Protein)
Length = 111
Score = 42.7 bits (99), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Query: 40 MKILDIELVKGNKGLGFSIAGGI----GNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDK 95
++ L I+ G + LG SI GG GN P D GI+++K+ GAA DGRL+VG +
Sbjct: 10 LRELCIQKAPGER-LGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLR 68
Query: 96 LIAVRNST 103
L+ V +
Sbjct: 69 LLEVNQQS 76
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 120 GGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNST 163
G GN P D GI+++K+ GAA DGRL+VG +L+ V +
Sbjct: 33 GHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQS 76
>pdb|2DKR|A Chain A, Solution Structure Of The Pdz Domain From Human Lin-7
Homolog B
Length = 93
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 5/77 (6%)
Query: 45 IELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTS 104
+EL K ++GLGF+I GG Q+ P IY+++++ GG A G L+ GD+L++V +
Sbjct: 9 VELPKTDEGLGFNIMGGK-EQNSP----IYISRVIPGGVADRHGGLKRGDQLLSVNGVSV 63
Query: 105 EDKRASPGIFLCNIAGG 121
E ++ + L A G
Sbjct: 64 EGEQHEKAVELLKAAQG 80
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 5/43 (11%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
NI GG Q+ P IY+++++ GG A G L+ GD+L++V
Sbjct: 21 NIMGGK-EQNSP----IYISRVIPGGVADRHGGLKRGDQLLSV 58
>pdb|2AIN|A Chain A, Solution Structure Of The Af-6 Pdz Domain Complexed With
The C-Terminal Peptide From The Bcr Protein
Length = 93
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 38/61 (62%), Gaps = 7/61 (11%)
Query: 41 KILDIELVKGNKGLGFSI--AGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIA 98
+I+ + L K N G+G SI A G G + GIYV ++ GGAA VDGRL GD+L++
Sbjct: 5 EIITVTLKKQN-GMGLSIVAAKGAGQDKL----GIYVKSVVKGGAADVDGRLAAGDQLLS 59
Query: 99 V 99
V
Sbjct: 60 V 60
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 132 GIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
GIYV ++ GGAA VDGRL GD+L++V
Sbjct: 33 GIYVKSVVKGGAADVDGRLAAGDQLLSV 60
>pdb|1T2M|A Chain A, Solution Structure Of The Pdz Domain Of Af-6
Length = 101
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 38/61 (62%), Gaps = 7/61 (11%)
Query: 41 KILDIELVKGNKGLGFSI--AGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIA 98
+I+ + L K N G+G SI A G G + GIYV ++ GGAA VDGRL GD+L++
Sbjct: 5 EIITVTLKKQN-GMGLSIVAAKGAGQDKL----GIYVKSVVKGGAADVDGRLAAGDQLLS 59
Query: 99 V 99
V
Sbjct: 60 V 60
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 132 GIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
GIYV ++ GGAA VDGRL GD+L++V
Sbjct: 33 GIYVKSVVKGGAADVDGRLAAGDQLLSV 60
>pdb|3AXA|A Chain A, Crystal Structure Of Afadin Pdz Domain In Complex With
The C-Terminal Peptide From Nectin-3
pdb|3AXA|B Chain B, Crystal Structure Of Afadin Pdz Domain In Complex With
The C-Terminal Peptide From Nectin-3
Length = 106
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 38/61 (62%), Gaps = 7/61 (11%)
Query: 41 KILDIELVKGNKGLGFSI--AGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIA 98
+I+ + L K N G+G SI A G G + GIYV ++ GGAA VDGRL GD+L++
Sbjct: 11 EIITVTLKKQN-GMGLSIVAAKGAGQDKL----GIYVKSVVKGGAADVDGRLAAGDQLLS 65
Query: 99 V 99
V
Sbjct: 66 V 66
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 132 GIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
GIYV ++ GGAA VDGRL GD+L++V
Sbjct: 39 GIYVKSVVKGGAADVDGRLAAGDQLLSV 66
>pdb|1XZ9|A Chain A, Structure Of Af-6 Pdz Domain
pdb|2EXG|A Chain A, Making Protein-protein Interactions Drugable: Discovery
Of Low-molecular-weight Ligands For The Af6 Pdz Domain
Length = 101
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 38/61 (62%), Gaps = 7/61 (11%)
Query: 41 KILDIELVKGNKGLGFSI--AGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIA 98
+I+ + L K N G+G SI A G G + GIYV ++ GGAA VDGRL GD+L++
Sbjct: 11 EIITVTLKKQN-GMGLSIVAAKGAGQDKL----GIYVKSVVKGGAADVDGRLAAGDQLLS 65
Query: 99 V 99
V
Sbjct: 66 V 66
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 132 GIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
GIYV ++ GGAA VDGRL GD+L++V
Sbjct: 39 GIYVKSVVKGGAADVDGRLAAGDQLLSV 66
>pdb|2HE2|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
pdb|2HE2|B Chain B, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
Length = 102
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 11/77 (14%)
Query: 39 NMKILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIA 98
+M+ + L KG+ GLGF+I GG + GI+V+ I+ GG A + G LQ GD++++
Sbjct: 1 SMEPRKVVLHKGSTGLGFNIVGGEDGE------GIFVSFILAGGPADLSGELQRGDQILS 54
Query: 99 V-----RNSTSEDKRAS 110
V R ++ E A+
Sbjct: 55 VNGIDLRGASHEQAAAA 71
Score = 31.2 bits (69), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 131 NGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
GI+V+ I+ GG A + G LQ GD++++V
Sbjct: 27 EGIFVSFILAGGPADLSGELQRGDQILSV 55
>pdb|2Q9V|A Chain A, Crystal Structure Of The C890s Mutant Of The 4th Pdz
Domain Of Human Membrane Associated Guanylate Kinase
Length = 90
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 35/56 (62%), Gaps = 5/56 (8%)
Query: 44 DIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
DI L + G GF I GG N+ PG+ IY+ I+ GAA DGRL+ GD+LI+V
Sbjct: 5 DIFLWRKETGFGFRILGG--NE--PGEP-IYIGHIVPLGAADTDGRLRSGDELISV 55
Score = 33.9 bits (76), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 113 IFLCNIAGGIGNQHI----PGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
IFL G G + + PG+ IY+ I+ GAA DGRL+ GD+LI+V
Sbjct: 6 IFLWRKETGFGFRILGGNEPGEP-IYIGHIVPLGAADTDGRLRSGDELISV 55
>pdb|2VZ5|A Chain A, Structure Of The Pdz Domain Of Tax1 (Human T-Cell
Leukemia Virus Type I) Binding Protein 3
Length = 139
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 8/53 (15%)
Query: 54 LGFSIAGGIGN-------QHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
LGFSI GGI D GIYVT++ +GG A++ G LQ+GDK++ V
Sbjct: 40 LGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQV 91
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 24/30 (80%), Gaps = 1/30 (3%)
Query: 130 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
D GIYVT++ +GG A++ G LQ+GDK++ V
Sbjct: 63 DKGIYVTRVSEGGPAEIAG-LQIGDKIMQV 91
>pdb|3CH8|A Chain A, The Crystal Structure Of Pdz-Fibronectin Fusion Protein
Length = 195
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 5/51 (9%)
Query: 50 GNKGLGFSIAGGIG---NQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLI 97
G+ LGFSI+GG+G N P D+GI+VT++ G A LQ GDK+I
Sbjct: 1 GSPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPA--SKLLQPGDKII 49
Score = 32.7 bits (73), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 120 GGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLI 157
GG GN P D+GI+VT++ G A LQ GDK+I
Sbjct: 14 GGRGNPFRPDDDGIFVTRVQPEGPA--SKLLQPGDKII 49
>pdb|3DIW|A Chain A, C-Terminal Beta-Catenin Bound Tip-1 Structure
pdb|3DIW|B Chain B, C-Terminal Beta-Catenin Bound Tip-1 Structure
pdb|3DJ1|A Chain A, Crystal Structure Of Tip-1 Wild Type
pdb|3DJ1|B Chain B, Crystal Structure Of Tip-1 Wild Type
Length = 124
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 8/53 (15%)
Query: 54 LGFSIAGGIGN-------QHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
LGFSI GGI D GIYVT++ +GG A++ G LQ+GDK++ V
Sbjct: 29 LGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQV 80
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 24/30 (80%), Gaps = 1/30 (3%)
Query: 130 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
D GIYVT++ +GG A++ G LQ+GDK++ V
Sbjct: 52 DKGIYVTRVSEGGPAEIAG-LQIGDKIMQV 80
>pdb|3GJ9|A Chain A, Crystal Structure Of Tip-1 In Complex With C-Terminal Of
Kir2.3
pdb|3GJ9|B Chain B, Crystal Structure Of Tip-1 In Complex With C-Terminal Of
Kir2.3
pdb|2L4S|A Chain A, Promiscuous Binding At The Crossroads Of Numerous Cancer
Pathways: Insight From The Binding Of Gip With
Glutaminase L
pdb|2L4T|A Chain A, GipGLUTAMINASE L PEPTIDE COMPLEX
Length = 124
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 8/53 (15%)
Query: 54 LGFSIAGGIGN-------QHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
LGFSI GGI D GIYVT++ +GG A++ G LQ+GDK++ V
Sbjct: 29 LGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQV 80
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 24/30 (80%), Gaps = 1/30 (3%)
Query: 130 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
D GIYVT++ +GG A++ G LQ+GDK++ V
Sbjct: 52 DKGIYVTRVSEGGPAEIAG-LQIGDKIMQV 80
>pdb|2W4F|A Chain A, Crystal Structure Of The First Pdz Domain Of Human
Scrib1
Length = 97
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
Query: 39 NMKILDIELVKGNKGLGFSIAGGIGNQHIPGDN-GIYVTKIMDGGAAQVDGRLQVGDKLI 97
+M+ L + +++ GLG SIAGG G+ GD+ GI+++++ + G A G ++VGDKL+
Sbjct: 1 SMEELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLL 59
Query: 98 AV 99
V
Sbjct: 60 EV 61
>pdb|3SFJ|A Chain A, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1)
Pdz Domain Bound To Ical36 Inhibitor Peptide
pdb|3SFJ|C Chain C, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1)
Pdz Domain Bound To Ical36 Inhibitor Peptide
Length = 104
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 8/53 (15%)
Query: 54 LGFSIAGGIGN-------QHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
LGFSI GGI D GIYVT++ +GG A++ G LQ+GDK++ V
Sbjct: 21 LGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQV 72
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 24/30 (80%), Gaps = 1/30 (3%)
Query: 130 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
D GIYVT++ +GG A++ G LQ+GDK++ V
Sbjct: 44 DKGIYVTRVSEGGPAEIAG-LQIGDKIMQV 72
>pdb|2KG2|A Chain A, Solution Structure Of A Pdz Protein
Length = 124
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 8/53 (15%)
Query: 54 LGFSIAGGIGN-------QHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
LGFSI GGI D GIYVT++ +GG A++ G LQ+GDK++ V
Sbjct: 29 LGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQV 80
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 24/30 (80%), Gaps = 1/30 (3%)
Query: 130 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
D GIYVT++ +GG A++ G LQ+GDK++ V
Sbjct: 52 DKGIYVTRVSEGGPAEIAG-LQIGDKIMQV 80
>pdb|4E3B|A Chain A, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1)
Pdz Domain Bound To Ical36-L (Ansrwptsil) Peptide
pdb|4E3B|B Chain B, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1)
Pdz Domain Bound To Ical36-L (Ansrwptsil) Peptide
Length = 102
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 8/53 (15%)
Query: 54 LGFSIAGGIGN-------QHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
LGFSI GGI D GIYVT++ +GG A++ G LQ+GDK++ V
Sbjct: 19 LGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQV 70
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 24/30 (80%), Gaps = 1/30 (3%)
Query: 130 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
D GIYVT++ +GG A++ G LQ+GDK++ V
Sbjct: 42 DKGIYVTRVSEGGPAEIAG-LQIGDKIMQV 70
>pdb|2QG1|A Chain A, Crystal Structure Of The 11th Pdz Domain Of Mpdz (Mupp1)
Length = 92
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 14/75 (18%)
Query: 49 KGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIA-----VRNST 103
K KGLG SI G D G++V+ I+ GG A DGRL GD+++ VRN+T
Sbjct: 13 KPGKGLGLSIVGK------RNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNAT 66
Query: 104 SEDKRASPGIFLCNI 118
E A + C++
Sbjct: 67 QE---AVAALLKCSL 78
Score = 33.9 bits (76), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 5/40 (12%)
Query: 130 DNGIYVTKIMDGGAAQVDGRLQVGDKLIA-----VRNSTR 164
D G++V+ I+ GG A DGRL GD+++ VRN+T+
Sbjct: 28 DTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQ 67
>pdb|3DJ3|A Chain A, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|B Chain B, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|C Chain C, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|D Chain D, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
Length = 113
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 8/53 (15%)
Query: 54 LGFSIAGGIGN-------QHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
LGFSI GGI D GIYVT++ +GG A++ G LQ+GDK++ V
Sbjct: 30 LGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQV 81
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 24/30 (80%), Gaps = 1/30 (3%)
Query: 130 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
D GIYVT++ +GG A++ G LQ+GDK++ V
Sbjct: 53 DKGIYVTRVSEGGPAEIAG-LQIGDKIMQV 81
>pdb|1MFG|A Chain A, The Structure Of Erbin Pdz Domain Bound To The Carboxy-
Terminal Tail Of The Erbb2 Receptor
pdb|1MFL|A Chain A, The Structure Of Erbin Pdz Domain Bound To The Carboxy-
Terminal Tail Of The Erbb2 Receptor
Length = 95
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 33/53 (62%), Gaps = 5/53 (9%)
Query: 48 VKGNKGLGFSIAGGIG---NQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLI 97
V+ + LGFSI+GG+G N P D+GI+VT++ G A LQ GDK+I
Sbjct: 9 VEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPA--SKLLQPGDKII 59
Score = 32.7 bits (73), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 120 GGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLI 157
GG GN P D+GI+VT++ G A LQ GDK+I
Sbjct: 24 GGRGNPFRPDDDGIFVTRVQPEGPA--SKLLQPGDKII 59
>pdb|3CBX|A Chain A, The Dvl2 Pdz Domain In Complex With The C1 Inhibitory
Peptide
pdb|3CBX|B Chain B, The Dvl2 Pdz Domain In Complex With The C1 Inhibitory
Peptide
Length = 105
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 54 LGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTSED 106
LG SI +G + GD GIY+ IM GGA DGR++ GD L+ V + E+
Sbjct: 19 LGISI---VGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFEN 68
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 122 IGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRN 161
+G + GD GIY+ IM GGA DGR++ GD L+ V +
Sbjct: 24 VGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVND 63
>pdb|1WG6|A Chain A, Solution Structure Of Pdz Domain In Protein Xp_110852
Length = 127
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 50 GNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNST 103
G+ GLG S+ G ++ D GI++ I+ GGAA DGRL++ D+LIAV T
Sbjct: 35 GSAGLGVSLKGN-KSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGET 87
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 130 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNST 163
D GI++ I+ GGAA DGRL++ D+LIAV T
Sbjct: 54 DLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGET 87
>pdb|2H3L|A Chain A, Crystal Structure Of Erbin Pdz
pdb|2H3L|B Chain B, Crystal Structure Of Erbin Pdz
pdb|1N7T|A Chain A, Erbin Pdz Domain Bound To A Phage-Derived Peptide
Length = 103
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 33/53 (62%), Gaps = 5/53 (9%)
Query: 48 VKGNKGLGFSIAGGIG---NQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLI 97
V+ + LGFSI+GG+G N P D+GI+VT++ G A LQ GDK+I
Sbjct: 17 VEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPA--SKLLQPGDKII 67
Score = 32.7 bits (73), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 106 DKRASPGIFLCNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLI 157
+K G + GG GN P D+GI+VT++ G A LQ GDK+I
Sbjct: 18 EKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPA--SKLLQPGDKII 67
>pdb|2REY|A Chain A, Crystal Structure Of The Pdz Domain Of Human Dishevelled 2
(Homologous To Drosophila Dsh)
Length = 100
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 54 LGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTSED 106
LG SI +G + GD GIY+ IM GGA DGR++ GD L+ V + E+
Sbjct: 19 LGISI---VGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFEN 68
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 122 IGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRN 161
+G + GD GIY+ IM GGA DGR++ GD L+ V +
Sbjct: 24 VGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVND 63
>pdb|2DAZ|A Chain A, Solution Structure Of The 7th Pdz Domain Of Inad-Like
Protein
Length = 124
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 29 VRRKKVTRQGNMKILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDG 88
+R++ G + I IEL K GLG S+AG + I+V I G A DG
Sbjct: 15 IRQRYADLPGELHI--IELEKDKNGLGLSLAGNKDRSRM----SIFVVGINPEGPAAADG 68
Query: 89 RLQVGDKLIAVRN 101
R+++GD+L+ + N
Sbjct: 69 RMRIGDELLEINN 81
Score = 29.6 bits (65), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 133 IYVTKIMDGGAAQVDGRLQVGDKLIAVRN 161
I+V I G A DGR+++GD+L+ + N
Sbjct: 53 IFVVGINPEGPAAADGRMRIGDELLEINN 81
>pdb|3CBY|A Chain A, The Dvl2 Pdz Domain In Complex With The N1 Inhibitory
Peptide
pdb|3CBY|B Chain B, The Dvl2 Pdz Domain In Complex With The N1 Inhibitory
Peptide
Length = 108
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 54 LGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTSED 106
LG SI +G + GD GIY+ IM GGA DGR++ GD L+ V + E+
Sbjct: 19 LGISI---VGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFEN 68
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 122 IGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRN 161
+G + GD GIY+ IM GGA DGR++ GD L+ V +
Sbjct: 24 VGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVND 63
>pdb|3CC0|A Chain A, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
pdb|3CC0|B Chain B, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
pdb|3CC0|C Chain C, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
Length = 108
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 54 LGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTSED 106
LG SI +G + GD GIY+ IM GGA DGR++ GD L+ V + E+
Sbjct: 19 LGISI---VGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFEN 68
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 122 IGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRN 161
+G + GD GIY+ IM GGA DGR++ GD L+ V +
Sbjct: 24 VGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVND 63
>pdb|1WFV|A Chain A, Solution Structure Of The Fifth Pdz Domain Of Human
Membrane Associated Guanylate Kinase Inverted-2
(Kiaa0705 Protein)
Length = 103
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 39 NMKILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIA 98
+ +++ KG KG GFSI GG + D +YV ++ + G A +GR++VGD++I
Sbjct: 9 DFDYFTVDMEKGAKGFGFSIRGG---REYKMD--LYVLRLAEDGPAIRNGRMRVGDQIIE 63
Query: 99 VRNSTSEDKRASPGIFLCNIAG 120
+ ++ D + I L G
Sbjct: 64 INGESTRDMTHARAIELIKSGG 85
Score = 26.9 bits (58), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 133 IYVTKIMDGGAAQVDGRLQVGDKLIAVR-NSTR 164
+YV ++ + G A +GR++VGD++I + STR
Sbjct: 38 LYVLRLAEDGPAIRNGRMRVGDQIIEINGESTR 70
>pdb|3CBZ|A Chain A, The Dvl2 Pdz Domain In Complex With The N2 Inhibitory
Peptide
Length = 108
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 54 LGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTSED 106
LG SI +G + GD GIY+ IM GGA DGR++ GD L+ V + E+
Sbjct: 19 LGISI---VGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFEN 68
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 122 IGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRN 161
+G + GD GIY+ IM GGA DGR++ GD L+ V +
Sbjct: 24 VGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVND 63
>pdb|1Q7X|A Chain A, Solution Structure Of The Alternatively Spliced Pdz2
Domain (Pdz2b) Of Ptp-Bas (Hptp1e)
Length = 108
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 7/63 (11%)
Query: 42 ILDIELVKGNKGLGFSIA-----GGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKL 96
I ++EL K + LG S+ GG+ G GIYV ++ GAA+ DGR+ GD++
Sbjct: 10 IFEVELAKNDNSLGISVTVLFDKGGVNTSVRHG--GIYVKAVIPQGAAESDGRIHKGDRV 67
Query: 97 IAV 99
+AV
Sbjct: 68 LAV 70
Score = 33.5 bits (75), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 132 GIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
GIYV ++ GAA+ DGR+ GD+++AV
Sbjct: 43 GIYVKAVIPQGAAESDGRIHKGDRVLAV 70
>pdb|2KAW|A Chain A, Nmr Structure Of The Mdvl1 Pdz Domain In Complex With Its
Inhibitor
Length = 90
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 54 LGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTSED 106
LG SI +G + GD GIY+ IM GGA DGR++ GD L+ V + E+
Sbjct: 15 LGISI---VGQSNDRGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDVNFEN 64
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 122 IGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRN 161
+G + GD GIY+ IM GGA DGR++ GD L+ V +
Sbjct: 20 VGQSNDRGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVND 59
>pdb|1MC7|A Chain A, Solution Structure Of Mdvl1 Pdz Domain
Length = 95
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 54 LGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTSED 106
LG SI G ++ GD GIY+ IM GGA DGR++ GD L+ V + E+
Sbjct: 12 LGISIVGQSNDR---GDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDVNFEN 61
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 122 IGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRN 161
+G + GD GIY+ IM GGA DGR++ GD L+ V +
Sbjct: 17 VGQSNDRGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVND 56
>pdb|2QBW|A Chain A, The Crystal Structure Of Pdz-Fibronectin Fusion Protein
Length = 195
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 30/47 (63%), Gaps = 5/47 (10%)
Query: 54 LGFSIAGGIG---NQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLI 97
LGFSI+GG+G N P D+GI+VT++ G A LQ GDK+I
Sbjct: 4 LGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPA--SKLLQPGDKII 48
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 120 GGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLI 157
GG GN P D+GI+VT++ G A LQ GDK+I
Sbjct: 13 GGRGNPFRPDDDGIFVTRVQPEGPA--SKLLQPGDKII 48
>pdb|2DLU|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Inad- Like Protein
Length = 111
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 41 KILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
+ ++EL+ GLGF I GG +G+ V I+ GG A DGRLQ GD ++ +
Sbjct: 15 HVEEVELINDGSGLGFGIVGGK-------TSGVVVRTIVPGGLADRDGRLQTGDHILKI 66
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 131 NGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+G+ V I+ GG A DGRLQ GD ++ +
Sbjct: 38 SGVVVRTIVPGGLADRDGRLQTGDHILKI 66
>pdb|2DJT|A Chain A, Solution Structures Of The Pdz Domain Of Human Unnamed
Protein Product
Length = 104
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 43 LDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNS 102
+ELV+G G G ++ GG + + GD + V ++ G AQ GRL+VGD ++ +
Sbjct: 13 FSVELVRGYAGFGLTLGGG---RDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGE 69
Query: 103 TSE 105
+++
Sbjct: 70 STQ 72
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 123 GNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNST 163
G + + GD + V ++ G AQ GRL+VGD ++ + +
Sbjct: 30 GGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGES 70
>pdb|1PDR|A Chain A, Crystal Structure Of The Third Pdz Domain From The Human
Homolog Of Discs Large Protein
Length = 99
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 10/67 (14%)
Query: 33 KVTRQGNMKILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQV 92
++TR+ +L +G+ GLGF+I GG + GI+++ I+ GG A + G L+
Sbjct: 3 EITREPRKVVLH----RGSTGLGFNIVGGEDGE------GIFISFILAGGPADLSGELRK 52
Query: 93 GDKLIAV 99
GD++I+V
Sbjct: 53 GDRIISV 59
Score = 29.6 bits (65), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 131 NGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
GI+++ I+ GG A + G L+ GD++I+V
Sbjct: 31 EGIFISFILAGGPADLSGELRKGDRIISV 59
>pdb|2IWO|A Chain A, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
pdb|2IWO|B Chain B, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
pdb|2IWP|A Chain A, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
pdb|2IWP|B Chain B, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
Length = 120
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 39 NMKILDIELVKG-NKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLI 97
+M + +E+ KG LG SIAGG+G+ GD I++ + G A +L+VGD+++
Sbjct: 22 SMGLRTVEMKKGPTDSLGISIAGGVGSPL--GDVPIFIAMMHPTGVAAQTQKLRVGDRIV 79
Query: 98 AVRNSTSEDKRASPGI-FLCNIAGGIGNQHIPG 129
+ +++E + + L N +G I Q + G
Sbjct: 80 TICGTSTEGMTHTQAVNLLKNASGSIEMQVVAG 112
>pdb|1UHP|A Chain A, Solution Structure Of Rsgi Ruh-005, A Pdz Domain In
Human Cdna, Kiaa1095
Length = 107
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 43 LDIELVKGNKGLGFSIAGG---IGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
L + L + + LGF+I GG + N GI+V+KI+D G A +G LQ+ D++I V
Sbjct: 10 LTLVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEV 69
Score = 33.5 bits (75), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 117 NIAGG---IGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
NI GG + N GI+V+KI+D G A +G LQ+ D++I V
Sbjct: 24 NIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEV 69
>pdb|3K82|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 98
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 11/62 (17%)
Query: 49 KGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV-----RNST 103
+G+ GLGF+I GG + GI+++ I+ GG A + G L+ GD++++V RN++
Sbjct: 14 RGSTGLGFNIVGGEXGE------GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNAS 67
Query: 104 SE 105
E
Sbjct: 68 HE 69
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 21/29 (72%)
Query: 131 NGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
GI+++ I+ GG A + G L+ GD++++V
Sbjct: 30 EGIFISFILAGGPADLSGELRKGDQILSV 58
>pdb|1UEZ|A Chain A, Solution Structure Of The First Pdz Domain Of Human
Kiaa1526 Protein
Length = 101
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 42/67 (62%), Gaps = 6/67 (8%)
Query: 37 QGNMKILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKL 96
G ++++ + K ++GLGFSI G G++H GIYV+ + G A+ +G L+VGD++
Sbjct: 6 SGEVRLVSLRRAKAHEGLGFSIRG--GSEH---GVGIYVSLVEPGSLAEKEG-LRVGDQI 59
Query: 97 IAVRNST 103
+ V + +
Sbjct: 60 LRVNDKS 66
>pdb|3I4W|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|B Chain B, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|C Chain C, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|D Chain D, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 104
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 11/62 (17%)
Query: 49 KGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV-----RNST 103
+G+ GLGF+I GG + GI+++ I+ GG A + G L+ GD++++V RN++
Sbjct: 19 RGSTGLGFNIVGGEXGE------GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNAS 72
Query: 104 SE 105
E
Sbjct: 73 HE 74
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 21/29 (72%)
Query: 131 NGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
GI+++ I+ GG A + G L+ GD++++V
Sbjct: 35 EGIFISFILAGGPADLSGELRKGDQILSV 63
>pdb|1I16|A Chain A, Structure Of Interleukin 16: Implications For Function,
Nmr, 20 Structures
Length = 130
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 42 ILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLI 97
+ + L K + GLGFS+ GG G+ H GD + + +I G A++ +Q GD+++
Sbjct: 30 VCTVTLEKMSAGLGFSLEGGKGSLH--GDKPLTINRIFKGAASEQSETVQPGDEIL 83
Score = 26.2 bits (56), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLI 157
++ GG G+ H GD + + +I G A++ +Q GD+++
Sbjct: 45 SLEGGKGSLH--GDKPLTINRIFKGAASEQSETVQPGDEIL 83
>pdb|1TP3|A Chain A, Pdz3 Domain Of Psd-95 Protein Complexed With Kketpv
Peptide Ligand
pdb|1TP5|A Chain A, Crystal Structure Of Pdz3 Domain Of Psd-95 Protein
Complexed With A Peptide Ligand Kketwv
pdb|1TQ3|A Chain A, Higher Resolution Crystal Structure Of The Third Pdz
Domain Of Post Synaptic Psd-95 Protein
Length = 119
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 11/62 (17%)
Query: 49 KGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV-----RNST 103
+G+ GLGF+I GG + GI+++ I+ GG A + G L+ GD++++V RN++
Sbjct: 22 RGSTGLGFNIVGGEDGE------GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNAS 75
Query: 104 SE 105
E
Sbjct: 76 HE 77
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 21/29 (72%)
Query: 131 NGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
GI+++ I+ GG A + G L+ GD++++V
Sbjct: 38 EGIFISFILAGGPADLSGELRKGDQILSV 66
>pdb|2I0I|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I0I|B Chain B, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I0I|C Chain C, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 85
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 6/53 (11%)
Query: 47 LVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
L +G+ GLGF+I GG + GI+++ I+ GG A + G L+ GD++I+V
Sbjct: 10 LHRGSTGLGFNIVGGEDGE------GIFISFILAGGPADLSGELRKGDRIISV 56
Score = 29.6 bits (65), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 131 NGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
GI+++ I+ GG A + G L+ GD++I+V
Sbjct: 28 EGIFISFILAGGPADLSGELRKGDRIISV 56
>pdb|1X5Q|A Chain A, Solution Structure Of The First Pdz Domain Of Scribble
Homolog Protein (Hscrib)
Length = 110
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 43 LDIELVKGNKGLGFSIAGGIGNQHIPGDN-GIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
L + +++ GLG SIAGG G+ GD+ GI+++++ + G A G ++VGDKL+ V
Sbjct: 17 LTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEV 73
>pdb|1OZI|A Chain A, The Alternatively Spliced Pdz2 Domain Of Ptp-Bl
Length = 99
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 7/68 (10%)
Query: 43 LDIELVKGNKGLGFSIA-----GGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLI 97
++EL K + LG S+ GG+ G GIYV I+ GAA+ DGR+ GD+++
Sbjct: 6 FEVELAKTDGSLGISVTVLFDKGGVNTSVRHG--GIYVKAIIPKGAAESDGRIHKGDRVL 63
Query: 98 AVRNSTSE 105
AV + E
Sbjct: 64 AVNGVSLE 71
Score = 33.9 bits (76), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 132 GIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
GIYV I+ GAA+ DGR+ GD+++AV
Sbjct: 38 GIYVKAIIPKGAAESDGRIHKGDRVLAV 65
>pdb|1BE9|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95 In
Complex With A C-Terminal Peptide Derived From Cript.
pdb|1BFE|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95
Length = 119
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 11/62 (17%)
Query: 49 KGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV-----RNST 103
+G+ GLGF+I GG + GI+++ I+ GG A + G L+ GD++++V RN++
Sbjct: 22 RGSTGLGFNIIGGEDGE------GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNAS 75
Query: 104 SE 105
E
Sbjct: 76 HE 77
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 21/29 (72%)
Query: 131 NGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
GI+++ I+ GG A + G L+ GD++++V
Sbjct: 38 EGIFISFILAGGPADLSGELRKGDQILSV 66
>pdb|3FY5|A Chain A, Dishevelled Pdz Domain Homodimer
pdb|3FY5|B Chain B, Dishevelled Pdz Domain Homodimer
Length = 91
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 54 LGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTSED 106
LG SI +G + GD GIY+ I GGA DGR++ GD L+ V + E+
Sbjct: 13 LGISI---VGQSNERGDGGIYIGSIXKGGAVAADGRIEPGDXLLQVNDINFEN 62
Score = 35.4 bits (80), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 122 IGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRN 161
+G + GD GIY+ I GGA DGR++ GD L+ V +
Sbjct: 18 VGQSNERGDGGIYIGSIXKGGAVAADGRIEPGDXLLQVND 57
>pdb|2O2T|A Chain A, The Crystal Structure Of The 1st Pdz Domain Of Mpdz
pdb|2O2T|B Chain B, The Crystal Structure Of The 1st Pdz Domain Of Mpdz
Length = 117
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 45 IELVKGNKG-LGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
EL+K G LGFS+ G G+ GI+V +I +G A DGRL+ D+++A+
Sbjct: 24 FELLKPPSGGLGFSVVGLRSENR--GELGIFVQEIQEGSVAHRDGRLKETDQILAI 77
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 129 GDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
G+ GI+V +I +G A DGRL+ D+++A+
Sbjct: 47 GELGIFVQEIQEGSVAHRDGRLKETDQILAI 77
>pdb|2F0A|A Chain A, Crystal Structure Of Monomeric Uncomplexed Form Of Xenopus
Dishevelled Pdz Domain
pdb|2F0A|B Chain B, Crystal Structure Of Monomeric Uncomplexed Form Of Xenopus
Dishevelled Pdz Domain
pdb|2F0A|C Chain C, Crystal Structure Of Monomeric Uncomplexed Form Of Xenopus
Dishevelled Pdz Domain
pdb|2F0A|D Chain D, Crystal Structure Of Monomeric Uncomplexed Form Of Xenopus
Dishevelled Pdz Domain
Length = 98
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 54 LGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTSED 106
LG SI +G + GD GIY+ I GGA DGR++ GD L+ V + E+
Sbjct: 15 LGISI---VGQSNERGDGGIYIGSIXKGGAVAADGRIEPGDXLLQVNDINFEN 64
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 122 IGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRN 161
+G + GD GIY+ I GGA DGR++ GD L+ V +
Sbjct: 20 VGQSNERGDGGIYIGSIXKGGAVAADGRIEPGDXLLQVND 59
>pdb|1L6O|A Chain A, Xenopus Dishevelled Pdz Domain
pdb|1L6O|B Chain B, Xenopus Dishevelled Pdz Domain
pdb|1L6O|C Chain C, Xenopus Dishevelled Pdz Domain
Length = 95
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 54 LGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTSED 106
LG SI +G + GD GIY+ I GGA DGR++ GD L+ V + E+
Sbjct: 15 LGISI---VGQSNERGDGGIYIGSIXKGGAVAADGRIEPGDXLLQVNDINFEN 64
Score = 35.0 bits (79), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 122 IGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRN 161
+G + GD GIY+ I GGA DGR++ GD L+ V +
Sbjct: 20 VGQSNERGDGGIYIGSIXKGGAVAADGRIEPGDXLLQVND 59
>pdb|2OPG|A Chain A, The Crystal Structure Of The 10th Pdz Domain Of Mpdz
pdb|2OPG|B Chain B, The Crystal Structure Of The 10th Pdz Domain Of Mpdz
Length = 98
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 45 IELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
IE+ KG GLG SI G G+ + G I + ++ + GAA DGRL GD+++ V
Sbjct: 8 IEISKGRTGLGLSIVG--GSDTLLG--AIIIHEVYEEGAACKDGRLWAGDQILEV 58
>pdb|2JRE|A Chain A, C60-1, A Pdz Domain Designed Using Statistical Coupling
Analysis
Length = 108
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Query: 40 MKILDIELV--KGNKGLGFSIAGGIGNQHIPGD-NGIYVTKIMDGGAAQVDGRLQVGDKL 96
+ +EL K LG SI+G + +Q G+ GIYV ++ G AA +DGR++ DK+
Sbjct: 11 FSLYSVELFREKDTSSLGISISG-MRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKI 69
Query: 97 IAV 99
+ V
Sbjct: 70 LRV 72
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 121 GIGNQHIPGD-NGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
G+ +Q G+ GIYV ++ G AA +DGR++ DK++ V
Sbjct: 33 GMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRV 72
>pdb|1N7E|A Chain A, Crystal Structure Of The Sixth Pdz Domain Of Grip1
pdb|1N7F|A Chain A, Crystal Structure Of The Sixth Pdz Domain Of Grip1 In
Complex With Liprin C-Terminal Peptide
pdb|1N7F|B Chain B, Crystal Structure Of The Sixth Pdz Domain Of Grip1 In
Complex With Liprin C-Terminal Peptide
Length = 97
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 42 ILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRN 101
I +EL + LG +I+G P D I ++ + GG A+ G + +GD+++A+ +
Sbjct: 6 IYTVELKRYGGPLGITISG----TEEPFDP-IIISSLTKGGLAERTGAIHIGDRILAINS 60
Query: 102 STSEDKRASPGIFLCNIAG 120
S+ + K S I L +AG
Sbjct: 61 SSLKGKPLSEAIHLLQMAG 79
Score = 26.6 bits (57), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 9/33 (27%), Positives = 22/33 (66%)
Query: 131 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNST 163
+ I ++ + GG A+ G + +GD+++A+ +S+
Sbjct: 30 DPIIISSLTKGGLAERTGAIHIGDRILAINSSS 62
>pdb|1WI4|A Chain A, Solution Structure Of The Pdz Domain Of Syntaxin Binding
Protein 4
Length = 109
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 48 VKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNST 103
V GLG I GGI P +Y+ +++ GG DGRL+ GD+L+++ +
Sbjct: 21 VTKETGLGLKILGGINRNEGPL---VYIHEVIPGGDCYKDGRLKPGDQLVSINKES 73
Score = 30.0 bits (66), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 118 IAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNST 163
I GGI P +Y+ +++ GG DGRL+ GD+L+++ +
Sbjct: 31 ILGGINRNEGPL---VYIHEVIPGGDCYKDGRLKPGDQLVSINKES 73
>pdb|1UEP|A Chain A, Solution Structure Of The Third Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 103
Score = 33.9 bits (76), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 41 KILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
K LD+ L + G GF I GG PG I + ++ G+A DGRL GD+L+ V
Sbjct: 9 KELDVHLRRMESGFGFRILGG----DEPGQP-ILIGAVIAMGSADRDGRLHPGDELVYV 62
>pdb|2KPK|A Chain A, Magi-1 Pdz1
pdb|2KPL|A Chain A, Magi-1 Pdz1 E6CT
Length = 129
Score = 33.9 bits (76), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 41 KILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVR 100
K + +L K ++G GF++ GG D + + ++ G A +DG+++ GD +++V
Sbjct: 18 KFIHTKLRKSSRGFGFTVVGGDEP-----DEFLQIKSLVLDGPAALDGKMETGDVIVSVN 72
Query: 101 NS 102
++
Sbjct: 73 DT 74
>pdb|3O46|A Chain A, Crystal Structure Of The Pdz Domain Of Mpp7
Length = 93
Score = 33.9 bits (76), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 45 IELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTS 104
I LVK + LG +I + I V +I GGAA G + VGD+L V
Sbjct: 8 IRLVKNREPLGATI------KKDEQTGAIIVARIXRGGAADRSGLIHVGDELREVNGIPV 61
Query: 105 EDKRASPGI-FLCNIAGGIGNQHIPG 129
EDKR I L G I + IPG
Sbjct: 62 EDKRPEEIIQILAQSQGAITFKIIPG 87
>pdb|3B76|A Chain A, Crystal Structure Of The Third Pdz Domain Of Human
Ligand-of-numb Protein-x (lnx1) In Complex With The
C-terminal Peptide From The Coxsackievirus And
Adenovirus Receptor
pdb|3B76|B Chain B, Crystal Structure Of The Third Pdz Domain Of Human
Ligand-of-numb Protein-x (lnx1) In Complex With The
C-terminal Peptide From The Coxsackievirus And
Adenovirus Receptor
Length = 118
Score = 33.9 bits (76), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 52 KGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
+ LG ++AGG H D IYV + GG DGR++ GD L+ V
Sbjct: 36 ESLGMTVAGG--ASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNV 81
Score = 29.6 bits (65), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 111 PGIFLCNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
PG L G G H D IYV + GG DGR++ GD L+ V
Sbjct: 34 PGESLGMTVAG-GASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNV 81
>pdb|1IHJ|A Chain A, Crystal Structure Of The N-Terminal Pdz Domain Of Inad In
Complex With A Norpa C-Terminal Peptide
pdb|1IHJ|B Chain B, Crystal Structure Of The N-Terminal Pdz Domain Of Inad In
Complex With A Norpa C-Terminal Peptide
Length = 98
Score = 32.7 bits (73), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 106 DKRASPGIFLCNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIA-----VR 160
DK +C + G + + GI++ I+ A + GRL+VGD++++ VR
Sbjct: 12 DKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVR 71
Query: 161 NSTR 164
NST
Sbjct: 72 NSTE 75
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Query: 50 GNKGLGFSIA-GGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIA-----VRNST 103
G K G I G + + GI++ I+ A + GRL+VGD++++ VRNST
Sbjct: 15 GKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNST 74
Query: 104 SE 105
+
Sbjct: 75 EQ 76
>pdb|1UJD|A Chain A, Solution Structure Of Rsgi Ruh-003, A Pdz Domain Of
Hypothetical Kiaa0559 Protein From Human Cdna
Length = 117
Score = 32.7 bits (73), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 7/53 (13%)
Query: 48 VKGNKGLGFSIAGGIGNQHIPGDNG---IYVTKIMDGGAAQVDGRLQVGDKLI 97
V GN GLG I GG + IPG +G Y+ KI+ GG+A+ G+L G +++
Sbjct: 27 VSGN-GLGIRIVGG---KEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVL 75
Score = 29.6 bits (65), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Query: 122 IGNQHIPGDNG---IYVTKIMDGGAAQVDGRLQVGDKLI 157
+G + IPG +G Y+ KI+ GG+A+ G+L G +++
Sbjct: 37 VGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVL 75
>pdb|2JIL|A Chain A, Crystal Structure Of 2nd Pdz Domain Of Glutamate
Receptor Interacting Protein-1 (Grip1)
pdb|2JIL|B Chain B, Crystal Structure Of 2nd Pdz Domain Of Glutamate
Receptor Interacting Protein-1 (Grip1)
Length = 97
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 7/64 (10%)
Query: 39 NMKILDIELVKGNKGLGFSIAGGIG---NQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDK 95
+M+ +++ L K GF I GG N+ P + +T + GG A +G ++ GD+
Sbjct: 1 SMRTVEVTLHKEGNTFGFVIRGGAHDDRNKSRP----VVITSVRPGGPADREGTIKPGDR 56
Query: 96 LIAV 99
L++V
Sbjct: 57 LLSV 60
>pdb|2I04|A Chain A, X-Ray Crystal Structure Of Magi-1 Pdz1 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I04|B Chain B, X-Ray Crystal Structure Of Magi-1 Pdz1 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 85
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Query: 46 ELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNS 102
+L K ++G GF++ GG D + + ++ G A +DG+++ GD +++V ++
Sbjct: 5 KLRKSSRGFGFTVVGGD-----EPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDT 56
>pdb|1UEQ|A Chain A, Solution Structure Of The First Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 123
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 42 ILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRN 101
L L K N G GF+I GG D + V ++ G A DG+++ GD ++ +
Sbjct: 20 FLSTTLKKSNMGFGFTIIGGDEP-----DEFLQVKSVIPDGPAAQDGKMETGDVIVYINE 74
>pdb|2D92|A Chain A, Solution Structure Of The Fifth Pdz Domain Of Inad-Like
Protein
Length = 108
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 45 IELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRN 101
+ELVK KGLGFSI + P + I + ++ G A+ G L GD+L++V
Sbjct: 19 VELVKDCKGLGFSIL-DYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNE 74
>pdb|1WIF|A Chain A, The Solution Structure Of Rsgi Ruh-020, A Pdz Domain Of
Hypothetical Protein From Mouse
Length = 126
Score = 31.2 bits (69), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 12/61 (19%)
Query: 41 KILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIY--VTKIMDGGAAQVDGRLQVGDKLIA 98
K++ +L GN GLG + NG Y ++ +++ GAA DG LQ GD LI+
Sbjct: 27 KVIQTKLTVGNLGLGLVVI----------QNGPYLQISHLINKGAAASDGILQPGDVLIS 76
Query: 99 V 99
V
Sbjct: 77 V 77
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 130 DNGIY--VTKIMDGGAAQVDGRLQVGDKLIAV 159
NG Y ++ +++ GAA DG LQ GD LI+V
Sbjct: 46 QNGPYLQISHLINKGAAASDGILQPGDVLISV 77
>pdb|2EDP|A Chain A, Solution Structure Of The Pdz Domain From Human Shroom
Family Member 4
Length = 100
Score = 31.2 bits (69), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 5/52 (9%)
Query: 48 VKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
++G GF++ GG+ +H + V+KI DGG A + +++ GD+L+ +
Sbjct: 17 LQGGAPWGFTLKGGL--EHC---EPLTVSKIEDGGKAALSQKMRTGDELVNI 63
Score = 26.2 bits (56), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 133 IYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+ V+KI DGG A + +++ GD+L+ +
Sbjct: 37 LTVSKIEDGGKAALSQKMRTGDELVNI 63
>pdb|2VWR|A Chain A, Crystal Structure Of The Second Pdz Domain Of
Numb-Binding Protein 2
Length = 95
Score = 30.8 bits (68), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 39 NMKILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIA 98
+M+IL + L K + G GI + G+++ +++GG A DGRL D+++A
Sbjct: 1 SMEILQVALHKRDSGEQL----GIKLVRRTDEPGVFILDLLEGGLAAQDGRLSSNDRVLA 56
Query: 99 V 99
+
Sbjct: 57 I 57
Score = 29.6 bits (65), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 21/30 (70%)
Query: 130 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+ G+++ +++GG A DGRL D+++A+
Sbjct: 28 EPGVFILDLLEGGLAAQDGRLSSNDRVLAI 57
>pdb|1NF3|C Chain C, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|D Chain D, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 128
Score = 30.4 bits (67), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 51 NKGLGFSIAGGIGNQHIPGD----NGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
K LGF I G + P GI++++++ GG AQ G L V D+++ V
Sbjct: 41 EKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEV 93
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 132 GIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
GI++++++ GG AQ G L V D+++ V
Sbjct: 66 GIFISRLVPGGLAQSTGLLAVNDEVLEV 93
>pdb|1P1D|A Chain A, Structural Insights Into The Inter-Domain Chaperoning Of
Tandem Pdz Domains In Glutamate Receptor Interacting
Proteins
Length = 196
Score = 30.4 bits (67), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 49 KGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRN 101
K + LG +I+ + PGD + ++ I G A G L++GDKL+A+ N
Sbjct: 116 KHSVELGITISSPSSRK--PGD-PLVISDIKKGSVAHRTGTLELGDKLLAIDN 165
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 128 PGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRN 161
PGD + ++ I G A G L++GDKL+A+ N
Sbjct: 133 PGD-PLVISDIKKGSVAHRTGTLELGDKLLAIDN 165
>pdb|2FCF|A Chain A, The Crystal Structure Of The 7th Pdz Domain Of Mpdz
(Mupp-1)
Length = 103
Score = 29.6 bits (65), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 50/95 (52%), Gaps = 16/95 (16%)
Query: 39 NMKILDIELVK-GNKGLGFSIAGG--IGNQHIPGD--NGIYVTKIMDGGAAQVDGRLQVG 93
+M+ +EL + +K LG SI GG +G++ G+ GI++ +++ A +G L+ G
Sbjct: 2 SMQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPG 61
Query: 94 DKLIAV-----RNSTSED------KRASPGIFLCN 117
D+++ V R+++ E K +P +F+
Sbjct: 62 DRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQ 96
>pdb|2LC6|A Chain A, Solution Structure Of Par-6 Q144cL164C
Length = 128
Score = 29.6 bits (65), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 50 GNKGLGFSIAGG----IGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
+K LGF I G + + GI++++++ GG A+ G L V D++I V
Sbjct: 41 SDKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEV 94
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 132 GIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
GI++++++ GG A+ G L V D++I V
Sbjct: 67 GIFISRLVPGGLAESTGLLAVNDEVIEV 94
>pdb|2IWQ|A Chain A, 7th Pdz Domain Of Multiple Pdz Domain Protein Mpdz
Length = 123
Score = 29.3 bits (64), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 50/95 (52%), Gaps = 16/95 (16%)
Query: 39 NMKILDIELVK-GNKGLGFSIAGG--IGNQHIPGD--NGIYVTKIMDGGAAQVDGRLQVG 93
+M+ +EL + +K LG SI GG +G++ G+ GI++ +++ A +G L+ G
Sbjct: 22 SMQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPG 81
Query: 94 DKLIAV-----RNSTSED------KRASPGIFLCN 117
D+++ V R+++ E K +P +F+
Sbjct: 82 DRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQ 116
>pdb|3HPM|A Chain A, Oxidized Dimeric Pick1 Pdz C46g Mutant In Complex With
The C Tail Peptide Of Glur2
pdb|3HPM|B Chain B, Oxidized Dimeric Pick1 Pdz C46g Mutant In Complex With
The C Tail Peptide Of Glur2
Length = 111
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 54 LGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
+G SI GG Q+ PG +Y+ ++ D A +DG + GD++ V
Sbjct: 19 IGISIGGGA--QYCPG---LYIVQVFDNTPAALDGTVAAGDEITGV 59
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 115 LCNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
L I+ G G Q+ PG +Y+ ++ D A +DG + GD++ V
Sbjct: 18 LIGISIGGGAQYCPG---LYIVQVFDNTPAALDGTVAAGDEITGV 59
>pdb|1RY4|A Chain A, Nmr Structure Of The Crib-Pdz Module Of Par-6
Length = 128
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 50 GNKGLGFSIAGG----IGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
+K LGF I G + + GI++++++ GG A+ G L V D++I V
Sbjct: 41 SDKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEV 94
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 132 GIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
GI++++++ GG A+ G L V D++I V
Sbjct: 67 GIFISRLVPGGLAESTGLLAVNDEVIEV 94
>pdb|1RZX|A Chain A, Crystal Structure Of A Par-6 Pdz-Peptide Complex
Length = 98
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 51 NKGLGFSIAGG----IGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
+K LGF I G + + GI++++++ GG A+ G L V D++I V
Sbjct: 14 DKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEV 66
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 132 GIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
GI++++++ GG A+ G L V D++I V
Sbjct: 39 GIFISRLVPGGLAESTGLLAVNDEVIEV 66
>pdb|2OCS|A Chain A, The Crystal Structure Of The First Pdz Domain Of Human
Nherf-2 (slc9a3r2)
Length = 88
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
Query: 47 LVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
LV+G +G GF + G G + G ++ ++ G A+ L+ GD+L+ V
Sbjct: 7 LVRGEQGYGFHLHGEKGRR------GQFIRRVEPGSPAEAAA-LRAGDRLVEV 52
>pdb|1X8S|A Chain A, Structure Of The Par-6 Pdz Domain With A Pals1 Internal
Ligand
pdb|2LC7|A Chain A, Solution Structure Of The Isolated Par-6 Pdz Domain
Length = 102
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 51 NKGLGFSIAGG----IGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
+K LGF I G + + GI++++++ GG A+ G L V D++I V
Sbjct: 16 DKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEV 68
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 132 GIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
GI++++++ GG A+ G L V D++I V
Sbjct: 41 GIFISRLVPGGLAESTGLLAVNDEVIEV 68
>pdb|1UEW|A Chain A, Solution Structure Of The Forth Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 114
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 10/57 (17%)
Query: 49 KGNKGLGFSIAGGIGNQHIPGDNGIYVT------KIMDGGAAQVDGRLQVGDKLIAV 99
K N+G GF I + ++G +T +I+DG A +L+VGD+++AV
Sbjct: 19 KENEGFGFVIISSLNRP----ESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAV 71
>pdb|2V90|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|B Chain B, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|C Chain C, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|D Chain D, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|E Chain E, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|F Chain F, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And
Kidney-enriched Pdz Domain Ikepp (pdzd3)
Length = 96
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 39 NMKILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIA 98
+MK + L KG +G GF + G + G G ++ ++ G A+ G +Q GD+L+A
Sbjct: 1 SMKPRCLHLEKGPQGFGFLLREEKG---LDGRPGQFLWEVDPGLPAKKAG-MQAGDRLVA 56
Query: 99 VRNSTSE 105
V + E
Sbjct: 57 VAGESVE 63
>pdb|2OFQ|A Chain A, Nmr Solution Structure Of A Complex Between The Virb9VIRB7
Interaction Domains Of The Pkm101 Type Iv Secretion
System
Length = 95
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 111 PGIFLCNIAG--GIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNS 162
P +++ + +G + N H+ G+N I++ + R+++GDK++ VRN+
Sbjct: 42 PQVYMISASGKETLPNSHVVGEN----RNIIEVETVAKEWRIRLGDKVVGVRNN 91
>pdb|3BPU|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Human
Membrane Associated Guanylate Kinase, C677s And C709s
Double Mutant
Length = 88
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 9/61 (14%)
Query: 39 NMKILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIA 98
+M+++ + +VKG G GF+IA PG G V +I+D ++ L+ GD ++
Sbjct: 1 SMELITVHIVKGPMGFGFTIADS------PGGGGQRVKQIVDSPRSR---GLKEGDLIVE 51
Query: 99 V 99
V
Sbjct: 52 V 52
>pdb|2QT5|A Chain A, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
pdb|2QT5|B Chain B, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
Length = 200
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 40 MKILDIELVKGNKGLGFSIAGGIG---NQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKL 96
+ +++ L K GF I GG N+ P + +T + GG A +G ++ GD+L
Sbjct: 105 FRTVEVTLHKEGNTFGFVIRGGAHDDRNKSRP----VVITCVRPGGPADREGTIKPGDRL 160
Query: 97 IAV 99
++V
Sbjct: 161 LSV 163
>pdb|1SNZ|A Chain A, Crystal Structure Of Apo Human Galactose Mutarotase
pdb|1SNZ|B Chain B, Crystal Structure Of Apo Human Galactose Mutarotase
pdb|1SO0|A Chain A, Crystal Structure Of Human Galactose Mutarotase Complexed
With Galactose
pdb|1SO0|B Chain B, Crystal Structure Of Human Galactose Mutarotase Complexed
With Galactose
pdb|1SO0|C Chain C, Crystal Structure Of Human Galactose Mutarotase Complexed
With Galactose
pdb|1SO0|D Chain D, Crystal Structure Of Human Galactose Mutarotase Complexed
With Galactose
Length = 344
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 37 QGNMKILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQV 92
+G K+L V N G+ FS G + PG+ ++VT +DGG V+ R Q
Sbjct: 113 RGFDKVLWTPRVLSN-GVQFSRISPDGEEGYPGELKVWVTYTLDGGELIVNYRAQA 167
>pdb|1X45|A Chain A, Solution Structure Of The First Pdz Domain Of Amyloid Beta
A4 Precursor Protein-Binding Family A, Member 1
Length = 98
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 8/31 (25%), Positives = 21/31 (67%)
Query: 73 IYVTKIMDGGAAQVDGRLQVGDKLIAVRNST 103
+ + +M GG A+ G+L +GD+++++ ++
Sbjct: 35 VIIANMMHGGPAEKSGKLNIGDQIMSINGTS 65
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 8/31 (25%), Positives = 21/31 (67%)
Query: 133 IYVTKIMDGGAAQVDGRLQVGDKLIAVRNST 163
+ + +M GG A+ G+L +GD+++++ ++
Sbjct: 35 VIIANMMHGGPAEKSGKLNIGDQIMSINGTS 65
>pdb|1X6D|A Chain A, Solution Structures Of The Pdz Domain Of Human
Interleukin- 16
Length = 119
Score = 26.9 bits (58), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 53 GLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
GLGFS+AGG + + I V ++ G A +G +Q G++++++
Sbjct: 28 GLGFSLAGGADLE----NKVITVHRVFPNGLASQEGTIQKGNEVLSI 70
>pdb|1WH1|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Kiaa1095
Protein
Length = 124
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 70 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
D GIY+++I A DGR++ GD++I +
Sbjct: 47 DIGIYISEIDPNSIAAKDGRIREGDRIIQI 76
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 130 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
D GIY+++I A DGR++ GD++I +
Sbjct: 47 DIGIYISEIDPNSIAAKDGRIREGDRIIQI 76
>pdb|2PKU|A Chain A, Solution Structure Of Pick1 Pdz In Complex With The
Carboxyl Tail Peptide Of Glur2
Length = 87
Score = 26.9 bits (58), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 54 LGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
+G SI GG Q+ P +Y+ ++ D A +DG + GD++ V
Sbjct: 16 IGISIGGG--AQYCPC---LYIVQVFDNTPAALDGTVAAGDEITGV 56
>pdb|2GZV|A Chain A, The Cystal Structure Of The Pdz Domain Of Human Pick1
(Casp Target)
Length = 114
Score = 26.9 bits (58), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 54 LGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
+G SI GG Q+ P +Y+ ++ D A +DG + GD++ V
Sbjct: 38 IGISIGGGA--QYCPC---LYIVQVFDNTPAALDGTVAAGDEITGV 78
>pdb|1U38|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
pdb|1U37|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 89
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 73 IYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTS 104
+ + +M GG A+ G+L +GD+++++ N TS
Sbjct: 31 VIIANMMHGGPAEKSGKLNIGDQIMSI-NGTS 61
Score = 26.6 bits (57), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 8/31 (25%), Positives = 21/31 (67%)
Query: 133 IYVTKIMDGGAAQVDGRLQVGDKLIAVRNST 163
+ + +M GG A+ G+L +GD+++++ ++
Sbjct: 31 VIIANMMHGGPAEKSGKLNIGDQIMSINGTS 61
>pdb|1U3B|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 185
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 73 IYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTS 104
+ + +M GG A+ G+L +GD+++++ N TS
Sbjct: 31 VIIANMMHGGPAEKSGKLNIGDQIMSI-NGTS 61
Score = 26.6 bits (57), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 8/31 (25%), Positives = 21/31 (67%)
Query: 133 IYVTKIMDGGAAQVDGRLQVGDKLIAVRNST 163
+ + +M GG A+ G+L +GD+++++ ++
Sbjct: 31 VIIANMMHGGPAEKSGKLNIGDQIMSINGTS 61
>pdb|3HPK|A Chain A, Oxidized Dimeric Pick1 Pdz In Complex With The Carboxyl
Tail Of Glur2
pdb|3HPK|B Chain B, Oxidized Dimeric Pick1 Pdz In Complex With The Carboxyl
Tail Of Glur2
Length = 125
Score = 26.6 bits (57), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 54 LGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
+G SI GG Q+ P +Y+ ++ D A +DG + GD++ V
Sbjct: 33 IGISIGGG--AQYCPC---LYIVQVFDNTPAALDGTVAAGDEITGV 73
>pdb|3JQO|B Chain B, Crystal Structure Of The Outer Membrane Complex Of A Type
Iv Secretion System
pdb|3JQO|E Chain E, Crystal Structure Of The Outer Membrane Complex Of A Type
Iv Secretion System
pdb|3JQO|H Chain H, Crystal Structure Of The Outer Membrane Complex Of A Type
Iv Secretion System
pdb|3JQO|K Chain K, Crystal Structure Of The Outer Membrane Complex Of A Type
Iv Secretion System
pdb|3JQO|N Chain N, Crystal Structure Of The Outer Membrane Complex Of A Type
Iv Secretion System
pdb|3JQO|Q Chain Q, Crystal Structure Of The Outer Membrane Complex Of A Type
Iv Secretion System
pdb|3JQO|T Chain T, Crystal Structure Of The Outer Membrane Complex Of A Type
Iv Secretion System
pdb|3JQO|W Chain W, Crystal Structure Of The Outer Membrane Complex Of A Type
Iv Secretion System
pdb|3JQO|Z Chain Z, Crystal Structure Of The Outer Membrane Complex Of A Type
Iv Secretion System
pdb|3JQO|CC Chain c, Crystal Structure Of The Outer Membrane Complex Of A Type
Iv Secretion System
pdb|3JQO|FF Chain f, Crystal Structure Of The Outer Membrane Complex Of A Type
Iv Secretion System
pdb|3JQO|II Chain i, Crystal Structure Of The Outer Membrane Complex Of A Type
Iv Secretion System
pdb|3JQO|LL Chain l, Crystal Structure Of The Outer Membrane Complex Of A Type
Iv Secretion System
pdb|3JQO|OO Chain o, Crystal Structure Of The Outer Membrane Complex Of A Type
Iv Secretion System
Length = 135
Score = 26.6 bits (57), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Query: 111 PGIFLCNIAG--GIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNS 162
P ++ + +G + N H+ G+N I++ + R+++GDK++ VRN+
Sbjct: 59 PQVYXISASGKETLPNSHVVGEN----RNIIEVETVAKEWRIRLGDKVVGVRNN 108
>pdb|1KWA|A Chain A, Human CaskLIN-2 Pdz Domain
pdb|1KWA|B Chain B, Human CaskLIN-2 Pdz Domain
Length = 88
Score = 26.2 bits (56), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Query: 71 NGIYVTKIMDGGAAQVDGRLQVGDKL-----IAVRNSTSED 106
N V +IM GG G L VGD++ I+V N T E
Sbjct: 25 NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQ 65
>pdb|2YT7|A Chain A, Solution Structure Of The Pdz Domain Of Amyloid Beta A4
Precursor Protein-Binding Family A Member 3
Length = 101
Score = 26.2 bits (56), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 75 VTKIMDGGAAQVDGRLQVGDKLIAVRNSTS 104
+ ++ GG A+ G L +GD+L A+ N TS
Sbjct: 41 IANLLHGGPAERSGALSIGDRLTAI-NGTS 69
Score = 26.2 bits (56), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 135 VTKIMDGGAAQVDGRLQVGDKLIAVRNST 163
+ ++ GG A+ G L +GD+L A+ ++
Sbjct: 41 IANLLHGGPAERSGALSIGDRLTAINGTS 69
>pdb|2OMJ|A Chain A, Solution Structure Of Larg Pdz Domain
pdb|2OS6|A Chain A, Solution Structure Of Larg Pdz Domain In Complex With C-
Terminal Octa-Peptide Of Plexin B1
Length = 89
Score = 26.2 bits (56), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 67 IPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
+ GDN ++V + + GAA G +Q GD++I V
Sbjct: 24 VSGDNPVFVQSVKEDGAAMRAG-VQTGDRIIKV 55
Score = 26.2 bits (56), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 127 IPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+ GDN ++V + + GAA G +Q GD++I V
Sbjct: 24 VSGDNPVFVQSVKEDGAAMRAG-VQTGDRIIKV 55
>pdb|2NXW|A Chain A, Crystal Structure Of Phenylpyruvate Decarboxylase Of
Azospirillum Brasilense
pdb|2NXW|B Chain B, Crystal Structure Of Phenylpyruvate Decarboxylase Of
Azospirillum Brasilense
pdb|2Q5J|A Chain A, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp
pdb|2Q5J|B Chain B, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp
pdb|2Q5L|A Chain A, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 2-(1- Hydroxyethyl)-3-Deaza-Thdp
pdb|2Q5L|B Chain B, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 2-(1- Hydroxyethyl)-3-Deaza-Thdp
pdb|2Q5O|A Chain A, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp And Phenylpyruvate
pdb|2Q5O|B Chain B, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp And Phenylpyruvate
pdb|2Q5Q|A Chain A, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp And 5-Phenyl-2-Oxo-Valeric Acid
pdb|2Q5Q|B Chain B, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp And 5-Phenyl-2-Oxo-Valeric Acid
Length = 565
Score = 26.2 bits (56), Expect = 9.7, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 9/60 (15%)
Query: 53 GLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDG-------RLQVGDKLIAVRNSTSE 105
G+GF + GIG Q + G G + ++ GA Q+ G RL + +I N++ E
Sbjct: 423 GMGFGVPAGIGAQCVSG--GKRILTVVGDGAFQMTGWELGNCRRLGIDPIVILFNNASWE 480
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.141 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,875,467
Number of Sequences: 62578
Number of extensions: 197736
Number of successful extensions: 773
Number of sequences better than 100.0: 162
Number of HSP's better than 100.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 435
Number of HSP's gapped (non-prelim): 323
length of query: 164
length of database: 14,973,337
effective HSP length: 91
effective length of query: 73
effective length of database: 9,278,739
effective search space: 677347947
effective search space used: 677347947
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)