Query psy12206
Match_columns 164
No_of_seqs 178 out of 1892
Neff 7.9
Searched_HMMs 46136
Date Fri Aug 16 21:33:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12206.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12206hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3209|consensus 99.7 1.9E-17 4E-22 144.0 12.0 155 3-163 705-955 (984)
2 KOG3209|consensus 99.7 1.1E-17 2.4E-22 145.4 9.7 119 41-164 649-811 (984)
3 KOG3580|consensus 99.5 1.7E-14 3.7E-19 124.2 7.5 67 38-106 5-73 (1027)
4 PRK10779 zinc metallopeptidase 99.4 2.1E-12 4.7E-17 110.6 10.7 90 73-164 128-253 (449)
5 KOG3580|consensus 99.4 1.9E-12 4E-17 111.8 7.4 56 40-106 197-254 (1027)
6 TIGR00054 RIP metalloprotease 99.4 6.2E-12 1.3E-16 106.9 10.6 92 71-164 128-235 (420)
7 PRK10139 serine endoprotease; 99.3 1.2E-11 2.5E-16 106.3 12.1 93 70-164 289-422 (455)
8 TIGR02037 degP_htrA_DO peripla 99.3 6.4E-12 1.4E-16 107.0 10.3 93 70-164 256-394 (428)
9 KOG3605|consensus 99.3 1.5E-12 3.2E-17 112.9 5.4 115 41-164 645-788 (829)
10 PRK10942 serine endoprotease; 99.3 1.8E-11 3.9E-16 105.6 11.9 93 70-164 310-440 (473)
11 PF00595 PDZ: PDZ domain (Also 99.2 2.3E-11 4.9E-16 80.5 6.7 58 44-106 1-59 (81)
12 KOG3550|consensus 99.1 8.1E-11 1.8E-15 86.1 5.8 65 37-106 86-150 (207)
13 cd00992 PDZ_signaling PDZ doma 98.9 8.5E-09 1.8E-13 67.6 8.0 58 43-106 2-60 (82)
14 KOG3553|consensus 98.8 1.7E-08 3.7E-13 69.0 7.0 52 54-106 37-93 (124)
15 smart00228 PDZ Domain present 98.8 3.8E-08 8.3E-13 64.6 8.3 58 43-106 3-60 (85)
16 cd00136 PDZ PDZ domain, also c 98.8 3.7E-08 8.1E-13 62.8 6.6 46 53-106 2-47 (70)
17 KOG1892|consensus 98.7 3.7E-08 8.1E-13 89.1 6.8 65 39-106 931-995 (1629)
18 PF13180 PDZ_2: PDZ domain; PD 98.6 9E-08 2E-12 63.3 5.9 47 53-106 2-48 (82)
19 KOG3553|consensus 98.6 5.7E-08 1.2E-12 66.4 4.9 48 116-164 39-91 (124)
20 PF00595 PDZ: PDZ domain (Also 98.6 5.4E-08 1.2E-12 64.1 4.1 33 131-164 25-57 (81)
21 PF13180 PDZ_2: PDZ domain; PD 98.6 7.6E-08 1.6E-12 63.7 3.8 33 131-164 14-46 (82)
22 KOG3571|consensus 98.5 1.8E-07 4E-12 79.8 6.7 66 38-106 246-312 (626)
23 KOG3549|consensus 98.5 1.8E-07 3.8E-12 76.9 5.6 63 39-106 52-115 (505)
24 cd00136 PDZ PDZ domain, also c 98.5 3E-07 6.5E-12 58.5 5.4 32 132-164 14-45 (70)
25 KOG3651|consensus 98.5 3.5E-07 7.7E-12 73.9 6.3 60 42-106 5-65 (429)
26 cd00988 PDZ_CTP_protease PDZ d 98.4 6.1E-07 1.3E-11 59.3 5.6 46 52-106 2-47 (85)
27 KOG3551|consensus 98.4 2.8E-07 6E-12 76.6 3.5 60 42-106 85-145 (506)
28 cd00990 PDZ_glycyl_aminopeptid 98.3 1.3E-06 2.9E-11 57.0 5.5 35 71-106 12-46 (80)
29 cd00990 PDZ_glycyl_aminopeptid 98.3 1.1E-06 2.4E-11 57.4 4.9 34 130-164 11-44 (80)
30 cd00991 PDZ_archaeal_metallopr 98.3 1.6E-06 3.5E-11 57.0 5.4 34 130-164 9-42 (79)
31 cd00992 PDZ_signaling PDZ doma 98.3 1.7E-06 3.7E-11 56.5 5.4 33 131-164 26-58 (82)
32 cd00991 PDZ_archaeal_metallopr 98.3 1.7E-06 3.8E-11 56.8 5.3 37 69-106 8-44 (79)
33 cd00988 PDZ_CTP_protease PDZ d 98.3 9.9E-07 2.1E-11 58.2 3.7 35 129-164 11-45 (85)
34 smart00228 PDZ Domain present 98.2 2.8E-06 6E-11 55.6 5.3 33 131-164 26-58 (85)
35 cd00989 PDZ_metalloprotease PD 98.2 2.8E-06 6.1E-11 55.2 5.2 35 71-106 12-46 (79)
36 KOG3550|consensus 98.1 3.1E-06 6.8E-11 62.2 4.5 54 111-164 91-148 (207)
37 cd00989 PDZ_metalloprotease PD 98.1 5.2E-06 1.1E-10 53.9 4.9 33 131-164 12-44 (79)
38 cd00987 PDZ_serine_protease PD 98.1 8E-06 1.7E-10 54.2 5.3 36 70-106 23-58 (90)
39 cd00987 PDZ_serine_protease PD 98.1 7.6E-06 1.6E-10 54.3 4.9 34 130-164 23-56 (90)
40 cd00986 PDZ_LON_protease PDZ d 98.0 1.4E-05 3E-10 52.3 4.7 32 131-164 8-39 (79)
41 KOG3606|consensus 97.9 1.1E-05 2.5E-10 64.4 4.0 64 43-106 160-229 (358)
42 cd00986 PDZ_LON_protease PDZ d 97.9 2.4E-05 5.2E-10 51.1 4.8 34 71-106 8-41 (79)
43 KOG3552|consensus 97.9 1.1E-05 2.4E-10 73.3 3.8 57 38-106 52-108 (1298)
44 KOG3542|consensus 97.9 1.3E-05 2.9E-10 71.0 3.9 64 37-106 531-596 (1283)
45 TIGR02037 degP_htrA_DO peripla 97.8 0.00013 2.8E-09 62.3 9.4 83 18-106 301-396 (428)
46 KOG4407|consensus 97.8 1.9E-05 4.1E-10 73.9 4.5 113 38-164 42-175 (1973)
47 KOG0609|consensus 97.8 4.3E-05 9.3E-10 66.0 5.8 113 41-162 122-252 (542)
48 TIGR00225 prc C-terminal pepti 97.8 3.9E-05 8.5E-10 63.5 5.4 46 52-106 51-96 (334)
49 PLN00049 carboxyl-terminal pro 97.8 5.5E-05 1.2E-09 64.0 6.3 52 52-106 85-136 (389)
50 TIGR00225 prc C-terminal pepti 97.6 3.9E-05 8.4E-10 63.5 3.3 33 131-164 62-94 (334)
51 PRK10779 zinc metallopeptidase 97.6 0.00038 8.3E-09 59.9 9.0 35 71-106 221-255 (449)
52 PLN00049 carboxyl-terminal pro 97.5 0.00012 2.6E-09 61.9 4.9 32 132-164 103-134 (389)
53 PRK10139 serine endoprotease; 97.5 0.00017 3.7E-09 62.3 5.2 34 130-164 289-322 (455)
54 PRK10898 serine endoprotease; 97.4 0.0002 4.3E-09 59.9 4.9 33 131-164 279-311 (353)
55 PRK10942 serine endoprotease; 97.4 0.00024 5.1E-09 61.7 5.2 34 130-164 310-343 (473)
56 PRK10898 serine endoprotease; 97.4 0.00028 6E-09 59.0 5.3 36 70-106 278-313 (353)
57 TIGR02038 protease_degS peripl 97.4 0.0002 4.4E-09 59.8 4.4 33 131-164 278-310 (351)
58 TIGR00054 RIP metalloprotease 97.4 0.00023 5E-09 60.8 4.7 35 71-106 203-237 (420)
59 KOG1892|consensus 97.4 0.00013 2.7E-09 67.0 3.1 35 130-164 959-993 (1629)
60 TIGR01713 typeII_sec_gspC gene 97.4 0.00023 5.1E-09 57.1 4.4 33 131-164 191-223 (259)
61 TIGR02038 protease_degS peripl 97.3 0.00028 6E-09 58.9 4.7 35 71-106 278-312 (351)
62 PF04495 GRASP55_65: GRASP55/6 97.3 0.00072 1.6E-08 49.3 6.3 63 41-106 10-78 (138)
63 TIGR01713 typeII_sec_gspC gene 97.3 0.00042 9.2E-09 55.6 5.5 35 71-106 191-225 (259)
64 COG0793 Prc Periplasmic protea 97.3 0.00043 9.2E-09 59.0 5.4 54 45-106 93-146 (406)
65 TIGR03279 cyano_FeS_chp putati 97.3 0.00016 3.6E-09 61.7 2.8 31 75-106 2-32 (433)
66 COG0793 Prc Periplasmic protea 97.2 0.00036 7.8E-09 59.5 3.9 33 131-164 112-144 (406)
67 KOG3571|consensus 97.0 0.0006 1.3E-08 58.8 3.5 38 127-164 273-310 (626)
68 KOG3651|consensus 97.0 0.00078 1.7E-08 54.9 3.6 34 131-164 30-63 (429)
69 KOG3605|consensus 97.0 0.0012 2.6E-08 58.6 4.9 65 22-106 724-790 (829)
70 PRK11186 carboxy-terminal prot 96.9 0.0012 2.6E-08 59.5 4.9 41 52-100 244-284 (667)
71 KOG3542|consensus 96.9 0.00049 1.1E-08 61.4 2.1 33 131-164 562-594 (1283)
72 PRK11186 carboxy-terminal prot 96.9 0.00072 1.6E-08 60.9 2.9 31 130-161 254-285 (667)
73 KOG3552|consensus 96.8 0.0011 2.5E-08 60.7 3.8 41 121-164 66-106 (1298)
74 COG3975 Predicted protease wit 96.6 0.007 1.5E-07 52.7 7.1 42 52-102 451-492 (558)
75 KOG3606|consensus 96.6 0.002 4.4E-08 51.8 3.0 35 130-164 193-227 (358)
76 KOG3551|consensus 96.5 0.0031 6.7E-08 53.0 3.8 53 112-164 87-143 (506)
77 COG3975 Predicted protease wit 96.5 0.0036 7.7E-08 54.5 4.3 34 128-162 459-492 (558)
78 KOG3129|consensus 96.4 0.0031 6.7E-08 48.8 3.3 30 132-162 140-169 (231)
79 KOG1421|consensus 96.4 0.007 1.5E-07 54.3 5.5 91 69-164 300-434 (955)
80 KOG3938|consensus 96.3 0.003 6.5E-08 50.6 2.7 60 40-106 125-184 (334)
81 KOG1320|consensus 96.2 0.018 3.8E-07 49.9 7.2 91 71-164 287-430 (473)
82 COG0265 DegQ Trypsin-like seri 96.2 0.008 1.7E-07 49.9 4.7 36 70-106 269-304 (347)
83 COG0265 DegQ Trypsin-like seri 96.2 0.0081 1.8E-07 49.8 4.7 34 130-164 269-302 (347)
84 TIGR02860 spore_IV_B stage IV 96.1 0.012 2.6E-07 50.1 5.5 35 71-106 105-147 (402)
85 KOG3129|consensus 96.1 0.0067 1.4E-07 47.0 3.4 35 71-106 139-173 (231)
86 KOG4371|consensus 95.9 0.013 2.8E-07 54.6 5.1 115 41-164 1147-1303(1332)
87 PF04495 GRASP55_65: GRASP55/6 95.8 0.012 2.5E-07 43.0 3.7 32 131-163 43-75 (138)
88 PF11874 DUF3394: Domain of un 95.7 0.085 1.8E-06 40.2 8.1 75 16-99 69-149 (183)
89 KOG3834|consensus 95.7 0.031 6.7E-07 47.6 6.0 88 71-159 15-137 (462)
90 KOG0606|consensus 95.6 0.019 4.1E-07 54.0 4.9 57 45-106 630-692 (1205)
91 TIGR02860 spore_IV_B stage IV 95.4 0.023 5E-07 48.4 4.6 33 131-164 105-145 (402)
92 PF14685 Tricorn_PDZ: Tricorn 95.3 0.019 4.1E-07 38.7 2.9 35 130-164 11-54 (88)
93 KOG0609|consensus 95.0 0.015 3.2E-07 50.7 2.2 33 132-164 147-179 (542)
94 KOG3549|consensus 94.9 0.028 6.1E-07 46.9 3.4 52 113-164 58-113 (505)
95 COG3480 SdrC Predicted secrete 94.0 0.099 2.2E-06 43.1 4.8 34 71-106 130-163 (342)
96 PF14685 Tricorn_PDZ: Tricorn 93.8 0.14 3.1E-06 34.4 4.5 36 71-106 12-56 (88)
97 KOG1421|consensus 93.7 0.22 4.7E-06 45.1 6.6 87 71-163 771-892 (955)
98 KOG1320|consensus 93.6 0.09 2E-06 45.6 3.9 35 71-106 398-432 (473)
99 KOG1738|consensus 93.4 0.092 2E-06 46.7 3.7 51 49-106 210-260 (638)
100 KOG3532|consensus 93.2 0.15 3.2E-06 46.2 4.7 47 52-106 386-432 (1051)
101 KOG3532|consensus 93.1 0.12 2.5E-06 46.8 3.9 33 131-164 398-430 (1051)
102 COG3480 SdrC Predicted secrete 90.0 0.37 7.9E-06 39.8 3.5 32 131-164 130-161 (342)
103 PRK09681 putative type II secr 89.7 0.46 9.9E-06 38.6 3.8 28 136-164 209-239 (276)
104 PRK09681 putative type II secr 88.9 0.45 9.7E-06 38.7 3.2 29 77-106 210-241 (276)
105 KOG2921|consensus 88.0 0.54 1.2E-05 40.0 3.2 47 60-106 209-255 (484)
106 PF12812 PDZ_1: PDZ-like domai 87.7 1.3 2.8E-05 29.0 4.3 34 72-106 31-64 (78)
107 KOG0606|consensus 87.2 0.46 1E-05 45.1 2.6 31 133-164 660-690 (1205)
108 PF12812 PDZ_1: PDZ-like domai 86.5 1.5 3.2E-05 28.7 4.1 32 132-164 31-62 (78)
109 COG0750 Predicted membrane-ass 83.7 1.6 3.6E-05 36.2 4.1 32 74-106 132-163 (375)
110 KOG3938|consensus 83.1 0.6 1.3E-05 37.8 1.2 53 112-164 129-182 (334)
111 KOG3834|consensus 82.3 6 0.00013 34.1 6.9 73 24-104 65-143 (462)
112 COG0750 Predicted membrane-ass 81.8 2.2 4.8E-05 35.4 4.2 29 135-164 133-161 (375)
113 KOG1738|consensus 79.6 1.4 3E-05 39.5 2.3 36 129-164 223-258 (638)
114 KOG4371|consensus 79.4 4.2 9.1E-05 38.8 5.3 83 18-106 1213-1305(1332)
115 COG3031 PulC Type II secretory 76.1 6.4 0.00014 31.5 4.9 26 80-106 216-241 (275)
116 COG3031 PulC Type II secretory 75.1 2.5 5.4E-05 33.8 2.3 29 135-164 211-239 (275)
117 PF11874 DUF3394: Domain of un 72.3 5.8 0.00013 30.3 3.7 73 86-159 68-149 (183)
118 PF07591 PT-HINT: Pretoxin HIN 71.1 2 4.4E-05 30.7 1.0 70 90-163 14-90 (130)
119 KOG4407|consensus 61.0 3.7 8E-05 40.1 0.8 35 71-106 143-177 (1973)
120 KOG2921|consensus 49.3 17 0.00036 31.3 2.8 33 131-164 220-253 (484)
121 PF01079 Hint: Hint module; I 48.7 18 0.0004 28.3 2.8 22 78-100 21-42 (217)
122 COG5233 GRH1 Peripheral Golgi 44.4 15 0.00033 30.6 1.8 29 135-164 67-95 (417)
123 COG5233 GRH1 Peripheral Golgi 37.5 23 0.0005 29.6 1.8 33 73-106 65-97 (417)
124 TIGR03432 yjhG_yagF probable d 27.1 74 0.0016 29.0 3.4 77 26-105 490-571 (640)
125 PRK15464 cold shock-like prote 25.8 1.8E+02 0.0039 18.4 4.5 44 44-98 8-53 (70)
126 PRK08211 putative dehydratase; 25.2 83 0.0018 28.8 3.4 78 26-106 496-578 (655)
127 PRK03760 hypothetical protein; 21.1 73 0.0016 22.3 1.8 24 132-157 90-113 (117)
128 KOG0792|consensus 21.0 49 0.0011 31.9 1.2 60 47-106 710-784 (1144)
129 COG4841 Uncharacterized protei 20.9 59 0.0013 21.9 1.2 18 17-34 17-34 (95)
130 COG1625 Fe-S oxidoreductase, r 20.5 84 0.0018 27.1 2.4 32 74-106 4-36 (414)
No 1
>KOG3209|consensus
Probab=99.74 E-value=1.9e-17 Score=144.04 Aligned_cols=155 Identities=26% Similarity=0.400 Sum_probs=112.7
Q ss_pred eeeeeeeeechhhh-hhhccCceeeEEEeecccCCC---------CCceEEEEEEEcCC-CCcCEEEecCCCCCCCCCCC
Q psy12206 3 IDVISYYCQTCLKV-IALNVGISKFMYVRRKKVTRQ---------GNMKILDIELVKGN-KGLGFSIAGGIGNQHIPGDN 71 (164)
Q Consensus 3 ~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~---------~~~~~~~v~L~k~~-~glGf~i~gg~~~~~~~~~~ 71 (164)
|.|+--+|++.... -.......|+|.|||.....+ .+..+..|.|.|.. .||||.|......+. .
T Consensus 705 ~pV~GksH~~vv~Lm~~AArnghV~LtVRRkv~~~~~~rsp~~s~~~~~~yDV~lhR~ENeGFGFVi~sS~~kp~----s 780 (984)
T KOG3209|consen 705 IPVEGKSHSEVVDLMEAAARNGHVNLTVRRKVRTGPARRSPRNSAAPSGPYDVVLHRKENEGFGFVIMSSQNKPE----S 780 (984)
T ss_pred eeccCccHHHHHHHHHHHHhcCceEEEEeeeeeeccccCCcccccCCCCCeeeEEecccCCceeEEEEecccCCC----C
Confidence 34444455555444 233445678999988764332 34457889998865 799999998876543 2
Q ss_pred cEEEEEeCCCChhhhcCCCCCCCEEEEECCeeccC----------CcCC-------------------------------
Q psy12206 72 GIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTSED----------KRAS------------------------------- 110 (164)
Q Consensus 72 gv~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~v~~----------~~a~------------------------------- 110 (164)
+ |.+|.+||||+++|+|++||+|++|||.++.+ ++|+
T Consensus 781 g--iGrIieGSPAdRCgkLkVGDrilAVNG~sI~~lsHadiv~LIKdaGlsVtLtIip~ee~~~~~~~~sa~~~s~~t~~ 858 (984)
T KOG3209|consen 781 G--IGRIIEGSPADRCGKLKVGDRILAVNGQSILNLSHADIVSLIKDAGLSVTLTIIPPEEAGPPTSMTSAEKQSPFTQN 858 (984)
T ss_pred C--ccccccCChhHhhccccccceEEEecCeeeeccCchhHHHHHHhcCceEEEEEcChhccCCCCCCcchhhcCccccc
Confidence 3 89999999999999999999999999999988 2222
Q ss_pred ----------------------C----------c---------eeEeeeccCCCCccc---CCCCCeEEEEECCCChhhh
Q psy12206 111 ----------------------P----------G---------IFLCNIAGGIGNQHI---PGDNGIYVTKIMDGGAAQV 146 (164)
Q Consensus 111 ----------------------~----------~---------v~l~~~~~~~~~~~~---~~~~gv~I~~v~~gs~A~~ 146 (164)
| + |+|-....|+|+... ..+.++||..+.+++||.+
T Consensus 859 ~~~~q~~glp~~~~s~~~~~pqpdt~~~~~~~~r~~qn~~~~~VelErG~kGFGFSiRGGreynM~LfVLRlAeDGPA~r 938 (984)
T KOG3209|consen 859 GPYEQQYGLPGPRPSVYEEHPQPDTFQGLSINDRMSQNGDLYTVELERGAKGFGFSIRGGREYNMDLFVLRLAEDGPAIR 938 (984)
T ss_pred CCHhHccCCCCCCccccccCCCCccccceeccccccccCCeeEEEeeccccccceEeecccccccceEEEEeccCCCccc
Confidence 0 0 233222334444332 2356999999999999999
Q ss_pred cCCCCCCCEEEEECCEe
Q psy12206 147 DGRLQVGDKLIAVRNST 163 (164)
Q Consensus 147 ~G~L~~GD~Il~VNg~~ 163 (164)
+|+++.||+|++|||++
T Consensus 939 dGrm~VGDqi~eINGes 955 (984)
T KOG3209|consen 939 DGRMRVGDQITEINGES 955 (984)
T ss_pred cCceeecceEEEecCcc
Confidence 99999999999999986
No 2
>KOG3209|consensus
Probab=99.73 E-value=1.1e-17 Score=145.41 Aligned_cols=119 Identities=33% Similarity=0.516 Sum_probs=92.7
Q ss_pred eEEEEEEEcCCCCcCEEEecCCCCCCCCCCCcEEEEEeCCCChhhhcCCCCCCCEEEEECCeeccCCcCC----------
Q psy12206 41 KILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTSEDKRAS---------- 110 (164)
Q Consensus 41 ~~~~v~L~k~~~glGf~i~gg~~~~~~~~~~gv~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~v~~~~a~---------- 110 (164)
+...|.|.|...||||.|.||.+ ..+++||..|.+.++|+++|||++||.|++|+|++|.++...
T Consensus 649 k~ldV~L~rkesGFGFRiLGG~e-----p~qpi~iG~Iv~lGaAe~DGRL~~gDElv~iDG~pV~GksH~~vv~Lm~~AA 723 (984)
T KOG3209|consen 649 KELDVFLRRKESGFGFRILGGDE-----PGQPIYIGAIVPLGAAEEDGRLREGDELVCIDGIPVEGKSHSEVVDLMEAAA 723 (984)
T ss_pred cceeEEEEeeccccceEEecCCC-----CCCeeEEeeeeecccccccCcccCCCeEEEecCeeccCccHHHHHHHHHHHH
Confidence 67889999989999999999986 458999999999999999999999999999999999982111
Q ss_pred --Cce-----------------------------eEe-eeccCCCCcccC--CCCCeEEEEECCCChhhhcCCCCCCCEE
Q psy12206 111 --PGI-----------------------------FLC-NIAGGIGNQHIP--GDNGIYVTKIMDGGAAQVDGRLQVGDKL 156 (164)
Q Consensus 111 --~~v-----------------------------~l~-~~~~~~~~~~~~--~~~gv~I~~v~~gs~A~~~G~L~~GD~I 156 (164)
..| .|. +-..|+|+.... .+.+--|..|.+||||+++|+|++||+|
T Consensus 724 rnghV~LtVRRkv~~~~~~rsp~~s~~~~~~yDV~lhR~ENeGFGFVi~sS~~kp~sgiGrIieGSPAdRCgkLkVGDri 803 (984)
T KOG3209|consen 724 RNGHVNLTVRRKVRTGPARRSPRNSAAPSGPYDVVLHRKENEGFGFVIMSSQNKPESGIGRIIEGSPADRCGKLKVGDRI 803 (984)
T ss_pred hcCceEEEEeeeeeeccccCCcccccCCCCCeeeEEecccCCceeEEEEecccCCCCCccccccCChhHhhccccccceE
Confidence 112 221 112244432211 1222238899999999999999999999
Q ss_pred EEECCEeC
Q psy12206 157 IAVRNSTR 164 (164)
Q Consensus 157 l~VNg~~v 164 (164)
++|||+++
T Consensus 804 lAVNG~sI 811 (984)
T KOG3209|consen 804 LAVNGQSI 811 (984)
T ss_pred EEecCeee
Confidence 99999975
No 3
>KOG3580|consensus
Probab=99.53 E-value=1.7e-14 Score=124.22 Aligned_cols=67 Identities=30% Similarity=0.573 Sum_probs=60.9
Q ss_pred CCceEEEEEEEcCC-CCcCEEEecCCCCCCC-CCCCcEEEEEeCCCChhhhcCCCCCCCEEEEECCeeccC
Q psy12206 38 GNMKILDIELVKGN-KGLGFSIAGGIGNQHI-PGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTSED 106 (164)
Q Consensus 38 ~~~~~~~v~L~k~~-~glGf~i~gg~~~~~~-~~~~gv~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~v~~ 106 (164)
..|+-.+++|.|++ .|||+.|.||.++|.+ .+...++|+.|.||+|| .|+||.+|+|..|||+++++
T Consensus 5 ~IWEQhTvTL~kdp~rGFGIAiSGGRDnPhf~~getSiViSDVlpGGPA--eG~LQenDrvvMVNGvsMen 73 (1027)
T KOG3580|consen 5 LIWEQHTVTLQKDPKRGFGIAISGGRDNPHFENGETSIVISDVLPGGPA--EGLLQENDRVVMVNGVSMEN 73 (1027)
T ss_pred hhhhhheeeeecCCCCcceeEeecCCCCCCccCCceeEEEeeccCCCCc--ccccccCCeEEEEcCcchhh
Confidence 45889999999998 6899999999999876 56677999999999999 77899999999999999998
No 4
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=99.40 E-value=2.1e-12 Score=110.60 Aligned_cols=90 Identities=19% Similarity=0.239 Sum_probs=66.1
Q ss_pred EEEEEeCCCChhhhcCCCCCCCEEEEECCeeccC-Cc---------CCCceeE--ee----------ec-----------
Q psy12206 73 IYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTSED-KR---------ASPGIFL--CN----------IA----------- 119 (164)
Q Consensus 73 v~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~v~~-~~---------a~~~v~l--~~----------~~----------- 119 (164)
.+|..|.++|||+++| ||+||+|++|||+++.+ .+ ...++++ .. +.
T Consensus 128 ~lV~~V~~~SpA~kAG-Lk~GDvI~~vnG~~V~~~~~l~~~v~~~~~g~~v~v~v~R~gk~~~~~v~l~~~~~~~~~~~~ 206 (449)
T PRK10779 128 PVVGEIAPNSIAAQAQ-IAPGTELKAVDGIETPDWDAVRLALVSKIGDESTTITVAPFGSDQRRDKTLDLRHWAFEPDKQ 206 (449)
T ss_pred ccccccCCCCHHHHcC-CCCCCEEEEECCEEcCCHHHHHHHHHhhccCCceEEEEEeCCccceEEEEecccccccCcccc
Confidence 4799999999999999 99999999999999988 11 1112222 10 00
Q ss_pred ---cCCCCcccCCCCCeEEEEECCCChhhhcCCCCCCCEEEEECCEeC
Q psy12206 120 ---GGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTR 164 (164)
Q Consensus 120 ---~~~~~~~~~~~~gv~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v 164 (164)
...+........+..|..|.++|||+++| |++||+|++|||+++
T Consensus 207 ~~~~~lGl~~~~~~~~~vV~~V~~~SpA~~AG-L~~GDvIl~Ing~~V 253 (449)
T PRK10779 207 DPVSSLGIRPRGPQIEPVLAEVQPNSAASKAG-LQAGDRIVKVDGQPL 253 (449)
T ss_pred chhhcccccccCCCcCcEEEeeCCCCHHHHcC-CCCCCEEEEECCEEc
Confidence 00111111223357899999999999999 999999999999875
No 5
>KOG3580|consensus
Probab=99.35 E-value=1.9e-12 Score=111.81 Aligned_cols=56 Identities=29% Similarity=0.507 Sum_probs=48.0
Q ss_pred ceEEEEEEEcCC--CCcCEEEecCCCCCCCCCCCcEEEEEeCCCChhhhcCCCCCCCEEEEECCeeccC
Q psy12206 40 MKILDIELVKGN--KGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTSED 106 (164)
Q Consensus 40 ~~~~~v~L~k~~--~glGf~i~gg~~~~~~~~~~gv~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~v~~ 106 (164)
..+..+.|.|.. ..||+.+.. .+||.+|...+.|+++|.|+.||.||+|||...++
T Consensus 197 ~~p~kv~LvKsR~nEEyGlrLgS-----------qIFvKeit~~gLAardgnlqEGDiiLkINGtvteN 254 (1027)
T KOG3580|consen 197 PGPIKVLLVKSRANEEYGLRLGS-----------QIFVKEITRTGLAARDGNLQEGDIILKINGTVTEN 254 (1027)
T ss_pred CCcceEEEEeeccchhhcccccc-----------hhhhhhhcccchhhccCCcccccEEEEECcEeecc
Confidence 456777887765 569998754 48999999999999999999999999999998887
No 6
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=99.35 E-value=6.2e-12 Score=106.95 Aligned_cols=92 Identities=13% Similarity=0.125 Sum_probs=68.5
Q ss_pred CcEEEEEeCCCChhhhcCCCCCCCEEEEECCeeccC-CcCC-------Cc--eeEeee------ccCCCCcccCCCCCeE
Q psy12206 71 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTSED-KRAS-------PG--IFLCNI------AGGIGNQHIPGDNGIY 134 (164)
Q Consensus 71 ~gv~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~v~~-~~a~-------~~--v~l~~~------~~~~~~~~~~~~~gv~ 134 (164)
.+.+|..|.++|||+++| |++||.|++|||.++.+ ++.. .. +++... .-..+........++.
T Consensus 128 ~g~~V~~V~~~SpA~~AG-L~~GDvI~~vng~~v~~~~dl~~~ia~~~~~v~~~I~r~g~~~~l~v~l~~~~~~~~~g~v 206 (420)
T TIGR00054 128 VGPVIELLDKNSIALEAG-IEPGDEILSVNGNKIPGFKDVRQQIADIAGEPMVEILAERENWTFEVMKELIPRGPKIEPV 206 (420)
T ss_pred CCceeeccCCCCHHHHcC-CCCCCEEEEECCEEcCCHHHHHHHHHhhcccceEEEEEecCceEecccccceecCCCcCcE
Confidence 577999999999999999 99999999999999988 2111 11 222110 0001111112234789
Q ss_pred EEEECCCChhhhcCCCCCCCEEEEECCEeC
Q psy12206 135 VTKIMDGGAAQVDGRLQVGDKLIAVRNSTR 164 (164)
Q Consensus 135 I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v 164 (164)
|.+|.++|||+++| |++||+|++|||+++
T Consensus 207 V~~V~~~SpA~~aG-L~~GD~Iv~Vng~~V 235 (420)
T TIGR00054 207 LSDVTPNSPAEKAG-LKEGDYIQSINGEKL 235 (420)
T ss_pred EEEECCCCHHHHcC-CCCCCEEEEECCEEC
Confidence 99999999999999 999999999999875
No 7
>PRK10139 serine endoprotease; Provisional
Probab=99.35 E-value=1.2e-11 Score=106.27 Aligned_cols=93 Identities=18% Similarity=0.372 Sum_probs=68.8
Q ss_pred CCcEEEEEeCCCChhhhcCCCCCCCEEEEECCeeccC--------C--cCCCceeE------------eeeccC------
Q psy12206 70 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTSED--------K--RASPGIFL------------CNIAGG------ 121 (164)
Q Consensus 70 ~~gv~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~v~~--------~--~a~~~v~l------------~~~~~~------ 121 (164)
..|++|..|.++|||+++| |++||.|++|||+++.+ . .....+.+ ..+...
T Consensus 289 ~~Gv~V~~V~~~SpA~~AG-L~~GDvIl~InG~~V~s~~dl~~~l~~~~~g~~v~l~V~R~G~~~~l~v~~~~~~~~~~~ 367 (455)
T PRK10139 289 QRGAFVSEVLPNSGSAKAG-VKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDTSTSSSAS 367 (455)
T ss_pred CCceEEEEECCCChHHHCC-CCCCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEECCCCCcccc
Confidence 4689999999999999999 99999999999999988 1 11222222 111000
Q ss_pred -CCCcc-c-----------CCCCCeEEEEECCCChhhhcCCCCCCCEEEEECCEeC
Q psy12206 122 -IGNQH-I-----------PGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTR 164 (164)
Q Consensus 122 -~~~~~-~-----------~~~~gv~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v 164 (164)
.+... . ....|++|..|.++|||+++| |++||+|++|||+++
T Consensus 368 ~~~~~~~~~g~~l~~~~~~~~~~Gv~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v 422 (455)
T PRK10139 368 AEMITPALQGATLSDGQLKDGTKGIKIDEVVKGSPAAQAG-LQKDDVIIGVNRDRV 422 (455)
T ss_pred cccccccccccEecccccccCCCceEEEEeCCCChHHHcC-CCCCCEEEEECCEEc
Confidence 00000 0 012489999999999999999 999999999999875
No 8
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=99.34 E-value=6.4e-12 Score=106.99 Aligned_cols=93 Identities=25% Similarity=0.428 Sum_probs=69.4
Q ss_pred CCcEEEEEeCCCChhhhcCCCCCCCEEEEECCeeccC--------Cc--CCCceeE----------eeec--c-------
Q psy12206 70 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTSED--------KR--ASPGIFL----------CNIA--G------- 120 (164)
Q Consensus 70 ~~gv~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~v~~--------~~--a~~~v~l----------~~~~--~------- 120 (164)
..+++|..|.++|||+++| |++||+|++|||.++.+ .. ....+++ +.+. .
T Consensus 256 ~~Gv~V~~V~~~spA~~aG-L~~GDvI~~Vng~~i~~~~~~~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~~~~~~~~~ 334 (428)
T TIGR02037 256 QRGALVAQVLPGSPAEKAG-LKAGDVILSVNGKPISSFADLRRAIGTLKPGKKVTLGILRKGKEKTITVTLGASPEEQAS 334 (428)
T ss_pred CCceEEEEccCCCChHHcC-CCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEECcCCCcccc
Confidence 3689999999999999999 99999999999999987 11 1122222 1110 0
Q ss_pred ----CCCCcc-------------cCCCCCeEEEEECCCChhhhcCCCCCCCEEEEECCEeC
Q psy12206 121 ----GIGNQH-------------IPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTR 164 (164)
Q Consensus 121 ----~~~~~~-------------~~~~~gv~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v 164 (164)
..|... .....|++|.+|.++|||+++| |++||+|++|||++|
T Consensus 335 ~~~~~lGi~~~~l~~~~~~~~~l~~~~~Gv~V~~V~~~SpA~~aG-L~~GDvI~~Ing~~V 394 (428)
T TIGR02037 335 SSNPFLGLTVANLSPEIRKELRLKGDVKGVVVTKVVSGSPAARAG-LQPGDVILSVNQQPV 394 (428)
T ss_pred ccccccceEEecCCHHHHHHcCCCcCcCceEEEEeCCCCHHHHcC-CCCCCEEEEECCEEc
Confidence 011100 0112589999999999999999 999999999999875
No 9
>KOG3605|consensus
Probab=99.33 E-value=1.5e-12 Score=112.93 Aligned_cols=115 Identities=23% Similarity=0.447 Sum_probs=84.4
Q ss_pred eEEEEEEEcCC-CCcCEEEec-CCCCCCCCCCCcEEEEEeCCCChhhhcCCCCCCCEEEEECCeeccC----------Cc
Q psy12206 41 KILDIELVKGN-KGLGFSIAG-GIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTSED----------KR 108 (164)
Q Consensus 41 ~~~~v~L~k~~-~glGf~i~g-g~~~~~~~~~~gv~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~v~~----------~~ 108 (164)
..++|.|.|.+ ..||+.|+- |+++-. +.++|.+..++|||+++|+|..||+|++|||.++.+ +.
T Consensus 645 ~qKEVvv~K~kGEiLGVViVESGWGSmL----PTVViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs~Ik~ 720 (829)
T KOG3605|consen 645 NQKEVVLEKHKGEILGVVIVESGWGSIL----PTVVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKG 720 (829)
T ss_pred ccceeeeecccCceeeEEEEecCccccc----hHHHHHhcccCChhhhcCCccccceeEeecCceeccccHHHHHHHHhc
Confidence 35668888876 569999774 665543 678999999999999999999999999999999988 11
Q ss_pred CC-------------CceeE--eee--ccCCCCcccCCCCCeEEEEECCCChhhhcCCCCCCCEEEEECCEeC
Q psy12206 109 AS-------------PGIFL--CNI--AGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTR 164 (164)
Q Consensus 109 a~-------------~~v~l--~~~--~~~~~~~~~~~~~gv~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v 164 (164)
.. |.+++ ... .--+||.. +.| +|.++..|+.|++.| +|+|.||++|||++|
T Consensus 721 ~KnQT~VkltiV~cpPV~~V~I~RPd~kyQLGFSV---QNG-iICSLlRGGIAERGG-VRVGHRIIEINgQSV 788 (829)
T KOG3605|consen 721 LKNQTAVKLNIVSCPPVTTVLIRRPDLRYQLGFSV---QNG-IICSLLRGGIAERGG-VRVGHRIIEINGQSV 788 (829)
T ss_pred ccccceEEEEEecCCCceEEEeecccchhhcccee---eCc-EeehhhcccchhccC-ceeeeeEEEECCceE
Confidence 11 11111 111 01122221 223 378999999999999 999999999999986
No 10
>PRK10942 serine endoprotease; Provisional
Probab=99.32 E-value=1.8e-11 Score=105.56 Aligned_cols=93 Identities=20% Similarity=0.375 Sum_probs=69.0
Q ss_pred CCcEEEEEeCCCChhhhcCCCCCCCEEEEECCeeccC-C-------cC--CCceeE------------eeecc-------
Q psy12206 70 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTSED-K-------RA--SPGIFL------------CNIAG------- 120 (164)
Q Consensus 70 ~~gv~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~v~~-~-------~a--~~~v~l------------~~~~~------- 120 (164)
..|++|..|.++|||+++| |++||.|++|||+.+.+ . .. ...+.+ +.+..
T Consensus 310 ~~GvlV~~V~~~SpA~~AG-L~~GDvIl~InG~~V~s~~dl~~~l~~~~~g~~v~l~v~R~G~~~~v~v~l~~~~~~~~~ 388 (473)
T PRK10942 310 QRGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKPVNVNVELQQSSQNQVD 388 (473)
T ss_pred CCceEEEEECCCChHHHcC-CCCCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEEEECCeEEEEEEEeCcCcccccc
Confidence 4689999999999999999 99999999999999998 1 11 112222 11100
Q ss_pred ----CCCCc---cc--CCCCCeEEEEECCCChhhhcCCCCCCCEEEEECCEeC
Q psy12206 121 ----GIGNQ---HI--PGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTR 164 (164)
Q Consensus 121 ----~~~~~---~~--~~~~gv~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v 164 (164)
..+.. +. ....|++|.+|.++|+|+++| |++||+|++|||++|
T Consensus 389 ~~~~~lGl~g~~l~~~~~~~gvvV~~V~~~S~A~~aG-L~~GDvIv~VNg~~V 440 (473)
T PRK10942 389 SSNIFNGIEGAELSNKGGDKGVVVDNVKPGTPAAQIG-LKKGDVIIGANQQPV 440 (473)
T ss_pred cccccccceeeecccccCCCCeEEEEeCCCChHHHcC-CCCCCEEEEECCEEc
Confidence 01110 01 122489999999999999999 999999999999875
No 11
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=99.25 E-value=2.3e-11 Score=80.46 Aligned_cols=58 Identities=31% Similarity=0.717 Sum_probs=50.9
Q ss_pred EEEEEcC-CCCcCEEEecCCCCCCCCCCCcEEEEEeCCCChhhhcCCCCCCCEEEEECCeeccC
Q psy12206 44 DIELVKG-NKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTSED 106 (164)
Q Consensus 44 ~v~L~k~-~~glGf~i~gg~~~~~~~~~~gv~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~v~~ 106 (164)
+|+|.|. ..+|||++.++.+.. ..++||..|.|+|||+++| |++||+|++|||.++.+
T Consensus 1 ~v~l~k~~~~~lG~~l~~~~~~~----~~~~~V~~v~~~~~a~~~g-l~~GD~Il~INg~~v~~ 59 (81)
T PF00595_consen 1 QVTLEKSGNGPLGFTLRGGSDND----EKGVFVSSVVPGSPAERAG-LKVGDRILEINGQSVRG 59 (81)
T ss_dssp EEEEEESTTSBSSEEEEEESTSS----SEEEEEEEECTTSHHHHHT-SSTTEEEEEETTEESTT
T ss_pred CEEEEeCCCCCcCEEEEecCCCC----cCCEEEEEEeCCChHHhcc-cchhhhhheeCCEeCCC
Confidence 4788884 478999999987532 2589999999999999999 99999999999999987
No 12
>KOG3550|consensus
Probab=99.14 E-value=8.1e-11 Score=86.12 Aligned_cols=65 Identities=35% Similarity=0.674 Sum_probs=59.2
Q ss_pred CCCceEEEEEEEcCCCCcCEEEecCCCCCCCCCCCcEEEEEeCCCChhhhcCCCCCCCEEEEECCeeccC
Q psy12206 37 QGNMKILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTSED 106 (164)
Q Consensus 37 ~~~~~~~~v~L~k~~~glGf~i~gg~~~~~~~~~~gv~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~v~~ 106 (164)
+....++.|+|.|-..||||.+.||++ ...++||++|.||+.|++-|.|+.||++++|||+++++
T Consensus 86 eghahprvvelpktdeglgfnvmggke-----qnspiyisriipggvadrhgglkrgdqllsvngvsveg 150 (207)
T KOG3550|consen 86 EGHAHPRVVELPKTDEGLGFNVMGGKE-----QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 150 (207)
T ss_pred ccCCCCceeecCccccccceeeccCcc-----cCCceEEEeecCCccccccCcccccceeEeecceeecc
Confidence 344578889999988999999999987 45789999999999999999999999999999999998
No 13
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=98.92 E-value=8.5e-09 Score=67.62 Aligned_cols=58 Identities=38% Similarity=0.738 Sum_probs=49.3
Q ss_pred EEEEEEcC-CCCcCEEEecCCCCCCCCCCCcEEEEEeCCCChhhhcCCCCCCCEEEEECCeeccC
Q psy12206 43 LDIELVKG-NKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTSED 106 (164)
Q Consensus 43 ~~v~L~k~-~~glGf~i~gg~~~~~~~~~~gv~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~v~~ 106 (164)
+.+.+.+. ..+|||.+.+.... ..+++|..|.++++|+++| |++||+|++|||.++.+
T Consensus 2 ~~~~l~~~~~~~~G~~~~~~~~~-----~~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~ 60 (82)
T cd00992 2 RTVTLRKDPGGGLGFSLRGGKDS-----GGGIFVSRVEPGGPAERGG-LRVGDRILEVNGVSVEG 60 (82)
T ss_pred EEEEEEeCCCCCcCEEEeCcccC-----CCCeEEEEECCCChHHhCC-CCCCCEEEEECCEEcCc
Confidence 45778777 47899999876432 3689999999999999998 99999999999999984
No 14
>KOG3553|consensus
Probab=98.82 E-value=1.7e-08 Score=69.00 Aligned_cols=52 Identities=38% Similarity=0.686 Sum_probs=45.0
Q ss_pred cCEEEecCCCC-----CCCCCCCcEEEEEeCCCChhhhcCCCCCCCEEEEECCeeccC
Q psy12206 54 LGFSIAGGIGN-----QHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTSED 106 (164)
Q Consensus 54 lGf~i~gg~~~-----~~~~~~~gv~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~v~~ 106 (164)
+||.|.||.+- |++-.+.|+||++|..||||+.+| |+.+|.|+++||-+..-
T Consensus 37 ~GFkIGGGIDQDp~k~Pf~ytD~GiYvT~V~eGsPA~~AG-LrihDKIlQvNG~DfTM 93 (124)
T KOG3553|consen 37 LGFKIGGGIDQDPSKNPFSYTDKGIYVTRVSEGSPAEIAG-LRIHDKILQVNGWDFTM 93 (124)
T ss_pred EEEEeccccCCCcccCCCCcCCccEEEEEeccCChhhhhc-ceecceEEEecCceeEE
Confidence 89999998764 333467899999999999999999 99999999999977643
No 15
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=98.81 E-value=3.8e-08 Score=64.57 Aligned_cols=58 Identities=38% Similarity=0.685 Sum_probs=49.0
Q ss_pred EEEEEEcCCCCcCEEEecCCCCCCCCCCCcEEEEEeCCCChhhhcCCCCCCCEEEEECCeeccC
Q psy12206 43 LDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTSED 106 (164)
Q Consensus 43 ~~v~L~k~~~glGf~i~gg~~~~~~~~~~gv~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~v~~ 106 (164)
..+.+.+....|||.+...... ..+++|..|.++++|+++| |++||+|++|||.++.+
T Consensus 3 ~~~~~~~~~~~~G~~~~~~~~~-----~~~~~i~~v~~~s~a~~~g-l~~GD~I~~In~~~v~~ 60 (85)
T smart00228 3 RLVELEKGGGGLGFSLVGGKDE-----GGGVVVSSVVPGSPAAKAG-LKVGDVILEVNGTSVEG 60 (85)
T ss_pred EEEEEEECCCcccEEEECCCCC-----CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCC
Confidence 4567777777899999875421 1689999999999999999 99999999999999976
No 16
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=98.75 E-value=3.7e-08 Score=62.79 Aligned_cols=46 Identities=41% Similarity=0.734 Sum_probs=41.2
Q ss_pred CcCEEEecCCCCCCCCCCCcEEEEEeCCCChhhhcCCCCCCCEEEEECCeeccC
Q psy12206 53 GLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTSED 106 (164)
Q Consensus 53 glGf~i~gg~~~~~~~~~~gv~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~v~~ 106 (164)
+|||.+....+ .+++|..|.+++||+.+| |++||+|++|||.++.+
T Consensus 2 ~~G~~~~~~~~-------~~~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~v~~ 47 (70)
T cd00136 2 GLGFSIRGGTE-------GGVVVLSVEPGSPAERAG-LQAGDVILAVNGTDVKN 47 (70)
T ss_pred CccEEEecCCC-------CCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCC
Confidence 68999987542 479999999999999999 99999999999999977
No 17
>KOG1892|consensus
Probab=98.69 E-value=3.7e-08 Score=89.14 Aligned_cols=65 Identities=37% Similarity=0.674 Sum_probs=56.9
Q ss_pred CceEEEEEEEcCCCCcCEEEecCCCCCCCCCCCcEEEEEeCCCChhhhcCCCCCCCEEEEECCeeccC
Q psy12206 39 NMKILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTSED 106 (164)
Q Consensus 39 ~~~~~~v~L~k~~~glGf~i~gg~~~~~~~~~~gv~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~v~~ 106 (164)
+.++.+|+|.|. +|+|++|+..++..- ...||||+.|.+|++|+.+|+|++||++|+|||.++-+
T Consensus 931 ~pei~~vtL~Kn-nGmGLSIVAAkGaGq--~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiG 995 (1629)
T KOG1892|consen 931 EPEIITVTLKKN-NGMGLSIVAAKGAGQ--RKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIG 995 (1629)
T ss_pred CCceEEEEEecc-CCceEEEEeeccCCc--cccceEEEEeccCCccccccccccCceeeeecCccccc
Confidence 457899999887 999999987654322 45899999999999999999999999999999999988
No 18
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=98.64 E-value=9e-08 Score=63.33 Aligned_cols=47 Identities=28% Similarity=0.526 Sum_probs=38.9
Q ss_pred CcCEEEecCCCCCCCCCCCcEEEEEeCCCChhhhcCCCCCCCEEEEECCeeccC
Q psy12206 53 GLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTSED 106 (164)
Q Consensus 53 glGf~i~gg~~~~~~~~~~gv~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~v~~ 106 (164)
.+|+.+..... ..+++|..|.++|||+++| |++||.|++|||.++.+
T Consensus 2 ~lGv~~~~~~~------~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~ 48 (82)
T PF13180_consen 2 GLGVTVQNLSD------TGGVVVVSVIPGSPAAKAG-LQPGDIILAINGKPVNS 48 (82)
T ss_dssp E-SEEEEECSC------SSSEEEEEESTTSHHHHTT-S-TTEEEEEETTEESSS
T ss_pred EECeEEEEccC------CCeEEEEEeCCCCcHHHCC-CCCCcEEEEECCEEcCC
Confidence 47777776432 2589999999999999999 99999999999999977
No 19
>KOG3553|consensus
Probab=98.63 E-value=5.7e-08 Score=66.44 Aligned_cols=48 Identities=35% Similarity=0.640 Sum_probs=41.1
Q ss_pred eeeccCCCCcc-----cCCCCCeEEEEECCCChhhhcCCCCCCCEEEEECCEeC
Q psy12206 116 CNIAGGIGNQH-----IPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTR 164 (164)
Q Consensus 116 ~~~~~~~~~~~-----~~~~~gv~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v 164 (164)
|++-||.+... ...+.|+||+.|.+||||+.+| ||.+|.|+.+||.++
T Consensus 39 FkIGGGIDQDp~k~Pf~ytD~GiYvT~V~eGsPA~~AG-LrihDKIlQvNG~Df 91 (124)
T KOG3553|consen 39 FKIGGGIDQDPSKNPFSYTDKGIYVTRVSEGSPAEIAG-LRIHDKILQVNGWDF 91 (124)
T ss_pred EEeccccCCCcccCCCCcCCccEEEEEeccCChhhhhc-ceecceEEEecCcee
Confidence 88888877643 2356799999999999999999 999999999999764
No 20
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=98.60 E-value=5.4e-08 Score=64.10 Aligned_cols=33 Identities=27% Similarity=0.730 Sum_probs=31.4
Q ss_pred CCeEEEEECCCChhhhcCCCCCCCEEEEECCEeC
Q psy12206 131 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTR 164 (164)
Q Consensus 131 ~gv~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v 164 (164)
.++||.+|.++|||+++| |++||+|++|||+++
T Consensus 25 ~~~~V~~v~~~~~a~~~g-l~~GD~Il~INg~~v 57 (81)
T PF00595_consen 25 KGVFVSSVVPGSPAERAG-LKVGDRILEINGQSV 57 (81)
T ss_dssp EEEEEEEECTTSHHHHHT-SSTTEEEEEETTEES
T ss_pred CCEEEEEEeCCChHHhcc-cchhhhhheeCCEeC
Confidence 499999999999999999 999999999999985
No 21
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=98.55 E-value=7.6e-08 Score=63.71 Aligned_cols=33 Identities=30% Similarity=0.562 Sum_probs=30.4
Q ss_pred CCeEEEEECCCChhhhcCCCCCCCEEEEECCEeC
Q psy12206 131 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTR 164 (164)
Q Consensus 131 ~gv~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v 164 (164)
.|++|.+|.++|||+++| |++||+|++|||.+|
T Consensus 14 ~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v 46 (82)
T PF13180_consen 14 GGVVVVSVIPGSPAAKAG-LQPGDIILAINGKPV 46 (82)
T ss_dssp SSEEEEEESTTSHHHHTT-S-TTEEEEEETTEES
T ss_pred CeEEEEEeCCCCcHHHCC-CCCCcEEEEECCEEc
Confidence 499999999999999999 999999999999875
No 22
>KOG3571|consensus
Probab=98.54 E-value=1.8e-07 Score=79.81 Aligned_cols=66 Identities=38% Similarity=0.659 Sum_probs=58.4
Q ss_pred CCceEEEEEEEcCC-CCcCEEEecCCCCCCCCCCCcEEEEEeCCCChhhhcCCCCCCCEEEEECCeeccC
Q psy12206 38 GNMKILDIELVKGN-KGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTSED 106 (164)
Q Consensus 38 ~~~~~~~v~L~k~~-~glGf~i~gg~~~~~~~~~~gv~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~v~~ 106 (164)
...++.+|.|.-+. .=||++|+|..... ++.|+||.+|.++|+.+.+|++.+||.||+||.++.++
T Consensus 246 mslnIITV~LnMe~vnfLGiSivgqsn~r---gDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFEN 312 (626)
T KOG3571|consen 246 MSLNIITVTLNMETVNFLGISIVGQSNAR---GDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFEN 312 (626)
T ss_pred cceeEEEEEecccccccceeEeecccCcC---CCCceEEeeeccCceeeccCccCccceEEEeeecchhh
Confidence 44578899998777 45999999976554 57899999999999999999999999999999999998
No 23
>KOG3549|consensus
Probab=98.51 E-value=1.8e-07 Score=76.93 Aligned_cols=63 Identities=29% Similarity=0.456 Sum_probs=57.7
Q ss_pred CceEEEEEEEcCC-CCcCEEEecCCCCCCCCCCCcEEEEEeCCCChhhhcCCCCCCCEEEEECCeeccC
Q psy12206 39 NMKILDIELVKGN-KGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTSED 106 (164)
Q Consensus 39 ~~~~~~v~L~k~~-~glGf~i~gg~~~~~~~~~~gv~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~v~~ 106 (164)
....++|+|.|.+ +|||++|.||.+ +..+++|+.|.++.+|+..|.|-.||-|++|||+.+..
T Consensus 52 ~s~eRtVtirRQ~vGGlGLSIKGGaE-----Hn~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~ 115 (505)
T KOG3549|consen 52 ESKERTVTIRRQKVGGLGLSIKGGAE-----HNLPVVISKIYKDQAADITGQLFVGDAILQVNGIYVTA 115 (505)
T ss_pred cCCceeEEEEeeecCcceeeeccccc-----cCccEEeehhhhhhhhhhcCceEeeeeeEEeccEEeec
Confidence 3478889999888 789999999987 45789999999999999999999999999999999988
No 24
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=98.50 E-value=3e-07 Score=58.54 Aligned_cols=32 Identities=34% Similarity=0.573 Sum_probs=30.6
Q ss_pred CeEEEEECCCChhhhcCCCCCCCEEEEECCEeC
Q psy12206 132 GIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTR 164 (164)
Q Consensus 132 gv~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v 164 (164)
+++|.+|.+++||+.+| |++||+|++|||+++
T Consensus 14 ~~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~v 45 (70)
T cd00136 14 GVVVLSVEPGSPAERAG-LQAGDVILAVNGTDV 45 (70)
T ss_pred CEEEEEeCCCCHHHHcC-CCCCCEEEEECCEEC
Confidence 89999999999999999 999999999999875
No 25
>KOG3651|consensus
Probab=98.47 E-value=3.5e-07 Score=73.94 Aligned_cols=60 Identities=32% Similarity=0.575 Sum_probs=52.2
Q ss_pred EEEEEEEcCCCC-cCEEEecCCCCCCCCCCCcEEEEEeCCCChhhhcCCCCCCCEEEEECCeeccC
Q psy12206 42 ILDIELVKGNKG-LGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTSED 106 (164)
Q Consensus 42 ~~~v~L~k~~~g-lGf~i~gg~~~~~~~~~~gv~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~v~~ 106 (164)
+-+|+|+|+..+ .|++|.||. |+ -+-+||.+|..++||+++|+++.||.|+.|||+++.+
T Consensus 5 ~~~v~ltKD~~nliGISIGGGa--py---CPClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKG 65 (429)
T KOG3651|consen 5 SETVELTKDEKNLIGISIGGGA--PY---CPCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKG 65 (429)
T ss_pred cCcEEEeeccccceeEEecCCC--Cc---CCeEEEEEeccCCchhccCccccCCeeEEecceeecC
Confidence 446889998855 999999885 33 2457999999999999999999999999999999998
No 26
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.42 E-value=6.1e-07 Score=59.25 Aligned_cols=46 Identities=24% Similarity=0.589 Sum_probs=39.5
Q ss_pred CCcCEEEecCCCCCCCCCCCcEEEEEeCCCChhhhcCCCCCCCEEEEECCeeccC
Q psy12206 52 KGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTSED 106 (164)
Q Consensus 52 ~glGf~i~gg~~~~~~~~~~gv~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~v~~ 106 (164)
.+||+.+... ..+++|..|.+++||+++| |++||+|++|||.++.+
T Consensus 2 ~~lG~~~~~~--------~~~~~V~~v~~~s~a~~~g-l~~GD~I~~vng~~i~~ 47 (85)
T cd00988 2 GGIGLELKYD--------DGGLVITSVLPGSPAAKAG-IKAGDIIVAIDGEPVDG 47 (85)
T ss_pred eEEEEEEEEc--------CCeEEEEEecCCCCHHHcC-CCCCCEEEEECCEEcCC
Confidence 3578887542 2578999999999999999 99999999999999876
No 27
>KOG3551|consensus
Probab=98.37 E-value=2.8e-07 Score=76.60 Aligned_cols=60 Identities=37% Similarity=0.555 Sum_probs=54.2
Q ss_pred EEEEEEEcCC-CCcCEEEecCCCCCCCCCCCcEEEEEeCCCChhhhcCCCCCCCEEEEECCeeccC
Q psy12206 42 ILDIELVKGN-KGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTSED 106 (164)
Q Consensus 42 ~~~v~L~k~~-~glGf~i~gg~~~~~~~~~~gv~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~v~~ 106 (164)
.+.|++.|.. +|||++|.||+++ ..+++|+.|.+|-+|++.+.|..||-|++|||.++.+
T Consensus 85 ~R~V~V~K~d~gGLGISIKGGreN-----kMPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~ 145 (506)
T KOG3551|consen 85 ERRVRVVKQDAGGLGISIKGGREN-----KMPILISKIFKGLAADQTGALFLGDAILSVNGEDLRD 145 (506)
T ss_pred cceeEEEEecCCcceEEeecCccc-----CCceehhHhccccccccccceeeccEEEEecchhhhh
Confidence 3677777755 8899999999985 4799999999999999999999999999999999988
No 28
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.34 E-value=1.3e-06 Score=57.01 Aligned_cols=35 Identities=31% Similarity=0.320 Sum_probs=32.9
Q ss_pred CcEEEEEeCCCChhhhcCCCCCCCEEEEECCeeccC
Q psy12206 71 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTSED 106 (164)
Q Consensus 71 ~gv~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~v~~ 106 (164)
.++.|..|.++|+|+.+| |++||+|++|||.++.+
T Consensus 12 ~~~~V~~V~~~s~a~~aG-l~~GD~I~~Ing~~v~~ 46 (80)
T cd00990 12 GLGKVTFVRDDSPADKAG-LVAGDELVAVNGWRVDA 46 (80)
T ss_pred CcEEEEEECCCChHHHhC-CCCCCEEEEECCEEhHH
Confidence 468999999999999999 99999999999999976
No 29
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.32 E-value=1.1e-06 Score=57.39 Aligned_cols=34 Identities=32% Similarity=0.322 Sum_probs=31.4
Q ss_pred CCCeEEEEECCCChhhhcCCCCCCCEEEEECCEeC
Q psy12206 130 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTR 164 (164)
Q Consensus 130 ~~gv~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v 164 (164)
..++.|..|.++|+|+++| |++||+|++|||+++
T Consensus 11 ~~~~~V~~V~~~s~a~~aG-l~~GD~I~~Ing~~v 44 (80)
T cd00990 11 EGLGKVTFVRDDSPADKAG-LVAGDELVAVNGWRV 44 (80)
T ss_pred CCcEEEEEECCCChHHHhC-CCCCCEEEEECCEEh
Confidence 4579999999999999999 999999999999874
No 30
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.30 E-value=1.6e-06 Score=56.98 Aligned_cols=34 Identities=18% Similarity=0.361 Sum_probs=31.7
Q ss_pred CCCeEEEEECCCChhhhcCCCCCCCEEEEECCEeC
Q psy12206 130 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTR 164 (164)
Q Consensus 130 ~~gv~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v 164 (164)
..|+.|.+|.++|||+++| |++||+|++|||.++
T Consensus 9 ~~Gv~V~~V~~~spa~~aG-L~~GDiI~~Ing~~v 42 (79)
T cd00991 9 VAGVVIVGVIVGSPAENAV-LHTGDVIYSINGTPI 42 (79)
T ss_pred CCcEEEEEECCCChHHhcC-CCCCCEEEEECCEEc
Confidence 4599999999999999999 999999999999875
No 31
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=98.30 E-value=1.7e-06 Score=56.49 Aligned_cols=33 Identities=36% Similarity=0.783 Sum_probs=31.1
Q ss_pred CCeEEEEECCCChhhhcCCCCCCCEEEEECCEeC
Q psy12206 131 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTR 164 (164)
Q Consensus 131 ~gv~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v 164 (164)
.+++|..|.+++||+++| |++||+|++|||+++
T Consensus 26 ~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i 58 (82)
T cd00992 26 GGIFVSRVEPGGPAERGG-LRVGDRILEVNGVSV 58 (82)
T ss_pred CCeEEEEECCCChHHhCC-CCCCCEEEEECCEEc
Confidence 589999999999999998 999999999999875
No 32
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.29 E-value=1.7e-06 Score=56.81 Aligned_cols=37 Identities=16% Similarity=0.341 Sum_probs=34.4
Q ss_pred CCCcEEEEEeCCCChhhhcCCCCCCCEEEEECCeeccC
Q psy12206 69 GDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTSED 106 (164)
Q Consensus 69 ~~~gv~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~v~~ 106 (164)
...|++|..|.++|||+++| |++||.|++|||.++.+
T Consensus 8 ~~~Gv~V~~V~~~spa~~aG-L~~GDiI~~Ing~~v~~ 44 (79)
T cd00991 8 AVAGVVIVGVIVGSPAENAV-LHTGDVIYSINGTPITT 44 (79)
T ss_pred cCCcEEEEEECCCChHHhcC-CCCCCEEEEECCEEcCC
Confidence 34689999999999999999 99999999999999987
No 33
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.27 E-value=9.9e-07 Score=58.24 Aligned_cols=35 Identities=26% Similarity=0.590 Sum_probs=32.0
Q ss_pred CCCCeEEEEECCCChhhhcCCCCCCCEEEEECCEeC
Q psy12206 129 GDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTR 164 (164)
Q Consensus 129 ~~~gv~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v 164 (164)
...+++|..+.+++||+++| |++||+|++|||+++
T Consensus 11 ~~~~~~V~~v~~~s~a~~~g-l~~GD~I~~vng~~i 45 (85)
T cd00988 11 DDGGLVITSVLPGSPAAKAG-IKAGDIIVAIDGEPV 45 (85)
T ss_pred cCCeEEEEEecCCCCHHHcC-CCCCCEEEEECCEEc
Confidence 34689999999999999999 999999999999874
No 34
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=98.23 E-value=2.8e-06 Score=55.57 Aligned_cols=33 Identities=30% Similarity=0.620 Sum_probs=31.3
Q ss_pred CCeEEEEECCCChhhhcCCCCCCCEEEEECCEeC
Q psy12206 131 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTR 164 (164)
Q Consensus 131 ~gv~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v 164 (164)
.+++|..|.++++|+++| |++||+|++|||+++
T Consensus 26 ~~~~i~~v~~~s~a~~~g-l~~GD~I~~In~~~v 58 (85)
T smart00228 26 GGVVVSSVVPGSPAAKAG-LKVGDVILEVNGTSV 58 (85)
T ss_pred CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEEC
Confidence 589999999999999999 999999999999864
No 35
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.23 E-value=2.8e-06 Score=55.17 Aligned_cols=35 Identities=20% Similarity=0.435 Sum_probs=32.8
Q ss_pred CcEEEEEeCCCChhhhcCCCCCCCEEEEECCeeccC
Q psy12206 71 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTSED 106 (164)
Q Consensus 71 ~gv~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~v~~ 106 (164)
.++.|..|.++++|+++| |++||.|++|||.++.+
T Consensus 12 ~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~ 46 (79)
T cd00989 12 IEPVIGEVVPGSPAAKAG-LKAGDRILAINGQKIKS 46 (79)
T ss_pred cCcEEEeECCCCHHHHcC-CCCCCEEEEECCEECCC
Confidence 458999999999999999 99999999999999987
No 36
>KOG3550|consensus
Probab=98.15 E-value=3.1e-06 Score=62.20 Aligned_cols=54 Identities=30% Similarity=0.563 Sum_probs=41.0
Q ss_pred Cc-eeEeeeccCCCCcccC---CCCCeEEEEECCCChhhhcCCCCCCCEEEEECCEeC
Q psy12206 111 PG-IFLCNIAGGIGNQHIP---GDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTR 164 (164)
Q Consensus 111 ~~-v~l~~~~~~~~~~~~~---~~~gv~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v 164 (164)
|+ |+|-+...|+|+.... .+.++||+.|.||+.|++.|.|+.||++++|||.+|
T Consensus 91 prvvelpktdeglgfnvmggkeqnspiyisriipggvadrhgglkrgdqllsvngvsv 148 (207)
T KOG3550|consen 91 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 148 (207)
T ss_pred CceeecCccccccceeeccCcccCCceEEEeecCCccccccCcccccceeEeecceee
Confidence 44 4453334455554332 346999999999999999988999999999999875
No 37
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.13 E-value=5.2e-06 Score=53.92 Aligned_cols=33 Identities=21% Similarity=0.438 Sum_probs=30.6
Q ss_pred CCeEEEEECCCChhhhcCCCCCCCEEEEECCEeC
Q psy12206 131 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTR 164 (164)
Q Consensus 131 ~gv~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v 164 (164)
..+.|..|.++++|+++| |++||+|++|||+++
T Consensus 12 ~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i 44 (79)
T cd00989 12 IEPVIGEVVPGSPAAKAG-LKAGDRILAINGQKI 44 (79)
T ss_pred cCcEEEeECCCCHHHHcC-CCCCCEEEEECCEEC
Confidence 468899999999999999 999999999999875
No 38
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.09 E-value=8e-06 Score=54.19 Aligned_cols=36 Identities=28% Similarity=0.505 Sum_probs=33.8
Q ss_pred CCcEEEEEeCCCChhhhcCCCCCCCEEEEECCeeccC
Q psy12206 70 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTSED 106 (164)
Q Consensus 70 ~~gv~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~v~~ 106 (164)
..+++|..|.+++||+++| |++||.|++|||.++.+
T Consensus 23 ~~g~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~i~~ 58 (90)
T cd00987 23 TKGVLVASVDPGSPAAKAG-LKPGDVILAVNGKPVKS 58 (90)
T ss_pred CCEEEEEEECCCCHHHHcC-CCcCCEEEEECCEECCC
Confidence 3589999999999999999 99999999999999987
No 39
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.07 E-value=7.6e-06 Score=54.32 Aligned_cols=34 Identities=29% Similarity=0.508 Sum_probs=31.5
Q ss_pred CCCeEEEEECCCChhhhcCCCCCCCEEEEECCEeC
Q psy12206 130 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTR 164 (164)
Q Consensus 130 ~~gv~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v 164 (164)
..|++|..|.+++||+++| |++||+|++|||+++
T Consensus 23 ~~g~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~i 56 (90)
T cd00987 23 TKGVLVASVDPGSPAAKAG-LKPGDVILAVNGKPV 56 (90)
T ss_pred CCEEEEEEECCCCHHHHcC-CCcCCEEEEECCEEC
Confidence 3589999999999999999 999999999999875
No 40
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.98 E-value=1.4e-05 Score=52.28 Aligned_cols=32 Identities=38% Similarity=0.631 Sum_probs=29.4
Q ss_pred CCeEEEEECCCChhhhcCCCCCCCEEEEECCEeC
Q psy12206 131 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTR 164 (164)
Q Consensus 131 ~gv~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v 164 (164)
.|+.|..|.++|||+. | |++||+|++|||.++
T Consensus 8 ~Gv~V~~V~~~s~A~~-g-L~~GD~I~~Ing~~v 39 (79)
T cd00986 8 HGVYVTSVVEGMPAAG-K-LKAGDHIIAVDGKPF 39 (79)
T ss_pred cCEEEEEECCCCchhh-C-CCCCCEEEEECCEEC
Confidence 4899999999999986 8 999999999999875
No 41
>KOG3606|consensus
Probab=97.91 E-value=1.1e-05 Score=64.41 Aligned_cols=64 Identities=28% Similarity=0.484 Sum_probs=52.2
Q ss_pred EEEEEEcCC--CCcCEEEecCCCCCC----CCCCCcEEEEEeCCCChhhhcCCCCCCCEEEEECCeeccC
Q psy12206 43 LDIELVKGN--KGLGFSIAGGIGNQH----IPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTSED 106 (164)
Q Consensus 43 ~~v~L~k~~--~glGf~i~gg~~~~~----~~~~~gv~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~v~~ 106 (164)
+.|+|.|-+ ++|||-|..|..-.. ...-+|+||++..||+.|+..|.|-.+|++++|||+.|.+
T Consensus 160 RRVRL~khG~ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaG 229 (358)
T KOG3606|consen 160 RRVRLHKHGSEKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAG 229 (358)
T ss_pred hheehhhcCCCCCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEEcCEEecc
Confidence 447787754 679999997653211 1234789999999999999999999999999999999988
No 42
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.90 E-value=2.4e-05 Score=51.10 Aligned_cols=34 Identities=35% Similarity=0.636 Sum_probs=31.5
Q ss_pred CcEEEEEeCCCChhhhcCCCCCCCEEEEECCeeccC
Q psy12206 71 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTSED 106 (164)
Q Consensus 71 ~gv~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~v~~ 106 (164)
.|++|..|.++|||+. | |++||.|++|||.++.+
T Consensus 8 ~Gv~V~~V~~~s~A~~-g-L~~GD~I~~Ing~~v~~ 41 (79)
T cd00986 8 HGVYVTSVVEGMPAAG-K-LKAGDHIIAVDGKPFKE 41 (79)
T ss_pred cCEEEEEECCCCchhh-C-CCCCCEEEEECCEECCC
Confidence 5789999999999986 8 99999999999999986
No 43
>KOG3552|consensus
Probab=97.88 E-value=1.1e-05 Score=73.29 Aligned_cols=57 Identities=28% Similarity=0.528 Sum_probs=45.7
Q ss_pred CCceEEEEEEEcCCCCcCEEEecCCCCCCCCCCCcEEEEEeCCCChhhhcCCCCCCCEEEEECCeeccC
Q psy12206 38 GNMKILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTSED 106 (164)
Q Consensus 38 ~~~~~~~v~L~k~~~glGf~i~gg~~~~~~~~~~gv~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~v~~ 106 (164)
..|+++.|++.|+. .|||.++-| .+++|..|.+|||+ -|+|++||+|++|||+++.+
T Consensus 52 i~~~pr~vq~~r~~-~lGFgfvag---------rPviVr~VT~GGps--~GKL~PGDQIl~vN~Epv~d 108 (1298)
T KOG3552|consen 52 IRWEPRQVQLQRNA-SLGFGFVAG---------RPVIVRFVTEGGPS--IGKLQPGDQILAVNGEPVKD 108 (1298)
T ss_pred ccCcchhhhhhccc-cccceeecC---------CceEEEEecCCCCc--cccccCCCeEEEecCccccc
Confidence 44678889996654 344444443 57899999999999 77999999999999999987
No 44
>KOG3542|consensus
Probab=97.86 E-value=1.3e-05 Score=71.02 Aligned_cols=64 Identities=28% Similarity=0.500 Sum_probs=56.1
Q ss_pred CCCceEEEEEEEcCC--CCcCEEEecCCCCCCCCCCCcEEEEEeCCCChhhhcCCCCCCCEEEEECCeeccC
Q psy12206 37 QGNMKILDIELVKGN--KGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTSED 106 (164)
Q Consensus 37 ~~~~~~~~v~L~k~~--~glGf~i~gg~~~~~~~~~~gv~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~v~~ 106 (164)
....+.+.+.|+|.. ..+-|.+.||.+.. -++||..|.||+-|++.| |+.||+|++|||.+.++
T Consensus 531 aaKAK~RqviLtk~sre~pl~f~L~GGsEkG-----fgifV~~V~pgskAa~~G-lKRgDqilEVNgQnfen 596 (1283)
T KOG3542|consen 531 AAKAKPRQVILTKASREDPLMFRLVGGSEKG-----FGIFVAEVFPGSKAAREG-LKRGDQILEVNGQNFEN 596 (1283)
T ss_pred hhcccceeEEEecccccCCceeEeccCcccc-----ceeEEeeecCCchHHHhh-hhhhhhhhhccccchhh
Confidence 345578889999854 57999999998743 589999999999999999 99999999999999988
No 45
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=97.83 E-value=0.00013 Score=62.34 Aligned_cols=83 Identities=25% Similarity=0.322 Sum_probs=54.9
Q ss_pred hhccCceeeEEEeecccCCCCCceEEEEEEEcCC--------CCcCEEEecCCCC---CCC-C-CCCcEEEEEeCCCChh
Q psy12206 18 ALNVGISKFMYVRRKKVTRQGNMKILDIELVKGN--------KGLGFSIAGGIGN---QHI-P-GDNGIYVTKIMDGGAA 84 (164)
Q Consensus 18 ~~~~~~~~~~~v~~~~~~~~~~~~~~~v~L~k~~--------~glGf~i~gg~~~---~~~-~-~~~gv~V~~V~~gs~A 84 (164)
....+..+.+.++|... .....+.+...+ .-+|+.+..-... .+. + ...+++|..|.++|+|
T Consensus 301 ~~~~g~~v~l~v~R~g~-----~~~~~v~l~~~~~~~~~~~~~~lGi~~~~l~~~~~~~~~l~~~~~Gv~V~~V~~~SpA 375 (428)
T TIGR02037 301 TLKPGKKVTLGILRKGK-----EKTITVTLGASPEEQASSSNPFLGLTVANLSPEIRKELRLKGDVKGVVVTKVVSGSPA 375 (428)
T ss_pred hcCCCCEEEEEEEECCE-----EEEEEEEECcCCCccccccccccceEEecCCHHHHHHcCCCcCcCceEEEEeCCCCHH
Confidence 34567888888887431 122333332221 2367776531100 000 1 1268999999999999
Q ss_pred hhcCCCCCCCEEEEECCeeccC
Q psy12206 85 QVDGRLQVGDKLIAVRNSTSED 106 (164)
Q Consensus 85 ~~~G~L~~GD~Il~VNG~~v~~ 106 (164)
+++| |++||.|++|||.++.+
T Consensus 376 ~~aG-L~~GDvI~~Ing~~V~s 396 (428)
T TIGR02037 376 ARAG-LQPGDVILSVNQQPVSS 396 (428)
T ss_pred HHcC-CCCCCEEEEECCEEcCC
Confidence 9999 99999999999999988
No 46
>KOG4407|consensus
Probab=97.83 E-value=1.9e-05 Score=73.90 Aligned_cols=113 Identities=15% Similarity=0.265 Sum_probs=78.1
Q ss_pred CCceEEEEEEEcCC-CCcCEEEec--------------------CCCCCCCCCCCcEEEEEeCCCChhhhcCCCCCCCEE
Q psy12206 38 GNMKILDIELVKGN-KGLGFSIAG--------------------GIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKL 96 (164)
Q Consensus 38 ~~~~~~~v~L~k~~-~glGf~i~g--------------------g~~~~~~~~~~gv~V~~V~~gs~A~~~G~L~~GD~I 96 (164)
..|.+..+.+.|.+ .||||++.- |.-.-.....-.+++.++..++++..+| +..+|.|
T Consensus 42 ~S~~~~~~V~~rR~nQGFGFTLRHFIaYPPEd~~a~Ss~sG~~~Gsa~~~~~~~~s~~~~Q~~s~~~~~nsG-~~s~~~v 120 (1973)
T KOG4407|consen 42 SSIQPKLIVIRRRPNQGFGFTLRHFIAYPPEDDQASSSASGLVSGSATAATAASVSTNWPQEASSAAGSNSG-SSSSVGV 120 (1973)
T ss_pred ccCCCceEEEEecCCCCcceeeeeeeecCchhhhhhhhhccccccchhcccccccccccchhcccCcccccC-cccccce
Confidence 34454455555555 899999872 1111111112336788888889999999 9999999
Q ss_pred EEECCeeccCCcCCCceeEeeeccCCCCcccCCCCCeEEEEECCCChhhhcCCCCCCCEEEEECCEeC
Q psy12206 97 IAVRNSTSEDKRASPGIFLCNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTR 164 (164)
Q Consensus 97 l~VNG~~v~~~~a~~~v~l~~~~~~~~~~~~~~~~gv~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v 164 (164)
..|||..+.+....| ......-.-+||..|++.+||..+- ||.||+++.||.+++
T Consensus 121 ~~itG~e~~~~TS~~------------~~~vk~~eT~~~~eV~~n~~~~~a~-LQ~~~~V~~v~~q~~ 175 (1973)
T KOG4407|consen 121 AGITGLEPTSPTSLP------------PYQVKAMETIFIKEVQANGPAHYAN-LQTGDRVLMVNNQPI 175 (1973)
T ss_pred eeecccccCCCcccc------------HHHHhhhhhhhhhhhccCChhHHHh-hhccceeEEeecCcc
Confidence 999998886621110 0111122377899999999999998 999999999998753
No 47
>KOG0609|consensus
Probab=97.79 E-value=4.3e-05 Score=66.03 Aligned_cols=113 Identities=26% Similarity=0.389 Sum_probs=79.5
Q ss_pred eEEEEEEEcC-CCCcCEEEecCCCCCCCCCCCcEEEEEeCCCChhhhcCCCCCCCEEEEECCeeccCCcCC---------
Q psy12206 41 KILDIELVKG-NKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTSEDKRAS--------- 110 (164)
Q Consensus 41 ~~~~v~L~k~-~~glGf~i~gg~~~~~~~~~~gv~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~v~~~~a~--------- 110 (164)
..+.+.+.|. ...+|.++.-..+ ..++|.+|..||.|++.|.|+.||.|++|||+++.+....
T Consensus 122 ~vriv~i~k~~~eplG~Tik~~e~-------~~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~ 194 (542)
T KOG0609|consen 122 AVRIVRIVKNTGEPLGATIRVEED-------TKVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNS 194 (542)
T ss_pred eeEEEEEeecCCCccceEEEeccC-------CccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhC
Confidence 4666888887 4789999987542 3689999999999999999999999999999999883211
Q ss_pred CceeEeeeccCCCCcccCCCCCeEEEEECCCChhh-------hcC-CCCCCCEEEEECCE
Q psy12206 111 PGIFLCNIAGGIGNQHIPGDNGIYVTKIMDGGAAQ-------VDG-RLQVGDKLIAVRNS 162 (164)
Q Consensus 111 ~~v~l~~~~~~~~~~~~~~~~gv~I~~v~~gs~A~-------~~G-~L~~GD~Il~VNg~ 162 (164)
..-..|.+..... ..+...-+||...+...|+. .+| .++.||+|--+|..
T Consensus 195 ~G~itfkiiP~~~--~~~~~~~~~vra~FdYdP~~D~~IPCkEagl~F~~GDILqIv~qd 252 (542)
T KOG0609|consen 195 RGSITFKIIPSYR--PPPQQQVVFVRALFDYDPKEDDLIPCKEAGLPFQRGDILQIVSQD 252 (542)
T ss_pred CCcEEEEEccccc--CCCceeeeeehhhcCcCcccCCcccchhcCCcccccceeeeccCC
Confidence 1111244444433 11122247888777776654 333 36899999888754
No 48
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=97.79 E-value=3.9e-05 Score=63.50 Aligned_cols=46 Identities=24% Similarity=0.541 Sum_probs=39.8
Q ss_pred CCcCEEEecCCCCCCCCCCCcEEEEEeCCCChhhhcCCCCCCCEEEEECCeeccC
Q psy12206 52 KGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTSED 106 (164)
Q Consensus 52 ~glGf~i~gg~~~~~~~~~~gv~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~v~~ 106 (164)
.++|+.+.-. ..+++|..|.++|||+++| |++||+|++|||.++.+
T Consensus 51 ~~lG~~~~~~--------~~~~~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~ 96 (334)
T TIGR00225 51 EGIGIQVGMD--------DGEIVIVSPFEGSPAEKAG-IKPGDKIIKINGKSVAG 96 (334)
T ss_pred EEEEEEEEEE--------CCEEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCC
Confidence 4688887642 2468999999999999999 99999999999999976
No 49
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=97.78 E-value=5.5e-05 Score=64.00 Aligned_cols=52 Identities=25% Similarity=0.499 Sum_probs=40.6
Q ss_pred CCcCEEEecCCCCCCCCCCCcEEEEEeCCCChhhhcCCCCCCCEEEEECCeeccC
Q psy12206 52 KGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTSED 106 (164)
Q Consensus 52 ~glGf~i~gg~~~~~~~~~~gv~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~v~~ 106 (164)
.|+|+.+.-..... ....+++|..|.++|||+++| |++||+|++|||.++.+
T Consensus 85 ~GiG~~~~~~~~~~--~~~~g~~V~~V~~~SPA~~aG-l~~GD~Iv~InG~~v~~ 136 (389)
T PLN00049 85 TGVGLEVGYPTGSD--GPPAGLVVVAPAPGGPAARAG-IRPGDVILAIDGTSTEG 136 (389)
T ss_pred eEEEEEEEEccCCC--CccCcEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCC
Confidence 57888875422110 012478999999999999999 99999999999999975
No 50
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=97.64 E-value=3.9e-05 Score=63.51 Aligned_cols=33 Identities=24% Similarity=0.508 Sum_probs=31.0
Q ss_pred CCeEEEEECCCChhhhcCCCCCCCEEEEECCEeC
Q psy12206 131 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTR 164 (164)
Q Consensus 131 ~gv~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v 164 (164)
.+++|..|.++|||+++| |++||+|++|||+++
T Consensus 62 ~~~~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v 94 (334)
T TIGR00225 62 GEIVIVSPFEGSPAEKAG-IKPGDKIIKINGKSV 94 (334)
T ss_pred CEEEEEEeCCCChHHHcC-CCCCCEEEEECCEEC
Confidence 478999999999999999 999999999999875
No 51
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=97.61 E-value=0.00038 Score=59.93 Aligned_cols=35 Identities=23% Similarity=0.353 Sum_probs=32.9
Q ss_pred CcEEEEEeCCCChhhhcCCCCCCCEEEEECCeeccC
Q psy12206 71 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTSED 106 (164)
Q Consensus 71 ~gv~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~v~~ 106 (164)
.+..|..|.++|||+++| |++||+|++|||.++.+
T Consensus 221 ~~~vV~~V~~~SpA~~AG-L~~GDvIl~Ing~~V~s 255 (449)
T PRK10779 221 IEPVLAEVQPNSAASKAG-LQAGDRIVKVDGQPLTQ 255 (449)
T ss_pred cCcEEEeeCCCCHHHHcC-CCCCCEEEEECCEEcCC
Confidence 357899999999999999 99999999999999987
No 52
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=97.54 E-value=0.00012 Score=61.91 Aligned_cols=32 Identities=28% Similarity=0.557 Sum_probs=30.7
Q ss_pred CeEEEEECCCChhhhcCCCCCCCEEEEECCEeC
Q psy12206 132 GIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTR 164 (164)
Q Consensus 132 gv~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v 164 (164)
+++|..|.++|||+++| |++||+|++|||+++
T Consensus 103 g~~V~~V~~~SPA~~aG-l~~GD~Iv~InG~~v 134 (389)
T PLN00049 103 GLVVVAPAPGGPAARAG-IRPGDVILAIDGTST 134 (389)
T ss_pred cEEEEEeCCCChHHHcC-CCCCCEEEEECCEEC
Confidence 78999999999999999 999999999999875
No 53
>PRK10139 serine endoprotease; Provisional
Probab=97.49 E-value=0.00017 Score=62.28 Aligned_cols=34 Identities=15% Similarity=0.458 Sum_probs=31.8
Q ss_pred CCCeEEEEECCCChhhhcCCCCCCCEEEEECCEeC
Q psy12206 130 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTR 164 (164)
Q Consensus 130 ~~gv~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v 164 (164)
..|++|..|.++|||+++| |++||+|++|||++|
T Consensus 289 ~~Gv~V~~V~~~SpA~~AG-L~~GDvIl~InG~~V 322 (455)
T PRK10139 289 QRGAFVSEVLPNSGSAKAG-VKAGDIITSLNGKPL 322 (455)
T ss_pred CCceEEEEECCCChHHHCC-CCCCCEEEEECCEEC
Confidence 3599999999999999999 999999999999875
No 54
>PRK10898 serine endoprotease; Provisional
Probab=97.44 E-value=0.0002 Score=59.90 Aligned_cols=33 Identities=36% Similarity=0.576 Sum_probs=31.5
Q ss_pred CCeEEEEECCCChhhhcCCCCCCCEEEEECCEeC
Q psy12206 131 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTR 164 (164)
Q Consensus 131 ~gv~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v 164 (164)
.|++|..|.++|||+++| |++||+|++|||++|
T Consensus 279 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V 311 (353)
T PRK10898 279 QGIVVNEVSPDGPAAKAG-IQVNDLIISVNNKPA 311 (353)
T ss_pred CeEEEEEECCCChHHHcC-CCCCCEEEEECCEEc
Confidence 599999999999999999 999999999999875
No 55
>PRK10942 serine endoprotease; Provisional
Probab=97.41 E-value=0.00024 Score=61.68 Aligned_cols=34 Identities=18% Similarity=0.491 Sum_probs=31.8
Q ss_pred CCCeEEEEECCCChhhhcCCCCCCCEEEEECCEeC
Q psy12206 130 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTR 164 (164)
Q Consensus 130 ~~gv~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v 164 (164)
..|++|..|.++|||+++| |++||+|++|||++|
T Consensus 310 ~~GvlV~~V~~~SpA~~AG-L~~GDvIl~InG~~V 343 (473)
T PRK10942 310 QRGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPI 343 (473)
T ss_pred CCceEEEEECCCChHHHcC-CCCCCEEEEECCEEC
Confidence 3599999999999999999 999999999999875
No 56
>PRK10898 serine endoprotease; Provisional
Probab=97.40 E-value=0.00028 Score=59.02 Aligned_cols=36 Identities=33% Similarity=0.487 Sum_probs=34.1
Q ss_pred CCcEEEEEeCCCChhhhcCCCCCCCEEEEECCeeccC
Q psy12206 70 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTSED 106 (164)
Q Consensus 70 ~~gv~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~v~~ 106 (164)
..|++|..|.+++||+++| |++||.|++|||.++.+
T Consensus 278 ~~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s 313 (353)
T PRK10898 278 LQGIVVNEVSPDGPAAKAG-IQVNDLIISVNNKPAIS 313 (353)
T ss_pred CCeEEEEEECCCChHHHcC-CCCCCEEEEECCEEcCC
Confidence 3689999999999999999 99999999999999977
No 57
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=97.39 E-value=0.0002 Score=59.78 Aligned_cols=33 Identities=24% Similarity=0.369 Sum_probs=31.3
Q ss_pred CCeEEEEECCCChhhhcCCCCCCCEEEEECCEeC
Q psy12206 131 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTR 164 (164)
Q Consensus 131 ~gv~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v 164 (164)
.|++|..|.+++||+++| |++||+|++|||+++
T Consensus 278 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V 310 (351)
T TIGR02038 278 RGIVITGVDPNGPAARAG-ILVRDVILKYDGKDV 310 (351)
T ss_pred ccceEeecCCCChHHHCC-CCCCCEEEEECCEEc
Confidence 589999999999999999 999999999999875
No 58
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=97.38 E-value=0.00023 Score=60.79 Aligned_cols=35 Identities=14% Similarity=0.247 Sum_probs=33.2
Q ss_pred CcEEEEEeCCCChhhhcCCCCCCCEEEEECCeeccC
Q psy12206 71 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTSED 106 (164)
Q Consensus 71 ~gv~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~v~~ 106 (164)
.++.|..|.++|||+++| |++||+|++|||+++.+
T Consensus 203 ~g~vV~~V~~~SpA~~aG-L~~GD~Iv~Vng~~V~s 237 (420)
T TIGR00054 203 IEPVLSDVTPNSPAEKAG-LKEGDYIQSINGEKLRS 237 (420)
T ss_pred cCcEEEEECCCCHHHHcC-CCCCCEEEEECCEECCC
Confidence 468999999999999999 99999999999999987
No 59
>KOG1892|consensus
Probab=97.38 E-value=0.00013 Score=67.03 Aligned_cols=35 Identities=46% Similarity=0.846 Sum_probs=32.9
Q ss_pred CCCeEEEEECCCChhhhcCCCCCCCEEEEECCEeC
Q psy12206 130 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTR 164 (164)
Q Consensus 130 ~~gv~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v 164 (164)
+.|+||++|.+|++|+.+|||+.||++|+|||.++
T Consensus 959 klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SL 993 (1629)
T KOG1892|consen 959 KLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSL 993 (1629)
T ss_pred ccceEEEEeccCCccccccccccCceeeeecCccc
Confidence 46999999999999999999999999999999864
No 60
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=97.37 E-value=0.00023 Score=57.11 Aligned_cols=33 Identities=24% Similarity=0.204 Sum_probs=31.4
Q ss_pred CCeEEEEECCCChhhhcCCCCCCCEEEEECCEeC
Q psy12206 131 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTR 164 (164)
Q Consensus 131 ~gv~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v 164 (164)
.|+.|..+.++++|+++| |++||+|++|||+++
T Consensus 191 ~G~~v~~v~~~s~a~~aG-Lr~GDvIv~ING~~i 223 (259)
T TIGR01713 191 EGYRLNPGKDPSLFYKSG-LQDGDIAVALNGLDL 223 (259)
T ss_pred eEEEEEecCCCCHHHHcC-CCCCCEEEEECCEEc
Confidence 599999999999999999 999999999999985
No 61
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=97.35 E-value=0.00028 Score=58.93 Aligned_cols=35 Identities=23% Similarity=0.333 Sum_probs=33.7
Q ss_pred CcEEEEEeCCCChhhhcCCCCCCCEEEEECCeeccC
Q psy12206 71 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTSED 106 (164)
Q Consensus 71 ~gv~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~v~~ 106 (164)
.|++|..|.+++||+++| |++||.|++|||.++.+
T Consensus 278 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s 312 (351)
T TIGR02038 278 RGIVITGVDPNGPAARAG-ILVRDVILKYDGKDVIG 312 (351)
T ss_pred ccceEeecCCCChHHHCC-CCCCCEEEEECCEEcCC
Confidence 589999999999999999 99999999999999987
No 62
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=97.34 E-value=0.00072 Score=49.33 Aligned_cols=63 Identities=19% Similarity=0.229 Sum_probs=40.1
Q ss_pred eEEEEEEEcC-----CCCcCEEEecCCCCCCCCCCCcEEEEEeCCCChhhhcCCCCC-CCEEEEECCeeccC
Q psy12206 41 KILDIELVKG-----NKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQV-GDKLIAVRNSTSED 106 (164)
Q Consensus 41 ~~~~v~L~k~-----~~glGf~i~gg~~~~~~~~~~gv~V~~V~~gs~A~~~G~L~~-GD~Il~VNG~~v~~ 106 (164)
..+++.+.-. .+-||+++.-...+.. ...++-|.+|.|+|||+.+| |++ .|.|+.+++..+.+
T Consensus 10 ~~R~v~i~ps~~w~~~g~LG~sv~~~~~~~~--~~~~~~Vl~V~p~SPA~~AG-L~p~~DyIig~~~~~l~~ 78 (138)
T PF04495_consen 10 TTREVSIVPSKKWGGQGLLGISVRFESFEGA--EEEGWHVLRVAPNSPAAKAG-LEPFFDYIIGIDGGLLDD 78 (138)
T ss_dssp SEEEEEE---SSSSSSSSS-EEEEEEE-TTG--CCCEEEEEEE-TTSHHHHTT---TTTEEEEEETTCE--S
T ss_pred eEEEEEEccCcccCCCCCCcEEEEEeccccc--ccceEEEeEecCCCHHHHCC-ccccccEEEEccceecCC
Confidence 3455555432 2449999886544321 35678999999999999999 998 69999999988776
No 63
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=97.34 E-value=0.00042 Score=55.63 Aligned_cols=35 Identities=26% Similarity=0.242 Sum_probs=33.8
Q ss_pred CcEEEEEeCCCChhhhcCCCCCCCEEEEECCeeccC
Q psy12206 71 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTSED 106 (164)
Q Consensus 71 ~gv~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~v~~ 106 (164)
.|..|..+.++++|+++| |++||.|++|||.++.+
T Consensus 191 ~G~~v~~v~~~s~a~~aG-Lr~GDvIv~ING~~i~~ 225 (259)
T TIGR01713 191 EGYRLNPGKDPSLFYKSG-LQDGDIAVALNGLDLRD 225 (259)
T ss_pred eEEEEEecCCCCHHHHcC-CCCCCEEEEECCEEcCC
Confidence 689999999999999999 99999999999999988
No 64
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=97.30 E-value=0.00043 Score=59.01 Aligned_cols=54 Identities=20% Similarity=0.327 Sum_probs=44.1
Q ss_pred EEEEcCCCCcCEEEecCCCCCCCCCCCcEEEEEeCCCChhhhcCCCCCCCEEEEECCeeccC
Q psy12206 45 IELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTSED 106 (164)
Q Consensus 45 v~L~k~~~glGf~i~gg~~~~~~~~~~gv~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~v~~ 106 (164)
..+...-.|+|..+.-... .++.|.++.+++||+++| |++||.|+.|||.++.+
T Consensus 93 ~~~~~~~~GiG~~i~~~~~-------~~~~V~s~~~~~PA~kag-i~~GD~I~~IdG~~~~~ 146 (406)
T COG0793 93 TDTSGEFGGIGIELQMEDI-------GGVKVVSPIDGSPAAKAG-IKPGDVIIKIDGKSVGG 146 (406)
T ss_pred hhccccccceeEEEEEecC-------CCcEEEecCCCChHHHcC-CCCCCEEEEECCEEccC
Confidence 3343334788888876431 568999999999999999 99999999999999988
No 65
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=97.30 E-value=0.00016 Score=61.65 Aligned_cols=31 Identities=23% Similarity=0.542 Sum_probs=29.3
Q ss_pred EEEeCCCChhhhcCCCCCCCEEEEECCeeccC
Q psy12206 75 VTKIMDGGAAQVDGRLQVGDKLIAVRNSTSED 106 (164)
Q Consensus 75 V~~V~~gs~A~~~G~L~~GD~Il~VNG~~v~~ 106 (164)
|..|.|+|+|+++| |++||+|++|||..+.+
T Consensus 2 I~~V~pgSpAe~AG-Le~GD~IlsING~~V~D 32 (433)
T TIGR03279 2 ISAVLPGSIAEELG-FEPGDALVSINGVAPRD 32 (433)
T ss_pred cCCcCCCCHHHHcC-CCCCCEEEEECCEECCC
Confidence 56799999999999 99999999999999987
No 66
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=97.20 E-value=0.00036 Score=59.45 Aligned_cols=33 Identities=27% Similarity=0.521 Sum_probs=31.5
Q ss_pred CCeEEEEECCCChhhhcCCCCCCCEEEEECCEeC
Q psy12206 131 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTR 164 (164)
Q Consensus 131 ~gv~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v 164 (164)
.++.|.+..+++||+++| |++||+|++|||.++
T Consensus 112 ~~~~V~s~~~~~PA~kag-i~~GD~I~~IdG~~~ 144 (406)
T COG0793 112 GGVKVVSPIDGSPAAKAG-IKPGDVIIKIDGKSV 144 (406)
T ss_pred CCcEEEecCCCChHHHcC-CCCCCEEEEECCEEc
Confidence 789999999999999999 999999999999875
No 67
>KOG3571|consensus
Probab=97.03 E-value=0.0006 Score=58.81 Aligned_cols=38 Identities=45% Similarity=0.814 Sum_probs=34.4
Q ss_pred cCCCCCeEEEEECCCChhhhcCCCCCCCEEEEECCEeC
Q psy12206 127 IPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTR 164 (164)
Q Consensus 127 ~~~~~gv~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v 164 (164)
..++.|+||.+|++|++.+.+||+.+||.||.||.+++
T Consensus 273 ~rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsF 310 (626)
T KOG3571|consen 273 ARGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSF 310 (626)
T ss_pred cCCCCceEEeeeccCceeeccCccCccceEEEeeecch
Confidence 34678999999999999999999999999999998763
No 68
>KOG3651|consensus
Probab=96.98 E-value=0.00078 Score=54.91 Aligned_cols=34 Identities=29% Similarity=0.620 Sum_probs=32.1
Q ss_pred CCeEEEEECCCChhhhcCCCCCCCEEEEECCEeC
Q psy12206 131 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTR 164 (164)
Q Consensus 131 ~gv~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v 164 (164)
.-+||..|+.++||++.|+++.||.|++|||.+|
T Consensus 30 PClYiVQvFD~tPAa~dG~i~~GDEi~avNg~sv 63 (429)
T KOG3651|consen 30 PCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISV 63 (429)
T ss_pred CeEEEEEeccCCchhccCccccCCeeEEecceee
Confidence 4789999999999999999999999999999875
No 69
>KOG3605|consensus
Probab=96.97 E-value=0.0012 Score=58.56 Aligned_cols=65 Identities=18% Similarity=0.403 Sum_probs=50.3
Q ss_pred CceeeEEEeecccCCCCCceEEEEEEEcCC--CCcCEEEecCCCCCCCCCCCcEEEEEeCCCChhhhcCCCCCCCEEEEE
Q psy12206 22 GISKFMYVRRKKVTRQGNMKILDIELVKGN--KGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99 (164)
Q Consensus 22 ~~~~~~~v~~~~~~~~~~~~~~~v~L~k~~--~glGf~i~gg~~~~~~~~~~gv~V~~V~~gs~A~~~G~L~~GD~Il~V 99 (164)
.+.|+|.|-+-.| ..+|.|.|.. -.|||++..| +|-+...||.|++.| +++|-+|++|
T Consensus 724 QT~VkltiV~cpP-------V~~V~I~RPd~kyQLGFSVQNG------------iICSLlRGGIAERGG-VRVGHRIIEI 783 (829)
T KOG3605|consen 724 QTAVKLNIVSCPP-------VTTVLIRRPDLRYQLGFSVQNG------------IICSLLRGGIAERGG-VRVGHRIIEI 783 (829)
T ss_pred cceEEEEEecCCC-------ceEEEeecccchhhccceeeCc------------EeehhhcccchhccC-ceeeeeEEEE
Confidence 4567777765554 3347775544 3599999865 566789999999999 9999999999
Q ss_pred CCeeccC
Q psy12206 100 RNSTSED 106 (164)
Q Consensus 100 NG~~v~~ 106 (164)
||.+|.-
T Consensus 784 NgQSVVA 790 (829)
T KOG3605|consen 784 NGQSVVA 790 (829)
T ss_pred CCceEEe
Confidence 9999865
No 70
>PRK11186 carboxy-terminal protease; Provisional
Probab=96.94 E-value=0.0012 Score=59.46 Aligned_cols=41 Identities=29% Similarity=0.562 Sum_probs=33.8
Q ss_pred CCcCEEEecCCCCCCCCCCCcEEEEEeCCCChhhhcCCCCCCCEEEEEC
Q psy12206 52 KGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVR 100 (164)
Q Consensus 52 ~glGf~i~gg~~~~~~~~~~gv~V~~V~~gs~A~~~G~L~~GD~Il~VN 100 (164)
.|+|+.+.-. +..++|..|.|||||++++.|++||+|++||
T Consensus 244 ~GIGa~l~~~--------~~~~~V~~vipGsPA~ka~gLk~GD~IlaVn 284 (667)
T PRK11186 244 EGIGAVLQMD--------DDYTVINSLVAGGPAAKSKKLSVGDKIVGVG 284 (667)
T ss_pred eEEEEEEEEe--------CCeEEEEEccCCChHHHhCCCCCCCEEEEEC
Confidence 5788887642 2358999999999999983399999999999
No 71
>KOG3542|consensus
Probab=96.92 E-value=0.00049 Score=61.44 Aligned_cols=33 Identities=30% Similarity=0.621 Sum_probs=31.0
Q ss_pred CCeEEEEECCCChhhhcCCCCCCCEEEEECCEeC
Q psy12206 131 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTR 164 (164)
Q Consensus 131 ~gv~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v 164 (164)
.|+||..|.||+.|+++| |+.||+|++|||++.
T Consensus 562 fgifV~~V~pgskAa~~G-lKRgDqilEVNgQnf 594 (1283)
T KOG3542|consen 562 FGIFVAEVFPGSKAAREG-LKRGDQILEVNGQNF 594 (1283)
T ss_pred ceeEEeeecCCchHHHhh-hhhhhhhhhccccch
Confidence 399999999999999999 999999999999863
No 72
>PRK11186 carboxy-terminal protease; Provisional
Probab=96.87 E-value=0.00072 Score=60.86 Aligned_cols=31 Identities=32% Similarity=0.581 Sum_probs=27.9
Q ss_pred CCCeEEEEECCCChhhhc-CCCCCCCEEEEECC
Q psy12206 130 DNGIYVTKIMDGGAAQVD-GRLQVGDKLIAVRN 161 (164)
Q Consensus 130 ~~gv~I~~v~~gs~A~~~-G~L~~GD~Il~VNg 161 (164)
..+++|.+|.|||||+++ | |++||+|++||+
T Consensus 254 ~~~~~V~~vipGsPA~ka~g-Lk~GD~IlaVn~ 285 (667)
T PRK11186 254 DDYTVINSLVAGGPAAKSKK-LSVGDKIVGVGQ 285 (667)
T ss_pred CCeEEEEEccCCChHHHhCC-CCCCCEEEEECC
Confidence 346889999999999998 7 999999999993
No 73
>KOG3552|consensus
Probab=96.82 E-value=0.0011 Score=60.72 Aligned_cols=41 Identities=29% Similarity=0.585 Sum_probs=33.9
Q ss_pred CCCCcccCCCCCeEEEEECCCChhhhcCCCCCCCEEEEECCEeC
Q psy12206 121 GIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTR 164 (164)
Q Consensus 121 ~~~~~~~~~~~gv~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v 164 (164)
.+||.+..+ .+++|..|.+|||+. |.|++||+|++|||.+|
T Consensus 66 ~lGFgfvag-rPviVr~VT~GGps~--GKL~PGDQIl~vN~Epv 106 (1298)
T KOG3552|consen 66 SLGFGFVAG-RPVIVRFVTEGGPSI--GKLQPGDQILAVNGEPV 106 (1298)
T ss_pred cccceeecC-CceEEEEecCCCCcc--ccccCCCeEEEecCccc
Confidence 344444444 699999999999997 78999999999999886
No 74
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=96.64 E-value=0.007 Score=52.69 Aligned_cols=42 Identities=29% Similarity=0.442 Sum_probs=35.8
Q ss_pred CCcCEEEecCCCCCCCCCCCcEEEEEeCCCChhhhcCCCCCCCEEEEECCe
Q psy12206 52 KGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNS 102 (164)
Q Consensus 52 ~glGf~i~gg~~~~~~~~~~gv~V~~V~~gs~A~~~G~L~~GD~Il~VNG~ 102 (164)
..||+.+... .....|+.|.++|||.++| |.+||+|++|||.
T Consensus 451 ~~LGl~v~~~--------~g~~~i~~V~~~gPA~~AG-l~~Gd~ivai~G~ 492 (558)
T COG3975 451 YYLGLKVKSE--------GGHEKITFVFPGGPAYKAG-LSPGDKIVAINGI 492 (558)
T ss_pred cccceEeccc--------CCeeEEEecCCCChhHhcc-CCCccEEEEEcCc
Confidence 3588777642 2457999999999999999 9999999999999
No 75
>KOG3606|consensus
Probab=96.56 E-value=0.002 Score=51.78 Aligned_cols=35 Identities=29% Similarity=0.579 Sum_probs=32.7
Q ss_pred CCCeEEEEECCCChhhhcCCCCCCCEEEEECCEeC
Q psy12206 130 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTR 164 (164)
Q Consensus 130 ~~gv~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v 164 (164)
..|+||+.+.||+.|+-.|-|...|.+++|||+.|
T Consensus 193 vpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEV 227 (358)
T KOG3606|consen 193 VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEV 227 (358)
T ss_pred cCceEEEeecCCccccccceeeecceeEEEcCEEe
Confidence 46999999999999999998899999999999875
No 76
>KOG3551|consensus
Probab=96.48 E-value=0.0031 Score=53.01 Aligned_cols=53 Identities=28% Similarity=0.424 Sum_probs=40.7
Q ss_pred ceeEeee-ccCCCCcc---cCCCCCeEEEEECCCChhhhcCCCCCCCEEEEECCEeC
Q psy12206 112 GIFLCNI-AGGIGNQH---IPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTR 164 (164)
Q Consensus 112 ~v~l~~~-~~~~~~~~---~~~~~gv~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v 164 (164)
+|++.+- .+|+|... ..++.++.|++|++|-+|++.+.|..||-|++|||.++
T Consensus 87 ~V~V~K~d~gGLGISIKGGreNkMPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL 143 (506)
T KOG3551|consen 87 RVRVVKQDAGGLGISIKGGRENKMPILISKIFKGLAADQTGALFLGDAILSVNGEDL 143 (506)
T ss_pred eeEEEEecCCcceEEeecCcccCCceehhHhccccccccccceeeccEEEEecchhh
Confidence 3555332 34555433 23567999999999999999999999999999999864
No 77
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=96.47 E-value=0.0036 Score=54.48 Aligned_cols=34 Identities=29% Similarity=0.454 Sum_probs=30.3
Q ss_pred CCCCCeEEEEECCCChhhhcCCCCCCCEEEEECCE
Q psy12206 128 PGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNS 162 (164)
Q Consensus 128 ~~~~gv~I~~v~~gs~A~~~G~L~~GD~Il~VNg~ 162 (164)
....+..|..|.++|||.+|| |.+||+|++|||.
T Consensus 459 ~~~g~~~i~~V~~~gPA~~AG-l~~Gd~ivai~G~ 492 (558)
T COG3975 459 SEGGHEKITFVFPGGPAYKAG-LSPGDKIVAINGI 492 (558)
T ss_pred ccCCeeEEEecCCCChhHhcc-CCCccEEEEEcCc
Confidence 344567899999999999999 9999999999996
No 78
>KOG3129|consensus
Probab=96.44 E-value=0.0031 Score=48.83 Aligned_cols=30 Identities=30% Similarity=0.446 Sum_probs=26.9
Q ss_pred CeEEEEECCCChhhhcCCCCCCCEEEEECCE
Q psy12206 132 GIYVTKIMDGGAAQVDGRLQVGDKLIAVRNS 162 (164)
Q Consensus 132 gv~I~~v~~gs~A~~~G~L~~GD~Il~VNg~ 162 (164)
-.+|.+|.|+|||+++| |+.||.|+++.+.
T Consensus 140 Fa~V~sV~~~SPA~~aG-l~~gD~il~fGnV 169 (231)
T KOG3129|consen 140 FAVVDSVVPGSPADEAG-LCVGDEILKFGNV 169 (231)
T ss_pred eEEEeecCCCChhhhhC-cccCceEEEeccc
Confidence 45789999999999999 9999999998654
No 79
>KOG1421|consensus
Probab=96.36 E-value=0.007 Score=54.26 Aligned_cols=91 Identities=22% Similarity=0.317 Sum_probs=60.3
Q ss_pred CCCcE-EEEEeCCCChhhhcCCCCCCCEEEEECCeeccC---------CcCCCceeE-----------------------
Q psy12206 69 GDNGI-YVTKIMDGGAAQVDGRLQVGDKLIAVRNSTSED---------KRASPGIFL----------------------- 115 (164)
Q Consensus 69 ~~~gv-~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~v~~---------~~a~~~v~l----------------------- 115 (164)
...++ .|..|.++|+|++ .|++||.+++||+..+.+ +.....+.|
T Consensus 300 ~~tgmLvV~~vL~~gpa~k--~Le~GDillavN~t~l~df~~l~~iLDegvgk~l~LtI~Rggqelel~vtvqdlh~itp 377 (955)
T KOG1421|consen 300 ERTGMLVVETVLPEGPAEK--KLEPGDILLAVNSTCLNDFEALEQILDEGVGKNLELTIQRGGQELELTVTVQDLHGITP 377 (955)
T ss_pred ccceeEEEEEeccCCchhh--ccCCCcEEEEEcceehHHHHHHHHHHhhccCceEEEEEEeCCEEEEEEEEeccccCCCC
Confidence 34554 8899999999988 599999999999998877 111222221
Q ss_pred ---eeeccCCCC--------cccCCCCCeEEEEECCCChhhhcCCCCCCCEEEEECCEeC
Q psy12206 116 ---CNIAGGIGN--------QHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTR 164 (164)
Q Consensus 116 ---~~~~~~~~~--------~~~~~~~gv~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v 164 (164)
....|..=. ...-+..|+||++-. |+++...+ +. +-.|.+||++++
T Consensus 378 ~R~levcGav~hdlsyq~ar~y~lP~~GvyVa~~~-gsf~~~~~-~y-~~ii~~vanK~t 434 (955)
T KOG1421|consen 378 DRFLEVCGAVFHDLSYQLARLYALPVEGVYVASPG-GSFRHRGP-RY-GQIIDSVANKPT 434 (955)
T ss_pred ceEEEEcceEecCCCHHHHhhcccccCcEEEccCC-CCccccCC-cc-eEEEEeecCCcC
Confidence 111110000 011133499998876 88888877 55 888999998763
No 80
>KOG3938|consensus
Probab=96.31 E-value=0.003 Score=50.62 Aligned_cols=60 Identities=22% Similarity=0.405 Sum_probs=52.4
Q ss_pred ceEEEEEEEcCCCCcCEEEecCCCCCCCCCCCcEEEEEeCCCChhhhcCCCCCCCEEEEECCeeccC
Q psy12206 40 MKILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTSED 106 (164)
Q Consensus 40 ~~~~~v~L~k~~~glGf~i~gg~~~~~~~~~~gv~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~v~~ 106 (164)
...+++++.|..+.||++|... +-.-.||..|.++|.-++--.+++||.|-+|||.++.+
T Consensus 125 Gq~kEv~v~KsedalGlTITDN-------G~GyAFIKrIkegsvidri~~i~VGd~IEaiNge~ivG 184 (334)
T KOG3938|consen 125 GQAKEVEVVKSEDALGLTITDN-------GAGYAFIKRIKEGSVIDRIEAICVGDHIEAINGESIVG 184 (334)
T ss_pred CcceeEEEEecccccceEEeeC-------CcceeeeEeecCCchhhhhhheeHHhHHHhhcCccccc
Confidence 4678899999999999999863 22346999999999999988899999999999999998
No 81
>KOG1320|consensus
Probab=96.25 E-value=0.018 Score=49.91 Aligned_cols=91 Identities=21% Similarity=0.255 Sum_probs=62.7
Q ss_pred CcEEEEEeCCCChhhhcCCCCCCCEEEEECCeeccC----Cc-----CC-----C---------c-----eeE-------
Q psy12206 71 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTSED----KR-----AS-----P---------G-----IFL------- 115 (164)
Q Consensus 71 ~gv~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~v~~----~~-----a~-----~---------~-----v~l------- 115 (164)
.|+.+..+.+-++|... ++.||.|+.++|+.+.- .+ +. | + +.+
T Consensus 287 ~g~~i~~~~qtd~ai~~--~nsg~~ll~~DG~~IgVn~~~~~ri~~~~~iSf~~p~d~vl~~v~r~~e~~~~lr~~~~~~ 364 (473)
T KOG1320|consen 287 TGVLISKINQTDAAINP--GNSGGPLLNLDGEVIGVNTRKVTRIGFSHGISFKIPIDTVLVIVLRLGEFQISLRPVKPLV 364 (473)
T ss_pred cceeeeeecccchhhhc--ccCCCcEEEecCcEeeeeeeeeEEeeccccceeccCchHhhhhhhhhhhhceeeccccCcc
Confidence 66899999999988775 58999999999988843 11 11 0 0 000
Q ss_pred ----------eeeccCCCCccc--------CCCCCeEEEEECCCChhhhcCCCCCCCEEEEECCEeC
Q psy12206 116 ----------CNIAGGIGNQHI--------PGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTR 164 (164)
Q Consensus 116 ----------~~~~~~~~~~~~--------~~~~gv~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v 164 (164)
.-+.+++=+... ....++++..|.|++++...+ +++||+|.+|||++|
T Consensus 365 p~~~~~g~~s~~i~~g~vf~~~~~~~~~~~~~~q~v~is~Vlp~~~~~~~~-~~~g~~V~~vng~~V 430 (473)
T KOG1320|consen 365 PVHQYIGLPSYYIFAGLVFVPLTKSYIFPSGVVQLVLVSQVLPGSINGGYG-LKPGDQVVKVNGKPV 430 (473)
T ss_pred cccccCCceeEEEecceEEeecCCCccccccceeEEEEEEeccCCCccccc-ccCCCEEEEECCEEe
Confidence 111111111110 012368899999999999998 999999999999875
No 82
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.008 Score=49.89 Aligned_cols=36 Identities=25% Similarity=0.431 Sum_probs=34.1
Q ss_pred CCcEEEEEeCCCChhhhcCCCCCCCEEEEECCeeccC
Q psy12206 70 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTSED 106 (164)
Q Consensus 70 ~~gv~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~v~~ 106 (164)
..|++|..|.+++||+++| ++.||.|+++||.++.+
T Consensus 269 ~~G~~V~~v~~~spa~~ag-i~~Gdii~~vng~~v~~ 304 (347)
T COG0265 269 AAGAVVLGVLPGSPAAKAG-IKAGDIITAVNGKPVAS 304 (347)
T ss_pred CCceEEEecCCCChHHHcC-CCCCCEEEEECCEEccC
Confidence 4679999999999999999 99999999999999998
No 83
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.0081 Score=49.85 Aligned_cols=34 Identities=26% Similarity=0.441 Sum_probs=31.5
Q ss_pred CCCeEEEEECCCChhhhcCCCCCCCEEEEECCEeC
Q psy12206 130 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTR 164 (164)
Q Consensus 130 ~~gv~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v 164 (164)
..|++|..+.+++||+++| ++.||.|+++||.++
T Consensus 269 ~~G~~V~~v~~~spa~~ag-i~~Gdii~~vng~~v 302 (347)
T COG0265 269 AAGAVVLGVLPGSPAAKAG-IKAGDIITAVNGKPV 302 (347)
T ss_pred CCceEEEecCCCChHHHcC-CCCCCEEEEECCEEc
Confidence 4589999999999999999 999999999999875
No 84
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=96.12 E-value=0.012 Score=50.07 Aligned_cols=35 Identities=17% Similarity=0.458 Sum_probs=29.5
Q ss_pred CcEEEEEeC--------CCChhhhcCCCCCCCEEEEECCeeccC
Q psy12206 71 NGIYVTKIM--------DGGAAQVDGRLQVGDKLIAVRNSTSED 106 (164)
Q Consensus 71 ~gv~V~~V~--------~gs~A~~~G~L~~GD~Il~VNG~~v~~ 106 (164)
.|++|.... .++||+.+| |++||.|++|||.++.+
T Consensus 105 ~GVlVvg~~~v~~~~g~~~SPAa~AG-Lq~GDiIvsING~~V~s 147 (402)
T TIGR02860 105 KGVLVVGFSDIETEKGKIHSPGEEAG-IQIGDRILKINGEKIKN 147 (402)
T ss_pred CEEEEEEEEcccccCCCCCCHHHHcC-CCCCCEEEEECCEECCC
Confidence 577775542 258999999 99999999999999987
No 85
>KOG3129|consensus
Probab=96.05 E-value=0.0067 Score=47.02 Aligned_cols=35 Identities=29% Similarity=0.405 Sum_probs=29.7
Q ss_pred CcEEEEEeCCCChhhhcCCCCCCCEEEEECCeeccC
Q psy12206 71 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTSED 106 (164)
Q Consensus 71 ~gv~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~v~~ 106 (164)
.-++|..|.|+|||+.+| |+.||.|+++..+.--+
T Consensus 139 ~Fa~V~sV~~~SPA~~aG-l~~gD~il~fGnV~sgn 173 (231)
T KOG3129|consen 139 PFAVVDSVVPGSPADEAG-LCVGDEILKFGNVHSGN 173 (231)
T ss_pred ceEEEeecCCCChhhhhC-cccCceEEEeccccccc
Confidence 347999999999999999 99999999996654443
No 86
>KOG4371|consensus
Probab=95.90 E-value=0.013 Score=54.59 Aligned_cols=115 Identities=24% Similarity=0.437 Sum_probs=77.4
Q ss_pred eEEEEEEEcCCCCcCEEEecCCCCCCCCCCCcEEEEEeCCCChhhhcCCCCCCCEEEEECCeeccC---CcC-------C
Q psy12206 41 KILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTSED---KRA-------S 110 (164)
Q Consensus 41 ~~~~v~L~k~~~glGf~i~gg~~~~~~~~~~gv~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~v~~---~~a-------~ 110 (164)
+.+.+.+.|.+..||.+++.-.+ .+-++.....+.-.+-. |..||.++.+||+.++. +++ .
T Consensus 1147 ~~i~~~~~r~~~~l~~~~a~~~~--------~~~~~~~~~~~~~~~pd-~~~g~~l~~~n~i~~~~~~~~~~~~~~~~~~ 1217 (1332)
T KOG4371|consen 1147 RVIDVELDRNEGSLGVQIASLSG--------RVCIKQLTSEPAISHPD-IRVGDVLLYVNGIAVEGKVHQEVVAMLRGGG 1217 (1332)
T ss_pred ccccccCCCCCCCCCceeccCcc--------ceehhhcccCCCCCCCC-cchhhhhhhccceeeechhhHHHHHHHhccC
Confidence 34456666767779999886432 34455555555444555 99999999999998887 111 1
Q ss_pred CceeE------------------------------eeeccCCCCc--ccCCCCCeEEEEECCCChhhhcCCCCCCCEEEE
Q psy12206 111 PGIFL------------------------------CNIAGGIGNQ--HIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIA 158 (164)
Q Consensus 111 ~~v~l------------------------------~~~~~~~~~~--~~~~~~gv~I~~v~~gs~A~~~G~L~~GD~Il~ 158 (164)
.+|.| .+.-.+.+.. ......|+|+..+...+.|.-.|.+++||++..
T Consensus 1218 ~~~~~~~~r~~~~~~d~~~~s~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~a~~~~~~r~g~~~~~ 1297 (1332)
T KOG4371|consen 1218 DRVVLGVQRPPPAYSDQHHASSTSASAPLISVMLLKKPMATLGLSLAKRTMSDGIFIRNIAQDSAASSEGTLRVGDRLVS 1297 (1332)
T ss_pred ceEEEEeecCCcccccchhhhhhcccchhhhheeeecccccccccccccCcCCceeeecccccccccccccccccceeec
Confidence 22222 1111122222 223567999999999999998899999999999
Q ss_pred ECCEeC
Q psy12206 159 VRNSTR 164 (164)
Q Consensus 159 VNg~~v 164 (164)
.+|+++
T Consensus 1298 ~~~~~~ 1303 (1332)
T KOG4371|consen 1298 LDGEPV 1303 (1332)
T ss_pred cCCccC
Confidence 998875
No 87
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=95.83 E-value=0.012 Score=42.97 Aligned_cols=32 Identities=22% Similarity=0.302 Sum_probs=25.5
Q ss_pred CCeEEEEECCCChhhhcCCCCC-CCEEEEECCEe
Q psy12206 131 NGIYVTKIMDGGAAQVDGRLQV-GDKLIAVRNST 163 (164)
Q Consensus 131 ~gv~I~~v~~gs~A~~~G~L~~-GD~Il~VNg~~ 163 (164)
.+..|.+|.|+|||++|| |++ .|.|+.+++..
T Consensus 43 ~~~~Vl~V~p~SPA~~AG-L~p~~DyIig~~~~~ 75 (138)
T PF04495_consen 43 EGWHVLRVAPNSPAAKAG-LEPFFDYIIGIDGGL 75 (138)
T ss_dssp CEEEEEEE-TTSHHHHTT---TTTEEEEEETTCE
T ss_pred ceEEEeEecCCCHHHHCC-ccccccEEEEcccee
Confidence 477899999999999999 998 59999999753
No 88
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=95.72 E-value=0.085 Score=40.25 Aligned_cols=75 Identities=17% Similarity=0.203 Sum_probs=55.0
Q ss_pred hhhhccCceeeEEEeecccCCCCCceEEEEEEEcCC------CCcCEEEecCCCCCCCCCCCcEEEEEeCCCChhhhcCC
Q psy12206 16 VIALNVGISKFMYVRRKKVTRQGNMKILDIELVKGN------KGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGR 89 (164)
Q Consensus 16 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~v~L~k~~------~glGf~i~gg~~~~~~~~~~gv~V~~V~~gs~A~~~G~ 89 (164)
....+.|..+++.|.+....++...++..+.+..+. ...|+.+... +..+.|..|..||+|+++|
T Consensus 69 ~~~~~~g~~lrl~V~G~~~~G~~~~k~v~lpl~~~~~g~eRL~~~GL~l~~e--------~~~~~Vd~v~fgS~A~~~g- 139 (183)
T PF11874_consen 69 AEQLPPGSSLRLRVEGPDFEGDPVTKTVLLPLGDGADGEERLEAAGLTLMEE--------GGKVIVDEVEFGSPAEKAG- 139 (183)
T ss_pred HhcCCCCCEEEEEEEccCCCCCceEEEEEEEcCCCCCHHHHHHhCCCEEEee--------CCEEEEEecCCCCHHHHcC-
Confidence 345778999999999998855444444444443332 2378887752 3468999999999999999
Q ss_pred CCCCCEEEEE
Q psy12206 90 LQVGDKLIAV 99 (164)
Q Consensus 90 L~~GD~Il~V 99 (164)
+..+++|.+|
T Consensus 140 ~d~d~~I~~v 149 (183)
T PF11874_consen 140 IDFDWEITEV 149 (183)
T ss_pred CCCCcEEEEE
Confidence 9999988886
No 89
>KOG3834|consensus
Probab=95.65 E-value=0.031 Score=47.61 Aligned_cols=88 Identities=18% Similarity=0.225 Sum_probs=57.0
Q ss_pred CcEEEEEeCCCChhhhcCCCCCCCEEEEECCeeccC---------CcCCCceeE------------eeecc--CCC----
Q psy12206 71 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTSED---------KRASPGIFL------------CNIAG--GIG---- 123 (164)
Q Consensus 71 ~gv~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~v~~---------~~a~~~v~l------------~~~~~--~~~---- 123 (164)
.+.-|-.|..+++|+++|-..--|.|.+|||.-+.. +...++|+| ..+.. ..+
T Consensus 15 eg~hvlkVqedSpa~~aglepffdFIvSI~g~rL~~dnd~Lk~llk~~sekVkltv~n~kt~~~R~v~I~ps~~wggqll 94 (462)
T KOG3834|consen 15 EGYHVLKVQEDSPAHKAGLEPFFDFIVSINGIRLNKDNDTLKALLKANSEKVKLTVYNSKTQEVRIVEIVPSNNWGGQLL 94 (462)
T ss_pred eeEEEEEeecCChHHhcCcchhhhhhheeCcccccCchHHHHHHHHhcccceEEEEEecccceeEEEEeccccccccccc
Confidence 556677899999999999444469999999999985 111122333 11111 111
Q ss_pred -C--ccc----CCCCCeEEEEECCCChhhhcCCCC-CCCEEEEE
Q psy12206 124 -N--QHI----PGDNGIYVTKIMDGGAAQVDGRLQ-VGDKLIAV 159 (164)
Q Consensus 124 -~--~~~----~~~~gv~I~~v~~gs~A~~~G~L~-~GD~Il~V 159 (164)
. .+. ....-..|-+|.+++||+++| |+ .+|.|+-+
T Consensus 95 GvsvrFcsf~~A~~~vwHvl~V~p~SPaalAg-l~~~~DYivG~ 137 (462)
T KOG3834|consen 95 GVSVRFCSFDGAVESVWHVLSVEPNSPAALAG-LRPYTDYIVGI 137 (462)
T ss_pred ceEEEeccCccchhheeeeeecCCCCHHHhcc-cccccceEecc
Confidence 0 010 111233478999999999999 88 67999876
No 90
>KOG0606|consensus
Probab=95.60 E-value=0.019 Score=53.97 Aligned_cols=57 Identities=21% Similarity=0.253 Sum_probs=46.6
Q ss_pred EEEEcCCCCcCEEEec------CCCCCCCCCCCcEEEEEeCCCChhhhcCCCCCCCEEEEECCeeccC
Q psy12206 45 IELVKGNKGLGFSIAG------GIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTSED 106 (164)
Q Consensus 45 v~L~k~~~glGf~i~g------g~~~~~~~~~~gv~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~v~~ 106 (164)
|.+.+.+.+|||++.. ..+ + ......|..|.+++||..+| |+++|.|+.|||+++++
T Consensus 630 I~i~~~~~~yGft~~airVy~Gd~d--~--ytvhh~v~sv~egsPA~~ag-ls~~DlIthvnge~v~g 692 (1205)
T KOG0606|consen 630 ITIHFSGKKYGFTLRAIRVYMGDKD--V--YTVHHSVGSVEEGSPAFEAG-LSAGDLITHVNGEPVHG 692 (1205)
T ss_pred eeeeccccccCceeeeEEEecCCcc--c--ceeeeeeeeecCCCCccccC-CCccceeEeccCcccch
Confidence 7788888999988653 222 2 12346888999999999999 99999999999999998
No 91
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=95.45 E-value=0.023 Score=48.37 Aligned_cols=33 Identities=18% Similarity=0.446 Sum_probs=26.4
Q ss_pred CCeEEEEEC--------CCChhhhcCCCCCCCEEEEECCEeC
Q psy12206 131 NGIYVTKIM--------DGGAAQVDGRLQVGDKLIAVRNSTR 164 (164)
Q Consensus 131 ~gv~I~~v~--------~gs~A~~~G~L~~GD~Il~VNg~~v 164 (164)
.|++|.... .++||+++| |++||+|++|||+++
T Consensus 105 ~GVlVvg~~~v~~~~g~~~SPAa~AG-Lq~GDiIvsING~~V 145 (402)
T TIGR02860 105 KGVLVVGFSDIETEKGKIHSPGEEAG-IQIGDRILKINGEKI 145 (402)
T ss_pred CEEEEEEEEcccccCCCCCCHHHHcC-CCCCCEEEEECCEEC
Confidence 477764432 258999999 999999999999875
No 92
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=95.26 E-value=0.019 Score=38.68 Aligned_cols=35 Identities=20% Similarity=0.448 Sum_probs=22.4
Q ss_pred CCCeEEEEECCC--------ChhhhcC-CCCCCCEEEEECCEeC
Q psy12206 130 DNGIYVTKIMDG--------GAAQVDG-RLQVGDKLIAVRNSTR 164 (164)
Q Consensus 130 ~~gv~I~~v~~g--------s~A~~~G-~L~~GD~Il~VNg~~v 164 (164)
..+..|..|.+| ||-.+.| .+++||.|++|||+++
T Consensus 11 ~~~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v 54 (88)
T PF14685_consen 11 NGGYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPV 54 (88)
T ss_dssp TTEEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-
T ss_pred CCEEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEEC
Confidence 346678999987 5555655 2579999999999975
No 93
>KOG0609|consensus
Probab=95.01 E-value=0.015 Score=50.73 Aligned_cols=33 Identities=36% Similarity=0.646 Sum_probs=31.5
Q ss_pred CeEEEEECCCChhhhcCCCCCCCEEEEECCEeC
Q psy12206 132 GIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTR 164 (164)
Q Consensus 132 gv~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v 164 (164)
.++|..+..|+.|++.|.|+.||.|++|||++|
T Consensus 147 ~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v 179 (542)
T KOG0609|consen 147 KVVVARIMHGGMADRQGLLHVGDEILEVNGISV 179 (542)
T ss_pred ccEEeeeccCCcchhccceeeccchheecCeec
Confidence 689999999999999999999999999999875
No 94
>KOG3549|consensus
Probab=94.87 E-value=0.028 Score=46.86 Aligned_cols=52 Identities=25% Similarity=0.385 Sum_probs=39.9
Q ss_pred eeE-eeeccCCCCcccC---CCCCeEEEEECCCChhhhcCCCCCCCEEEEECCEeC
Q psy12206 113 IFL-CNIAGGIGNQHIP---GDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTR 164 (164)
Q Consensus 113 v~l-~~~~~~~~~~~~~---~~~gv~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v 164 (164)
|+| ....||+|..... -+.++.|+.|.++-.|+..|.|-.||-|+.|||+.|
T Consensus 58 VtirRQ~vGGlGLSIKGGaEHn~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v 113 (505)
T KOG3549|consen 58 VTIRRQKVGGLGLSIKGGAEHNLPVVISKIYKDQAADITGQLFVGDAILQVNGIYV 113 (505)
T ss_pred EEEEeeecCcceeeeccccccCccEEeehhhhhhhhhhcCceEeeeeeEEeccEEe
Confidence 555 3334555543322 245999999999999999999999999999999864
No 95
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=94.04 E-value=0.099 Score=43.08 Aligned_cols=34 Identities=32% Similarity=0.648 Sum_probs=31.4
Q ss_pred CcEEEEEeCCCChhhhcCCCCCCCEEEEECCeeccC
Q psy12206 71 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTSED 106 (164)
Q Consensus 71 ~gv~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~v~~ 106 (164)
.|+|+..+..+++| .|.|+.||.|++|||.++.+
T Consensus 130 ~gvyv~~v~~~~~~--~gkl~~gD~i~avdg~~f~s 163 (342)
T COG3480 130 AGVYVLSVIDNSPF--KGKLEAGDTIIAVDGEPFTS 163 (342)
T ss_pred eeEEEEEccCCcch--hceeccCCeEEeeCCeecCC
Confidence 57899999999999 66899999999999999998
No 96
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=93.83 E-value=0.14 Score=34.42 Aligned_cols=36 Identities=19% Similarity=0.421 Sum_probs=23.1
Q ss_pred CcEEEEEeCCC--------ChhhhcC-CCCCCCEEEEECCeeccC
Q psy12206 71 NGIYVTKIMDG--------GAAQVDG-RLQVGDKLIAVRNSTSED 106 (164)
Q Consensus 71 ~gv~V~~V~~g--------s~A~~~G-~L~~GD~Il~VNG~~v~~ 106 (164)
.+..|..|.++ ||-.+.| .+++||.|++|||+++..
T Consensus 12 ~~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~~ 56 (88)
T PF14685_consen 12 GGYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVTA 56 (88)
T ss_dssp TEEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-BT
T ss_pred CEEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECCC
Confidence 45678888886 5555555 255999999999999986
No 97
>KOG1421|consensus
Probab=93.72 E-value=0.22 Score=45.11 Aligned_cols=87 Identities=21% Similarity=0.151 Sum_probs=56.7
Q ss_pred CcEEEEEeCCCChhhhcCCCCCCCEEEEECCeeccC----CcCC------------CceeE----------eee-ccCCC
Q psy12206 71 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTSED----KRAS------------PGIFL----------CNI-AGGIG 123 (164)
Q Consensus 71 ~gv~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~v~~----~~a~------------~~v~l----------~~~-~~~~~ 123 (164)
+-..|++|.+.-+- -|..||.|+++||+.+.. .+.. ..+++ +-+ .|..=
T Consensus 771 ql~~ishv~~~~~k----il~~gdiilsvngk~itr~~dl~d~~eid~~ilrdg~~~~ikipt~p~~et~r~vi~~gail 846 (955)
T KOG1421|consen 771 QLYVISHVRPLLHK----ILGVGDIILSVNGKMITRLSDLHDFEEIDAVILRDGIEMEIKIPTYPEYETSRAVIWMGAIL 846 (955)
T ss_pred eEEEEEeeccCccc----ccccccEEEEecCeEEeeehhhhhhhhhheeeeecCcEEEEEeccccccccceEEEEEeccc
Confidence 33578888887543 278999999999998876 1100 00111 000 00000
Q ss_pred Cc--------ccCCCCCeEEEEECCCChhhhcCCCCCCCEEEEECCEe
Q psy12206 124 NQ--------HIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNST 163 (164)
Q Consensus 124 ~~--------~~~~~~gv~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~ 163 (164)
.. ......|+|+++...||||.+ + |+.-.-|.+|||.+
T Consensus 847 q~ph~av~~q~edlp~gvyvt~rg~gspalq-~-l~aa~fitavng~~ 892 (955)
T KOG1421|consen 847 QPPHSAVFEQVEDLPEGVYVTSRGYGSPALQ-M-LRAAHFITAVNGHD 892 (955)
T ss_pred cCchHHHHHHHhccCCceEEeecccCChhHh-h-cchheeEEEecccc
Confidence 00 001125999999999999999 7 99999999999975
No 98
>KOG1320|consensus
Probab=93.55 E-value=0.09 Score=45.62 Aligned_cols=35 Identities=20% Similarity=0.421 Sum_probs=33.5
Q ss_pred CcEEEEEeCCCChhhhcCCCCCCCEEEEECCeeccC
Q psy12206 71 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTSED 106 (164)
Q Consensus 71 ~gv~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~v~~ 106 (164)
++++++.|.|++++...+ +.+||+|..|||.++.+
T Consensus 398 q~v~is~Vlp~~~~~~~~-~~~g~~V~~vng~~V~n 432 (473)
T KOG1320|consen 398 QLVLVSQVLPGSINGGYG-LKPGDQVVKVNGKPVKN 432 (473)
T ss_pred eEEEEEEeccCCCccccc-ccCCCEEEEECCEEeec
Confidence 578999999999999999 99999999999999998
No 99
>KOG1738|consensus
Probab=93.36 E-value=0.092 Score=46.67 Aligned_cols=51 Identities=22% Similarity=0.378 Sum_probs=44.4
Q ss_pred cCCCCcCEEEecCCCCCCCCCCCcEEEEEeCCCChhhhcCCCCCCCEEEEECCeeccC
Q psy12206 49 KGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTSED 106 (164)
Q Consensus 49 k~~~glGf~i~gg~~~~~~~~~~gv~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~v~~ 106 (164)
+...|+|+-|...- +..++|+.+.+++||+....+..||.+++||+.-+.+
T Consensus 210 kp~eglg~~I~Ssy-------dg~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVg 260 (638)
T KOG1738|consen 210 SPSEGLGLYIDSSY-------DGPHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVG 260 (638)
T ss_pred CcccCCceEEeeec-------CCceeccccccCChHHHhhcccCccceeeeccccccc
Confidence 44578999988764 4668999999999999999999999999999988777
No 100
>KOG3532|consensus
Probab=93.20 E-value=0.15 Score=46.16 Aligned_cols=47 Identities=19% Similarity=0.343 Sum_probs=39.9
Q ss_pred CCcCEEEecCCCCCCCCCCCcEEEEEeCCCChhhhcCCCCCCCEEEEECCeeccC
Q psy12206 52 KGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTSED 106 (164)
Q Consensus 52 ~glGf~i~gg~~~~~~~~~~gv~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~v~~ 106 (164)
..+|+.+... ..+.+-|-.|.++++|.++. +++||.+++|||+++.+
T Consensus 386 ~~ig~vf~~~-------~~~~v~v~tv~~ns~a~k~~-~~~gdvlvai~~~pi~s 432 (1051)
T KOG3532|consen 386 SPIGLVFDKN-------TNRAVKVCTVEDNSLADKAA-FKPGDVLVAINNVPIRS 432 (1051)
T ss_pred CceeEEEecC-------CceEEEEEEecCCChhhHhc-CCCcceEEEecCccchh
Confidence 3467665543 34778999999999999999 99999999999999998
No 101
>KOG3532|consensus
Probab=93.05 E-value=0.12 Score=46.77 Aligned_cols=33 Identities=24% Similarity=0.372 Sum_probs=30.1
Q ss_pred CCeEEEEECCCChhhhcCCCCCCCEEEEECCEeC
Q psy12206 131 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTR 164 (164)
Q Consensus 131 ~gv~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v 164 (164)
.-+.|..|.++++|.++. |.+||.+++|||.+|
T Consensus 398 ~~v~v~tv~~ns~a~k~~-~~~gdvlvai~~~pi 430 (1051)
T KOG3532|consen 398 RAVKVCTVEDNSLADKAA-FKPGDVLVAINNVPI 430 (1051)
T ss_pred eEEEEEEecCCChhhHhc-CCCcceEEEecCccc
Confidence 456689999999999998 999999999999875
No 102
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=90.02 E-value=0.37 Score=39.84 Aligned_cols=32 Identities=34% Similarity=0.691 Sum_probs=28.9
Q ss_pred CCeEEEEECCCChhhhcCCCCCCCEEEEECCEeC
Q psy12206 131 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTR 164 (164)
Q Consensus 131 ~gv~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v 164 (164)
.|+|+..+..++++. |.|+.||.|.+|||+++
T Consensus 130 ~gvyv~~v~~~~~~~--gkl~~gD~i~avdg~~f 161 (342)
T COG3480 130 AGVYVLSVIDNSPFK--GKLEAGDTIIAVDGEPF 161 (342)
T ss_pred eeEEEEEccCCcchh--ceeccCCeEEeeCCeec
Confidence 599999999999986 56999999999999975
No 103
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=89.75 E-value=0.46 Score=38.60 Aligned_cols=28 Identities=21% Similarity=0.344 Sum_probs=22.8
Q ss_pred EEECCCChh---hhcCCCCCCCEEEEECCEeC
Q psy12206 136 TKIMDGGAA---QVDGRLQVGDKLIAVRNSTR 164 (164)
Q Consensus 136 ~~v~~gs~A---~~~G~L~~GD~Il~VNg~~v 164 (164)
..|.||..+ .++| ||+||.+++|||.++
T Consensus 209 Yrl~Pgkd~~lF~~~G-Lq~GDva~sING~dL 239 (276)
T PRK09681 209 YAVKPGADRSLFDASG-FKEGDIAIALNQQDF 239 (276)
T ss_pred EEECCCCcHHHHHHcC-CCCCCEEEEeCCeeC
Confidence 577788654 3678 999999999999875
No 104
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=88.86 E-value=0.45 Score=38.66 Aligned_cols=29 Identities=24% Similarity=0.382 Sum_probs=23.9
Q ss_pred EeCCCC---hhhhcCCCCCCCEEEEECCeeccC
Q psy12206 77 KIMDGG---AAQVDGRLQVGDKLIAVRNSTSED 106 (164)
Q Consensus 77 ~V~~gs---~A~~~G~L~~GD~Il~VNG~~v~~ 106 (164)
.+.|+. .-.+.| ||+||.+++|||.++.+
T Consensus 210 rl~Pgkd~~lF~~~G-Lq~GDva~sING~dL~D 241 (276)
T PRK09681 210 AVKPGADRSLFDASG-FKEGDIAIALNQQDFTD 241 (276)
T ss_pred EECCCCcHHHHHHcC-CCCCCEEEEeCCeeCCC
Confidence 455653 456789 99999999999999987
No 105
>KOG2921|consensus
Probab=87.99 E-value=0.54 Score=39.99 Aligned_cols=47 Identities=17% Similarity=0.149 Sum_probs=38.9
Q ss_pred cCCCCCCCCCCCcEEEEEeCCCChhhhcCCCCCCCEEEEECCeeccC
Q psy12206 60 GGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTSED 106 (164)
Q Consensus 60 gg~~~~~~~~~~gv~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~v~~ 106 (164)
+-..+|.++...++.|.+|...||+.---.|.+||.|.++||.++++
T Consensus 209 pViLsPfya~g~gV~Vtev~~~Spl~gprGL~vgdvitsldgcpV~~ 255 (484)
T KOG2921|consen 209 PVILSPFYAHGEGVTVTEVPSVSPLFGPRGLSVGDVITSLDGCPVHK 255 (484)
T ss_pred hHhhchhhhcCceEEEEeccccCCCcCcccCCccceEEecCCcccCC
Confidence 34456777778999999999999875543499999999999999988
No 106
>PF12812 PDZ_1: PDZ-like domain
Probab=87.72 E-value=1.3 Score=28.98 Aligned_cols=34 Identities=21% Similarity=0.279 Sum_probs=28.0
Q ss_pred cEEEEEeCCCChhhhcCCCCCCCEEEEECCeeccC
Q psy12206 72 GIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTSED 106 (164)
Q Consensus 72 gv~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~v~~ 106 (164)
+.++.....++++...| +..|..|.+||++++.+
T Consensus 31 ~gv~v~~~~g~~~~~~~-i~~g~iI~~Vn~kpt~~ 64 (78)
T PF12812_consen 31 GGVYVAVSGGSLAFAGG-ISKGFIITSVNGKPTPD 64 (78)
T ss_pred CEEEEEecCCChhhhCC-CCCCeEEEeECCcCCcC
Confidence 35555577888887777 99999999999999987
No 107
>KOG0606|consensus
Probab=87.19 E-value=0.46 Score=45.10 Aligned_cols=31 Identities=26% Similarity=0.334 Sum_probs=28.4
Q ss_pred eEEEEECCCChhhhcCCCCCCCEEEEECCEeC
Q psy12206 133 IYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTR 164 (164)
Q Consensus 133 v~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v 164 (164)
..+.+|.+++||..+| |+.+|.|+.|||++|
T Consensus 660 h~v~sv~egsPA~~ag-ls~~DlIthvnge~v 690 (1205)
T KOG0606|consen 660 HSVGSVEEGSPAFEAG-LSAGDLITHVNGEPV 690 (1205)
T ss_pred eeeeeecCCCCccccC-CCccceeEeccCccc
Confidence 4588999999999999 999999999999875
No 108
>PF12812 PDZ_1: PDZ-like domain
Probab=86.54 E-value=1.5 Score=28.71 Aligned_cols=32 Identities=19% Similarity=0.235 Sum_probs=27.0
Q ss_pred CeEEEEECCCChhhhcCCCCCCCEEEEECCEeC
Q psy12206 132 GIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTR 164 (164)
Q Consensus 132 gv~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v 164 (164)
+.++.+...|+++...+ +..|-.|.+||++++
T Consensus 31 ~gv~v~~~~g~~~~~~~-i~~g~iI~~Vn~kpt 62 (78)
T PF12812_consen 31 GGVYVAVSGGSLAFAGG-ISKGFIITSVNGKPT 62 (78)
T ss_pred CEEEEEecCCChhhhCC-CCCCeEEEeECCcCC
Confidence 56666778889888877 999999999999874
No 109
>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]
Probab=83.73 E-value=1.6 Score=36.22 Aligned_cols=32 Identities=28% Similarity=0.474 Sum_probs=29.4
Q ss_pred EEEEeCCCChhhhcCCCCCCCEEEEECCeeccC
Q psy12206 74 YVTKIMDGGAAQVDGRLQVGDKLIAVRNSTSED 106 (164)
Q Consensus 74 ~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~v~~ 106 (164)
++..+..+++|+.+| +++||+++++|+..+.+
T Consensus 132 ~~~~v~~~s~a~~a~-l~~Gd~iv~~~~~~i~~ 163 (375)
T COG0750 132 VVGEVAPKSAAALAG-LRPGDRIVAVDGEKVAS 163 (375)
T ss_pred eeeecCCCCHHHHcC-CCCCCEEEeECCEEccC
Confidence 444799999999999 99999999999999998
No 110
>KOG3938|consensus
Probab=83.10 E-value=0.6 Score=37.77 Aligned_cols=53 Identities=15% Similarity=0.267 Sum_probs=40.8
Q ss_pred ceeEeeeccCCCCcccC-CCCCeEEEEECCCChhhhcCCCCCCCEEEEECCEeC
Q psy12206 112 GIFLCNIAGGIGNQHIP-GDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTR 164 (164)
Q Consensus 112 ~v~l~~~~~~~~~~~~~-~~~gv~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v 164 (164)
+|.+++....+|.+... +..-.||..+.+||.-++--.+++||.|-+|||+++
T Consensus 129 Ev~v~KsedalGlTITDNG~GyAFIKrIkegsvidri~~i~VGd~IEaiNge~i 182 (334)
T KOG3938|consen 129 EVEVVKSEDALGLTITDNGAGYAFIKRIKEGSVIDRIEAICVGDHIEAINGESI 182 (334)
T ss_pred eEEEEecccccceEEeeCCcceeeeEeecCCchhhhhhheeHHhHHHhhcCccc
Confidence 36667766666665443 333558999999999998766999999999999875
No 111
>KOG3834|consensus
Probab=82.33 E-value=6 Score=34.09 Aligned_cols=73 Identities=19% Similarity=0.193 Sum_probs=48.7
Q ss_pred eeeEEEeecccCCCCCceEEEEEEEcCC-CC---cCEEEecCCCCCCCCCCCcEEEEEeCCCChhhhcCCCC-CCCEEEE
Q psy12206 24 SKFMYVRRKKVTRQGNMKILDIELVKGN-KG---LGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQ-VGDKLIA 98 (164)
Q Consensus 24 ~~~~~v~~~~~~~~~~~~~~~v~L~k~~-~g---lGf~i~gg~~~~~~~~~~gv~V~~V~~gs~A~~~G~L~-~GD~Il~ 98 (164)
+|+|++...+-. +++.+.+.... -+ ||++|.=..... +...-+=|-+|.+++||+++| |+ -.|.|+-
T Consensus 65 kVkltv~n~kt~-----~~R~v~I~ps~~wggqllGvsvrFcsf~~--A~~~vwHvl~V~p~SPaalAg-l~~~~DYivG 136 (462)
T KOG3834|consen 65 KVKLTVYNSKTQ-----EVRIVEIVPSNNWGGQLLGVSVRFCSFDG--AVESVWHVLSVEPNSPAALAG-LRPYTDYIVG 136 (462)
T ss_pred ceEEEEEecccc-----eeEEEEecccccccccccceEEEeccCcc--chhheeeeeecCCCCHHHhcc-cccccceEec
Confidence 388888776642 45566665443 34 888876443322 123445677899999999999 77 6899998
Q ss_pred E-CCeec
Q psy12206 99 V-RNSTS 104 (164)
Q Consensus 99 V-NG~~v 104 (164)
+ |.+.-
T Consensus 137 ~~~~~~~ 143 (462)
T KOG3834|consen 137 IWDAVMH 143 (462)
T ss_pred chhhhcc
Confidence 8 54433
No 112
>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]
Probab=81.78 E-value=2.2 Score=35.44 Aligned_cols=29 Identities=31% Similarity=0.518 Sum_probs=26.0
Q ss_pred EEEECCCChhhhcCCCCCCCEEEEECCEeC
Q psy12206 135 VTKIMDGGAAQVDGRLQVGDKLIAVRNSTR 164 (164)
Q Consensus 135 I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v 164 (164)
+..+...++|..+| ++.||+++++|++.+
T Consensus 133 ~~~v~~~s~a~~a~-l~~Gd~iv~~~~~~i 161 (375)
T COG0750 133 VGEVAPKSAAALAG-LRPGDRIVAVDGEKV 161 (375)
T ss_pred eeecCCCCHHHHcC-CCCCCEEEeECCEEc
Confidence 44799999999999 999999999999864
No 113
>KOG1738|consensus
Probab=79.56 E-value=1.4 Score=39.51 Aligned_cols=36 Identities=19% Similarity=0.304 Sum_probs=31.2
Q ss_pred CCCCeEEEEECCCChhhhcCCCCCCCEEEEECCEeC
Q psy12206 129 GDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTR 164 (164)
Q Consensus 129 ~~~gv~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v 164 (164)
-+..++|+++.+++||.....|..||.++.||++.|
T Consensus 223 ydg~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtv 258 (638)
T KOG1738|consen 223 YDGPHVTSKIFEQSPADYRQKILDGDEVLQINEQTV 258 (638)
T ss_pred cCCceeccccccCChHHHhhcccCccceeeeccccc
Confidence 345667899999999999999999999999998753
No 114
>KOG4371|consensus
Probab=79.35 E-value=4.2 Score=38.78 Aligned_cols=83 Identities=24% Similarity=0.406 Sum_probs=63.2
Q ss_pred hhccCceeeEEEeecccCCC---------CCceEEEEEEEcCC-CCcCEEEecCCCCCCCCCCCcEEEEEeCCCChhhhc
Q psy12206 18 ALNVGISKFMYVRRKKVTRQ---------GNMKILDIELVKGN-KGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVD 87 (164)
Q Consensus 18 ~~~~~~~~~~~v~~~~~~~~---------~~~~~~~v~L~k~~-~glGf~i~gg~~~~~~~~~~gv~V~~V~~gs~A~~~ 87 (164)
....+..+.+-+.|..|.-. ...-.+.+.|.+.+ .++|+.+..... ..++|+..+..++.|...
T Consensus 1213 ~~~~~~~~~~~~~r~~~~~~d~~~~s~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~------s~~~~~~~~~~~~~a~~~ 1286 (1332)
T KOG4371|consen 1213 LRGGGDRVVLGVQRPPPAYSDQHHASSTSASAPLISVMLLKKPMATLGLSLAKRTM------SDGIFIRNIAQDSAASSE 1286 (1332)
T ss_pred HhccCceEEEEeecCCcccccchhhhhhcccchhhhheeeecccccccccccccCc------CCceeeeccccccccccc
Confidence 44567778888888776431 11234456666666 789999876553 468999999999999999
Q ss_pred CCCCCCCEEEEECCeeccC
Q psy12206 88 GRLQVGDKLIAVRNSTSED 106 (164)
Q Consensus 88 G~L~~GD~Il~VNG~~v~~ 106 (164)
|+++.||++..-+|.++..
T Consensus 1287 ~~~r~g~~~~~~~~~~~~~ 1305 (1332)
T KOG4371|consen 1287 GTLRVGDRLVSLDGEPVDG 1305 (1332)
T ss_pred ccccccceeeccCCccCCC
Confidence 9999999999999998876
No 115
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=76.14 E-value=6.4 Score=31.51 Aligned_cols=26 Identities=38% Similarity=0.484 Sum_probs=22.5
Q ss_pred CCChhhhcCCCCCCCEEEEECCeeccC
Q psy12206 80 DGGAAQVDGRLQVGDKLIAVRNSTSED 106 (164)
Q Consensus 80 ~gs~A~~~G~L~~GD~Il~VNG~~v~~ 106 (164)
+++.-+..| ||.||..+++|+.++.+
T Consensus 216 d~slF~~sg-lq~GDIavaiNnldltd 241 (275)
T COG3031 216 DGSLFYKSG-LQRGDIAVAINNLDLTD 241 (275)
T ss_pred Ccchhhhhc-CCCcceEEEecCcccCC
Confidence 345667788 99999999999999988
No 116
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=75.15 E-value=2.5 Score=33.78 Aligned_cols=29 Identities=31% Similarity=0.306 Sum_probs=22.1
Q ss_pred EEEECCCChhhhcCCCCCCCEEEEECCEeC
Q psy12206 135 VTKIMDGGAAQVDGRLQVGDKLIAVRNSTR 164 (164)
Q Consensus 135 I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v 164 (164)
+.-..+++.-+..| ||.||+.+++|+.++
T Consensus 211 ~~pgkd~slF~~sg-lq~GDIavaiNnldl 239 (275)
T COG3031 211 FEPGKDGSLFYKSG-LQRGDIAVAINNLDL 239 (275)
T ss_pred ecCCCCcchhhhhc-CCCcceEEEecCccc
Confidence 33344456667788 999999999999864
No 117
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=72.27 E-value=5.8 Score=30.29 Aligned_cols=73 Identities=19% Similarity=0.258 Sum_probs=46.2
Q ss_pred hcCCCCCCCEE-EEECCeeccCCcCCCceeEeeecc--------CCCCcccCCCCCeEEEEECCCChhhhcCCCCCCCEE
Q psy12206 86 VDGRLQVGDKL-IAVRNSTSEDKRASPGIFLCNIAG--------GIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKL 156 (164)
Q Consensus 86 ~~G~L~~GD~I-l~VNG~~v~~~~a~~~v~l~~~~~--------~~~~~~~~~~~gv~I~~v~~gs~A~~~G~L~~GD~I 156 (164)
....+.+|+.+ +.|.|.+..++.....+.+--..+ ..|.........+.|..|..||+|+++| +.-++.|
T Consensus 68 ~~~~~~~g~~lrl~V~G~~~~G~~~~k~v~lpl~~~~~g~eRL~~~GL~l~~e~~~~~Vd~v~fgS~A~~~g-~d~d~~I 146 (183)
T PF11874_consen 68 VAEQLPPGSSLRLRVEGPDFEGDPVTKTVLLPLGDGADGEERLEAAGLTLMEEGGKVIVDEVEFGSPAEKAG-IDFDWEI 146 (183)
T ss_pred HHhcCCCCCEEEEEEEccCCCCCceEEEEEEEcCCCCCHHHHHHhCCCEEEeeCCEEEEEecCCCCHHHHcC-CCCCcEE
Confidence 34457777766 667787776533222222200000 1233333444578899999999999999 9999999
Q ss_pred EEE
Q psy12206 157 IAV 159 (164)
Q Consensus 157 l~V 159 (164)
.+|
T Consensus 147 ~~v 149 (183)
T PF11874_consen 147 TEV 149 (183)
T ss_pred EEE
Confidence 886
No 118
>PF07591 PT-HINT: Pretoxin HINT domain; InterPro: IPR011451 This entry represents a cluster of homologous proteins identified in Leptospira interrogans. One member (Q8EZX6 from SWISSPROT) has been predicted to be a phenazine biosynthesis family protein.; PDB: 2JNQ_A 2JMZ_A.
Probab=71.06 E-value=2 Score=30.72 Aligned_cols=70 Identities=21% Similarity=0.262 Sum_probs=12.2
Q ss_pred CCCCCEEEEECCeeccC--CcCC-----CceeEeeeccCCCCcccCCCCCeEEEEECCCChhhhcCCCCCCCEEEEECCE
Q psy12206 90 LQVGDKLIAVRNSTSED--KRAS-----PGIFLCNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNS 162 (164)
Q Consensus 90 L~~GD~Il~VNG~~v~~--~~a~-----~~v~l~~~~~~~~~~~~~~~~gv~I~~v~~gs~A~~~G~L~~GD~Il~VNg~ 162 (164)
+++||++++-|...-+. +... ..-.+..+.-+......+...++++.. .-.-+|+.|++||+|+..+|.
T Consensus 14 I~~GD~Vls~d~~tg~~~~~~V~~~f~~~~~~l~~i~~~~~~i~~T~~HPF~~~~----~gWv~A~~L~~GD~L~~~~G~ 89 (130)
T PF07591_consen 14 IKVGDRVLSYDEETGETEYKPVTATFVRETDELVDITLEDETITTTPNHPFWVEG----KGWVEAEDLKVGDRLLTADGS 89 (130)
T ss_dssp --------------------------------------------------------------EEGGG--TTSEEEEE-SS
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccch----HhhhhHhhCCCCCEEEcCCCC
Confidence 89999999987644322 1000 001122221111222233445666642 224445569999999999885
Q ss_pred e
Q psy12206 163 T 163 (164)
Q Consensus 163 ~ 163 (164)
.
T Consensus 90 ~ 90 (130)
T PF07591_consen 90 W 90 (130)
T ss_dssp E
T ss_pred E
Confidence 3
No 119
>KOG4407|consensus
Probab=61.00 E-value=3.7 Score=40.13 Aligned_cols=35 Identities=26% Similarity=0.531 Sum_probs=32.1
Q ss_pred CcEEEEEeCCCChhhhcCCCCCCCEEEEECCeeccC
Q psy12206 71 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTSED 106 (164)
Q Consensus 71 ~gv~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~v~~ 106 (164)
..+|+.+|.++++|..+- ||.||+++.||..++..
T Consensus 143 eT~~~~eV~~n~~~~~a~-LQ~~~~V~~v~~q~~A~ 177 (1973)
T KOG4407|consen 143 ETIFIKEVQANGPAHYAN-LQTGDRVLMVNNQPIAG 177 (1973)
T ss_pred hhhhhhhhccCChhHHHh-hhccceeEEeecCcccc
Confidence 347999999999999998 99999999999988876
No 120
>KOG2921|consensus
Probab=49.27 E-value=17 Score=31.29 Aligned_cols=33 Identities=24% Similarity=0.343 Sum_probs=28.4
Q ss_pred CCeEEEEECCCChhhhc-CCCCCCCEEEEECCEeC
Q psy12206 131 NGIYVTKIMDGGAAQVD-GRLQVGDKLIAVRNSTR 164 (164)
Q Consensus 131 ~gv~I~~v~~gs~A~~~-G~L~~GD~Il~VNg~~v 164 (164)
.|+.|+.|...||+.-- | |.+||.|.++||-+|
T Consensus 220 ~gV~Vtev~~~Spl~gprG-L~vgdvitsldgcpV 253 (484)
T KOG2921|consen 220 EGVTVTEVPSVSPLFGPRG-LSVGDVITSLDGCPV 253 (484)
T ss_pred ceEEEEeccccCCCcCccc-CCccceEEecCCccc
Confidence 48899999999988743 6 999999999999765
No 121
>PF01079 Hint: Hint module; InterPro: IPR001767 This domain identifies a group of cysteine peptidases correspond to MEROPS peptidase family C46 (clan CH). The type example is the Hedgehog protein from Drosophila melanogaster (Fruit fly). These are involved in intracellular signalling required for a variety of patterning events during development. The hedgehog family of proteins self process by a cysteine-dependent mechanism, which is a one-time autolytic cleavage. It is differentiated from a typical peptidase reaction by the fact that the newly-formed carboxyl group is esterified with cholesterol, rather than being left free. The three-dimensional structure of the autolytic domain of the hedgehog protein of D. melanogaster shows that it is formed from two divergent copies of a module that also occurs in inteins, called a Hint domain [,].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3K7H_B 3K7I_B 3K7G_B 1AT0_A 3MXW_A 3M1N_B 3HO5_H 2WFR_A 2WFQ_A 2WG3_B ....
Probab=48.68 E-value=18 Score=28.27 Aligned_cols=22 Identities=36% Similarity=0.820 Sum_probs=11.6
Q ss_pred eCCCChhhhcCCCCCCCEEEEEC
Q psy12206 78 IMDGGAAQVDGRLQVGDKLIAVR 100 (164)
Q Consensus 78 V~~gs~A~~~G~L~~GD~Il~VN 100 (164)
...|+...-+- |++||+++.++
T Consensus 21 ~~~G~~k~m~~-L~iGD~Vla~d 42 (217)
T PF01079_consen 21 LEDGGRKRMSD-LKIGDRVLAVD 42 (217)
T ss_dssp BTTS-EEEGGG---TT-EEEEE-
T ss_pred eCCCCEeEHHH-CCCCCEEEEec
Confidence 34444554454 99999999997
No 122
>COG5233 GRH1 Peripheral Golgi membrane protein [Intracellular trafficking and secretion]
Probab=44.38 E-value=15 Score=30.63 Aligned_cols=29 Identities=21% Similarity=0.418 Sum_probs=25.7
Q ss_pred EEEECCCChhhhcCCCCCCCEEEEECCEeC
Q psy12206 135 VTKIMDGGAAQVDGRLQVGDKLIAVRNSTR 164 (164)
Q Consensus 135 I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v 164 (164)
+..|.+.+||+++| +-.||-|+-+|+.++
T Consensus 67 ~lrv~~~~~~e~~~-~~~~dyilg~n~Dp~ 95 (417)
T COG5233 67 VLRVNPESPAEKAG-MVVGDYILGINEDPL 95 (417)
T ss_pred heeccccChhHhhc-cccceeEEeecCCcH
Confidence 56788999999999 999999999998653
No 123
>COG5233 GRH1 Peripheral Golgi membrane protein [Intracellular trafficking and secretion]
Probab=37.46 E-value=23 Score=29.61 Aligned_cols=33 Identities=18% Similarity=0.329 Sum_probs=28.2
Q ss_pred EEEEEeCCCChhhhcCCCCCCCEEEEECCeeccC
Q psy12206 73 IYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTSED 106 (164)
Q Consensus 73 v~V~~V~~gs~A~~~G~L~~GD~Il~VNG~~v~~ 106 (164)
+-+-+|.|.++|+++| +-.||.|+-+|+-++.-
T Consensus 65 l~~lrv~~~~~~e~~~-~~~~dyilg~n~Dp~~f 97 (417)
T COG5233 65 LEVLRVNPESPAEKAG-MVVGDYILGINEDPLRF 97 (417)
T ss_pred hhheeccccChhHhhc-cccceeEEeecCCcHHH
Confidence 4566789999999999 99999999999866653
No 124
>TIGR03432 yjhG_yagF probable dehydratase, YjhG/YagF family. This homolog of dihydroxy-acid dehydratases has an odd, sparse distribution. Members are found in two Acidobacteria, two Planctomycetes, Bacillus clausii KSM-K16, and (in two copies each) in strains K12-MG1655 and W3110 of Escherichia coli. The local context is not well conserved, but a few members are adjacent to homologs of the gluconate:H+ symporter (see TIGR00791).
Probab=27.07 E-value=74 Score=29.04 Aligned_cols=77 Identities=12% Similarity=0.116 Sum_probs=44.0
Q ss_pred eEEEeecccCCCCCceEEEEEEEcCCCCcCEEEecCCCCCCCCCCCcEEEEEeCCC----ChhhhcCCCCCCCEEE-EEC
Q psy12206 26 FMYVRRKKVTRQGNMKILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDG----GAAQVDGRLQVGDKLI-AVR 100 (164)
Q Consensus 26 ~~~v~~~~~~~~~~~~~~~v~L~k~~~glGf~i~gg~~~~~~~~~~gv~V~~V~~g----s~A~~~G~L~~GD~Il-~VN 100 (164)
-+++|+.=|......|....+......++|..+.-=.+-.++....|..|.+|.|. +|-+ .++.||+|. -|+
T Consensus 490 VvVIRyeGPkG~GMpEml~~t~al~g~glG~~VALITDGRFSG~S~G~~IGHVsPEAa~GGPIa---lVrdGD~I~IDi~ 566 (640)
T TIGR03432 490 VLVLIGRGPSGTGMEETYQVTSALKYLSFGKHVALITDARFSGVSTGACIGHVGPEALAGGPIG---KVRDGDLIEIIID 566 (640)
T ss_pred EEEEeCCCCCCCCchhhhcchhhHhhcCCCCeEEEecccCcCCCCCCCEEEEEChhhhCCCcEE---EEeCCCEEEEEcC
Confidence 46678888877544443333322222457765443333333334578899999985 4433 388999984 345
Q ss_pred Ceecc
Q psy12206 101 NSTSE 105 (164)
Q Consensus 101 G~~v~ 105 (164)
...+.
T Consensus 567 ~r~l~ 571 (640)
T TIGR03432 567 RNTLE 571 (640)
T ss_pred CCeEE
Confidence 54443
No 125
>PRK15464 cold shock-like protein CspH; Provisional
Probab=25.79 E-value=1.8e+02 Score=18.36 Aligned_cols=44 Identities=20% Similarity=0.271 Sum_probs=25.0
Q ss_pred EEEEEcCCCCcCEEEecCCCCCCCCCCCcEEEE--EeCCCChhhhcCCCCCCCEEEE
Q psy12206 44 DIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVT--KIMDGGAAQVDGRLQVGDKLIA 98 (164)
Q Consensus 44 ~v~L~k~~~glGf~i~gg~~~~~~~~~~gv~V~--~V~~gs~A~~~G~L~~GD~Il~ 98 (164)
+|+-....+||||-.... +..-+|+. .+.+.+. . .|++||+|..
T Consensus 8 ~Vk~fn~~KGfGFI~~~~-------g~~DvFvH~s~l~~~g~---~-~l~~G~~V~f 53 (70)
T PRK15464 8 IVKTFDRKSGKGFIIPSD-------GRKEVQVHISAFTPRDA---E-VLIPGLRVEF 53 (70)
T ss_pred EEEEEECCCCeEEEccCC-------CCccEEEEehhehhcCC---C-CCCCCCEEEE
Confidence 355566779999954432 12346654 3333221 2 3899998754
No 126
>PRK08211 putative dehydratase; Provisional
Probab=25.20 E-value=83 Score=28.80 Aligned_cols=78 Identities=13% Similarity=0.098 Sum_probs=44.8
Q ss_pred eEEEeecccCCCCCceEEEEEEEcCCCCcCEEEecCCCCCCCCCCCcEEEEEeCCC----ChhhhcCCCCCCCEEE-EEC
Q psy12206 26 FMYVRRKKVTRQGNMKILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDG----GAAQVDGRLQVGDKLI-AVR 100 (164)
Q Consensus 26 ~~~v~~~~~~~~~~~~~~~v~L~k~~~glGf~i~gg~~~~~~~~~~gv~V~~V~~g----s~A~~~G~L~~GD~Il-~VN 100 (164)
-+++|+.=|......|....+......++|.++.-=.+-.++....|..|.+|.|. +|-+. ++.||.|. -|+
T Consensus 496 VvVIRyeGPkG~GMpEml~~t~al~g~glG~~VALITDGRFSG~S~G~~IGHVsPEAa~GGPIAl---VrdGD~I~IDi~ 572 (655)
T PRK08211 496 ILVLIGGGPSGTGMEETYQITSALKHLSFGKHVSLITDARFSGVSTGACIGHVGPEALAGGPIGK---LRDGDLIEIIID 572 (655)
T ss_pred EEEEeCCCCCCCCchhhhchhhhHhhcCCCCeEEEeccCCCCCCCCCCEEEEEChhhhcCCcEEE---EeCCCEEEEECC
Confidence 45678888877544443333322223457665443233333334578899999985 44333 88999983 355
Q ss_pred CeeccC
Q psy12206 101 NSTSED 106 (164)
Q Consensus 101 G~~v~~ 106 (164)
...+++
T Consensus 573 ~r~l~g 578 (655)
T PRK08211 573 RRTLEG 578 (655)
T ss_pred CCEEee
Confidence 555544
No 127
>PRK03760 hypothetical protein; Provisional
Probab=21.09 E-value=73 Score=22.33 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=18.2
Q ss_pred CeEEEEECCCChhhhcCCCCCCCEEE
Q psy12206 132 GIYVTKIMDGGAAQVDGRLQVGDKLI 157 (164)
Q Consensus 132 gv~I~~v~~gs~A~~~G~L~~GD~Il 157 (164)
..+|-.+ +.|.+++.| +++||+|.
T Consensus 90 a~~VLEl-~aG~~~~~g-i~~Gd~v~ 113 (117)
T PRK03760 90 ARYIIEG-PVGKIRVLK-VEVGDEIE 113 (117)
T ss_pred ceEEEEe-CCChHHHcC-CCCCCEEE
Confidence 4567777 556677788 99999985
No 128
>KOG0792|consensus
Probab=21.04 E-value=49 Score=31.94 Aligned_cols=60 Identities=18% Similarity=0.374 Sum_probs=41.4
Q ss_pred EEcCC-CCcCEEEecCCCCCCCCCCCcEEEEEeC-------------CCChhhh-cCCCCCCCEEEEECCeeccC
Q psy12206 47 LVKGN-KGLGFSIAGGIGNQHIPGDNGIYVTKIM-------------DGGAAQV-DGRLQVGDKLIAVRNSTSED 106 (164)
Q Consensus 47 L~k~~-~glGf~i~gg~~~~~~~~~~gv~V~~V~-------------~gs~A~~-~G~L~~GD~Il~VNG~~v~~ 106 (164)
|..++ +.+||-+.|+.+-..-.-..+..++.+. |+++|+. .-++..||+++.|||.++..
T Consensus 710 ~~~~~~g~~g~~~~g~~dq~~~~~~~p~a~sRv~~~~p~~~~~~~~~p~s~~d~~~P~~~e~dq~~~ingr~~~~ 784 (1144)
T KOG0792|consen 710 LAEDPPGRFGFNLKGGLDQLQNLLNEPVAVSRVAGPGPLKMNGKLSEPESTADDCTPRLNEGDQVTSINGRDVSE 784 (1144)
T ss_pred cccCCCccccccccchhhhhhccccccHHHHhhcccccchhcccccCCCCCccccccCCCcccceeeeccccccc
Confidence 44444 4599999998754211112566777787 7777754 33577899999999999887
No 129
>COG4841 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.92 E-value=59 Score=21.94 Aligned_cols=18 Identities=22% Similarity=0.285 Sum_probs=13.6
Q ss_pred hhhccCceeeEEEeeccc
Q psy12206 17 IALNVGISKFMYVRRKKV 34 (164)
Q Consensus 17 ~~~~~~~~~~~~v~~~~~ 34 (164)
.-+..|+.+|++||+--.
T Consensus 17 ~~l~~g~~vrffvRyGG~ 34 (95)
T COG4841 17 LDLEEGNKVRFFVRYGGC 34 (95)
T ss_pred cCCCCCCEEEEEEEEcCc
Confidence 456778889998888653
No 130
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=20.50 E-value=84 Score=27.12 Aligned_cols=32 Identities=28% Similarity=0.418 Sum_probs=27.9
Q ss_pred EEEEeCCCChhhhcCCCCCCCEEEEEC-CeeccC
Q psy12206 74 YVTKIMDGGAAQVDGRLQVGDKLIAVR-NSTSED 106 (164)
Q Consensus 74 ~V~~V~~gs~A~~~G~L~~GD~Il~VN-G~~v~~ 106 (164)
.|..+.+++.++.+| +.++|.+..|| +..+..
T Consensus 4 ~i~~v~~~~~~d~~G-fe~~~~l~~Vn~~~~~~~ 36 (414)
T COG1625 4 KISKVGGISGADCDG-FEEGDYLLKVNPGFGCKD 36 (414)
T ss_pred ceeeccCCCcccccC-ccccceeeecCCCCCCCc
Confidence 466799999999999 99999999999 766665
Done!