RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12206
(164 letters)
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90,
GLUR6, cell juncti membrane, lipoprotein, membrane,
palmitate, phosphoprotein; 2.05A {Rattus norvegicus}
PDB: 3zrt_A 2ka9_A
Length = 196
Score = 121 bits (305), Expect = 2e-35
Identities = 72/159 (45%), Positives = 91/159 (57%), Gaps = 35/159 (22%)
Query: 38 GNMKILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLI 97
G+M+ +I L +GN GLGFSIAGG N HI D I++TKI+ GGAA DGRL+V D ++
Sbjct: 2 GSMEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSIL 61
Query: 98 AV-----RNSTSED-----KRASPGIFL-------------------------CNIAGGI 122
V R T K A + L +IAGG+
Sbjct: 62 FVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIAGGV 121
Query: 123 GNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRN 161
GNQHIPGDN IYVTKI++GGAA DGRLQ+GDK++AV +
Sbjct: 122 GNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNS 160
Score = 77.9 bits (192), Expect = 1e-18
Identities = 50/78 (64%), Positives = 63/78 (80%), Gaps = 4/78 (5%)
Query: 27 MYVRRKKVTRQGNMKILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQV 86
+YV R+K K+++I+L+KG KGLGFSIAGG+GNQHIPGDN IYVTKI++GGAA
Sbjct: 89 LYVMRRKPP---AEKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHK 145
Query: 87 DGRLQVGDKLIAVRNSTS 104
DGRLQ+GDK++AV NS
Sbjct: 146 DGRLQIGDKILAV-NSVG 162
>2xkx_A Disks large homolog 4; structural protein, scaffold protein,
membrane associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 108 bits (270), Expect = 3e-28
Identities = 72/160 (45%), Positives = 91/160 (56%), Gaps = 35/160 (21%)
Query: 37 QGNMKILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKL 96
+G M+ +I L +GN GLGFSIAGG N HI D I++TKI+ GGAA DGRL+V D +
Sbjct: 55 EGEMEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSI 114
Query: 97 IAV-----RNSTSED-----KRASPGIFLC-------------------------NIAGG 121
+ V R T K A + L +IAGG
Sbjct: 115 LFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIAGG 174
Query: 122 IGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRN 161
+GNQHIPGDN IYVTKI++GGAA DGRLQ+GDK++AV +
Sbjct: 175 VGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNS 214
Score = 63.8 bits (154), Expect = 1e-12
Identities = 50/85 (58%), Positives = 64/85 (75%), Gaps = 3/85 (3%)
Query: 27 MYVRRKKVTRQGNMKILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQV 86
+YV R+K K+++I+L+KG KGLGFSIAGG+GNQHIPGDN IYVTKI++GGAA
Sbjct: 143 LYVMRRKPP---AEKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHK 199
Query: 87 DGRLQVGDKLIAVRNSTSEDKRASP 111
DGRLQ+GDK++AV + ED
Sbjct: 200 DGRLQIGDKILAVNSVGLEDVMHED 224
Score = 60.3 bits (145), Expect = 2e-11
Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 11/67 (16%)
Query: 45 IELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV----- 99
I + +G+ GLGF+I GG + GI+++ I+ GG A + G L+ GD++++V
Sbjct: 311 IVIHRGSTGLGFNIVGGEDGE------GIFISFILAGGPADLSGELRKGDQILSVNGVDL 364
Query: 100 RNSTSED 106
RN++ E
Sbjct: 365 RNASHEQ 371
Score = 43.0 bits (100), Expect = 2e-05
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 9/61 (14%)
Query: 99 VRNSTSEDKRASPGIFLCNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIA 158
R G NI GG + GI+++ I+ GG A + G L+ GD++++
Sbjct: 308 PRRIVIHRGSTGLGF---NIVGGEDGE------GIFISFILAGGPADLSGELRKGDQILS 358
Query: 159 V 159
V
Sbjct: 359 V 359
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein
complex, PDZ domain, peptide binding protein; 2.60A
{Drosophila melanogaster}
Length = 206
Score = 102 bits (256), Expect = 4e-28
Identities = 25/150 (16%), Positives = 43/150 (28%), Gaps = 34/150 (22%)
Query: 41 KILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV- 99
K + IEL K +G + GG N G +T + G D RL++ D + +
Sbjct: 18 KKILIELKVEKKPMGVIVCGGKNN---HVTTGCVITHVYPEGQVAADKRLKIFDHICDIN 74
Query: 100 ---------------------RNSTSEDKRASPGIFLCNI---------AGGIGNQHIPG 129
+G P
Sbjct: 75 GTPIHVGSMTTLKVHQLFHTTYEKAVTLTVFRADPPELEKFNVDLMKKAGKELGLSLSPN 134
Query: 130 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+ G + ++ G ++D +LQ GD +
Sbjct: 135 EIGCTIADLIQGQYPEIDSKLQRGDIITKF 164
Score = 57.6 bits (139), Expect = 5e-11
Identities = 18/107 (16%), Positives = 41/107 (38%), Gaps = 12/107 (11%)
Query: 1 MKIDVISYYCQTCLKVIALNVGISKFMYVRRKKVTRQ--GNMKILDIELVK-GNKGLGFS 57
I+ + + + + + + V R ++ +++L+K K LG S
Sbjct: 71 CDINGTPIHVGSMTTLKVHQLFHTTYEKAVTLTVFRADPPELEKFNVDLMKKAGKELGLS 130
Query: 58 IAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTS 104
+ P + G + ++ G ++D +LQ GD + N +
Sbjct: 131 L--------SPNEIGCTIADLIQGQYPEIDSKLQRGDIITKF-NGDA 168
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain,
structural genomics, structural genom consortium, SGC,
phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 99.4 bits (248), Expect = 7e-28
Identities = 48/65 (73%), Positives = 57/65 (87%), Gaps = 1/65 (1%)
Query: 40 MKILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
M +++I+L KG KGLGFSIAGG+GNQHIPGDN IYVTKI+DGGAAQ DGRLQVGD+L+ V
Sbjct: 23 MTVVEIKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMV 82
Query: 100 RNSTS 104
N+ S
Sbjct: 83 -NNYS 86
Score = 73.6 bits (181), Expect = 9e-18
Identities = 35/43 (81%), Positives = 40/43 (93%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+IAGG+GNQHIPGDN IYVTKI+DGGAAQ DGRLQVGD+L+ V
Sbjct: 40 SIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMV 82
>2awx_A Synapse associated protein 97; membrane protein, synaptic
signaling, trafficking protein; HET: HIS; 1.80A {Rattus
norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Length = 105
Score = 96.6 bits (241), Expect = 6e-27
Identities = 45/59 (76%), Positives = 55/59 (93%)
Query: 41 KILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
KI++I+L+KG KGLGFSIAGG+GNQHIPGDN IYVTKI++GGAA DG+LQ+GDKL+AV
Sbjct: 3 KIMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAV 61
Score = 70.8 bits (174), Expect = 7e-17
Identities = 33/43 (76%), Positives = 40/43 (93%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+IAGG+GNQHIPGDN IYVTKI++GGAA DG+LQ+GDKL+AV
Sbjct: 19 SIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAV 61
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural
genomics, structural GEN consortium, SGC, structural
protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1
PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Length = 94
Score = 95.4 bits (238), Expect = 1e-26
Identities = 47/65 (72%), Positives = 59/65 (90%), Gaps = 1/65 (1%)
Query: 40 MKILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
M I+++ L+KG KGLGFSIAGGIGNQHIPGDN IY+TKI++GGAAQ DGRLQ+GD+L+AV
Sbjct: 2 MTIMEVNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAV 61
Query: 100 RNSTS 104
N+T+
Sbjct: 62 -NNTN 65
Score = 69.2 bits (170), Expect = 2e-16
Identities = 34/43 (79%), Positives = 41/43 (95%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+IAGGIGNQHIPGDN IY+TKI++GGAAQ DGRLQ+GD+L+AV
Sbjct: 19 SIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAV 61
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane,
mitochondria distribution, PDZ, membrane, scaffold,
mitochondrion, membrane protein; 1.35A {Homo sapiens}
PDB: 2jin_A
Length = 101
Score = 91.6 bits (228), Expect = 4e-25
Identities = 29/65 (44%), Positives = 44/65 (67%)
Query: 35 TRQGNMKILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGD 94
+ + +I L +G GLGF+I GG Q++ D+GIYV++I + GAA +DGRLQ GD
Sbjct: 1 SMDYLVTEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGD 60
Query: 95 KLIAV 99
K+++V
Sbjct: 61 KILSV 65
Score = 66.2 bits (162), Expect = 4e-15
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
NI GG Q++ D+GIYV++I + GAA +DGRLQ GDK+++V
Sbjct: 23 NIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSV 65
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti
density, glutametergic receptors, carbohydrate
metabolism, cycle, cell division; HET: MES; 1.85A
{Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Length = 170
Score = 93.1 bits (231), Expect = 9e-25
Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 36 RQGNMKILDIELVKGNKGLGFSIAGGI-GNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGD 94
R +++ +EL K ++GLG SI G G GI+V + +GGAA DGR+QV D
Sbjct: 75 RVERLELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVND 134
Query: 95 KLIAVRNSTS 104
L+ V + TS
Sbjct: 135 LLVEV-DGTS 143
Score = 65.4 bits (159), Expect = 3e-14
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 117 NIAGGI-GNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+I G G GI+V + +GGAA DGR+QV D L+ V
Sbjct: 96 SIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEV 139
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane
protein 25, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 120
Score = 91.0 bits (226), Expect = 2e-24
Identities = 29/65 (44%), Positives = 43/65 (66%)
Query: 35 TRQGNMKILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGD 94
+ +I L +G GLGF+I GG Q++ D+GIYV++I + GAA +DGRLQ GD
Sbjct: 11 RVDYLVTEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGD 70
Query: 95 KLIAV 99
K+++V
Sbjct: 71 KILSV 75
Score = 67.1 bits (164), Expect = 3e-15
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
NI GG Q++ D+GIYV++I + GAA +DGRLQ GDK+++V
Sbjct: 33 NIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSV 75
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ
tandem, alternative splicing, cell junction, cytoplasm;
2.30A {Rattus norvegicus}
Length = 200
Score = 92.9 bits (231), Expect = 2e-24
Identities = 33/159 (20%), Positives = 55/159 (34%), Gaps = 50/159 (31%)
Query: 45 IELVK-GNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV---- 99
+EL+K LG +++GGI D V+ + GG A +L VGD + AV
Sbjct: 11 VELMKKEGTTLGLTVSGGIDK-----DGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGIN 65
Query: 100 -RNSTSED-----KRASPGIFL---------------------------------CNIAG 120
++ K + L I G
Sbjct: 66 LAKFRHDEIISLLKNVGERVVLEVEYELPPVSIQGSSVMFRTVEVTLHKEGNTFGFVIRG 125
Query: 121 GIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
G + + +T + GG A +G ++ GD+L++V
Sbjct: 126 GAHDDR-NKSRPVVITCVRPGGPADREGTIKPGDRLLSV 163
Score = 74.8 bits (184), Expect = 2e-17
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 39 NMKILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIA 98
+ +++ L K GF I GG + + +T + GG A +G ++ GD+L++
Sbjct: 104 MFRTVEVTLHKEGNTFGFVIRGGAHDDR-NKSRPVVITCVRPGGPADREGTIKPGDRLLS 162
Query: 99 VRNSTS 104
V +
Sbjct: 163 V-DGIR 167
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal
transduction, structural genom structural genomics
consortium, SGC, signaling protein; 1.85A {Homo
sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A
1iu0_A 1iu2_A
Length = 102
Score = 88.9 bits (221), Expect = 5e-24
Identities = 35/59 (59%), Positives = 44/59 (74%)
Query: 41 KILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
K +I L +GN GLGFSIAGGI N H+P D GI++TKI+ GGAA +DGRL V D ++ V
Sbjct: 4 KYEEIVLERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRV 62
Score = 65.8 bits (161), Expect = 6e-15
Identities = 25/43 (58%), Positives = 33/43 (76%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+IAGGI N H+P D GI++TKI+ GGAA +DGRL V D ++ V
Sbjct: 20 SIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRV 62
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission,
protein binding; NMR {Rattus norvegicus}
Length = 113
Score = 89.0 bits (221), Expect = 8e-24
Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 38 GNMKILDIELVKGNKGLGFSIAGGI-GNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKL 96
G+M++ +EL K ++GLG SI G G GI+V + +GGAA DGR+QV D L
Sbjct: 1 GHMELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLL 60
Query: 97 IAV 99
+ V
Sbjct: 61 VEV 63
Score = 60.1 bits (146), Expect = 9e-13
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 117 NIAGGI-GNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+I G G GI+V + +GGAA DGR+QV D L+ V
Sbjct: 20 SIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEV 63
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem
repeats, scaffold protein, protein binding; NMR {Rattus
norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Length = 196
Score = 90.6 bits (225), Expect = 1e-23
Identities = 27/162 (16%), Positives = 55/162 (33%), Gaps = 47/162 (29%)
Query: 41 KILDIELVKG-NKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
+ ++ L G G + G + ++ I A+ G LQ+GD+++A+
Sbjct: 6 ETTEVVLTADPVTGFGIQLQGSVFATETLSS-PPLISYIEADSPAERCGVLQIGDRVMAI 64
Query: 100 -----RNSTSED-----KRASPGIFL--------------------------------CN 117
+ST E+ + +S +
Sbjct: 65 NGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVIPSSGTFHVKLPKKHSVELGIT 124
Query: 118 IAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
I+ + + + ++ I G A G L++GDKL+A+
Sbjct: 125 ISSPSSRKP---GDPLVISDIKKGSVAHRTGTLELGDKLLAI 163
Score = 62.1 bits (151), Expect = 1e-12
Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 39 NMKILDIELVK-GNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLI 97
+ ++L K + LG +I+ + + + ++ I G A G L++GDKL+
Sbjct: 105 SSGTFHVKLPKKHSVELGITISSPSSRKP---GDPLVISDIKKGSVAHRTGTLELGDKLL 161
Query: 98 AVRNSTS 104
A+ ++
Sbjct: 162 AI-DNIR 167
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI,
structural genomics, alternative splicing, cell cycle,
cell division, cell junction; NMR {Homo sapiens}
Length = 121
Score = 87.1 bits (216), Expect = 5e-23
Identities = 31/64 (48%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 41 KILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVR 100
K L+I+L KG +GLGFSI + I G IYV I+ GAA DGRL+ GD+LI V
Sbjct: 30 KRLNIQLKKGTEGLGFSITSR--DVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEV- 86
Query: 101 NSTS 104
N
Sbjct: 87 NGVD 90
Score = 61.3 bits (149), Expect = 5e-13
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+I + I G IYV I+ GAA DGRL+ GD+LI V
Sbjct: 46 SITSR--DVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEV 86
>2fne_A Multiple PDZ domain protein; structural protein, structural
genomics, SGC, structural genomics consortium, unknown
function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 87.0 bits (216), Expect = 5e-23
Identities = 32/64 (50%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 41 KILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVR 100
+ I L +G GLGFSI GG G+ H GD IYV + GAA DGRL+ GD++IAV
Sbjct: 25 QCKSITLERGPDGLGFSIVGGYGSPH--GDLPIYVKTVFAKGAASEDGRLKRGDQIIAV- 81
Query: 101 NSTS 104
N S
Sbjct: 82 NGQS 85
Score = 62.4 bits (152), Expect = 2e-13
Identities = 22/43 (51%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+I GG G+ H GD IYV + GAA DGRL+ GD++IAV
Sbjct: 41 SIVGGYGSPH--GDLPIYVKTVFAKGAASEDGRLKRGDQIIAV 81
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1,
HOST-virus interaction, structural genomics consortium,
synaptosome, tight junction; 1.35A {Homo sapiens}
Length = 97
Score = 85.8 bits (213), Expect = 7e-23
Identities = 26/59 (44%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 41 KILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
+ D+EL K +GLG +IAG IG++ + +GI+V I A + DGR+Q+GD++IAV
Sbjct: 4 ETFDVELTKNVQGLGITIAGYIGDKKL-EPSGIFVKSITKSSAVEHDGRIQIGDQIIAV 61
Score = 61.9 bits (151), Expect = 2e-13
Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
IAG IG++ + +GI+V I A + DGR+Q+GD++IAV
Sbjct: 20 TIAGYIGDKKL-EPSGIFVKSITKSSAVEHDGRIQIGDQIIAV 61
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR
{Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A
1vj6_A 1gm1_A 1ozi_A
Length = 96
Score = 85.3 bits (212), Expect = 1e-22
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 41 KILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
I ++EL K + LG S+ GG+ GIYV ++ GAA+ DGR+ GD+++AV
Sbjct: 5 DIFEVELAKNDNSLGISVTGGVNTSV--RHGGIYVKAVIPQGAAESDGRIHKGDRVLAV 61
Score = 61.1 bits (149), Expect = 3e-13
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
++ GG+ GIYV ++ GAA+ DGR+ GD+++AV
Sbjct: 21 SVTGGVNTSV--RHGGIYVKAVIPQGAAESDGRIHKGDRVLAV 61
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 85.5 bits (212), Expect = 1e-22
Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 40 MKILDIELVKGNKGLGFSIAGG-IGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIA 98
+++ +EL K GLG SI G +G GI+V + +GGAAQ DGR+QV D+++
Sbjct: 8 LELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVE 67
Query: 99 V 99
V
Sbjct: 68 V 68
Score = 60.8 bits (148), Expect = 4e-13
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 117 NIAGG-IGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+I G +G GI+V + +GGAAQ DGR+QV D+++ V
Sbjct: 25 SIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEV 68
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural
genomics, alternative splicing, cell cycle, cell
division, cell junction, coiled coil; NMR {Mus
musculus} PDB: 2ogp_A
Length = 111
Score = 85.8 bits (213), Expect = 1e-22
Identities = 30/59 (50%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 41 KILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
K L+I+L KG +GLGFSI + I G IYV I+ GAA DGRL+ GD+LI V
Sbjct: 11 KRLNIQLKKGTEGLGFSITSR--DVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEV 67
Score = 59.6 bits (145), Expect = 1e-12
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+I + I G IYV I+ GAA DGRL+ GD+LI V
Sbjct: 27 SITSR--DVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEV 67
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 129
Score = 85.9 bits (213), Expect = 2e-22
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 42 ILDIELVK-GNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVR 100
++ELV+ + LG I G +G H +GIYV ++ G AA +G +QV DK++AV
Sbjct: 16 TYNVELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAV- 74
Query: 101 NSTS 104
+ +
Sbjct: 75 DGVN 78
Score = 68.2 bits (167), Expect = 1e-15
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
I G +G H +GIYV ++ G AA +G +QV DK++AV
Sbjct: 32 RIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAV 74
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.36.1.1
Length = 105
Score = 85.5 bits (212), Expect = 2e-22
Identities = 28/64 (43%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 37 QGNMKILDIELVKGNKGLGFSIAGGIGNQ-HIPGDNGIYVTKIMDGGAAQVDGRLQVGDK 95
G+ L + +GLGFSIAGG G+ + GD GI+V++I +GGAA G LQVGD+
Sbjct: 3 SGSSGRHVACLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDR 62
Query: 96 LIAV 99
++++
Sbjct: 63 VLSI 66
Score = 62.7 bits (153), Expect = 8e-14
Identities = 21/44 (47%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Query: 117 NIAGGIGNQ-HIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+IAGG G+ + GD GI+V++I +GGAA G LQVGD+++++
Sbjct: 23 SIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSI 66
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor,
PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Length = 130
Score = 84.5 bits (209), Expect = 7e-22
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 39 NMKILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIA 98
+ + L K + GLGFS+ GG G+ H GD + + +I G A++ +Q GD+++
Sbjct: 27 EATVCTVTLEKMSAGLGFSLEGGKGSLH--GDKPLTINRIFKGAASEQSETVQPGDEILQ 84
Query: 99 VRNSTS 104
+ T+
Sbjct: 85 L-GGTA 89
Score = 59.1 bits (143), Expect = 4e-12
Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
++ GG G+ H GD + + +I G A++ +Q GD+++ +
Sbjct: 45 SLEGGKGSLH--GDKPLTINRIFKGAASEQSETVQPGDEILQL 85
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Length = 108
Score = 83.6 bits (207), Expect = 9e-22
Identities = 19/61 (31%), Positives = 32/61 (52%)
Query: 39 NMKILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIA 98
++ +++ K LG SI+G GIYV ++ G AA +DGR++ DK++
Sbjct: 12 SLYSVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILR 71
Query: 99 V 99
V
Sbjct: 72 V 72
Score = 63.9 bits (156), Expect = 3e-14
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+I+G GIYV ++ G AA +DGR++ DK++ V
Sbjct: 30 SISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRV 72
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 108
Score = 82.4 bits (204), Expect = 2e-21
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 41 KILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVR 100
++ +ELVK KGLGFSI + P + I + ++ G A+ G L GD+L++V
Sbjct: 15 EVKIVELVKDCKGLGFSILDY-QDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSV- 72
Query: 101 NSTS 104
N
Sbjct: 73 NEYC 76
Score = 58.2 bits (141), Expect = 4e-12
Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+I + P + I + ++ G A+ G L GD+L++V
Sbjct: 31 SILDY-QDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSV 72
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1;
endoplasmic reticulum, postsynaptic membrane, membrane,
MEMB protein; 1.5A {Homo sapiens}
Length = 97
Score = 81.9 bits (203), Expect = 3e-21
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 39 NMKILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIA 98
+M+ +++ L K GF I GG + + +T + GG A +G ++ GD+L++
Sbjct: 1 SMRTVEVTLHKEGNTFGFVIRGGAHDDR-NKSRPVVITSVRPGGPADREGTIKPGDRLLS 59
Query: 99 V 99
V
Sbjct: 60 V 60
Score = 55.7 bits (135), Expect = 3e-11
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
I GG + + +T + GG A +G ++ GD+L++V
Sbjct: 19 VIRGGAHDDR-NKSRPVVITSVRPGGPADREGTIKPGDRLLSV 60
>2o2t_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 2.70A
{Homo sapiens}
Length = 117
Score = 81.7 bits (202), Expect = 6e-21
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 40 MKILDIELVKG-NKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIA 98
+ EL+K + GLGFS+ G G+ GI+V +I +G A DGRL+ D+++A
Sbjct: 19 RHVEVFELLKPPSGGLGFSVVGLRSENR--GELGIFVQEIQEGSVAHRDGRLKETDQILA 76
Query: 99 VRNSTS 104
+ N +
Sbjct: 77 I-NGQA 81
Score = 62.4 bits (152), Expect = 2e-13
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
++ G G+ GI+V +I +G A DGRL+ D+++A+
Sbjct: 37 SVVGLRSENR--GELGIFVQEIQEGSVAHRDGRLKETDQILAI 77
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA,
structural genomics, riken structural
genomics/proteomics initiative, unknown function; NMR
{Homo sapiens} SCOP: b.36.1.1
Length = 110
Score = 80.8 bits (200), Expect = 8e-21
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 41 KILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
+ +EL +G GLG + G+ G G+Y+ ++ G A DGRL +GD+++ V
Sbjct: 8 YVFTVELERGPSGLGMGLIDGMHTHL--GAPGLYIQTLLPGSPAAADGRLSLGDRILEV 64
Score = 57.0 bits (138), Expect = 1e-11
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+ G+ G G+Y+ ++ G A DGRL +GD+++ V
Sbjct: 24 GLIDGMHTHL--GAPGLYIQTLLPGSPAAADGRLSLGDRILEV 64
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural
proteomics in europe, spine, structural genomics,
hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 108
Score = 80.5 bits (199), Expect = 1e-20
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 41 KILDIELVKGNKGLGFSIAGGI---GNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLI 97
I ++EL K + LG S+ G GIYV ++ GAA+ DGR+ GD+++
Sbjct: 9 DIFEVELAKNDNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVL 68
Query: 98 AV 99
AV
Sbjct: 69 AV 70
Score = 56.2 bits (136), Expect = 3e-11
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 117 NIAGGI---GNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
++ G GIYV ++ GAA+ DGR+ GD+++AV
Sbjct: 25 SVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAV 70
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic
domain associated protein, structural genomics; NMR
{Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 79.7 bits (197), Expect = 2e-20
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 39 NMKILDIELVKGNKGLGFSIAGGIG---NQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDK 95
+ K L + L + + LGF+I GG N GI+V+KI+D G A +G LQ+ D+
Sbjct: 6 SGKSLTLVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDR 65
Query: 96 LIAV 99
+I V
Sbjct: 66 IIEV 69
Score = 56.6 bits (137), Expect = 2e-11
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 117 NIAGGIG---NQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
NI GG N GI+V+KI+D G A +G LQ+ D++I V
Sbjct: 24 NIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEV 69
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 111
Score = 79.0 bits (195), Expect = 5e-20
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 42 ILDIELVKG-NKGLGFSIAGGI----GNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKL 96
+ ++ + K + LG SI GG GN P D GI+++K+ GAA DGRL+VG +L
Sbjct: 10 LRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRL 69
Query: 97 IAV 99
+ V
Sbjct: 70 LEV 72
Score = 61.6 bits (150), Expect = 2e-13
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Query: 117 NIAGGI----GNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+I GG GN P D GI+++K+ GAA DGRL+VG +L+ V
Sbjct: 26 SIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEV 72
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 78.5 bits (194), Expect = 6e-20
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 41 KILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
+ELV+G G G ++ GG + + GD + V ++ G AQ GRL+VGD ++ +
Sbjct: 11 GHFSVELVRGYAGFGLTLGGG---RDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHI 66
Score = 55.4 bits (134), Expect = 5e-11
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+ GG + + GD + V ++ G AQ GRL+VGD ++ +
Sbjct: 27 TLGGG---RDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHI 66
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing
protein 1; PDZ domain, ATP-binding, cell junction, cell
membrane; NMR {Homo sapiens} PDB: 2kpl_A
Length = 129
Score = 78.7 bits (194), Expect = 1e-19
Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 35 TRQGNMKILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGD 94
+ K + +L K ++G GF++ GG D + + ++ G A +DG+++ GD
Sbjct: 12 PSELKGKFIHTKLRKSSRGFGFTVVGGD-----EPDEFLQIKSLVLDGPAALDGKMETGD 66
Query: 95 KLIAV 99
+++V
Sbjct: 67 VIVSV 71
Score = 51.7 bits (124), Expect = 2e-09
Identities = 10/43 (23%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+ GG D + + ++ G A +DG+++ GD +++V
Sbjct: 34 TVVGGD-----EPDEFLQIKSLVLDGPAALDGKMETGDVIVSV 71
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.7A {Homo sapiens} PDB:
2iwp_A
Length = 120
Score = 78.2 bits (193), Expect = 1e-19
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 39 NMKILDIELVKG-NKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLI 97
+M + +E+ KG LG SIAGG+G+ GD I++ + G A +L+VGD+++
Sbjct: 22 SMGLRTVEMKKGPTDSLGISIAGGVGSPL--GDVPIFIAMMHPTGVAAQTQKLRVGDRIV 79
Query: 98 AVRNSTS 104
+ TS
Sbjct: 80 TI-CGTS 85
Score = 59.3 bits (144), Expect = 3e-12
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+IAGG+G+ GD I++ + G A +L+VGD+++ +
Sbjct: 41 SIAGGVGSPL--GDVPIFIAMMHPTGVAAQTQKLRVGDRIVTI 81
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated
to tight junctions, PATJ; NMR {Homo sapiens}
Length = 116
Score = 77.8 bits (192), Expect = 1e-19
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 41 KILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
+ + IE+ KG GLG SI GG N I + ++ + GAA DGRL GD+++ V
Sbjct: 17 QEMIIEISKGRSGLGLSIVGGKDTPL----NAIVIHEVYEEGAAARDGRLWAGDQILEV 71
Score = 53.9 bits (130), Expect = 3e-10
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+I GG N I + ++ + GAA DGRL GD+++ V
Sbjct: 33 SIVGGKDTPL----NAIVIHEVYEEGAAARDGRLWAGDQILEV 71
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL
conjugation, leucine-rich repeat, alternative splicing,
cytoplasm, circletail, coiled coil; 1.30A {Homo
sapiens}
Length = 97
Score = 76.9 bits (190), Expect = 2e-19
Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 40 MKILDIELVKGNKGLGFSIAGGIGNQH-IPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIA 98
M+ L + +++ GLG SIAGG G+ D GI+++++ + G A G ++VGDKL+
Sbjct: 2 MEELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLE 60
Query: 99 V 99
V
Sbjct: 61 V 61
Score = 53.4 bits (129), Expect = 3e-10
Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 117 NIAGGIGNQH-IPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+IAGG G+ D GI+++++ + G A G ++VGDKL+ V
Sbjct: 19 SIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEV 61
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein,
STXBP4 protein, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: b.36.1.1
Length = 109
Score = 76.7 bits (189), Expect = 4e-19
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 40 MKILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
+ V GLG I GGI +Y+ +++ GG DGRL+ GD+L+++
Sbjct: 13 DPAFRVITVTKETGLGLKILGGINRNE---GPLVYIHEVIPGGDCYKDGRLKPGDQLVSI 69
Score = 56.3 bits (136), Expect = 3e-11
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
I GGI +Y+ +++ GG DGRL+ GD+L+++
Sbjct: 30 KILGGINRNE---GPLVYIHEVIPGGDCYKDGRLKPGDQLVSI 69
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural
genomics, PDZ domain, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A
Length = 127
Score = 76.8 bits (189), Expect = 5e-19
Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 42 ILDIELVK-GNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
L+I L G+ GLG S+ G + D GI++ I+ GGAA DGRL++ D+LIAV
Sbjct: 26 TLEIPLNDSGSAGLGVSLKGNKSRET-GTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAV 83
Score = 60.2 bits (146), Expect = 2e-12
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
++ G + D GI++ I+ GGAA DGRL++ D+LIAV
Sbjct: 42 SLKGNKSRET-GTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAV 83
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated
to tight junctions, PATJ; NMR {Homo sapiens}
Length = 124
Score = 76.7 bits (189), Expect = 6e-19
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 41 KILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
++ IEL K GLG S+AG + I+V I G A DGR+++GD+L+ +
Sbjct: 25 ELHIIELEKDKNGLGLSLAGNKDRSRM----SIFVVGINPEGPAAADGRMRIGDELLEI 79
Score = 53.6 bits (129), Expect = 4e-10
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
++AG + I+V I G A DGR+++GD+L+ +
Sbjct: 41 SLAGNKDRSRM----SIFVVGINPEGPAAADGRMRIGDELLEI 79
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 75.8 bits (187), Expect = 7e-19
Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 41 KILDIELVKGNKGLGFSIAGGIGNQH-IPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
+ L + +++ GLG SIAGG G+ D GI+++++ + G A G ++VGDKL+ V
Sbjct: 15 EELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEV 73
Score = 53.9 bits (130), Expect = 2e-10
Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 117 NIAGGIGNQH-IPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+IAGG G+ D GI+++++ + G A G ++VGDKL+ V
Sbjct: 31 SIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEV 73
>2opg_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 1.50A
{Homo sapiens}
Length = 98
Score = 75.4 bits (186), Expect = 8e-19
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 41 KILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
IE+ KG GLG SI GG I + ++ + GAA DGRL GD+++ V
Sbjct: 4 CETTIEISKGRTGLGLSIVGGSDTLLGA----IIIHEVYEEGAACKDGRLWAGDQILEV 58
Score = 51.9 bits (125), Expect = 1e-09
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+I GG I + ++ + GAA DGRL GD+++ V
Sbjct: 20 SIVGGSDTLLGA----IIIHEVYEEGAACKDGRLWAGDQILEV 58
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain,
structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 123
Score = 76.3 bits (188), Expect = 9e-19
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 36 RQGNMKILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDK 95
Q L L K N G GF+I GG D + V ++ G A DG+++ GD
Sbjct: 14 SQLKGTFLSTTLKKSNMGFGFTIIGGD-----EPDEFLQVKSVIPDGPAAQDGKMETGDV 68
Query: 96 LIAV 99
++ +
Sbjct: 69 IVYI 72
Score = 50.9 bits (122), Expect = 4e-09
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
I GG D + V ++ G A DG+++ GD ++ +
Sbjct: 35 TIIGGD-----EPDEFLQVKSVIPDGPAAQDGKMETGDVIVYI 72
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell
adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A*
1t2m_A 2ain_A
Length = 106
Score = 75.8 bits (187), Expect = 9e-19
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 35 TRQGNMKILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGD 94
+ +I+ + L K N G+G SI G GIYV ++ GGAA VDGRL GD
Sbjct: 5 SDHKEPEIITVTLKKQN-GMGLSIVAAKGAGQ--DKLGIYVKSVVKGGAADVDGRLAAGD 61
Query: 95 KLIAV 99
+L++V
Sbjct: 62 QLLSV 66
Score = 59.3 bits (144), Expect = 2e-12
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+I G GIYV ++ GGAA VDGRL GD+L++V
Sbjct: 26 SIVAAKGAGQ--DKLGIYVKSVVKGGAADVDGRLAAGDQLLSV 66
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural
genomics, structural genomics consortium, SGC,
metal-binding; 1.75A {Homo sapiens}
Length = 118
Score = 75.9 bits (187), Expect = 9e-19
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 40 MKILDIELVKGN-KGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIA 98
M + + K + LG ++AGG H D IYV + GG DGR++ GD L+
Sbjct: 23 MHEKVVNIQKDPGESLGMTVAGGAS--HREWDLPIYVISVEPGGVISRDGRIKTGDILLN 80
Query: 99 V 99
V
Sbjct: 81 V 81
Score = 59.7 bits (145), Expect = 2e-12
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+AGG H D IYV + GG DGR++ GD L+ V
Sbjct: 41 TVAGGAS--HREWDLPIYVISVEPGGVISRDGRIKTGDILLNV 81
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight
junction protein, protein associated to tight junctions,
PATJ, structural genomics; NMR {Homo sapiens}
Length = 128
Score = 75.9 bits (187), Expect = 1e-18
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 42 ILDIELVKG-NKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVR 100
I I++ + GLGFS+ G I+V + G A D RL+ D+++A+
Sbjct: 26 IEYIDIERPSTGGLGFSVVALRSQNL--GKVDIFVKDVQPGSVADRDQRLKENDQILAI- 82
Query: 101 NSTSEDKRAS 110
N T D+ S
Sbjct: 83 NHTPLDQNIS 92
Score = 57.1 bits (138), Expect = 2e-11
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
++ G I+V + G A D RL+ D+++A+
Sbjct: 42 SVVALRSQNL--GKVDIFVKDVQPGSVADRDQRLKENDQILAI 82
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1
interacting protein 1, activin receptor interacting
protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 75.1 bits (185), Expect = 1e-18
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 39 NMKILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIA 98
+ +++ KG KG GFSI GG + +YV ++ + G A +GR++VGD++I
Sbjct: 9 DFDYFTVDMEKGAKGFGFSIRGGREYKM-----DLYVLRLAEDGPAIRNGRMRVGDQIIE 63
Query: 99 V 99
+
Sbjct: 64 I 64
Score = 51.9 bits (125), Expect = 1e-09
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+I GG + +YV ++ + G A +GR++VGD++I +
Sbjct: 27 SIRGGREYKM-----DLYVLRLAEDGPAIRNGRMRVGDQIIEI 64
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated
to tight junctions, PATJ; NMR {Homo sapiens}
Length = 111
Score = 74.3 bits (183), Expect = 3e-18
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 41 KILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
+ ++EL+ GLGF I GG +G+ V I+ GG A DGRLQ GD ++ +
Sbjct: 15 HVEEVELINDGSGLGFGIVGG-------KTSGVVVRTIVPGGLADRDGRLQTGDHILKI 66
Score = 51.2 bits (123), Expect = 2e-09
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 7/43 (16%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
I GG +G+ V I+ GG A DGRLQ GD ++ +
Sbjct: 31 GIVGG-------KTSGVVVRTIVPGGLADRDGRLQTGDHILKI 66
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing
protein 1; transferase, STRU genomics, structural
genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A
{Homo sapiens}
Length = 112
Score = 74.3 bits (183), Expect = 4e-18
Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 5/60 (8%)
Query: 40 MKILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
M +EL +G KG GFS+ GG + +YV ++ + G A+ G++++GD+++ +
Sbjct: 23 MDFYTVELERGAKGFGFSLRGGREY-----NMDLYVLRLAEDGPAERSGKMRIGDEILEI 77
Score = 51.2 bits (123), Expect = 2e-09
Identities = 9/43 (20%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
++ GG + +YV ++ + G A+ G++++GD+++ +
Sbjct: 40 SLRGGREY-----NMDLYVLRLAEDGPAERSGKMRIGDEILEI 77
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand,
cytoplasm, developmental protein, phosphoprotein, WNT
signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A
3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A*
1mc7_A
Length = 108
Score = 74.0 bits (182), Expect = 4e-18
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 39 NMKILDIELVKGN-KGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLI 97
+M I+ + L LG SI G + GD GIY+ IM GGA DGR++ GD L+
Sbjct: 3 HMNIITVTLNMEKYNFLGISIVGQ---SNERGDGGIYIGSIMKGGAVAADGRIEPGDMLL 59
Query: 98 AV 99
V
Sbjct: 60 QV 61
Score = 56.3 bits (136), Expect = 3e-11
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+I G + GD GIY+ IM GGA DGR++ GD L+ V
Sbjct: 22 SIVGQ---SNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQV 61
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 73.6 bits (181), Expect = 8e-18
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 46 ELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
+ GLG I GG G+ G Y+ KI+ GG+A+ G+L G +++
Sbjct: 24 DHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEW 77
Score = 60.6 bits (147), Expect = 9e-13
Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 82 GAAQVDGRLQVGDKLIAVRNSTSEDKRASPGIFLCNIAGGIGNQHIPGDNGIYVTKIMDG 141
G++ G I + + + + G+ + I GG G+ G Y+ KI+ G
Sbjct: 1 GSSGSSGHYIFPHARIKITRDSKDHTVSGNGLGI-RIVGGKEIPGHSGEIGAYIAKILPG 59
Query: 142 GAAQVDGRLQVGDKLIAV 159
G+A+ G+L G +++
Sbjct: 60 GSAEQTGKLMEGMQVLEW 77
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 117
Score = 73.2 bits (180), Expect = 1e-17
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 40 MKILDIELVKG-NKGLGFSIAGGIGNQHI-PGDNGIYVTKIMDGGAAQVDGRLQVGDKLI 97
+ + L K +G G +++GG N H G+ I ++ ++ GG A DG LQ D+++
Sbjct: 13 WEQYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPA--DGLLQENDRVV 70
Query: 98 AV 99
V
Sbjct: 71 MV 72
Score = 55.5 bits (134), Expect = 6e-11
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 117 NIAGGIGNQHI-PGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
++GG N H G+ I ++ ++ GG A DG LQ D+++ V
Sbjct: 31 AVSGGRDNPHFENGETSIVISDVLPGGPA--DGLLQENDRVVMV 72
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain,
structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 72.0 bits (177), Expect = 2e-17
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 39 NMKILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIA 98
K LD+ L + G GF I GG I + ++ G+A DGRL GD+L+
Sbjct: 7 GYKELDVHLRRMESGFGFRILGGDEP-----GQPILIGAVIAMGSADRDGRLHPGDELVY 61
Query: 99 V 99
V
Sbjct: 62 V 62
Score = 49.2 bits (118), Expect = 1e-08
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
I GG I + ++ G+A DGRL GD+L+ V
Sbjct: 25 RILGGDEP-----GQPILIGAVIAMGSADRDGRLHPGDELVYV 62
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high
affinity ligand, cell adhesio; 1.60A {Homo sapiens}
PDB: 2h2c_A 2h3m_A 2rrm_A
Length = 107
Score = 71.6 bits (176), Expect = 3e-17
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 40 MKILDIELVKG-NKGLGFSIAGGIGNQHI-PGDNGIYVTKIMDGGAAQVDGRLQVGDKLI 97
+ + L + G G +I+GG N H G+ I ++ ++ GG A +G+LQ D++
Sbjct: 6 WEQHTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPA--EGQLQENDRVA 63
Query: 98 AV 99
V
Sbjct: 64 MV 65
Score = 54.7 bits (132), Expect = 9e-11
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 117 NIAGGIGNQHI-PGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
I+GG N H G+ I ++ ++ GG A +G+LQ D++ V
Sbjct: 24 AISGGRDNPHFQSGETSIVISDVLKGGPA--EGQLQENDRVAMV 65
>2i04_A Membrane-associated guanylate kinase, WW and PDZ
domain-containing protein 1; PDZ, E6 binding, tumor
suppressor, peptide binding protein; 2.15A {Mus
musculus}
Length = 85
Score = 70.8 bits (174), Expect = 4e-17
Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Query: 43 LDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
+ +L K ++G GF++ GG D + + ++ G A +DG+++ GD +++V
Sbjct: 2 IHTKLRKSSRGFGFTVVGGDEP-----DEFLQIKSLVLDGPAALDGKMETGDVIVSV 53
Score = 47.6 bits (114), Expect = 3e-08
Identities = 10/43 (23%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+ GG D + + ++ G A +DG+++ GD +++V
Sbjct: 16 TVVGGDEP-----DEFLQIKSLVLDGPAALDGKMETGDVIVSV 53
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding;
1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Length = 97
Score = 70.4 bits (173), Expect = 6e-17
Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 42 ILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
I +EL + LG +I+G + I ++ + GG A+ G + +GD+++A+
Sbjct: 6 IYTVELKRYGGPLGITISGTEEP-----FDPIIISSLTKGGLAERTGAIHIGDRILAI 58
Score = 48.9 bits (117), Expect = 2e-08
Identities = 10/43 (23%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
I+G + I ++ + GG A+ G + +GD+++A+
Sbjct: 21 TISGTEEP-----FDPIIISSLTKGGLAERTGAIHIGDRILAI 58
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 93
Score = 70.4 bits (173), Expect = 8e-17
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 5/59 (8%)
Query: 41 KILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
+EL K ++GLGF+I GG ++ IY+++++ GG A G L+ GD+L++V
Sbjct: 5 SSGVVELPKTDEGLGFNIMGGKEQ-----NSPIYISRVIPGGVADRHGGLKRGDQLLSV 58
Score = 49.9 bits (120), Expect = 5e-09
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 5/43 (11%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
NI GG ++ IY+++++ GG A G L+ GD+L++V
Sbjct: 21 NIMGGKEQ-----NSPIYISRVIPGGVADRHGGLKRGDQLLSV 58
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane,
HOST- interaction, structural genomics consortium,
synaptosome, T junction; 1.80A {Homo sapiens}
Length = 123
Score = 70.9 bits (174), Expect = 9e-17
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 40 MKILDIELVKG-NKGLGFSIAGGIGNQHIPGDN----GIYVTKIMDGGAAQVDGRLQVGD 94
M+ +EL + +K LG SI GG G + GI++ +++ A +G L+ GD
Sbjct: 23 MQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGD 82
Query: 95 KLIAV 99
+++ V
Sbjct: 83 RIVEV 87
Score = 53.6 bits (129), Expect = 3e-10
Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 117 NIAGGIGNQHIPGDN----GIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+I GG G + GI++ +++ A +G L+ GD+++ V
Sbjct: 41 SIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEV 87
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing
protein 1; Cys Ser mutant, S genomics consortium, SGC,
transferase; 2.00A {Homo sapiens}
Length = 90
Score = 70.0 bits (172), Expect = 1e-16
Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 44 DIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
DI L + G GF I GG IY+ I+ GAA DGRL+ GD+LI+V
Sbjct: 5 DIFLWRKETGFGFRILGGNEP-----GEPIYIGHIVPLGAADTDGRLRSGDELISV 55
Score = 48.0 bits (115), Expect = 2e-08
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
I GG IY+ I+ GAA DGRL+ GD+LI+V
Sbjct: 18 RILGGNEP-----GEPIYIGHIVPLGAADTDGRLRSGDELISV 55
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3,
DLG3-human presynaptic protein, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.36.1.1
Length = 113
Score = 70.1 bits (172), Expect = 1e-16
Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 6/59 (10%)
Query: 41 KILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
+ I L KG+ GLGF+I GG + GI+V+ I+ GG A + G L+ GD++++V
Sbjct: 15 EPRKIILHKGSTGLGFNIVGGEDGE------GIFVSFILAGGPADLSGELRRGDRILSV 67
Score = 50.1 bits (120), Expect = 6e-09
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 6/43 (13%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
NI GG + GI+V+ I+ GG A + G L+ GD++++V
Sbjct: 31 NIVGGEDGE------GIFVSFILAGGPADLSGELRRGDRILSV 67
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Length = 118
Score = 69.8 bits (171), Expect = 2e-16
Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 36 RQGNMKILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDK 95
Q K + + +K L ++ GG+ + + V+ + +GGAA+ G + GD+
Sbjct: 12 EQIAGKDVRLLRIKKEGSLDLALEGGVDSP----VGKVVVSAVYEGGAAERHGGVVKGDE 67
Query: 96 LIAVRNSTS 104
++A+ N
Sbjct: 68 IMAI-NGKI 75
Score = 49.8 bits (119), Expect = 1e-08
Identities = 11/43 (25%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+ GG+ + + V+ + +GGAA+ G + GD+++A+
Sbjct: 33 ALEGGVDSP----VGKVVVSAVYEGGAAERHGGVVKGDEIMAI 71
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker,
structural genomics, struc genomics consortium, SGC,
structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 68.9 bits (169), Expect = 3e-16
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 40 MKILDIELVKG-NKGLGFSIAGGIGNQHIP----GDNGIYVTKIMDGGAAQVDGRLQVGD 94
M+ +EL + +K LG SI GG G GI++ +++ A +G L+ GD
Sbjct: 3 MQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGD 62
Query: 95 KLIAV 99
+++ V
Sbjct: 63 RIVEV 67
Score = 52.7 bits (127), Expect = 6e-10
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 117 NIAGGIGNQHIP----GDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+I GG G GI++ +++ A +G L+ GD+++ V
Sbjct: 21 SIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEV 67
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric
oxide synthase, oxidoreductase; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 127
Score = 69.5 bits (170), Expect = 4e-16
Identities = 16/86 (18%), Positives = 36/86 (41%), Gaps = 17/86 (19%)
Query: 41 KILDIELVK-GNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
++ + L K GLGF + + + ++ ++ GGAA+ G +Q GD ++AV
Sbjct: 8 NVISVRLFKRKVGGLGFLVKERVSKP------PVIISDLIRGGAAEQSGLIQAGDIILAV 61
Query: 100 -----RNSTSED-----KRASPGIFL 115
+ + + + + +
Sbjct: 62 NDRPLVDLSYDSALEVLRGIASETHV 87
Score = 50.6 bits (121), Expect = 6e-09
Identities = 10/43 (23%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+ + + ++ ++ GGAA+ G +Q GD ++AV
Sbjct: 25 LVKERVSKP------PVIISDLIRGGAAEQSGLIQAGDIILAV 61
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural
genomics, mouse cDNA, riken structural
genomics/proteomics initiative; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 126
Score = 69.5 bits (170), Expect = 4e-16
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Query: 41 KILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
K++ +L GN GLG + + ++ +++ GAA DG LQ GD LI+V
Sbjct: 27 KVIQTKLTVGNLGLGLVVIQN--------GPYLQISHLINKGAAASDGILQPGDVLISV 77
Score = 51.0 bits (122), Expect = 4e-09
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 119 AGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
G+G I + ++ +++ GAA DG LQ GD LI+V
Sbjct: 37 NLGLGLVVIQNGPYLQISHLINKGAAASDGILQPGDVLISV 77
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling
protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Length = 98
Score = 68.5 bits (168), Expect = 5e-16
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 42 ILDIELVK-GNKGLGFSIAGGIGNQH-IPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
I + L K G K G I G GI++ I+ A + GRL+VGD+++++
Sbjct: 6 IHMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSL 65
Score = 51.9 bits (125), Expect = 9e-10
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 117 NIAGGIGNQH-IPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
I G GI++ I+ A + GRL+VGD+++++
Sbjct: 22 CIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSL 65
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative
splicing, cell junction, cell membrane, lipoprotein,
membrane, palmitate, phosphoprotein; 1.35A {Homo
sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Length = 104
Score = 68.1 bits (167), Expect = 7e-16
Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 6/59 (10%)
Query: 41 KILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
+ I + +G+ GLGF+I GG + GI+++ I+ GG A + G L+ GD++++V
Sbjct: 11 EPRRIVIHRGSTGLGFNIVGGEXGE------GIFISFILAGGPADLSGELRKGDQILSV 63
Score = 48.1 bits (115), Expect = 3e-08
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 6/43 (13%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
NI GG + GI+++ I+ GG A + G L+ GD++++V
Sbjct: 27 NIVGGEXGE------GIFISFILAGGPADLSGELRKGDQILSV 63
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex,
peptide binding protein; 1.54A {Rattus norvegicus}
SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Length = 119
Score = 68.6 bits (168), Expect = 8e-16
Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 6/59 (10%)
Query: 41 KILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
+ I + +G+ GLGF+I GG + GI+++ I+ GG A + G L+ GD++++V
Sbjct: 14 EPRRIVIHRGSTGLGFNIVGGEDGE------GIFISFILAGGPADLSGELRKGDQILSV 66
Score = 48.6 bits (116), Expect = 3e-08
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 6/43 (13%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
NI GG + GI+++ I+ GG A + G L+ GD++++V
Sbjct: 30 NIVGGEDGE------GIFISFILAGGPADLSGELRKGDQILSV 66
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide
binding protein; NMR {Drosophila melanogaster}
Length = 106
Score = 67.4 bits (165), Expect = 1e-15
Identities = 13/73 (17%), Positives = 30/73 (41%), Gaps = 14/73 (19%)
Query: 40 MKILDIELVKGN-KGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIA 98
++ +++L+K K LG S++ + G + ++ G ++D +LQ GD +
Sbjct: 1 LEKFNVDLMKKAGKELGLSLSPN--------EIGCTIADLIQGQYPEIDSKLQRGDIITK 52
Query: 99 V-----RNSTSED 106
+
Sbjct: 53 FNGDALEGLPFQV 65
Score = 51.2 bits (123), Expect = 2e-09
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 127 IPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
P + G + ++ G ++D +LQ GD +
Sbjct: 21 SPNEIGCTIADLIQGQYPEIDSKLQRGDIITKF 53
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc,
LNX2_human, zinc-finger, polymorphism, ring finger
protein 1; 1.3A {Homo sapiens}
Length = 95
Score = 66.9 bits (164), Expect = 1e-15
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 8/63 (12%)
Query: 39 NMKILDIELVKGN--KGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKL 96
+M+IL + L K + + LG + + G+++ +++GG A DGRL D++
Sbjct: 1 SMEILQVALHKRDSGEQLGIKLVRRTD------EPGVFILDLLEGGLAAQDGRLSSNDRV 54
Query: 97 IAV 99
+A+
Sbjct: 55 LAI 57
Score = 48.4 bits (116), Expect = 2e-08
Identities = 10/43 (23%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+ + G+++ +++GG A DGRL D+++A+
Sbjct: 21 KLVRRTD------EPGVFILDLLEGGLAAQDGRLSSNDRVLAI 57
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor
(LCF), structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.2
Length = 119
Score = 67.5 bits (165), Expect = 2e-15
Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 30 RRKKVTRQGNMKILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGR 89
+Q + + I + GLGFS+AGG + + I V ++ G A +G
Sbjct: 5 SSGATLKQLDGIHVTILHKEEGAGLGFSLAGGADLE----NKVITVHRVFPNGLASQEGT 60
Query: 90 LQVGDKLIAV 99
+Q G++++++
Sbjct: 61 IQKGNEVLSI 70
Score = 50.1 bits (120), Expect = 6e-09
Identities = 10/43 (23%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
++AGG + + I V ++ G A +G +Q G++++++
Sbjct: 32 SLAGGADLE----NKVITVHRVFPNGLASQEGTIQKGNEVLSI 70
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase
binding domain, signaling protein; HET: GNP; 2.10A {Mus
musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A
2lc7_A 1rzx_A
Length = 128
Score = 67.6 bits (165), Expect = 2e-15
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 39 NMKILDIELVKGNKGLGFSIAGGIGNQHIPG----DNGIYVTKIMDGGAAQVDGRLQVGD 94
+ + + K LGF I G + P GI++++++ GG AQ G L V D
Sbjct: 29 THRRVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVND 88
Query: 95 KLIAV 99
+++ V
Sbjct: 89 EVLEV 93
Score = 51.4 bits (123), Expect = 3e-09
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 117 NIAGGIGNQHIPG----DNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
I G + P GI++++++ GG AQ G L V D+++ V
Sbjct: 47 YIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEV 93
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 124
Score = 67.2 bits (164), Expect = 2e-15
Identities = 16/63 (25%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 39 NMKILDIELVKGNK--GLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKL 96
+++ +++L + N LG ++ + D GIY+++I A DGR++ GD++
Sbjct: 17 ELELEEVDLYRMNSQDKLGLTVCYRTDD---EDDIGIYISEIDPNSIAAKDGRIREGDRI 73
Query: 97 IAV 99
I +
Sbjct: 74 IQI 76
Score = 51.4 bits (123), Expect = 3e-09
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+ + D GIY+++I A DGR++ GD++I +
Sbjct: 37 TVCYRTDD---EDDIGIYISEIDPNSIAAKDGRIREGDRIIQI 76
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger,
oxidoreductase; 1.25A {Rattus norvegicus} SCOP:
b.36.1.1 PDB: 1qav_B
Length = 112
Score = 66.7 bits (163), Expect = 3e-15
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Query: 42 ILDIELVK-GNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
++ + L K GLGF + + + ++ ++ GGAA+ G +Q GD ++AV
Sbjct: 2 VISVRLFKRKVGGLGFLVKERVSKP------PVIISDLIRGGAAEQSGLIQAGDIILAV 54
Score = 48.2 bits (115), Expect = 3e-08
Identities = 10/43 (23%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+ + + ++ ++ GGAA+ G +Q GD ++AV
Sbjct: 18 LVKERVSKP------PVIISDLIRGGAAEQSGLIQAGDIILAV 54
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics,
structural genomics consortium, SGC, signaling protein;
1.40A {Homo sapiens}
Length = 92
Score = 65.7 bits (161), Expect = 4e-15
Identities = 29/71 (40%), Positives = 37/71 (52%), Gaps = 12/71 (16%)
Query: 42 ILDIELVKG-NKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV- 99
L I L K KGLG SI G D G++V+ I+ GG A DGRL GD+++ V
Sbjct: 5 TLTIGLQKKPGKGLGLSIVGK------RNDTGVFVSDIVKGGIADADGRLMQGDQILMVN 58
Query: 100 ----RNSTSED 106
RN+T E
Sbjct: 59 GEDVRNATQEA 69
Score = 48.8 bits (117), Expect = 1e-08
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 6/43 (13%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+I G D G++V+ I+ GG A DGRL GD+++ V
Sbjct: 21 SIVGK------RNDTGVFVSDIVKGGIADADGRLMQGDQILMV 57
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal
peptide complex, high affnity ligand, signaling
protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Length = 103
Score = 66.3 bits (162), Expect = 4e-15
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 41 KILDIELVKGNKGLGFSIAGGIG---NQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLI 97
+ + + + K LGFSI+GG+G N P D+GI+VT++ G A LQ GDK+I
Sbjct: 11 QEIRVRVEKD-PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPA--SKLLQPGDKII 67
Query: 98 AV 99
Sbjct: 68 QA 69
Score = 52.4 bits (126), Expect = 7e-10
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 117 NIAGGIG---NQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+I+GG+G N P D+GI+VT++ G A LQ GDK+I
Sbjct: 26 SISGGVGGRGNPFRPDDDGIFVTRVQPEGPA--SKLLQPGDKIIQA 69
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated
to tight junctions, PATJ; NMR {Homo sapiens}
Length = 117
Score = 66.3 bits (162), Expect = 4e-15
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 44 DIELVKG-NKGLGFSIAGGIGNQHIP----GDNGIYVTKIMDGGAAQVDGRLQVGDKLIA 98
+E+ + N LG SI GG GI++ ++++ A L+ GDK++
Sbjct: 18 IVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILE 77
Query: 99 V 99
V
Sbjct: 78 V 78
Score = 51.3 bits (123), Expect = 2e-09
Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 117 NIAGGIGNQHIP----GDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+I GG GI++ ++++ A L+ GDK++ V
Sbjct: 32 SIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEV 78
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex,
erbin., signaling protein; 1.25A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1mfl_A
Length = 95
Score = 65.1 bits (159), Expect = 9e-15
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 40 MKILDIELVKGNKGLGFSIAGGIG---NQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKL 96
+ + + K LGFSI+GG+G N P D+GI+VT++ G A LQ GDK+
Sbjct: 2 SMEIRVRVEKD-PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPA--SKLLQPGDKI 58
Query: 97 IAV 99
I
Sbjct: 59 IQA 61
Score = 51.6 bits (124), Expect = 1e-09
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 117 NIAGGIG---NQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+I+GG+G N P D+GI+VT++ G A LQ GDK+I
Sbjct: 18 SISGGVGGRGNPFRPDDDGIFVTRVQPEGPA--SKLLQPGDKIIQA 61
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain,
RAB3-interacting molecule, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Length = 131
Score = 65.6 bits (160), Expect = 1e-14
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 49 KGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
LG + GG + G ++TK+ G A G L+ GD+++
Sbjct: 45 DSGAMLGLKVVGGKMTES--GRLCAFITKVKKGSLADTVGHLRPGDEVLEW 93
Score = 53.3 bits (128), Expect = 7e-10
Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
Query: 87 DGRLQVGDKLIAVRNSTSEDKRASPGIFLCNIAGGIGNQHIPGDNGIYVTKIMDGGAAQV 146
DG +G L+ R R S + + GG + G ++TK+ G A
Sbjct: 23 DGDRLIGRILLNKRLKDGSVPRDSGAMLGLKVVGGKMTES--GRLCAFITKVKKGSLADT 80
Query: 147 DGRLQVGDKLIAV 159
G L+ GD+++
Sbjct: 81 VGHLRPGDEVLEW 93
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 114
Score = 65.2 bits (159), Expect = 1e-14
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 38 GNMKILDIELVK-GNKGLGFSIAGGIGNQHIPGDN--GIYVTKIMDGGAAQVDGRLQVGD 94
G+++ D+ + + N+G GF I + + +I+DG A +L+VGD
Sbjct: 7 GSLQTSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGD 66
Query: 95 KLIAVRNSTS 104
+++AV N S
Sbjct: 67 RILAV-NGQS 75
Score = 49.4 bits (118), Expect = 1e-08
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 117 NIAGGIGNQHIPGDN--GIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
I + + +I+DG A +L+VGD+++AV
Sbjct: 27 VIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAV 71
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 64.7 bits (158), Expect = 2e-14
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 45 IELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
+ + K LG +I GG + + I GG+A G+L+VG ++ V
Sbjct: 10 VRVKKSAATLGIAIEGGANTRQ----PLPRIVTIQRGGSAHNCGQLKVGHVILEV 60
Score = 46.6 bits (111), Expect = 9e-08
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
I GG + + I GG+A G+L+VG ++ V
Sbjct: 22 AIEGGANTRQ----PLPRIVTIQRGGSAHNCGQLKVGHVILEV 60
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding
protein, membrane, sensory transduction, vision; 1.55A
{Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Length = 96
Score = 64.3 bits (157), Expect = 2e-14
Identities = 13/74 (17%), Positives = 31/74 (41%), Gaps = 14/74 (18%)
Query: 39 NMKILDIELVKGN-KGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLI 97
+++ +++L+K K LG S++ + G + ++ G ++D +LQ GD +
Sbjct: 6 SLEKFNVDLMKKAGKELGLSLSPN--------EIGCTIADLIQGQYPEIDSKLQRGDIIT 57
Query: 98 AV-----RNSTSED 106
+
Sbjct: 58 KFNGDALEGLPFQV 71
Score = 48.5 bits (116), Expect = 2e-08
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 127 IPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
P + G + ++ G ++D +LQ GD +
Sbjct: 27 SPNEIGCTIADLIQGQYPEIDSKLQRGDIITKF 59
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer,
membrane protein-oxidoreductase CO; 1.90A {Mus
musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Length = 90
Score = 63.8 bits (156), Expect = 2e-14
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 38 GNMKILDIELVKG-NKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKL 96
G+++ + + K GLG SI GG N+ I ++KI G AA L VGD +
Sbjct: 1 GSLQRRRVTVRKADAGGLGISIKGGRENKM-----PILISKIFKGLAADQTEALFVGDAI 55
Query: 97 IAV 99
++V
Sbjct: 56 LSV 58
Score = 48.0 bits (115), Expect = 3e-08
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+I GG N+ I ++KI G AA L VGD +++V
Sbjct: 21 SIKGGRENKM-----PILISKIFKGLAADQTEALFVGDAILSV 58
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function;
1.80A {Homo sapiens} PDB: 3ch8_A
Length = 195
Score = 66.5 bits (161), Expect = 2e-14
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 51 NKGLGFSIAGGIG---NQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTSEDK 107
+ LGFSI+GG+G N P D+GI+VT++ G A LQ GDK+I + +
Sbjct: 1 SPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPA--SKLLQPGDKIIQANGYSFINI 58
Score = 51.5 bits (122), Expect = 8e-09
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 117 NIAGGIG---NQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+I+GG+G N P D+GI+VT++ G A LQ GDK+I
Sbjct: 7 SISGGVGGRGNPFRPDDDGIFVTRVQPEGPA--SKLLQPGDKIIQA 50
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase,
protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Length = 125
Score = 63.6 bits (155), Expect = 6e-14
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 7/65 (10%)
Query: 41 KILDIELVKGNKG-LGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
+ L K + +G SI GG +Y+ ++ D A +DG + GD++ V
Sbjct: 19 VPGKVTLQKDAQNLIGISIGGGA-----QYCPCLYIVQVFDNTPAALDGTVAAGDEITGV 73
Query: 100 RNSTS 104
N S
Sbjct: 74 -NGRS 77
Score = 49.0 bits (117), Expect = 2e-08
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+I GG +Y+ ++ D A +DG + GD++ V
Sbjct: 36 SIGGGA-----QYCPCLYIVQVFDNTPAALDGTVAAGDEITGV 73
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein;
structural protein-hydrolase complex, peptide binding
protei; NMR {Homo sapiens}
Length = 112
Score = 63.2 bits (154), Expect = 7e-14
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 45 IELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
+ L + ++GLG SI GG + I +++I G A G L VGD ++AV
Sbjct: 32 LLLKEDHEGLGISITGGKEH-----GVPILISEIHPGQPADRCGGLHVGDAILAV 81
Score = 49.0 bits (117), Expect = 2e-08
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+I GG + I +++I G A G L VGD ++AV
Sbjct: 44 SITGGKEH-----GVPILISEIHPGQPADRCGGLHVGDAILAV 81
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing
isoform B; GOPC PDZ domain, structural protein; NMR
{Homo sapiens}
Length = 103
Score = 62.0 bits (151), Expect = 1e-13
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 45 IELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
+ L + ++GLG SI GG + I +++I G A G L VGD ++AV
Sbjct: 14 LLLKEDHEGLGISITGGKEH-----GVPILISEIHPGQPADRCGGLHVGDAILAV 63
Score = 47.7 bits (114), Expect = 4e-08
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+I GG + I +++I G A G L VGD ++AV
Sbjct: 26 SITGGKEH-----GVPILISEIHPGQPADRCGGLHVGDAILAV 63
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 62.1 bits (151), Expect = 2e-13
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 5/59 (8%)
Query: 42 ILDIELVKG-NKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
L +E+VK LG S+ + I + +I G L GD ++++
Sbjct: 16 PLMVEIVKTPGSALGISLTTTSLR----NKSVITIDRIKPASVVDRSGALHPGDHILSI 70
Score = 46.7 bits (111), Expect = 2e-07
Identities = 6/43 (13%), Positives = 15/43 (34%), Gaps = 4/43 (9%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
++ + I + +I G L GD ++++
Sbjct: 32 SLTTTSLR----NKSVITIDRIKPASVVDRSGALHPGDHILSI 70
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural
genomics, structura genomics consortium, SGC, signaling
protein; 1.12A {Homo sapiens} PDB: 2pku_A
Length = 114
Score = 61.3 bits (149), Expect = 4e-13
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
Query: 40 MKILDIELVKGNKG-LGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIA 98
M + L K + +G SI GG +Y+ ++ D A +DG + GD++
Sbjct: 23 MVPGKVTLQKDAQNLIGISIGGGA-----QYCPCLYIVQVFDNTPAALDGTVAAGDEITG 77
Query: 99 VRNSTS 104
V N S
Sbjct: 78 V-NGRS 82
Score = 47.4 bits (113), Expect = 7e-08
Identities = 11/53 (20%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 107 KRASPGIFLCNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
++ + + +I GG +Y+ ++ D A +DG + GD++ V
Sbjct: 31 QKDAQNLIGISIGGGA-----QYCPCLYIVQVFDNTPAALDGTVAAGDEITGV 78
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Length = 263
Score = 63.6 bits (154), Expect = 5e-13
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 45 IELVKGNK-GLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
+ + K + GLG SI GG N+ I ++KI G AA L VGD +++V
Sbjct: 81 VTVRKADAGGLGISIKGGRENKM-----PILISKIFKGLAADQTEALFVGDAILSV 131
Score = 57.1 bits (137), Expect = 2e-10
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 107 KRASPGIFLCNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
++A G +I GG N+ I ++KI G AA L VGD +++V
Sbjct: 84 RKADAGGLGISIKGGRENKM-----PILISKIFKGLAADQTEALFVGDAILSV 131
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding,
nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens}
PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Length = 139
Score = 61.2 bits (148), Expect = 7e-13
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 12/66 (18%)
Query: 45 IELVKG----NKGLGFSIAGGIGNQ-------HIPGDNGIYVTKIMDGGAAQVDGRLQVG 93
+E+ K N LGFSI GGI D GIYVT++ +GG A++ G LQ+G
Sbjct: 27 VEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIG 85
Query: 94 DKLIAV 99
DK++ V
Sbjct: 86 DKIMQV 91
Score = 48.9 bits (116), Expect = 3e-08
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 8/50 (16%)
Query: 117 NIAGGIGNQ-------HIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+I GGI D GIYVT++ +GG A++ G LQ+GDK++ V
Sbjct: 43 SIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQV 91
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L
homolog; PDZ domain, cellular signaling, structural
genomics; NMR {Mus musculus} SCOP: b.36.1.1
Length = 122
Score = 60.2 bits (146), Expect = 1e-12
Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 39 NMKILDIELVK-GNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLI 97
+ + ++ L G G + G + ++ I A+ G LQ+GD+++
Sbjct: 13 HTETTEVVLTADPVTGFGIQLQGSVFATETLSS-PPLISYIEADSPAERCGVLQIGDRVM 71
Query: 98 AV 99
A+
Sbjct: 72 AI 73
Score = 46.0 bits (109), Expect = 3e-07
Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+ G + ++ I A+ G LQ+GD+++A+
Sbjct: 32 QLQGSVFATETLSS-PPLISYIEADSPAERCGVLQIGDRVMAI 73
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 101
Score = 59.7 bits (145), Expect = 1e-12
Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 6/63 (9%)
Query: 37 QGNMKILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKL 96
G ++++ + K ++GLGFSI GG + GIYV+ + G A+ +G L+VGD++
Sbjct: 6 SGEVRLVSLRRAKAHEGLGFSIRGGSEH-----GVGIYVSLVEPGSLAEKEG-LRVGDQI 59
Query: 97 IAV 99
+ V
Sbjct: 60 LRV 62
Score = 41.2 bits (97), Expect = 1e-05
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 106 DKRASPGIFLCNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+ + +I GG + GIYV+ + G A+ +G L+VGD+++ V
Sbjct: 15 RRAKAHEGLGFSIRGGSEH-----GVGIYVSLVEPGSLAEKEG-LRVGDQILRV 62
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter
usage, alternative splicing, cell junction, cell
membrane, disease mutation; 1.75A {Homo sapiens}
Length = 88
Score = 59.3 bits (144), Expect = 1e-12
Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 10/63 (15%)
Query: 42 ILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRN 101
++ + L+K + + G + I+V ++ G A DG L GD ++ + N
Sbjct: 1 MIGVLLMKSRANEEYGLRLG---------SQIFVKEMTRTGLATKDGNLHEGDIILKI-N 50
Query: 102 STS 104
T
Sbjct: 51 GTV 53
Score = 44.2 bits (105), Expect = 7e-07
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 127 IPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+ + I+V ++ G A DG L GD ++ +
Sbjct: 17 LRLGSQIFVKEMTRTGLATKDGNLHEGDIILKI 49
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled
coil, deafness, hearing, non-syndromic deafness,
polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A
Length = 192
Score = 60.0 bits (145), Expect = 6e-12
Identities = 19/68 (27%), Positives = 40/68 (58%), Gaps = 7/68 (10%)
Query: 33 KVTRQGNMKILDIELVK-GNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQ 91
++T + + K+ ++ L + +GLG S+ GG+ G++++ ++ GG A G LQ
Sbjct: 76 QLTPRRSRKLKEVRLDRLHPEGLGLSVRGGLEF-----GCGLFISHLIKGGQADSVG-LQ 129
Query: 92 VGDKLIAV 99
VGD+++ +
Sbjct: 130 VGDEIVRI 137
Score = 45.7 bits (108), Expect = 1e-06
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 107 KRASPGIFLCNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
R P ++ GG+ G++++ ++ GG A G LQVGD+++ +
Sbjct: 91 DRLHPEGLGLSVRGGLEF-----GCGLFISHLIKGGQADSVG-LQVGDEIVRI 137
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.36.1.1
Length = 117
Score = 58.3 bits (141), Expect = 7e-12
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 8/55 (14%)
Query: 45 IELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
+++ KG++ LG SI G GIYV+K+ G A G L+ GD+L+
Sbjct: 23 VKVQKGSEPLGISIVSG-------EKGGIYVSKVTVGSIAHQAG-LEYGDQLLEF 69
Score = 40.5 bits (95), Expect = 2e-05
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 8/44 (18%)
Query: 116 CNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+I G GIYV+K+ G A G L+ GD+L+
Sbjct: 34 ISIVSG-------EKGGIYVSKVTVGSIAHQAG-LEYGDQLLEF 69
>3gge_A PDZ domain-containing protein GIPC2; structural genomics,
structural genomics consort protein binding; 2.60A {Homo
sapiens}
Length = 95
Score = 57.1 bits (138), Expect = 1e-11
Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 7/65 (10%)
Query: 44 DIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNST 103
++ + K LG +I G ++ +I DGG + VGD + ++
Sbjct: 8 EVNVYKSEDSLGLTITDN-------GVGYAFIKRIKDGGVIDSVKTICVGDHIESINGEN 60
Query: 104 SEDKR 108
R
Sbjct: 61 IVGWR 65
Score = 41.3 bits (97), Expect = 8e-06
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 128 PGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
G ++ +I DGG + VGD + ++
Sbjct: 25 NGVGYAFIKRIKDGGVIDSVKTICVGDHIESI 56
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3;
neuron-specific X11L2 protein, neuronal
MUNC18-1-interacting protein 3, MINT-3; NMR {Homo
sapiens}
Length = 101
Score = 56.7 bits (137), Expect = 1e-11
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 41 KILDIELVKG-NKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
++ L K +GLG ++ +P + ++ GG A+ G L +GD+L A+
Sbjct: 9 NCREVHLEKRRGEGLGVALVESGWGSLLPT---AVIANLLHGGPAERSGALSIGDRLTAI 65
Query: 100 RNSTS 104
N TS
Sbjct: 66 -NGTS 69
Score = 43.2 bits (102), Expect = 2e-06
Identities = 9/38 (23%), Positives = 18/38 (47%)
Query: 122 IGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+ + + ++ GG A+ G L +GD+L A+
Sbjct: 28 VESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAI 65
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing
protein 1; structural genomi consortium, SGC,
ATP-binding, cell junction; 1.60A {Homo sapiens}
Length = 88
Score = 56.5 bits (137), Expect = 1e-11
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 9/61 (14%)
Query: 39 NMKILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIA 98
+M+++ + +VKG G GF+IA PG G V +I+D L+ GD ++
Sbjct: 1 SMELITVHIVKGPMGFGFTIADS------PGGGGQRVKQIVDSPR---SRGLKEGDLIVE 51
Query: 99 V 99
V
Sbjct: 52 V 52
Score = 34.2 bits (79), Expect = 0.003
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 9/43 (20%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
IA PG G V +I+D L+ GD ++ V
Sbjct: 19 TIADS------PGGGGQRVKQIVDSPR---SRGLKEGDLIVEV 52
>2edp_A Fragment, shroom family member 4; APX/shroom family member,
KIAA1202 protein, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 100
Score = 56.6 bits (137), Expect = 2e-11
Identities = 17/62 (27%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 38 GNMKILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLI 97
G+ + + ++L +G GF++ GG+ + + V+KI DGG A + +++ GD+L+
Sbjct: 8 GSFQYVPVQL-QGGAPWGFTLKGGLEHCE-----PLTVSKIEDGGKAALSQKMRTGDELV 61
Query: 98 AV 99
+
Sbjct: 62 NI 63
Score = 43.9 bits (104), Expect = 1e-06
Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+ GG+ + + V+KI DGG A + +++ GD+L+ +
Sbjct: 26 TLKGGLEHCE-----PLTVSKIEDGGKAALSQKMRTGDELVNI 63
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics
consortium, SGC, protein BIN; 1.30A {Homo sapiens}
Length = 93
Score = 55.8 bits (135), Expect = 3e-11
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 45 IELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
I LVK + LG +I I V +IM GGAA G + VGD+L V
Sbjct: 8 IRLVKNREPLGATIKKDEQT------GAIIVARIMRGGAADRSGLIHVGDELREV 56
Score = 38.1 bits (89), Expect = 1e-04
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 129 GDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
I V +IM GGAA G + VGD+L V
Sbjct: 26 QTGAIIVARIMRGGAADRSGLIHVGDELREV 56
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium
channel 3 chimera; PDZ domain, PDZ binding, GIRK3
regulation, early endosomes; 1.68A {Rattus norvegicus}
PDB: 3qdo_A 3qgl_A
Length = 107
Score = 55.8 bits (135), Expect = 4e-11
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 45 IELVKGNKGLGFSIAGGIGNQHIPGDN-------GIYVTKIMDGGAAQVDGRLQVGDKLI 97
+ +VK G GF++ G + +V+ ++ GGAA G ++ GD+++
Sbjct: 10 VRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAG-VRKGDRIL 68
Query: 98 AV 99
V
Sbjct: 69 EV 70
Score = 36.6 bits (85), Expect = 6e-04
Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 8/50 (16%)
Query: 117 NIAGGIGNQHIPGDN-------GIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
N+ G + +V+ ++ GGAA G ++ GD+++ V
Sbjct: 22 NVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAG-VRKGDRILEV 70
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding;
2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A
1u37_A 1u38_A 2yt8_A
Length = 388
Score = 58.8 bits (141), Expect = 5e-11
Identities = 21/132 (15%), Positives = 45/132 (34%), Gaps = 27/132 (20%)
Query: 51 NKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV-----RNSTSE 105
+ LG + +P + + +M+GG A G+L +GD+++++
Sbjct: 215 GEILGVVVVESGWGSILPT---VILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLA 271
Query: 106 D------------------KRASPGIFLCNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVD 147
P + + Q + +M GG A+
Sbjct: 272 TCQGIIKGLKNQTQVKLNIVSCPPVTTVLIKRPDLKYQLGFSVQNGIICSLMRGGIAERG 331
Query: 148 GRLQVGDKLIAV 159
G ++VG ++I +
Sbjct: 332 G-VRVGHRIIEI 342
Score = 42.3 bits (98), Expect = 3e-05
Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 14/72 (19%)
Query: 33 KVTRQGNMKILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQV 92
+ + + I+ LGFS+ G + +M GG A+ G ++V
Sbjct: 289 NIVSCPPVTTVLIKRPDLKYQLGFSVQNG------------IICSLMRGGIAERGG-VRV 335
Query: 93 GDKLIAVRNSTS 104
G ++I + N S
Sbjct: 336 GHRIIEI-NGQS 346
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A
{Homo sapiens}
Length = 96
Score = 53.9 bits (130), Expect = 2e-10
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 45 IELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
+ L KG +G GF + + + G G ++ ++ G A+ G +Q GD+L+AV
Sbjct: 7 LHLEKGPQGFGFLLREE---KGLDGRPGQFLWEVDPGLPAKKAG-MQAGDRLVAV 57
Score = 36.5 bits (85), Expect = 6e-04
Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 123 GNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+ + G G ++ ++ G A+ G +Q GD+L+AV
Sbjct: 22 EEKGLDGRPGQFLWEVDPGLPAKKAG-MQAGDRLVAV 57
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation,
cell projection, disease mutation, membrane,
phosphoprotein, polymorphism; NMR {Homo sapiens}
Length = 216
Score = 56.3 bits (135), Expect = 2e-10
Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 7/55 (12%)
Query: 45 IELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
+ KG G GF++ G ++ + A+ G L+ D+++ V
Sbjct: 13 CTMKKGPSGYGFNLHSD------KSKPGQFIRSVDPDSPAEASG-LRAQDRIVEV 60
Score = 36.7 bits (84), Expect = 0.001
Identities = 7/43 (16%), Positives = 16/43 (37%), Gaps = 7/43 (16%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
N+ G ++ + A+ G L+ D+++ V
Sbjct: 25 NLHSD------KSKPGQFIRSVDPDSPAEASG-LRAQDRIVEV 60
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 100
Score = 53.5 bits (129), Expect = 3e-10
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 7/64 (10%)
Query: 37 QGNMKILDIELVKGNKG-LGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDK 95
G+ I + + K G LGFS+ GG + GI+V+K+ +G +A+ G L VGDK
Sbjct: 6 SGSDIIHSVRVEKSPAGRLGFSVRGGSEH-----GLGIFVSKVEEGSSAERAG-LCVGDK 59
Query: 96 LIAV 99
+ V
Sbjct: 60 ITEV 63
Score = 42.7 bits (101), Expect = 3e-06
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 107 KRASPGIFLCNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+++ G ++ GG + GI+V+K+ +G +A+ G L VGDK+ V
Sbjct: 17 EKSPAGRLGFSVRGGSEH-----GLGIFVSKVEEGSSAERAG-LCVGDKITEV 63
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune
enteropathy-related antigen AIE-75 ,antigen
NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2kbs_A
Length = 114
Score = 53.3 bits (128), Expect = 4e-10
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 47 LVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
+ G++GLG SI+ G GI+++ + G + G L++GD+++ V
Sbjct: 22 SLVGSRGLGCSISSGPIQ-----KPGIFISHVKPGSLSAEVG-LEIGDQIVEV 68
Score = 41.3 bits (97), Expect = 1e-05
Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
Query: 116 CNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
C+I+ G GI+++ + G + G L++GD+++ V
Sbjct: 31 CSISSGPIQ-----KPGIFISHVKPGSLSAEVG-LEIGDQIVEV 68
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 128
Score = 53.7 bits (129), Expect = 5e-10
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 30 RRKKVTRQGNMKILDIELVKG-NKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDG 88
RR + + LV G + LG +I GG GIY+T + G A+ G
Sbjct: 9 RRSTLHLLQGGDEKKVNLVLGDGRSLGLTIRGGAEY-----GLGIYITGVDPGSEAEGSG 63
Query: 89 RLQVGDKLIAV 99
L+VGD+++ V
Sbjct: 64 -LKVGDQILEV 73
Score = 39.8 bits (93), Expect = 5e-05
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 6/53 (11%)
Query: 107 KRASPGIFLCNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
I GG GIY+T + G A+ G L+VGD+++ V
Sbjct: 27 VLGDGRSLGLTIRGGAEY-----GLGIYITGVDPGSEAEGSG-LKVGDQILEV 73
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell
adhesion; 1.99A {Homo sapiens} PDB: 3shu_A
Length = 124
Score = 53.3 bits (128), Expect = 5e-10
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
Query: 47 LVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
+ +G +AGG D GI+V +++ A +G L+ GD+++ V
Sbjct: 34 KFRKGDSVGLRLAGG-------NDVGIFVAGVLEDSPAAKEG-LEEGDQILRV 78
Score = 41.7 bits (98), Expect = 1e-05
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 8/44 (18%)
Query: 116 CNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+AGG D GI+V +++ A +G L+ GD+++ V
Sbjct: 43 LRLAGG-------NDVGIFVAGVLEDSPAAKEG-LEEGDQILRV 78
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction,
membrane, phosphoprot domain, tight junction,
transmembrane; 2.40A {Homo sapiens}
Length = 92
Score = 52.8 bits (127), Expect = 5e-10
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 10/64 (15%)
Query: 41 KILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVR 100
K + LVK K + + + I+V +I A DG +Q GD ++ +
Sbjct: 2 KPTKVTLVKSAKNEEYGLRLA---------SHIFVKEISQDSLAARDGNIQEGDVVLKI- 51
Query: 101 NSTS 104
N T
Sbjct: 52 NGTV 55
Score = 41.2 bits (97), Expect = 9e-06
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 127 IPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+ + I+V +I A DG +Q GD ++ +
Sbjct: 19 LRLASHIFVKEISQDSLAARDGNIQEGDVVLKI 51
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo
sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A
2ocs_A
Length = 91
Score = 52.3 bits (126), Expect = 6e-10
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 7/55 (12%)
Query: 45 IELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
L KG G GF + G G G Y+ + G A+ G L GD+L+ V
Sbjct: 7 CCLEKGPNGYGFHLHGE------KGKLGQYIRLVEPGSPAEKAG-LLAGDRLVEV 54
Score = 34.6 bits (80), Expect = 0.002
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 129 GDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
G G Y+ + G A+ G L GD+L+ V
Sbjct: 25 GKLGQYIRLVEPGSPAEKAG-LLAGDRLVEV 54
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two
alpha-helices, protein binding; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 91
Score = 52.4 bits (126), Expect = 6e-10
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 10/67 (14%)
Query: 40 MKILDIELVK--GNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLI 97
+++ + L K G + GFS+A G+ + G+YV I G + G L+ D+L+
Sbjct: 5 VELHKVTLYKDSGMEDFGFSVADGLL------EKGVYVKNIRPAGPGDLGG-LKPYDRLL 57
Query: 98 AVRNSTS 104
V N
Sbjct: 58 QV-NHVR 63
Score = 40.0 bits (94), Expect = 3e-05
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
++A G+ + G+YV I G + G L+ D+L+ V
Sbjct: 24 SVADGLL------EKGVYVKNIRPAGPGDLGG-LKPYDRLLQV 59
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 104
Score = 52.7 bits (127), Expect = 6e-10
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 7/56 (12%)
Query: 45 IELVKG-NKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
+ L K LGF+I GG +Q GI+++K++ A G LQ GD+++AV
Sbjct: 19 VTLKKPPGAQLGFNIRGGKASQL-----GIFISKVIPDSDAHRAG-LQEGDQVLAV 68
Score = 40.8 bits (96), Expect = 2e-05
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 107 KRASPGIFLCNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
K+ NI GG +Q GI+++K++ A G LQ GD+++AV
Sbjct: 22 KKPPGAQLGFNIRGGKASQL-----GIFISKVIPDSDAHRAG-LQEGDQVLAV 68
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 106
Score = 52.8 bits (127), Expect = 6e-10
Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 7/55 (12%)
Query: 45 IELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
LVK GFS+ G G+Y+T I G A G + D LI V
Sbjct: 12 CYLVKEGGSYGFSLKTV------QGKKGVYMTDITPQGVAMRAG-VLADDHLIEV 59
Score = 35.8 bits (83), Expect = 0.001
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 121 GIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
G + + G G+Y+T I G A G + D LI V
Sbjct: 22 GFSLKTVQGKKGVYMTDITPQGVAMRAG-VLADDHLIEV 59
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain,
protein, acetylation, cell projection, disease mutation,
membrane; NMR {Homo sapiens}
Length = 128
Score = 52.2 bits (125), Expect = 2e-09
Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 7/63 (11%)
Query: 45 IELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTS 104
+ KG G GF++ G ++ + A+ G L+ D+++ V
Sbjct: 13 CTMKKGPSGYGFNLHSD------KSKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCM 65
Query: 105 EDK 107
E K
Sbjct: 66 EGK 68
Score = 33.3 bits (76), Expect = 0.011
Identities = 6/33 (18%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 129 GDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRN 161
G ++ + A+ G L+ D+++ V
Sbjct: 31 SKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNG 62
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding
site complex, protein binding; 1.43A {Homo sapiens}
PDB: 3nfl_A 2vph_A
Length = 107
Score = 51.7 bits (124), Expect = 2e-09
Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 7/61 (11%)
Query: 41 KILDIELVKG-NKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAA-QVDGRLQVGDKLIA 98
++ I + N GF++ GG + V+++ G A RL GD+++
Sbjct: 17 NLVLIRMKPDENGRFGFNVKGGYDQ-----KMPVIVSRVAPGTPADLCVPRLNEGDQVVL 71
Query: 99 V 99
+
Sbjct: 72 I 72
Score = 39.8 bits (93), Expect = 5e-05
Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 6/54 (11%)
Query: 107 KRASPGIFLCNIAGGIGNQHIPGDNGIYVTKIMDGGAA-QVDGRLQVGDKLIAV 159
K G F N+ GG + V+++ G A RL GD+++ +
Sbjct: 24 KPDENGRFGFNVKGGYDQ-----KMPVIVSRVAPGTPADLCVPRLNEGDQVVLI 72
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1
protein, structural genomics, riken structural
genomics/proteomics initiative; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 113
Score = 51.7 bits (124), Expect = 2e-09
Identities = 12/56 (21%), Positives = 28/56 (50%), Gaps = 9/56 (16%)
Query: 45 IELVKG-NKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
+ + K + LG ++ + + +++I+ GGAA+ G L GD+++ +
Sbjct: 29 VRIEKARDIPLGATVRNE--------MDSVIISRIVKGGAAEKSGLLHEGDEVLEI 76
Score = 42.1 bits (99), Expect = 7e-06
Identities = 9/31 (29%), Positives = 20/31 (64%)
Query: 129 GDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+ + +++I+ GGAA+ G L GD+++ +
Sbjct: 46 EMDSVIISRIVKGGAAEKSGLLHEGDEVLEI 76
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain,
adaptor protein, SR-BI, signaling protein; 1.30A {Mus
musculus} PDB: 3r69_A*
Length = 95
Score = 51.1 bits (123), Expect = 2e-09
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 7/55 (12%)
Query: 45 IELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
+ + KG+ G GF + G P G + I G A+ G L+ D ++AV
Sbjct: 9 VVIKKGSNGYGFYLRAG------PEQKGQIIKDIEPGSPAEAAG-LKNNDLVVAV 56
Score = 34.6 bits (80), Expect = 0.002
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 125 QHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+ P G + I G A+ G L+ D ++AV
Sbjct: 23 RAGPEQKGQIIKDIEPGSPAEAAG-LKNNDLVVAV 56
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation,
structural genomics, structural genomics consortium,
SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Length = 90
Score = 51.1 bits (123), Expect = 2e-09
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 7/55 (12%)
Query: 45 IELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
L KG +G GF++ G Y+ + G A G L+ D+LI V
Sbjct: 8 CHLRKGPQGYGFNLHSD------KSRPGQYIRSVDPGSPAARSG-LRAQDRLIEV 55
Score = 33.4 bits (77), Expect = 0.006
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 128 PGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
G Y+ + G A G L+ D+LI V
Sbjct: 25 KSRPGQYIRSVDPGSPAARSG-LRAQDRLIEV 55
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm,
phosphoprotein, transport protein, CAsp; 2.60A {Homo
sapiens} PDB: 2eej_A
Length = 91
Score = 51.1 bits (123), Expect = 2e-09
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 7/55 (12%)
Query: 45 IELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
L KG G GF + G G ++ ++ GG A + G L+ D +I V
Sbjct: 7 CRLAKGENGYGFHLNAI------RGLPGSFIKEVQKGGPADLAG-LEDEDVIIEV 54
Score = 35.7 bits (83), Expect = 8e-04
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 125 QHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
I G G ++ ++ GG A + G L+ D +I V
Sbjct: 21 NAIRGLPGSFIKEVQKGGPADLAG-LEDEDVIIEV 54
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 96
Score = 50.9 bits (122), Expect = 2e-09
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 11/64 (17%)
Query: 38 GNMKILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLI 97
G +++ + +VKG +G GF+IA Q V +I+D L GD ++
Sbjct: 7 GQAELMTLTIVKGAQGFGFTIADSPTGQR--------VKQILDIQGC---PGLCEGDLIV 55
Query: 98 AVRN 101
+
Sbjct: 56 EINQ 59
Score = 28.9 bits (65), Expect = 0.30
Identities = 9/45 (20%), Positives = 14/45 (31%), Gaps = 11/45 (24%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRN 161
IA Q V +I+D L GD ++ +
Sbjct: 26 TIADSPTGQR--------VKQILDIQGC---PGLCEGDLIVEINQ 59
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ
domain, PDZ2, acetylation, cell projection, membrane,
polymorphism; NMR {Homo sapiens}
Length = 98
Score = 50.4 bits (121), Expect = 4e-09
Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 7/55 (12%)
Query: 45 IELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
+ KG G GF++ G ++ + A+ G L+ D+++ V
Sbjct: 13 CTMKKGPSGYGFNLHSD------KSKPGQFIRSVDPDSPAEASG-LRAQDRIVEV 60
Score = 32.7 bits (75), Expect = 0.012
Identities = 6/32 (18%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 128 PGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
G ++ + A+ G L+ D+++ V
Sbjct: 30 KSKPGQFIRSVDPDSPAEASG-LRAQDRIVEV 60
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction,
membrane, phosphorylati domain, protein binding; 1.70A
{Homo sapiens} PDB: 2jwe_A 2osg_A
Length = 81
Score = 49.6 bits (119), Expect = 4e-09
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 9/55 (16%)
Query: 45 IELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
+ LVK K + + + I+V +I A DG +Q GD ++ +
Sbjct: 4 VTLVKSRKNEEYGLRLA---------SHIFVKEISQDSLAARDGNIQEGDVVLKI 49
Score = 42.3 bits (100), Expect = 3e-06
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 127 IPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+ + I+V +I A DG +Q GD ++ +
Sbjct: 17 LRLASHIFVKEISQDSLAARDGNIQEGDVVLKI 49
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3,
human, structural genomics, structural GE consortium,
SGC, signaling protein; 2.39A {Homo sapiens} SCOP:
b.36.1.1
Length = 91
Score = 50.1 bits (120), Expect = 5e-09
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 10/61 (16%)
Query: 39 NMKILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIA 98
+M+ I + +G G GF+I D+ + V + GG A+ G LQ D ++
Sbjct: 1 SMRYRQITIPRGKDGFGFTIC---------CDSPVRVQAVDSGGPAERAG-LQQLDTVLQ 50
Query: 99 V 99
+
Sbjct: 51 L 51
Score = 35.0 bits (81), Expect = 0.002
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 126 HIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
I D+ + V + GG A+ G LQ D ++ +
Sbjct: 19 TICCDSPVRVQAVDSGGPAERAG-LQQLDTVLQL 51
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain,
scaffolding protein signaling protein; 1.56A {Homo
sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A
1obz_A 1w9o_A 1w9q_A 1ybo_A
Length = 166
Score = 51.4 bits (123), Expect = 5e-09
Identities = 24/147 (16%), Positives = 47/147 (31%), Gaps = 34/147 (23%)
Query: 38 GNMKILDIELVKG-NKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKL 96
G M ++ L K + +G + DNGI+V + A + G L+ GD++
Sbjct: 1 GAMDPREVILCKDQDGKIGLRLKSI--------DNGIFVQLVQANSPASLVG-LRFGDQV 51
Query: 97 IAV-----RNSTSED-----------------KRASPGIFLCNIAGGIGNQHIPGDNGIY 134
+ + +S+ + + G+ NG
Sbjct: 52 LQINGENCAGWSSDKAHKVLKQAFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKI 111
Query: 135 VTKIMDGGAAQVDGRLQVGDKLIAVRN 161
T I+ +A +G L + +
Sbjct: 112 -TSIVKDSSAARNG-LLTEHNICEING 136
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain,
ptpase, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 119
Score = 50.6 bits (121), Expect = 5e-09
Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 7/61 (11%)
Query: 41 KILDIELVKG-NKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAA-QVDGRLQVGDKLIA 98
++ I + N GF++ GG + V+++ G A RL GD+++
Sbjct: 15 NLVLIRMKPDENGRFGFNVKGGYDQ-----KMPVIVSRVAPGTPADLCVPRLNEGDQVVL 69
Query: 99 V 99
+
Sbjct: 70 I 70
Score = 41.4 bits (97), Expect = 1e-05
Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 6/54 (11%)
Query: 107 KRASPGIFLCNIAGGIGNQHIPGDNGIYVTKIMDGGAA-QVDGRLQVGDKLIAV 159
K G F N+ GG + V+++ G A RL GD+++ +
Sbjct: 22 KPDENGRFGFNVKGGYDQ-----KMPVIVSRVAPGTPADLCVPRLNEGDQVVLI 70
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling
protein; NMR {Homo sapiens}
Length = 83
Score = 48.4 bits (116), Expect = 1e-08
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 10/55 (18%)
Query: 45 IELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
+E+ +G G GF+++ G ++ +M G A G L+ GD+++AV
Sbjct: 6 VEVARGRAGYGFTLS---------GQAPCVLSCVMRGSPADFVG-LRAGDQILAV 50
Score = 36.8 bits (86), Expect = 3e-04
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 126 HIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+ G ++ +M G A G L+ GD+++AV
Sbjct: 18 TLSGQAPCVLSCVMRGSPADFVG-LRAGDQILAV 50
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing
protein 3; structural genomics consortium, SGC, PDZ
domain, signaling P; 1.60A {Homo sapiens}
Length = 113
Score = 49.1 bits (117), Expect = 2e-08
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 11/59 (18%)
Query: 41 KILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
++ I L+KG KG GF+IA Q + I+D +Q LQ GD + +
Sbjct: 12 LLVTIPLIKGPKGFGFAIADSPTGQKVK--------MILD---SQWCQGLQKGDIIKEI 59
Score = 26.0 bits (57), Expect = 3.9
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 3/31 (9%)
Query: 129 GDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
G V I+D +Q LQ GD + +
Sbjct: 32 SPTGQKVKMILD---SQWCQGLQKGDIIKEI 59
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 102
Score = 48.5 bits (116), Expect = 2e-08
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 7/55 (12%)
Query: 45 IELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
+ + KG+ G GF + G P G + I G A+ G L+ D ++AV
Sbjct: 10 VVIKKGSNGYGFYLRAG------PEQKGQIIKDIEPGSPAEAAG-LKNNDLVVAV 57
Score = 32.3 bits (74), Expect = 0.018
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 125 QHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+ P G + I G A+ G L+ D ++AV
Sbjct: 24 RAGPEQKGQIIKDIEPGSPAEAAG-LKNNDLVVAV 57
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, signaling protein; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 100
Score = 48.6 bits (116), Expect = 2e-08
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 10/61 (16%)
Query: 39 NMKILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIA 98
N + L I + +G G GF+I D+ + V + GG A+ G LQ D ++
Sbjct: 13 NGEKLQITIRRGKDGFGFTIC---------CDSPVRVQAVDSGGPAERAG-LQQLDTVLQ 62
Query: 99 V 99
+
Sbjct: 63 L 63
Score = 35.1 bits (81), Expect = 0.002
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 127 IPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
I D+ + V + GG A+ G LQ D ++ +
Sbjct: 32 ICCDSPVRVQAVDSGGPAERAG-LQQLDTVLQL 63
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics,
structural genomics consort metal binding protein;
1.70A {Homo sapiens} PDB: 3pdv_A
Length = 87
Score = 47.7 bits (114), Expect = 3e-08
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 47 LVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
V G GF I GG I VTK+ + G A+ D L+ GD ++A+
Sbjct: 7 DVAGPAPWGFRITGGRDFHT-----PIMVTKVAERGKAK-DADLRPGDIIVAI 53
Score = 34.6 bits (80), Expect = 0.002
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
I GG I VTK+ + G A+ D L+ GD ++A+
Sbjct: 17 RITGGRDFHT-----PIMVTKVAERGKAK-DADLRPGDIIVAI 53
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated
protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 96
Score = 47.7 bits (114), Expect = 4e-08
Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 11/55 (20%)
Query: 45 IELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
I+ + GF I+ + V + GG+A G+L GD+++ +
Sbjct: 14 IDKDTLLQDYGFHISE---------SLPLTVVAVTAGGSA--HGKLFPGDQILQM 57
Score = 42.0 bits (99), Expect = 5e-06
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 126 HIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
HI + V + GG+A G+L GD+++ +
Sbjct: 26 HISESLPLTVVAVTAGGSA--HGKLFPGDQILQM 57
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 50.3 bits (119), Expect = 5e-08
Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 13/65 (20%)
Query: 47 LVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKL-----IAVRN 101
+ +G +AGG D GI+V +++ A +G L+ GD++ + N
Sbjct: 6 KFRKGDSVGLRLAGG-------NDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTN 57
Query: 102 STSED 106
E+
Sbjct: 58 IIREE 62
Score = 37.6 bits (86), Expect = 0.001
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 13/53 (24%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKL-----IAVRNSTR 164
+AGG D GI+V +++ A +G L+ GD++ + N R
Sbjct: 16 RLAGG-------NDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIR 60
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding,
protein-binding, RHOB, nitration, cytoplasm, PDZ
domain, CAsp8; 1.82A {Homo sapiens}
Length = 109
Score = 47.5 bits (113), Expect = 5e-08
Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 10/55 (18%)
Query: 45 IELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
I LGF++ G+ + V + +A V G + GD ++++
Sbjct: 27 IRFTAEEGDLGFTLR---------GNAPVQVHFLDPYCSASVAG-AREGDYIVSI 71
Score = 34.8 bits (80), Expect = 0.003
Identities = 7/33 (21%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 127 IPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+ G+ + V + +A V G + GD ++++
Sbjct: 40 LRGNAPVQVHFLDPYCSASVAG-AREGDYIVSI 71
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane
protein; NMR {Homo sapiens} PDB: 2ev8_A
Length = 97
Score = 47.0 bits (112), Expect = 6e-08
Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 8/56 (14%)
Query: 45 IELVKG-NKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
I+ K + +G + V +I+ GG G L VGD+++ +
Sbjct: 16 IQFEKVTEEPMGICLKLN-------EKQSCTVARILHGGMIHRQGSLHVGDEILEI 64
Score = 38.5 bits (90), Expect = 1e-04
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 129 GDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
V +I+ GG G L VGD+++ +
Sbjct: 34 EKQSCTVARILHGGMIHRQGSLHVGDEILEI 64
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 94
Score = 46.9 bits (112), Expect = 7e-08
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Query: 48 VKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
V G GF I+GG I VTK+ + G A+ L+ GD ++A+
Sbjct: 12 VAGPAPWGFRISGGRDFHT-----PIIVTKVTERGKAEAAD-LRPGDIIVAI 57
Score = 34.6 bits (80), Expect = 0.002
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
I+GG I VTK+ + G A+ L+ GD ++A+
Sbjct: 21 RISGGRDFHT-----PIIVTKVTERGKAEAAD-LRPGDIIVAI 57
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight
junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A
3lh5_A
Length = 391
Score = 49.4 bits (117), Expect = 8e-08
Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 13/65 (20%)
Query: 47 LVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIA-----VRN 101
+ +G +AGG D GI+V +++ A +G L+ GD+++ N
Sbjct: 14 KFRKGDSVGLRLAGG-------NDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTN 65
Query: 102 STSED 106
E+
Sbjct: 66 IIREE 70
Score = 37.5 bits (86), Expect = 0.001
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 8/43 (18%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+AGG D GI+V +++ A +G L+ GD+++ V
Sbjct: 24 RLAGG-------NDVGIFVAGVLEDSPAAKEG-LEEGDQILRV 58
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ
domain, arhgef11, KIAA0380, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A
Length = 93
Score = 46.1 bits (110), Expect = 1e-07
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 10/55 (18%)
Query: 45 IELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
+ + K G GF+++ GD + V + GGAA G ++ GD++I V
Sbjct: 12 VIIQKDQHGFGFTVS---------GDRIVLVQSVRPGGAAMKAG-VKEGDRIIKV 56
Score = 35.0 bits (81), Expect = 0.002
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 126 HIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+ GD + V + GGAA G ++ GD++I V
Sbjct: 24 TVSGDRIVLVQSVRPGGAAMKAG-VKEGDRIIKV 56
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor
clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Length = 88
Score = 45.4 bits (108), Expect = 2e-07
Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 8/56 (14%)
Query: 45 IELVKG-NKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
++ K ++ +G ++ N V +IM GG G L VGD++ +
Sbjct: 5 VQFQKNTDEPMGITLKMN-------ELNHCIVARIMHGGMIHRQGTLHVGDEIREI 53
Score = 35.8 bits (83), Expect = 0.001
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 129 GDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
N V +IM GG G L VGD++ +
Sbjct: 23 ELNHCIVARIMHGGMIHRQGTLHVGDEIREI 53
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog,
phosphorylation, signaling PR LIM domain, PDZ domain;
1.5A {Homo sapiens}
Length = 88
Score = 45.3 bits (108), Expect = 3e-07
Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
Query: 40 MKILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
M + L G GF + GG + ++ + DGG A +++GD ++++
Sbjct: 2 MSNYSVSL-VGPAPWGFRLQGGKDFNM-----PLTISSLKDGGKAA-QANVRIGDVVLSI 54
Query: 100 RNSTSED 106
++
Sbjct: 55 DGINAQG 61
Score = 33.8 bits (78), Expect = 0.004
Identities = 8/44 (18%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
Query: 116 CNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+ GG + ++ + DGG A +++GD ++++
Sbjct: 17 FRLQGGKDFNM-----PLTISSLKDGGKAA-QANVRIGDVVLSI 54
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural
genomics consortium, SGC; 1.11A {Homo sapiens}
Length = 89
Score = 45.0 bits (107), Expect = 3e-07
Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 7/60 (11%)
Query: 40 MKILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
M + L +G GF + GG + ++++ GG A G + VGD ++++
Sbjct: 2 MDSFKVVL-EGPAPWGFRLQGGKDFNV-----PLSISRLTPGGKAAQAG-VAVGDWVLSI 54
Score = 33.4 bits (77), Expect = 0.006
Identities = 9/43 (20%), Positives = 20/43 (46%), Gaps = 6/43 (13%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+ GG + ++++ GG A G + VGD ++++
Sbjct: 18 RLQGGKDFNV-----PLSISRLTPGGKAAQAG-VAVGDWVLSI 54
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3,
microtubule associated serine/threonine kinase 3, PDZ
domain, structural genomics; 1.20A {Homo sapiens} PDB:
2w7r_A 2kqf_A 2kyl_A 3ps4_A
Length = 99
Score = 45.1 bits (107), Expect = 3e-07
Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 3/57 (5%)
Query: 45 IELVKGNKGLGFSIAGGIGNQHIPGDN--GIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
I + K GFS+ V + DG AQ + L+ GD + +
Sbjct: 6 IVIHSSGKKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQ-EAGLRAGDLITHI 61
Score = 29.3 bits (66), Expect = 0.20
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 132 GIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
V + DG AQ + L+ GD + +
Sbjct: 35 HHVVWSVEDGSPAQ-EAGLRAGDLITHI 61
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 45.4 bits (108), Expect = 3e-07
Identities = 11/52 (21%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
Query: 48 VKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
+ G GF + GG + ++ + DGG A +++GD ++++
Sbjct: 11 LVGPAPWGFRLQGGKDFNM-----PLTISSLKDGGKAS-QAHVRIGDVVLSI 56
Score = 34.3 bits (79), Expect = 0.004
Identities = 8/43 (18%), Positives = 20/43 (46%), Gaps = 6/43 (13%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+ GG + ++ + DGG A +++GD ++++
Sbjct: 20 RLQGGKDFNM-----PLTISSLKDGGKAS-QAHVRIGDVVLSI 56
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 126
Score = 45.7 bits (108), Expect = 4e-07
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 24/78 (30%)
Query: 45 IELVKGNKGLGFSIAG-----------------------GIGNQHIPGDNGIYVTKIMDG 81
+ L + ++G GF++ G + + I+V ++ +G
Sbjct: 12 VTLKRTSQGFGFTLRHFIVYPPESAIQFSYKDEENGNRGGKQRNRLEPMDTIFVKQVKEG 71
Query: 82 GAAQVDGRLQVGDKLIAV 99
G A G L GD++I V
Sbjct: 72 GPAFEAG-LCTGDRIIKV 88
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ
domain, cytoskeleton, actin binding, structural
genomics; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 44.7 bits (106), Expect = 7e-07
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Query: 48 VKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
+ G GF ++GGI + +T+I G A L GD ++A+
Sbjct: 11 LPGPAPWGFRLSGGIDFNQ-----PLVITRITPGSKAA-AANLCPGDVILAI 56
Score = 33.1 bits (76), Expect = 0.011
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 6/43 (13%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
++GGI + +T+I G A L GD ++A+
Sbjct: 20 RLSGGIDFNQ-----PLVITRITPGSKAA-AANLCPGDVILAI 56
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding
protein; PDZ domain, cytoplasm, membrane, polymorphism,
protein binding; 2.70A {Homo sapiens}
Length = 104
Score = 43.6 bits (103), Expect = 1e-06
Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 4/59 (6%)
Query: 44 DIELVK-GNKGLGFSIAGGIG--NQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
+ + K N+ GF I + + KI + A G LQ GD L +
Sbjct: 18 LVTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAG-LQAGDVLANI 75
Score = 31.3 bits (71), Expect = 0.050
Identities = 10/45 (22%), Positives = 14/45 (31%), Gaps = 3/45 (6%)
Query: 117 NIAGGIG--NQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
I + + KI + A G LQ GD L +
Sbjct: 32 EIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAG-LQAGDVLANI 75
>2ego_A General receptor for phosphoinositides 1- associated scaffold
protein; PDZ domain, ligand-free, protein binding;
1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Length = 96
Score = 43.5 bits (103), Expect = 1e-06
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 45 IELVKG-NKGLGFSIAGGIGNQHI--PGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
+ L KG N+ GF I + + +V ++ + AQ+ G L GD + +V
Sbjct: 8 LTLEKGDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAG-LTPGDTIASV 64
Score = 31.2 bits (71), Expect = 0.039
Identities = 8/31 (25%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 129 GDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+ +V ++ + AQ+ G L GD + +V
Sbjct: 35 VEMVTFVARVHESSPAQLAG-LTPGDTIASV 64
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics,
structural genomics consort unknown function; HET: PG4;
1.50A {Homo sapiens} PDB: 2v1w_A*
Length = 91
Score = 43.1 bits (102), Expect = 2e-06
Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Query: 48 VKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
++G GF + GG + + ++++ G A L +GD + A+
Sbjct: 9 LQGPGPWGFRLVGGKDFEQ-----PLAISRVTPGSKAA-LANLCIGDVITAI 54
Score = 31.9 bits (73), Expect = 0.020
Identities = 8/44 (18%), Positives = 18/44 (40%), Gaps = 6/44 (13%)
Query: 116 CNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+ GG + + ++++ G A L +GD + A+
Sbjct: 17 FRLVGGKDFEQ-----PLAISRVTPGSKAA-LANLCIGDVITAI 54
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 43.0 bits (102), Expect = 2e-06
Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 6/52 (11%)
Query: 48 VKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
++G GF + GG + ++++ G A + L GD + A+
Sbjct: 14 LRGPSPWGFRLVGGRDFSA-----PLTISRVHAGSKAALAA-LCPGDLIQAI 59
Score = 32.2 bits (74), Expect = 0.017
Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 6/43 (13%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+ GG + ++++ G A + L GD + A+
Sbjct: 23 RLVGGRDFSA-----PLTISRVHAGSKAALAA-LCPGDLIQAI 59
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere,
structural protein; NMR {Homo sapiens} SCOP: b.36.1.1
PDB: 1wjl_A
Length = 85
Score = 42.6 bits (101), Expect = 2e-06
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 6/52 (11%)
Query: 48 VKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
+ G GF + GG + +++I G A +L GD ++A+
Sbjct: 7 LTGPGPWGFRLQGGKDFNM-----PLTISRITPGSKAA-QSQLSQGDLVVAI 52
Score = 32.6 bits (75), Expect = 0.012
Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 6/43 (13%)
Query: 117 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+ GG + +++I G A +L GD ++A+
Sbjct: 16 RLQGGKDFNM-----PLTISRITPGSKAA-QSQLSQGDLVVAI 52
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil,
PDZ, guanine-nucleotide releasing factor,
phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Length = 132
Score = 43.8 bits (103), Expect = 2e-06
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 8/62 (12%)
Query: 45 IELVKGNKGLGFSIAGGIG----NQHIPGDN---GIYVTKIMDGGAAQVDGRLQVGDKLI 97
+ K ++G GF + G + P Y+ + +GG A G L++GD LI
Sbjct: 32 LLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLI 90
Query: 98 AV 99
V
Sbjct: 91 EV 92
Score = 30.7 bits (69), Expect = 0.12
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 132 GIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
Y+ + +GG A G L++GD LI V
Sbjct: 66 LQYLESVDEGGVAWRAG-LRMGDFLIEV 92
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain,
intracellular signaling cascade, signal transduction;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 111
Score = 42.5 bits (100), Expect = 5e-06
Identities = 10/55 (18%), Positives = 22/55 (40%), Gaps = 10/55 (18%)
Query: 45 IELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
I LGF++ G+ + V + +A + G + GD ++++
Sbjct: 19 IHFTVEEGDLGFTLR---------GNTPVQVHFLDPHCSASLAG-AKEGDYIVSI 63
Score = 31.7 bits (72), Expect = 0.042
Identities = 6/34 (17%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 126 HIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+ G+ + V + +A + G + GD ++++
Sbjct: 31 TLRGNTPVQVHFLDPHCSASLAG-AKEGDYIVSI 63
>2eaq_A LIM domain only protein 7; conserved hypothetical protein,
structural genomics, NPPSFA; 1.46A {Homo sapiens}
Length = 90
Score = 41.6 bits (98), Expect = 6e-06
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 9/50 (18%)
Query: 50 GNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
+ GF+I GI+V + G A+ +LQV D++IA+
Sbjct: 15 KSLDFGFTIKWD--------IPGIFVASVEAGSPAE-FSQLQVDDEIIAI 55
Score = 36.6 bits (85), Expect = 4e-04
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 120 GGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
G GI+V + G A+ +LQV D++IA+
Sbjct: 17 LDFGFTIKWDIPGIFVASVEAGSPAE-FSQLQVDDEIIAI 55
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus
norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A
3o5n_A*
Length = 109
Score = 41.7 bits (98), Expect = 8e-06
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 8/58 (13%)
Query: 49 KGNKGLGFSIAGGIGNQHIPGDN-------GIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
K ++G GF + G I Y+ + +GG A G L++GD LI V
Sbjct: 16 KDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEV 72
Score = 29.0 bits (65), Expect = 0.33
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 132 GIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
Y+ + +GG A G L++GD LI V
Sbjct: 46 LQYLESVDEGGVAWRAG-LRMGDFLIEV 72
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70
kDa, Na/PI cotransporter C- terminal-associated
protein, NAPI-CAP1; NMR {Mus musculus}
Length = 114
Score = 41.3 bits (97), Expect = 1e-05
Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 8/57 (14%)
Query: 44 DIELVKG-NKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
+ +L K + GF + +G + I +G A+ G L GD+++ +
Sbjct: 16 ECKLSKQEGQNYGFFLRIE------KDTDGHLIRVIEEGSPAEKAG-LLDGDRVLRI 65
Score = 31.7 bits (72), Expect = 0.042
Identities = 8/31 (25%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 129 GDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+G + I +G A+ G L GD+++ +
Sbjct: 36 DTDGHLIRVIEEGSPAEKAG-LLDGDRVLRI 65
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs
large homolog 2, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 91
Score = 40.1 bits (94), Expect = 2e-05
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 9/56 (16%)
Query: 45 IELVK-GNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
+ + K + LG + + + +I+ GG G L VGD + V
Sbjct: 10 VGIRKTAGEHLGVTFRVE--------GGELVIARILHGGMVAQQGLLHVGDIIKEV 57
Score = 34.0 bits (78), Expect = 0.004
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 129 GDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+ + +I+ GG G L VGD + V
Sbjct: 27 EGGELVIARILHGGMVAQQGLLHVGDIIKEV 57
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 40.4 bits (94), Expect = 3e-05
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 8/61 (13%)
Query: 42 ILDIELVKG---NKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIA 98
I + K GFS++ + G +YV + + G A G L+ GD+++
Sbjct: 16 TQSIHIEKSDTAADTYGFSLSSVEED----GIRRLYVNSVKETGLASKKG-LKAGDEILE 70
Query: 99 V 99
+
Sbjct: 71 I 71
Score = 30.8 bits (69), Expect = 0.071
Identities = 9/38 (23%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 122 IGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+ + G +YV + + G A G L+ GD+++ +
Sbjct: 35 LSSVEEDGIRRLYVNSVKETGLASKKG-LKAGDEILEI 71
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI,
signaling protein; 1.80A {Mus musculus}
Length = 106
Score = 39.7 bits (93), Expect = 4e-05
Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 8/57 (14%)
Query: 44 DIELVKG-NKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
+ +L K + GF + +G + I +G A+ G L GD+++ +
Sbjct: 4 ESKLSKQEGQNYGFFLRIE------KDTDGHLIRVIEEGSPAEKAG-LLDGDRVLRI 53
Score = 30.9 bits (70), Expect = 0.072
Identities = 8/31 (25%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 129 GDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+G + I +G A+ G L GD+++ +
Sbjct: 24 DTDGHLIRVIEEGSPAEKAG-LLDGDRVLRI 53
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ,
cell junction, cell adhesion, signaling protein,
nucleotide exchange factor; 1.30A {Homo sapiens} PDB:
3kze_A
Length = 94
Score = 38.4 bits (89), Expect = 9e-05
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 8/59 (13%)
Query: 44 DIELVKG---NKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
I + K GFS++ + G +YV + + G A G L+ GD+++ +
Sbjct: 9 SIHIEKSDTAADTYGFSLSSVEED----GIRRLYVNSVKETGLASKKG-LKAGDEILEI 62
Score = 29.9 bits (67), Expect = 0.11
Identities = 9/31 (29%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 129 GDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
G +YV + + G A G L+ GD+++ +
Sbjct: 33 GIRRLYVNSVKETGLASKKG-LKAGDEILEI 62
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Length = 82
Score = 37.3 bits (87), Expect = 2e-04
Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 14/63 (22%)
Query: 38 GNMKILDIELVKGNKG-LGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKL 96
G M I + K + G +GF G +T I+ +A +G L +
Sbjct: 1 GAMDPRTITMHKDSTGHVGFIFKNGK------------ITSIVKDSSAARNG-LLTEHNI 47
Query: 97 IAV 99
+
Sbjct: 48 CEI 50
Score = 26.5 bits (59), Expect = 1.7
Identities = 5/25 (20%), Positives = 11/25 (44%), Gaps = 1/25 (4%)
Query: 135 VTKIMDGGAAQVDGRLQVGDKLIAV 159
+T I+ +A +G L + +
Sbjct: 27 ITSIVKDSSAARNG-LLTEHNICEI 50
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1;
copper chaperone for superoxide dismutase, neuronal
adaptor, protein transport; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 90
Score = 32.8 bits (75), Expect = 0.010
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 13/62 (20%)
Query: 38 GNMKILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLI 97
GN+ + I LGFS+ G + +M GG A+ G ++VG ++I
Sbjct: 10 GNVTTVLIRRPDLRYQLGFSVQNG------------IICSLMRGGIAERGG-VRVGHRII 56
Query: 98 AV 99
+
Sbjct: 57 EI 58
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein
structure initiative; NMR
{Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Length = 125
Score = 29.8 bits (67), Expect = 0.19
Identities = 9/52 (17%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Query: 50 GNKGLGFSIAGGIGNQHIPGD--NGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
G+ + G N + G +G+ + ++ G A L G + ++
Sbjct: 2 GSSHHHHHHSSGRENLYFQGHQPDGVQIDSVVPGSPA--SKVLTPGLVIESI 51
Score = 29.1 bits (65), Expect = 0.31
Identities = 5/30 (16%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 130 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+G+ + ++ G A L G + ++
Sbjct: 24 PDGVQIDSVVPGSPA--SKVLTPGLVIESI 51
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell
membrane, hydrolase, membrane, protease, serine
protease, transmembrane; NMR {Bacillus subtilis}
Length = 91
Score = 29.2 bits (66), Expect = 0.21
Identities = 11/29 (37%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Query: 71 NGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
NGIY + +++ A G+++VGDK+I+
Sbjct: 1 NGIYASSVVENMPA--KGKIEVGDKIISA 27
Score = 29.2 bits (66), Expect = 0.21
Identities = 11/29 (37%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Query: 131 NGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
NGIY + +++ A G+++VGDK+I+
Sbjct: 1 NGIYASSVVENMPA--KGKIEVGDKIISA 27
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 1.70A {Listeria monocytogenes}
PDB: 2kjk_A 3i1e_A
Length = 100
Score = 28.8 bits (65), Expect = 0.36
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 71 NGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
+G+YV + D A L GD + +
Sbjct: 7 DGVYVMSVKDDVPA--ADVLHAGDLITEI 33
Score = 28.8 bits (65), Expect = 0.36
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 131 NGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
+G+YV + D A L GD + +
Sbjct: 7 DGVYVMSVKDDVPA--ADVLHAGDLITEI 33
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium; NMR {Geobacillus thermodenitrificans}
Length = 94
Score = 27.6 bits (62), Expect = 0.69
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 71 NGIYVTKIMDGGAAQVDGRLQVGDKLIAV 99
G+YV ++ A GRL+ GD++ A+
Sbjct: 5 KGVYVMSVLPNMPA--AGRLEAGDRIAAI 31
Score = 27.6 bits (62), Expect = 0.69
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 131 NGIYVTKIMDGGAAQVDGRLQVGDKLIAV 159
G+YV ++ A GRL+ GD++ A+
Sbjct: 5 KGVYVMSVLPNMPA--AGRLEAGDRIAAI 31
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.1 bits (62), Expect = 1.8
Identities = 15/86 (17%), Positives = 27/86 (31%), Gaps = 20/86 (23%)
Query: 54 LGFSIAGGIGNQ------HIPGDNGIYVTKIMDG--GAAQVDGRLQ-------VGDKLIA 98
GFSI + N H G+ G + + VDG+L+ + + +
Sbjct: 1657 YGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTS 1716
Query: 99 VRNSTSEDK-----RASPGIFLCNIA 119
+ + P + L A
Sbjct: 1717 YTFRSEKGLLSATQFTQPALTLMEKA 1742
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein,
PDZ domain, hydrolase, inner membrane, membrane,
metal-binding; HET: MLY MSE; 0.98A {Escherichia coli}
PDB: 3id2_A 3id3_A 3id4_A
Length = 91
Score = 26.3 bits (58), Expect = 2.0
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 75 VTKIMDGGAAQVDGRLQVGDKLIAVRNSTSED 106
+ + AA G LQ GD+++ V
Sbjct: 8 LENVQPNSAASXAG-LQAGDRIVXVDGQPLTQ 38
>1d5y_A ROB transcription factor; protein-DNA complex, DNA,
transcription/DNA complex; HET: DNA; 2.70A {Escherichia
coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Length = 292
Score = 27.5 bits (61), Expect = 2.1
Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 21/53 (39%)
Query: 14 LKVIALNVGISKFM---------------YVRRKKVTR------QGNMKILDI 45
L +A G SK+ Y+R +++++ ILDI
Sbjct: 22 LDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARPILDI 74
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia
cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Length = 321
Score = 26.8 bits (60), Expect = 3.6
Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 5/45 (11%)
Query: 81 GGAAQVDGRLQVGDKLIAV--RNSTSEDKRASPGIFLCNIAGGIG 123
GG+ GD + RN DKRA I +AGGIG
Sbjct: 81 GGSISFIDDTSEGDAVEVSLPRNEFPLDKRAKSFIL---VAGGIG 122
>3anu_A D-serine dehydratase; PLP-dependent fold-type III enzyme, PL
binding, zinc binding, lyase; HET: PLP; 1.90A {Gallus
gallus} PDB: 3anv_A* 3awn_A* 3awo_A*
Length = 376
Score = 25.9 bits (56), Expect = 6.7
Identities = 12/78 (15%), Positives = 20/78 (25%), Gaps = 7/78 (8%)
Query: 26 FMYVRRKKVTRQGNMKILDIELVKGNKGLGFSIAGGIGNQHIPGDNGIYVTKIMD----- 80
+ R ++D + + G G I G + + +
Sbjct: 264 RVLTRVIGHYAHRGQLLVDCGWAALSLHGAGAGQGPQGCAAIDGHPELRLVGLTQEHGLL 323
Query: 81 --GGAAQVDGRLQVGDKL 96
G GR VG L
Sbjct: 324 EHAGGQMDFGRFPVGSVL 341
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.141 0.409
Gapped
Lambda K H
0.267 0.0483 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,531,598
Number of extensions: 150722
Number of successful extensions: 892
Number of sequences better than 10.0: 1
Number of HSP's gapped: 642
Number of HSP's successfully gapped: 344
Length of query: 164
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 78
Effective length of database: 4,300,587
Effective search space: 335445786
Effective search space used: 335445786
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.8 bits)