BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12207
(69 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BYG|A Chain A, 2nd Pdz Domain Of Discs Large Homologue 2
Length = 117
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 36/51 (70%), Positives = 45/51 (88%)
Query: 7 YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSK 57
++IAGG+GNQHIPGDN IYVTKI+DGGAAQ DGRLQVGD+L+ V N ++ +
Sbjct: 39 FSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEE 89
>pdb|2FE5|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human
Dlg3
Length = 94
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 35/49 (71%), Positives = 45/49 (91%)
Query: 7 YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTV 55
++IAGGIGNQHIPGDN IY+TKI++GGAAQ DGRLQ+GD+L+AV N+ +
Sbjct: 18 FSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNL 66
>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
Length = 721
Score = 79.3 bits (194), Expect = 4e-16, Method: Composition-based stats.
Identities = 33/46 (71%), Positives = 42/46 (91%)
Query: 7 YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRN 52
++IAGG+GNQHIPGDN IYVTKI++GGAA DGRLQ+GDK++AV +
Sbjct: 169 FSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNS 214
Score = 50.4 bits (119), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/51 (47%), Positives = 33/51 (64%)
Query: 7 YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSK 57
++IAGG N HI D I++TKI+ GGAA DGRL+V D ++ V V +
Sbjct: 74 FSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVRE 124
Score = 32.0 bits (71), Expect = 0.097, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 6/44 (13%)
Query: 7 YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+NI GG + GI+++ I+ GG A + G L+ GD++++V
Sbjct: 322 FNIVGGEDGE------GIFISFILAGGPADLSGELRKGDQILSV 359
>pdb|4G69|A Chain A, Structure Of The Human Discs Large 1 Pdz2 - Adenomatous
Polyposis Coli Cytoskeletal Polarity Complex
Length = 100
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 34/46 (73%), Positives = 42/46 (91%)
Query: 7 YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRN 52
++IAGG+GNQHIPGDN IYVTKI++GGAA DG+LQ+GDKL+AV N
Sbjct: 24 FSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNN 69
>pdb|3RL8|A Chain A, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|B Chain B, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|C Chain C, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|D Chain D, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|E Chain E, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
Length = 105
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 34/46 (73%), Positives = 42/46 (91%)
Query: 7 YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRN 52
++IAGG+GNQHIPGDN IYVTKI++GGAA DG+LQ+GDKL+AV N
Sbjct: 26 FSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNN 71
>pdb|2OQS|A Chain A, Structure Of The HdlgSAP97 PDZ2 IN COMPLEX WITH HPV-18
Papillomavirus E6 Peptide
Length = 97
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 34/46 (73%), Positives = 42/46 (91%)
Query: 7 YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRN 52
++IAGG+GNQHIPGDN IYVTKI++GGAA DG+LQ+GDKL+AV N
Sbjct: 14 FSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNN 59
>pdb|2AWX|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
pdb|2AWX|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
Length = 105
Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 33/51 (64%), Positives = 45/51 (88%)
Query: 7 YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSK 57
++IAGG+GNQHIPGDN IYVTKI++GGAA DG+LQ+GDKL+AV + ++ +
Sbjct: 18 FSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEE 68
>pdb|2AWU|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
pdb|2AWU|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
Length = 105
Score = 75.9 bits (185), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 33/46 (71%), Positives = 42/46 (91%)
Query: 7 YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRN 52
++IAGG+GNQHIPGDN IYVTKI++GGAA DG+LQ+GDKL+AV +
Sbjct: 18 FSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNS 63
>pdb|2X7Z|A Chain A, Crystal Structure Of The Sap97 Pdz2 I342w C378a Mutant
Protein Domain
Length = 99
Score = 75.9 bits (185), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 33/46 (71%), Positives = 41/46 (89%)
Query: 7 YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRN 52
++IAGG+GNQH PGDN IYVTKI++GGAA DG+LQ+GDKL+AV N
Sbjct: 23 FSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNN 68
>pdb|2G2L|A Chain A, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
pdb|2G2L|B Chain B, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
Length = 105
Score = 75.9 bits (185), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 33/46 (71%), Positives = 42/46 (91%)
Query: 7 YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRN 52
++IAGG+GNQHIPGDN IYVTKI++GGAA DG+LQ+GDKL+AV +
Sbjct: 18 FSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNS 63
>pdb|4AMH|A Chain A, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
pdb|4AMH|B Chain B, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
Length = 106
Score = 75.9 bits (185), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 33/51 (64%), Positives = 43/51 (84%)
Query: 7 YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSK 57
++IAGG+GNQH PGDN IYVTKI++GGAA DG+LQ+GDKL+AV N + +
Sbjct: 17 FSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEE 67
>pdb|3GSL|A Chain A, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
pdb|3GSL|B Chain B, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
Length = 196
Score = 75.5 bits (184), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 33/46 (71%), Positives = 42/46 (91%)
Query: 7 YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRN 52
++IAGG+GNQHIPGDN IYVTKI++GGAA DGRLQ+GDK++AV +
Sbjct: 115 FSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNS 160
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 33/51 (64%)
Query: 7 YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSK 57
++IAGG N HI D I++TKI+ GGAA DGRL+V D ++ V V +
Sbjct: 20 FSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVRE 70
>pdb|2I0L|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C-
Terminal Peptide Of Hpv18 E6.
pdb|2I0L|B Chain B, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 84
Score = 75.5 bits (184), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 33/46 (71%), Positives = 42/46 (91%)
Query: 7 YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRN 52
++IAGG+GNQHIPGDN IYVTKI++GGAA DG+LQ+GDKL+AV +
Sbjct: 13 FSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNS 58
>pdb|2KA9|A Chain A, Solution Structure Of Psd-95 Pdz12 Complexed With Cypin
Peptide
Length = 189
Score = 75.1 bits (183), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 33/44 (75%), Positives = 41/44 (93%)
Query: 7 YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
++IAGG+GNQHIPGDN IYVTKI++GGAA DGRLQ+GDK++AV
Sbjct: 112 FSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAV 155
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 33/51 (64%)
Query: 7 YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSK 57
++IAGG N HI D I++TKI+ GGAA DGRL+V D ++ V V +
Sbjct: 17 FSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVRE 67
>pdb|3ZRT|A Chain A, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|B Chain B, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|C Chain C, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|D Chain D, Crystal Structure Of Human Psd-95 Pdz1-2
Length = 199
Score = 75.1 bits (183), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 33/44 (75%), Positives = 41/44 (93%)
Query: 7 YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
++IAGG+GNQHIPGDN IYVTKI++GGAA DGRLQ+GDK++AV
Sbjct: 122 FSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAV 165
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 33/51 (64%)
Query: 7 YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSK 57
++IAGG N HI D I++TKI+ GGAA DGRL+V D ++ V V +
Sbjct: 27 FSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVRE 77
>pdb|1QLC|A Chain A, Solution Structure Of The Second Pdz Domain Of
Postsynaptic Density-95
Length = 95
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 33/46 (71%), Positives = 42/46 (91%)
Query: 7 YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRN 52
++IAGG+GNQHIPGDN IYVTKI++GGAA DGRLQ+GDK++AV +
Sbjct: 18 FSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNS 63
>pdb|2AWW|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
With C-Terminal Glur-A Peptide
pdb|2AWW|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
With C-Terminal Glur-A Peptide
Length = 105
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 32/46 (69%), Positives = 41/46 (89%)
Query: 7 YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRN 52
++IAGG+GNQHIPGDN IYVT I++GGAA DG+LQ+GDKL+AV +
Sbjct: 18 FSIAGGVGNQHIPGDNSIYVTSIVEGGAAHKDGKLQIGDKLLAVNS 63
>pdb|2I1N|A Chain A, Crystal Structure Of The 1st Pdz Domain Of Human Dlg3
pdb|2I1N|B Chain B, Crystal Structure Of The 1st Pdz Domain Of Human Dlg3
Length = 102
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 37/51 (72%)
Query: 7 YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSK 57
++IAGGI N H+P D GI++TKI+ GGAA +DGRL V D ++ V VS+
Sbjct: 19 FSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSE 69
>pdb|2JIN|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2
Binding Protein
Length = 102
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 34/44 (77%)
Query: 7 YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+NI GG Q++ D+GIYV++I + GAA +DGRLQ GDK+++V
Sbjct: 24 FNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSV 67
>pdb|2JIK|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2
Binding Protein
pdb|2JIK|B Chain B, Crystal Structure Of Pdz Domain Of Synaptojanin-2
Binding Protein
Length = 101
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 34/44 (77%)
Query: 7 YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+NI GG Q++ D+GIYV++I + GAA +DGRLQ GDK+++V
Sbjct: 22 FNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSV 65
>pdb|2ENO|A Chain A, Solution Structure Of The Pdz Domain From Human
Synaptojanin 2 Binding Protein
Length = 120
Score = 53.1 bits (126), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 34/44 (77%)
Query: 7 YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+NI GG Q++ D+GIYV++I + GAA +DGRLQ GDK+++V
Sbjct: 32 FNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSV 75
>pdb|2WL7|A Chain A, Crystal Structure Of The Psd93 Pdz1 Domain
Length = 102
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 35/51 (68%)
Query: 7 YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSK 57
++IAGG N HI D GI++TKI+ GGAA DGRL+V D ++ V VS+
Sbjct: 24 FSIAGGTDNPHIGDDPGIFITKIIPGGAAAEDGRLRVNDCILRVNEVDVSE 74
>pdb|1ZOK|A Chain A, Pdz1 Domain Of Synapse Associated Protein 97
Length = 93
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 34/49 (69%)
Query: 7 YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTV 55
++IAGG N HI D+ I++TKI+ GGAA DGRL+V D ++ V + V
Sbjct: 16 FSIAGGTDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRVNEADV 64
>pdb|1RGR|A Chain A, Cyclic Peptides Targeting Pdz Domains Of Psd-95:
Structural Basis For Enhanced Affinity And Enzymatic
Stability
Length = 99
Score = 48.5 bits (114), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 33/51 (64%)
Query: 7 YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSK 57
++IAGG N HI D I++TKI+ GGAA DGRL+V D ++ V V +
Sbjct: 16 FSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVRE 66
>pdb|1KEF|A Chain A, Pdz1 Of Sap90
Length = 93
Score = 48.5 bits (114), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 33/51 (64%)
Query: 7 YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSK 57
++IAGG N HI D I++TKI+ GGAA DGRL+V D ++ V V +
Sbjct: 16 FSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVRE 66
>pdb|1IU0|A Chain A, The First Pdz Domain Of Psd-95
pdb|1IU2|A Chain A, The First Pdz Domain Of Psd-95
Length = 91
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 33/51 (64%)
Query: 7 YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSK 57
++IAGG N HI D I++TKI+ GGAA DGRL+V D ++ V V +
Sbjct: 17 FSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVRE 67
>pdb|3RL7|B Chain B, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|A Chain A, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|C Chain C, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|D Chain D, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|E Chain E, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|F Chain F, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
Length = 107
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 37/57 (64%), Gaps = 5/57 (8%)
Query: 7 YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIA-----VRNSTVSKG 58
++IAGG N HI D+ I++TKI+ GGAA DGRL+V D ++ VR+ T SK
Sbjct: 26 FSIAGGTDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRVNEVDVRDVTHSKA 82
>pdb|1WHA|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Scribble (Kiaa0147 Protein)
Length = 105
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 34/45 (75%), Gaps = 1/45 (2%)
Query: 7 YNIAGGIGNQ-HIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
++IAGG G+ + GD GI+V++I +GGAA G LQVGD+++++
Sbjct: 22 FSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSI 66
>pdb|2FNE|A Chain A, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
pdb|2FNE|B Chain B, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
pdb|2FNE|C Chain C, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
Length = 117
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 7 YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVS 56
++I GG G+ H GD IYV + GAA DGRL+ GD++IAV ++
Sbjct: 40 FSIVGGYGSPH--GDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLE 87
>pdb|2K1Z|A Chain A, Solution Structure Of Par-3 Pdz3
pdb|2K20|A Chain A, Solution Structure Of Par-3 Pdz3 In Complex With Pten
Peptide
Length = 104
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/30 (63%), Positives = 24/30 (80%)
Query: 21 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
D GI+V I++GGAA DGRL+V D+LIAV
Sbjct: 35 DLGIFVKSIINGGAASKDGRLRVNDQLIAV 64
>pdb|2KOH|A Chain A, Nmr Structure Of Mouse Par3-Pdz3 In Complex With
Ve-Cadherin C-Terminus
Length = 111
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/30 (63%), Positives = 24/30 (80%)
Query: 21 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
D GI+V I++GGAA DGRL+V D+LIAV
Sbjct: 38 DLGIFVKSIINGGAASKDGRLRVNDQLIAV 67
>pdb|1UJU|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Human
Scribble (Kiaa0147 Protein)
Length = 111
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 11 GGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTV 55
G GN P D GI+++K+ GAA DGRL+VG +L+ V ++
Sbjct: 33 GHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSL 77
>pdb|3CBX|A Chain A, The Dvl2 Pdz Domain In Complex With The C1 Inhibitory
Peptide
pdb|3CBX|B Chain B, The Dvl2 Pdz Domain In Complex With The C1 Inhibitory
Peptide
Length = 105
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 13 IGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRN 52
+G + GD GIY+ IM GGA DGR++ GD L+ V +
Sbjct: 24 VGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVND 63
>pdb|1T2M|A Chain A, Solution Structure Of The Pdz Domain Of Af-6
Length = 101
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 23 GIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
GIYV ++ GGAA VDGRL GD+L++V
Sbjct: 33 GIYVKSVVKGGAADVDGRLAAGDQLLSV 60
>pdb|2AIN|A Chain A, Solution Structure Of The Af-6 Pdz Domain Complexed With
The C-Terminal Peptide From The Bcr Protein
Length = 93
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 23 GIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
GIYV ++ GGAA VDGRL GD+L++V
Sbjct: 33 GIYVKSVVKGGAADVDGRLAAGDQLLSV 60
>pdb|3AXA|A Chain A, Crystal Structure Of Afadin Pdz Domain In Complex With
The C-Terminal Peptide From Nectin-3
pdb|3AXA|B Chain B, Crystal Structure Of Afadin Pdz Domain In Complex With
The C-Terminal Peptide From Nectin-3
Length = 106
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 23 GIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
GIYV ++ GGAA VDGRL GD+L++V
Sbjct: 39 GIYVKSVVKGGAADVDGRLAAGDQLLSV 66
>pdb|1XZ9|A Chain A, Structure Of Af-6 Pdz Domain
pdb|2EXG|A Chain A, Making Protein-protein Interactions Drugable: Discovery
Of Low-molecular-weight Ligands For The Af6 Pdz Domain
Length = 101
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 23 GIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
GIYV ++ GGAA VDGRL GD+L++V
Sbjct: 39 GIYVKSVVKGGAADVDGRLAAGDQLLSV 66
>pdb|3CBZ|A Chain A, The Dvl2 Pdz Domain In Complex With The N2 Inhibitory
Peptide
Length = 108
Score = 37.7 bits (86), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 13 IGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRN 52
+G + GD GIY+ IM GGA DGR++ GD L+ V +
Sbjct: 24 VGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVND 63
>pdb|2REY|A Chain A, Crystal Structure Of The Pdz Domain Of Human Dishevelled
2 (Homologous To Drosophila Dsh)
Length = 100
Score = 37.7 bits (86), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 13 IGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRN 52
+G + GD GIY+ IM GGA DGR++ GD L+ V +
Sbjct: 24 VGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVND 63
>pdb|1WG6|A Chain A, Solution Structure Of Pdz Domain In Protein Xp_110852
Length = 127
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 21 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTV 55
D GI++ I+ GGAA DGRL++ D+LIAV T+
Sbjct: 54 DLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETL 88
>pdb|3CC0|A Chain A, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
pdb|3CC0|B Chain B, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
pdb|3CC0|C Chain C, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
Length = 108
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 13 IGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRN 52
+G + GD GIY+ IM GGA DGR++ GD L+ V +
Sbjct: 24 VGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVND 63
>pdb|3CBY|A Chain A, The Dvl2 Pdz Domain In Complex With The N1 Inhibitory
Peptide
pdb|3CBY|B Chain B, The Dvl2 Pdz Domain In Complex With The N1 Inhibitory
Peptide
Length = 108
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 13 IGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRN 52
+G + GD GIY+ IM GGA DGR++ GD L+ V +
Sbjct: 24 VGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVND 63
>pdb|1MC7|A Chain A, Solution Structure Of Mdvl1 Pdz Domain
Length = 95
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 13 IGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRN 52
+G + GD GIY+ IM GGA DGR++ GD L+ V +
Sbjct: 17 VGQSNDRGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVND 56
>pdb|2KAW|A Chain A, Nmr Structure Of The Mdvl1 Pdz Domain In Complex With
Its Inhibitor
Length = 90
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 13 IGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRN 52
+G + GD GIY+ IM GGA DGR++ GD L+ V +
Sbjct: 20 VGQSNDRGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVND 59
>pdb|2IWN|A Chain A, 3rd Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
Length = 97
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
IAG IG++ + +GI+V I A + DGR+Q+GD++IAV
Sbjct: 20 TIAGYIGDKKLE-PSGIFVKSITKSSAVEHDGRIQIGDQIIAV 61
>pdb|3HVQ|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Neurabin
pdb|3HVQ|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Neurabin
Length = 170
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 22/28 (78%)
Query: 23 GIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
GI+V + +GGAAQ DGR+QV D+++ V
Sbjct: 112 GIFVKTVTEGGAAQRDGRIQVNDQIVEV 139
>pdb|2DMZ|A Chain A, Solution Structure Of The Third Pdz Domain Of Human
Inad- Like Protein
Length = 129
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 9 IAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
I G +G H +GIYV ++ G AA +G +QV DK++AV
Sbjct: 33 IVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAV 74
>pdb|1WF8|A Chain A, Solution Structure Of The Pdz Domain Of
SpinophilinNEURABINII PROTEIN
Length = 107
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 22/28 (78%)
Query: 23 GIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
GI+V + +GGAAQ DGR+QV D+++ V
Sbjct: 41 GIFVKTVTEGGAAQRDGRIQVNDQIVEV 68
>pdb|1UHP|A Chain A, Solution Structure Of Rsgi Ruh-005, A Pdz Domain In
Human Cdna, Kiaa1095
Length = 107
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 7 YNIAGG---IGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSK 57
+NI GG + N GI+V+KI+D G A +G LQ+ D++I V +S+
Sbjct: 23 FNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSR 76
>pdb|2FN5|A Chain A, Nmr Structure Of The Neurabin Pdz Domain (502-594)
Length = 94
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 22/28 (78%)
Query: 23 GIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
GI+V + +GGAAQ DGR+QV D+++ V
Sbjct: 36 GIFVKTVTEGGAAQRDGRIQVNDQIVEV 63
>pdb|2QG1|A Chain A, Crystal Structure Of The 11th Pdz Domain Of Mpdz (Mupp1)
Length = 92
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 21 DNGIYVTKIMDGGAAQVDGRLQVGDKLIA-----VRNSTVSKGPTLGYCETG 67
D G++V+ I+ GG A DGRL GD+++ VRN+T L C G
Sbjct: 28 DTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKCSLG 79
>pdb|3DIW|A Chain A, C-Terminal Beta-Catenin Bound Tip-1 Structure
pdb|3DIW|B Chain B, C-Terminal Beta-Catenin Bound Tip-1 Structure
pdb|3DJ1|A Chain A, Crystal Structure Of Tip-1 Wild Type
pdb|3DJ1|B Chain B, Crystal Structure Of Tip-1 Wild Type
Length = 124
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 24/30 (80%), Gaps = 1/30 (3%)
Query: 21 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
D GIYVT++ +GG A++ G LQ+GDK++ V
Sbjct: 52 DKGIYVTRVSEGGPAEIAG-LQIGDKIMQV 80
>pdb|3GJ9|A Chain A, Crystal Structure Of Tip-1 In Complex With C-Terminal Of
Kir2.3
pdb|3GJ9|B Chain B, Crystal Structure Of Tip-1 In Complex With C-Terminal Of
Kir2.3
pdb|2L4S|A Chain A, Promiscuous Binding At The Crossroads Of Numerous Cancer
Pathways: Insight From The Binding Of Gip With
Glutaminase L
pdb|2L4T|A Chain A, GipGLUTAMINASE L PEPTIDE COMPLEX
Length = 124
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 24/30 (80%), Gaps = 1/30 (3%)
Query: 21 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
D GIYVT++ +GG A++ G LQ+GDK++ V
Sbjct: 52 DKGIYVTRVSEGGPAEIAG-LQIGDKIMQV 80
>pdb|2KG2|A Chain A, Solution Structure Of A Pdz Protein
Length = 124
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 24/30 (80%), Gaps = 1/30 (3%)
Query: 21 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
D GIYVT++ +GG A++ G LQ+GDK++ V
Sbjct: 52 DKGIYVTRVSEGGPAEIAG-LQIGDKIMQV 80
>pdb|3DJ3|A Chain A, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|B Chain B, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|C Chain C, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|D Chain D, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
Length = 113
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 24/30 (80%), Gaps = 1/30 (3%)
Query: 21 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
D GIYVT++ +GG A++ G LQ+GDK++ V
Sbjct: 53 DKGIYVTRVSEGGPAEIAG-LQIGDKIMQV 81
>pdb|2VZ5|A Chain A, Structure Of The Pdz Domain Of Tax1 (Human T-Cell
Leukemia Virus Type I) Binding Protein 3
Length = 139
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 24/30 (80%), Gaps = 1/30 (3%)
Query: 21 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
D GIYVT++ +GG A++ G LQ+GDK++ V
Sbjct: 63 DKGIYVTRVSEGGPAEIAG-LQIGDKIMQV 91
>pdb|3SFJ|A Chain A, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1)
Pdz Domain Bound To Ical36 Inhibitor Peptide
pdb|3SFJ|C Chain C, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1)
Pdz Domain Bound To Ical36 Inhibitor Peptide
Length = 104
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 24/30 (80%), Gaps = 1/30 (3%)
Query: 21 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
D GIYVT++ +GG A++ G LQ+GDK++ V
Sbjct: 44 DKGIYVTRVSEGGPAEIAG-LQIGDKIMQV 72
>pdb|3FY5|A Chain A, Dishevelled Pdz Domain Homodimer
pdb|3FY5|B Chain B, Dishevelled Pdz Domain Homodimer
Length = 91
Score = 35.0 bits (79), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 13 IGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRN 52
+G + GD GIY+ I GGA DGR++ GD L+ V +
Sbjct: 18 VGQSNERGDGGIYIGSIXKGGAVAADGRIEPGDXLLQVND 57
>pdb|4E3B|A Chain A, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1)
Pdz Domain Bound To Ical36-L (Ansrwptsil) Peptide
pdb|4E3B|B Chain B, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1)
Pdz Domain Bound To Ical36-L (Ansrwptsil) Peptide
Length = 102
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 24/30 (80%), Gaps = 1/30 (3%)
Query: 21 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
D GIYVT++ +GG A++ G LQ+GDK++ V
Sbjct: 42 DKGIYVTRVSEGGPAEIAG-LQIGDKIMQV 70
>pdb|2F0A|A Chain A, Crystal Structure Of Monomeric Uncomplexed Form Of
Xenopus Dishevelled Pdz Domain
pdb|2F0A|B Chain B, Crystal Structure Of Monomeric Uncomplexed Form Of
Xenopus Dishevelled Pdz Domain
pdb|2F0A|C Chain C, Crystal Structure Of Monomeric Uncomplexed Form Of
Xenopus Dishevelled Pdz Domain
pdb|2F0A|D Chain D, Crystal Structure Of Monomeric Uncomplexed Form Of
Xenopus Dishevelled Pdz Domain
Length = 98
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 13 IGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRN 52
+G + GD GIY+ I GGA DGR++ GD L+ V +
Sbjct: 20 VGQSNERGDGGIYIGSIXKGGAVAADGRIEPGDXLLQVND 59
>pdb|3EGG|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Spinophilin
pdb|3EGG|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Spinophilin
Length = 170
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 23 GIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTV 55
GI+V + +GGAA DGR+QV D L+ V +++
Sbjct: 112 GIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSL 144
>pdb|3EGH|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1), The Pp1 Binding And Pdz Domains Of
Spinophilin And The Small Natural Molecular Toxin
Nodularin-R
pdb|3EGH|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1), The Pp1 Binding And Pdz Domains Of
Spinophilin And The Small Natural Molecular Toxin
Nodularin-R
Length = 170
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 23 GIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTV 55
GI+V + +GGAA DGR+QV D L+ V +++
Sbjct: 112 GIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSL 144
>pdb|1L6O|A Chain A, Xenopus Dishevelled Pdz Domain
pdb|1L6O|B Chain B, Xenopus Dishevelled Pdz Domain
pdb|1L6O|C Chain C, Xenopus Dishevelled Pdz Domain
Length = 95
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 13 IGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRN 52
+G + GD GIY+ I GGA DGR++ GD L+ V +
Sbjct: 20 VGQSNERGDGGIYIGSIXKGGAVAADGRIEPGDXLLQVND 59
>pdb|2G5M|B Chain B, Spinophilin Pdz Domain
Length = 113
Score = 34.7 bits (78), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 23 GIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTV 55
GI+V + +GGAA DGR+QV D L+ V +++
Sbjct: 36 GIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSL 68
>pdb|1GM1|A Chain A, Second Pdz Domain (Pdz2) Of Ptp-Bl
Length = 94
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 23 GIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
GIYV I+ GAA+ DGR+ GD+++AV
Sbjct: 33 GIYVKAIIPKGAAESDGRIHKGDRVLAV 60
>pdb|1VJ6|A Chain A, Pdz2 From Ptp-Bl In Complex With The C-Terminal Ligand
From The Apc Protein
Length = 102
Score = 33.5 bits (75), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 23 GIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
GIYV I+ GAA+ DGR+ GD+++AV
Sbjct: 41 GIYVKAIIPKGAAESDGRIHKGDRVLAV 68
>pdb|1OZI|A Chain A, The Alternatively Spliced Pdz2 Domain Of Ptp-Bl
Length = 99
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 23 GIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
GIYV I+ GAA+ DGR+ GD+++AV
Sbjct: 38 GIYVKAIIPKGAAESDGRIHKGDRVLAV 65
>pdb|1Q7X|A Chain A, Solution Structure Of The Alternatively Spliced Pdz2
Domain (Pdz2b) Of Ptp-Bas (Hptp1e)
Length = 108
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 23 GIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
GIYV ++ GAA+ DGR+ GD+++AV
Sbjct: 43 GIYVKAVIPQGAAESDGRIHKGDRVLAV 70
>pdb|3PDZ|A Chain A, Solution Structure Of The Pdz2 Domain From Human
Phosphatase Hptp1e
pdb|3LNX|A Chain A, Second Pdz Domain From Human Ptp1e
pdb|3LNX|B Chain B, Second Pdz Domain From Human Ptp1e
pdb|3LNX|C Chain C, Second Pdz Domain From Human Ptp1e
pdb|3LNX|D Chain D, Second Pdz Domain From Human Ptp1e
pdb|3LNX|E Chain E, Second Pdz Domain From Human Ptp1e
pdb|3LNX|F Chain F, Second Pdz Domain From Human Ptp1e
pdb|3LNY|A Chain A, Second Pdz Domain From Human Ptp1e In Complex With
Ra-Gef2 Peptide
Length = 96
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 23 GIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
GIYV ++ GAA+ DGR+ GD+++AV
Sbjct: 34 GIYVKAVIPQGAAESDGRIHKGDRVLAV 61
>pdb|1UM1|A Chain A, Solution Structure Of Rsgi Ruh-007, Pdz Domain In Human
Cdna
Length = 110
Score = 33.5 bits (75), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 20 GDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTV 55
G G+Y+ ++ G A DGRL +GD+++ V S++
Sbjct: 34 GAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSL 69
>pdb|2KOJ|A Chain A, Solution Structure Of Mouse Par-3 Pdz2 (Residues
450-558)
Length = 111
Score = 33.1 bits (74), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 21/33 (63%)
Query: 18 IPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
I G IYV I+ GAA DGRL+ GD+LI V
Sbjct: 35 IGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEV 67
>pdb|1D5G|A Chain A, Solution Structure Of The Pdz2 Domain From Human
Phosphatase Hptp1e Complexed With A Peptide
Length = 96
Score = 33.1 bits (74), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 23 GIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
GIYV ++ GAA+ DGR+ GD+++AV
Sbjct: 34 GIYVKAVIPQGAAESDGRIHKGDRVLAV 61
>pdb|2KOM|A Chain A, Solution Structure Of Humar Par-3b Pdz2 (Residues
451-549)
Length = 121
Score = 33.1 bits (74), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 21/33 (63%)
Query: 18 IPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
I G IYV I+ GAA DGRL+ GD+LI V
Sbjct: 54 IGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEV 86
>pdb|2OGP|A Chain A, Solution Structure Of The Second Pdz Domain Of Par-3
Length = 97
Score = 32.7 bits (73), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 21/33 (63%)
Query: 18 IPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
I G IYV I+ GAA DGRL+ GD+LI V
Sbjct: 29 IGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEV 61
>pdb|3CH8|A Chain A, The Crystal Structure Of Pdz-Fibronectin Fusion Protein
Length = 195
Score = 32.7 bits (73), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 5/45 (11%)
Query: 7 YNIAGGIG---NQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLI 48
++I+GG+G N P D+GI+VT++ G A LQ GDK+I
Sbjct: 7 FSISGGVGGRGNPFRPDDDGIFVTRVQPEGPA--SKLLQPGDKII 49
>pdb|1MFG|A Chain A, The Structure Of Erbin Pdz Domain Bound To The Carboxy-
Terminal Tail Of The Erbb2 Receptor
pdb|1MFL|A Chain A, The Structure Of Erbin Pdz Domain Bound To The Carboxy-
Terminal Tail Of The Erbb2 Receptor
Length = 95
Score = 32.7 bits (73), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 5/45 (11%)
Query: 7 YNIAGGIG---NQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLI 48
++I+GG+G N P D+GI+VT++ G A LQ GDK+I
Sbjct: 17 FSISGGVGGRGNPFRPDDDGIFVTRVQPEGPA--SKLLQPGDKII 59
>pdb|2QBW|A Chain A, The Crystal Structure Of Pdz-Fibronectin Fusion Protein
Length = 195
Score = 32.7 bits (73), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 5/45 (11%)
Query: 7 YNIAGGIG---NQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLI 48
++I+GG+G N P D+GI+VT++ G A LQ GDK+I
Sbjct: 6 FSISGGVGGRGNPFRPDDDGIFVTRVQPEGPA--SKLLQPGDKII 48
>pdb|2JRE|A Chain A, C60-1, A Pdz Domain Designed Using Statistical Coupling
Analysis
Length = 108
Score = 32.7 bits (73), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 12 GIGNQHIPGD-NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTV 55
G+ +Q G+ GIYV ++ G AA +DGR++ DK++ V + V
Sbjct: 33 GMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNV 77
>pdb|2H3L|A Chain A, Crystal Structure Of Erbin Pdz
pdb|2H3L|B Chain B, Crystal Structure Of Erbin Pdz
pdb|1N7T|A Chain A, Erbin Pdz Domain Bound To A Phage-Derived Peptide
Length = 103
Score = 32.7 bits (73), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 5/45 (11%)
Query: 7 YNIAGGIG---NQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLI 48
++I+GG+G N P D+GI+VT++ G A LQ GDK+I
Sbjct: 25 FSISGGVGGRGNPFRPDDDGIFVTRVQPEGPA--SKLLQPGDKII 67
>pdb|2O2T|A Chain A, The Crystal Structure Of The 1st Pdz Domain Of Mpdz
pdb|2O2T|B Chain B, The Crystal Structure Of The 1st Pdz Domain Of Mpdz
Length = 117
Score = 32.3 bits (72), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 20 GDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
G+ GI+V +I +G A DGRL+ D+++A+
Sbjct: 47 GELGIFVQEIQEGSVAHRDGRLKETDQILAI 77
>pdb|2Q9V|A Chain A, Crystal Structure Of The C890s Mutant Of The 4th Pdz
Domain Of Human Membrane Associated Guanylate Kinase
Length = 90
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 19 PGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTV 55
PG+ IY+ I+ GAA DGRL+ GD+LI+V + V
Sbjct: 25 PGEP-IYIGHIVPLGAADTDGRLRSGDELISVDGTPV 60
>pdb|3JXT|A Chain A, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
pdb|3JXT|B Chain B, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
Length = 104
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 11/53 (20%)
Query: 7 YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV-----RNST 54
+NI GG + GI+V+ I+ GG A + G L+ GD++++V RN+T
Sbjct: 27 FNIVGGEDGE------GIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNAT 73
>pdb|2HE2|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
pdb|2HE2|B Chain B, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
Length = 102
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 6/44 (13%)
Query: 7 YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+NI GG + GI+V+ I+ GG A + G LQ GD++++V
Sbjct: 18 FNIVGGEDGE------GIFVSFILAGGPADLSGELQRGDQILSV 55
>pdb|1UM7|A Chain A, Solution Structure Of The Third Pdz Domain Of Synapse-
Associated Protein 102
Length = 113
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 11/53 (20%)
Query: 7 YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV-----RNST 54
+NI GG + GI+V+ I+ GG A + G L+ GD++++V RN+T
Sbjct: 30 FNIVGGEDGE------GIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNAT 76
>pdb|1PDR|A Chain A, Crystal Structure Of The Third Pdz Domain From The Human
Homolog Of Discs Large Protein
Length = 99
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 6/44 (13%)
Query: 7 YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+NI GG + GI+++ I+ GG A + G L+ GD++I+V
Sbjct: 22 FNIVGGEDGE------GIFISFILAGGPADLSGELRKGDRIISV 59
>pdb|2I0I|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I0I|B Chain B, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I0I|C Chain C, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 85
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 6/44 (13%)
Query: 7 YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+NI GG + GI+++ I+ GG A + G L+ GD++I+V
Sbjct: 19 FNIVGGEDGE------GIFISFILAGGPADLSGELRKGDRIISV 56
>pdb|2DKR|A Chain A, Solution Structure Of The Pdz Domain From Human Lin-7
Homolog B
Length = 93
Score = 30.4 bits (67), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 5/49 (10%)
Query: 7 YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTV 55
+NI GG Q+ P IY+++++ GG A G L+ GD+L++V +V
Sbjct: 20 FNIMGGK-EQNSP----IYISRVIPGGVADRHGGLKRGDQLLSVNGVSV 63
>pdb|1WI4|A Chain A, Solution Structure Of The Pdz Domain Of Syntaxin Binding
Protein 4
Length = 109
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTV 55
I GGI P +Y+ +++ GG DGRL+ GD+L+++ ++
Sbjct: 30 KILGGINRNEGPL---VYIHEVIPGGDCYKDGRLKPGDQLVSINKESM 74
>pdb|2DLU|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Inad- Like Protein
Length = 111
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 22 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTV 55
+G+ V I+ GG A DGRLQ GD ++ + + V
Sbjct: 38 SGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNV 71
>pdb|2DM8|A Chain A, Solution Structure Of The Eighth Pdz Domain Of Human
Inad- Like Protein
Length = 116
Score = 29.6 bits (65), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 5/38 (13%)
Query: 22 NGIYVTKIMDGGAAQVDGRLQVGDKLIAV-----RNST 54
N I + ++ + GAA DGRL GD+++ V RNS+
Sbjct: 43 NAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSS 80
>pdb|1TP3|A Chain A, Pdz3 Domain Of Psd-95 Protein Complexed With Kketpv
Peptide Ligand
pdb|1TP5|A Chain A, Crystal Structure Of Pdz3 Domain Of Psd-95 Protein
Complexed With A Peptide Ligand Kketwv
pdb|1TQ3|A Chain A, Higher Resolution Crystal Structure Of The Third Pdz
Domain Of Post Synaptic Psd-95 Protein
Length = 119
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 6/44 (13%)
Query: 7 YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+NI GG + GI+++ I+ GG A + G L+ GD++++V
Sbjct: 29 FNIVGGEDGE------GIFISFILAGGPADLSGELRKGDQILSV 66
>pdb|3K82|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 98
Score = 29.3 bits (64), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 6/44 (13%)
Query: 7 YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+NI GG + GI+++ I+ GG A + G L+ GD++++V
Sbjct: 21 FNIVGGEXGE------GIFISFILAGGPADLSGELRKGDQILSV 58
>pdb|2VWR|A Chain A, Crystal Structure Of The Second Pdz Domain Of
Numb-Binding Protein 2
Length = 95
Score = 29.3 bits (64), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 23 GIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
G+++ +++GG A DGRL D+++A+
Sbjct: 30 GVFILDLLEGGLAAQDGRLSSNDRVLAI 57
>pdb|3I4W|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|B Chain B, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|C Chain C, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|D Chain D, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 104
Score = 29.3 bits (64), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 6/44 (13%)
Query: 7 YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+NI GG + GI+++ I+ GG A + G L+ GD++++V
Sbjct: 26 FNIVGGEXGE------GIFISFILAGGPADLSGELRKGDQILSV 63
>pdb|3SUZ|A Chain A, Crystal Structure Of Rat Mint2 Ppc
Length = 287
Score = 29.3 bits (64), Expect = 0.60, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 24 IYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTLGYCE 65
+ + +M+GG A G+L +GD+++++ N T G L C+
Sbjct: 218 VILANMMNGGPAARSGKLSIGDQIMSI-NGTSLVGLPLATCQ 258
>pdb|1X45|A Chain A, Solution Structure Of The First Pdz Domain Of Amyloid
Beta A4 Precursor Protein-Binding Family A, Member 1
Length = 98
Score = 29.3 bits (64), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 24 IYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTLGYCET 66
+ + +M GG A+ G+L +GD+++++ N T G L C++
Sbjct: 35 VIIANMMHGGPAEKSGKLNIGDQIMSI-NGTSLVGLPLSTCQS 76
>pdb|1BE9|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95 In
Complex With A C-Terminal Peptide Derived From Cript.
pdb|1BFE|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95
Length = 119
Score = 28.9 bits (63), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 6/44 (13%)
Query: 7 YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+NI GG + GI+++ I+ GG A + G L+ GD++++V
Sbjct: 29 FNIIGGEDGE------GIFISFILAGGPADLSGELRKGDQILSV 66
>pdb|1UJD|A Chain A, Solution Structure Of Rsgi Ruh-003, A Pdz Domain Of
Hypothetical Kiaa0559 Protein From Human Cdna
Length = 117
Score = 28.9 bits (63), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Query: 13 IGNQHIPGDNG---IYVTKIMDGGAAQVDGRLQVGDKLI 48
+G + IPG +G Y+ KI+ GG+A+ G+L G +++
Sbjct: 37 VGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVL 75
>pdb|1U3B|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 185
Score = 28.9 bits (63), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 24 IYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTLGYCET 66
+ + +M GG A+ G+L +GD+++++ N T G L C++
Sbjct: 31 VIIANMMHGGPAEKSGKLNIGDQIMSI-NGTSLVGLPLSTCQS 72
>pdb|1P1D|A Chain A, Structural Insights Into The Inter-Domain Chaperoning Of
Tandem Pdz Domains In Glutamate Receptor Interacting
Proteins
Length = 196
Score = 28.9 bits (63), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 19 PGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRN 52
PGD + ++ I G A G L++GDKL+A+ N
Sbjct: 133 PGD-PLVISDIKKGSVAHRTGTLELGDKLLAIDN 165
>pdb|1U38|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
pdb|1U37|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 89
Score = 28.9 bits (63), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 24 IYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTLGYCET 66
+ + +M GG A+ G+L +GD+++++ N T G L C++
Sbjct: 31 VIIANMMHGGPAEKSGKLNIGDQIMSI-NGTSLVGLPLSTCQS 72
>pdb|2DAZ|A Chain A, Solution Structure Of The 7th Pdz Domain Of Inad-Like
Protein
Length = 124
Score = 28.9 bits (63), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 24 IYVTKIMDGGAAQVDGRLQVGDKLIAVRN 52
I+V I G A DGR+++GD+L+ + N
Sbjct: 53 IFVVGINPEGPAAADGRMRIGDELLEINN 81
>pdb|3B76|A Chain A, Crystal Structure Of The Third Pdz Domain Of Human
Ligand-of-numb Protein-x (lnx1) In Complex With The
C-terminal Peptide From The Coxsackievirus And
Adenovirus Receptor
pdb|3B76|B Chain B, Crystal Structure Of The Third Pdz Domain Of Human
Ligand-of-numb Protein-x (lnx1) In Complex With The
C-terminal Peptide From The Coxsackievirus And
Adenovirus Receptor
Length = 118
Score = 28.5 bits (62), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 14 GNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
G H D IYV + GG DGR++ GD L+ V
Sbjct: 45 GASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNV 81
>pdb|2EAQ|A Chain A, Crystal Structure Of Pdz Domain Of Kiaa0858 (Lim),
Ms0793 From Homo Sapiens
Length = 90
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 23 GIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTLGYCE 65
GI+V + G A+ +LQV D++IA+ N+ S + + E
Sbjct: 29 GIFVASVEAGSPAEF-SQLQVDDEIIAINNTKFSYNDSKEWEE 70
>pdb|2YT7|A Chain A, Solution Structure Of The Pdz Domain Of Amyloid Beta A4
Precursor Protein-Binding Family A Member 3
Length = 101
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 26 VTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTLGYCETGV 68
+ ++ GG A+ G L +GD+L A+ N T G L C+ V
Sbjct: 41 IANLLHGGPAERSGALSIGDRLTAI-NGTSLVGLPLAACQAAV 82
>pdb|1IHJ|A Chain A, Crystal Structure Of The N-Terminal Pdz Domain Of Inad
In Complex With A Norpa C-Terminal Peptide
pdb|1IHJ|B Chain B, Crystal Structure Of The N-Terminal Pdz Domain Of Inad
In Complex With A Norpa C-Terminal Peptide
Length = 98
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 5/38 (13%)
Query: 22 NGIYVTKIMDGGAAQVDGRLQVGDKLIA-----VRNST 54
GI++ I+ A + GRL+VGD++++ VRNST
Sbjct: 37 TGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNST 74
>pdb|1I16|A Chain A, Structure Of Interleukin 16: Implications For Function,
Nmr, 20 Structures
Length = 130
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 7 YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+++ GG G+ H GD + + +I G A++ +Q GD+++ +
Sbjct: 44 FSLEGGKGSLH--GDKPLTINRIFKGAASEQSETVQPGDEILQL 85
>pdb|1N7E|A Chain A, Crystal Structure Of The Sixth Pdz Domain Of Grip1
pdb|1N7F|A Chain A, Crystal Structure Of The Sixth Pdz Domain Of Grip1 In
Complex With Liprin C-Terminal Peptide
pdb|1N7F|B Chain B, Crystal Structure Of The Sixth Pdz Domain Of Grip1 In
Complex With Liprin C-Terminal Peptide
Length = 97
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 23/36 (63%)
Query: 24 IYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGP 59
I ++ + GG A+ G + +GD+++A+ +S++ P
Sbjct: 32 IIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKP 67
>pdb|2OMJ|A Chain A, Solution Structure Of Larg Pdz Domain
pdb|2OS6|A Chain A, Solution Structure Of Larg Pdz Domain In Complex With C-
Terminal Octa-Peptide Of Plexin B1
Length = 89
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 18 IPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTL 61
+ GDN ++V + + GAA G +Q GD++I V + V+ L
Sbjct: 24 VSGDNPVFVQSVKEDGAAMRAG-VQTGDRIIKVNGTLVTHSNHL 66
>pdb|1NF3|C Chain C, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|D Chain D, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 128
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 23 GIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVS 56
GI++++++ GG AQ G L V D+++ V VS
Sbjct: 66 GIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVS 99
>pdb|2DJT|A Chain A, Solution Structures Of The Pdz Domain Of Human Unnamed
Protein Product
Length = 104
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 14 GNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT 60
G + + GD + V ++ G AQ GRL+VGD ++ + N ++G T
Sbjct: 30 GGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHI-NGESTQGLT 75
>pdb|3JQO|B Chain B, Crystal Structure Of The Outer Membrane Complex Of A Type
Iv Secretion System
pdb|3JQO|E Chain E, Crystal Structure Of The Outer Membrane Complex Of A Type
Iv Secretion System
pdb|3JQO|H Chain H, Crystal Structure Of The Outer Membrane Complex Of A Type
Iv Secretion System
pdb|3JQO|K Chain K, Crystal Structure Of The Outer Membrane Complex Of A Type
Iv Secretion System
pdb|3JQO|N Chain N, Crystal Structure Of The Outer Membrane Complex Of A Type
Iv Secretion System
pdb|3JQO|Q Chain Q, Crystal Structure Of The Outer Membrane Complex Of A Type
Iv Secretion System
pdb|3JQO|T Chain T, Crystal Structure Of The Outer Membrane Complex Of A Type
Iv Secretion System
pdb|3JQO|W Chain W, Crystal Structure Of The Outer Membrane Complex Of A Type
Iv Secretion System
pdb|3JQO|Z Chain Z, Crystal Structure Of The Outer Membrane Complex Of A Type
Iv Secretion System
pdb|3JQO|CC Chain c, Crystal Structure Of The Outer Membrane Complex Of A Type
Iv Secretion System
pdb|3JQO|FF Chain f, Crystal Structure Of The Outer Membrane Complex Of A Type
Iv Secretion System
pdb|3JQO|II Chain i, Crystal Structure Of The Outer Membrane Complex Of A Type
Iv Secretion System
pdb|3JQO|LL Chain l, Crystal Structure Of The Outer Membrane Complex Of A Type
Iv Secretion System
pdb|3JQO|OO Chain o, Crystal Structure Of The Outer Membrane Complex Of A Type
Iv Secretion System
Length = 135
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
Query: 6 IYNIAGG----IGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKG 58
+Y I+ + N H+ G+N I++ + R+++GDK++ VRN+ + G
Sbjct: 61 VYXISASGKETLPNSHVVGEN----RNIIEVETVAKEWRIRLGDKVVGVRNNNFAPG 113
>pdb|1WH1|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Kiaa1095
Protein
Length = 124
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 21 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
D GIY+++I A DGR++ GD++I +
Sbjct: 47 DIGIYISEIDPNSIAAKDGRIREGDRIIQI 76
>pdb|1WIF|A Chain A, The Solution Structure Of Rsgi Ruh-020, A Pdz Domain Of
Hypothetical Protein From Mouse
Length = 126
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 7/46 (15%)
Query: 21 DNGIY--VTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTLGYC 64
NG Y ++ +++ GAA DG LQ GD LI+V ++ V LGY
Sbjct: 46 QNGPYLQISHLINKGAAASDGILQPGDVLISVGHANV-----LGYT 86
>pdb|2LC6|A Chain A, Solution Structure Of Par-6 Q144cL164C
Length = 128
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 23 GIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
GI++++++ GG A+ G L V D++I V
Sbjct: 67 GIFISRLVPGGLAESTGLLAVNDEVIEV 94
>pdb|1RZX|A Chain A, Crystal Structure Of A Par-6 Pdz-Peptide Complex
Length = 98
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 23 GIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
GI++++++ GG A+ G L V D++I V
Sbjct: 39 GIFISRLVPGGLAESTGLLAVNDEVIEV 66
>pdb|2EDP|A Chain A, Solution Structure Of The Pdz Domain From Human Shroom
Family Member 4
Length = 100
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 24 IYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+ V+KI DGG A + +++ GD+L+ +
Sbjct: 37 LTVSKIEDGGKAALSQKMRTGDELVNI 63
>pdb|2R4H|B Chain B, Crystal Structure Of A C1190s Mutant Of The 6th Pdz
Domain Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|A Chain A, Crystal Structure Of A C1190s Mutant Of The 6th Pdz
Domain Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|C Chain C, Crystal Structure Of A C1190s Mutant Of The 6th Pdz
Domain Of Human Membrane Associated Guanylate Kinase
Length = 112
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 8/33 (24%), Positives = 21/33 (63%)
Query: 24 IYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVS 56
+YV ++ + G A+ G++++GD+++ + T
Sbjct: 51 LYVLRLAEDGPAERSGKMRIGDEILEINGETTK 83
>pdb|1RY4|A Chain A, Nmr Structure Of The Crib-Pdz Module Of Par-6
Length = 128
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 23 GIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
GI++++++ GG A+ G L V D++I V
Sbjct: 67 GIFISRLVPGGLAESTGLLAVNDEVIEV 94
>pdb|1X8S|A Chain A, Structure Of The Par-6 Pdz Domain With A Pals1 Internal
Ligand
pdb|2LC7|A Chain A, Solution Structure Of The Isolated Par-6 Pdz Domain
Length = 102
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 23 GIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
GI++++++ GG A+ G L V D++I V
Sbjct: 41 GIFISRLVPGGLAESTGLLAVNDEVIEV 68
>pdb|2OFQ|A Chain A, Nmr Solution Structure Of A Complex Between The
Virb9VIRB7 Interaction Domains Of The Pkm101 Type Iv
Secretion System
Length = 95
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 13 IGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVS 56
+ N H+ G+N I++ + R+++GDK++ VRN+ +
Sbjct: 55 LPNSHVVGEN----RNIIEVETVAKEWRIRLGDKVVGVRNNNFA 94
>pdb|1WFV|A Chain A, Solution Structure Of The Fifth Pdz Domain Of Human
Membrane Associated Guanylate Kinase Inverted-2
(Kiaa0705 Protein)
Length = 103
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 20/27 (74%)
Query: 24 IYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+YV ++ + G A +GR++VGD++I +
Sbjct: 38 LYVLRLAEDGPAIRNGRMRVGDQIIEI 64
>pdb|3HPM|A Chain A, Oxidized Dimeric Pick1 Pdz C46g Mutant In Complex With
The C Tail Peptide Of Glur2
pdb|3HPM|B Chain B, Oxidized Dimeric Pick1 Pdz C46g Mutant In Complex With
The C Tail Peptide Of Glur2
Length = 111
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 9 IAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT 60
I+ G G Q+ PG +Y+ ++ D A +DG + GD++ V ++ KG T
Sbjct: 21 ISIGGGAQYCPG---LYIVQVFDNTPAALDGTVAAGDEITGVNGRSI-KGKT 68
>pdb|1KWA|A Chain A, Human CaskLIN-2 Pdz Domain
pdb|1KWA|B Chain B, Human CaskLIN-2 Pdz Domain
Length = 88
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Query: 22 NGIYVTKIMDGGAAQVDGRLQVGDKL-----IAVRNSTVSK 57
N V +IM GG G L VGD++ I+V N TV +
Sbjct: 25 NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQ 65
>pdb|1UEW|A Chain A, Solution Structure Of The Forth Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 114
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 28 KIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGP 59
+I+DG A +L+VGD+++AV ++ P
Sbjct: 49 RIIDGSPADRCAKLKVGDRILAVNGQSIINMP 80
>pdb|1VA8|A Chain A, Solution Structure Of The Pdz Domain Of Pals1 Protein
Length = 113
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 9/29 (31%), Positives = 20/29 (68%)
Query: 22 NGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+ + +++I+ GGAA+ G L GD+++ +
Sbjct: 48 DSVIISRIVKGGAAEKSGLLHEGDEVLEI 76
>pdb|2KPK|A Chain A, Magi-1 Pdz1
pdb|2KPL|A Chain A, Magi-1 Pdz1 E6CT
Length = 129
Score = 25.4 bits (54), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 9/35 (25%), Positives = 22/35 (62%)
Query: 21 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTV 55
D + + ++ G A +DG+++ GD +++V ++ V
Sbjct: 42 DEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCV 76
>pdb|2OPG|A Chain A, The Crystal Structure Of The 10th Pdz Domain Of Mpdz
pdb|2OPG|B Chain B, The Crystal Structure Of The 10th Pdz Domain Of Mpdz
Length = 98
Score = 25.4 bits (54), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 23 GIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
I + ++ + GAA DGRL GD+++ V
Sbjct: 31 AIIIHEVYEEGAACKDGRLWAGDQILEV 58
>pdb|1ZUB|A Chain A, Solution Structure Of The Rim1alpha Pdz Domain In
Complex With An Elks1b C-Terminal Peptide
Length = 114
Score = 25.4 bits (54), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 20 GDNGIYVTKIMDGGAAQVDGRLQVGDKLI 48
G G ++TK+ G A V G L+ GD+++
Sbjct: 52 GRLGAFITKVKKGSLADVVGHLRAGDEVL 80
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.142 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,185,931
Number of Sequences: 62578
Number of extensions: 70395
Number of successful extensions: 307
Number of sequences better than 100.0: 146
Number of HSP's better than 100.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 163
Number of HSP's gapped (non-prelim): 151
length of query: 69
length of database: 14,973,337
effective HSP length: 39
effective length of query: 30
effective length of database: 12,532,795
effective search space: 375983850
effective search space used: 375983850
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)