Query psy12207
Match_columns 69
No_of_seqs 132 out of 1132
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 21:34:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12207.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12207hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00595 PDZ: PDZ domain (Also 99.3 4.4E-12 9.5E-17 70.2 5.4 53 3-60 10-62 (81)
2 KOG3553|consensus 99.3 2.7E-12 5.9E-17 75.4 4.6 56 4-60 36-96 (124)
3 KOG3550|consensus 99.3 4.1E-12 8.8E-17 79.6 5.2 53 3-60 101-153 (207)
4 KOG3209|consensus 99.1 1.4E-10 3.1E-15 85.5 4.7 56 2-62 908-963 (984)
5 cd00992 PDZ_signaling PDZ doma 99.0 2E-09 4.3E-14 58.8 6.9 52 3-60 12-63 (82)
6 cd00136 PDZ PDZ domain, also c 99.0 1.9E-09 4.1E-14 57.6 6.4 48 4-59 2-49 (70)
7 PF13180 PDZ_2: PDZ domain; PD 98.9 3.4E-09 7.4E-14 58.8 5.0 40 22-62 14-53 (82)
8 smart00228 PDZ Domain present 98.9 8.8E-09 1.9E-13 56.2 6.5 51 4-60 13-63 (85)
9 KOG3571|consensus 98.8 8.8E-09 1.9E-13 73.9 4.8 54 4-60 262-315 (626)
10 KOG3551|consensus 98.8 3.4E-09 7.4E-14 74.1 2.3 52 4-60 97-148 (506)
11 KOG3209|consensus 98.8 1.6E-08 3.5E-13 74.9 5.4 53 3-60 660-712 (984)
12 cd00991 PDZ_archaeal_metallopr 98.7 4.9E-08 1.1E-12 53.9 4.9 41 20-61 8-48 (79)
13 KOG3580|consensus 98.7 3E-08 6.6E-13 72.8 4.4 56 3-60 20-76 (1027)
14 KOG1892|consensus 98.6 4.1E-08 8.8E-13 74.8 4.6 57 4-62 944-1000(1629)
15 cd00988 PDZ_CTP_protease PDZ d 98.6 3.3E-08 7.1E-13 54.5 3.1 36 22-58 13-48 (85)
16 KOG3549|consensus 98.6 2.9E-08 6.3E-13 69.1 3.2 52 4-60 67-118 (505)
17 cd00989 PDZ_metalloprotease PD 98.5 1.5E-07 3.3E-12 51.1 3.8 39 22-61 12-50 (79)
18 KOG3651|consensus 98.5 2.3E-07 4.9E-12 63.7 5.3 51 5-60 18-68 (429)
19 cd00987 PDZ_serine_protease PD 98.5 2.5E-07 5.4E-12 51.2 4.4 40 21-61 23-62 (90)
20 KOG3552|consensus 98.5 1.9E-07 4.1E-12 70.9 4.4 55 3-68 65-125 (1298)
21 cd00990 PDZ_glycyl_aminopeptid 98.5 2.8E-07 6E-12 50.3 3.9 37 22-59 12-48 (80)
22 cd00986 PDZ_LON_protease PDZ d 98.3 1.1E-06 2.5E-11 48.1 4.1 37 22-60 8-44 (79)
23 KOG3606|consensus 98.3 1.2E-06 2.7E-11 59.3 4.8 58 3-60 171-232 (358)
24 KOG3580|consensus 98.3 7E-07 1.5E-11 65.8 3.7 50 3-60 417-466 (1027)
25 TIGR02037 degP_htrA_DO peripla 98.2 2.7E-06 5.8E-11 59.4 4.2 40 21-61 256-295 (428)
26 TIGR00225 prc C-terminal pepti 98.1 2.4E-06 5.3E-11 58.0 3.3 37 22-59 62-98 (334)
27 PRK10139 serine endoprotease; 98.1 4.9E-06 1.1E-10 59.0 4.6 41 21-62 289-329 (455)
28 PRK10942 serine endoprotease; 98.1 5.4E-06 1.2E-10 59.0 4.6 41 21-62 310-350 (473)
29 TIGR02038 protease_degS peripl 98.1 5.3E-06 1.1E-10 57.0 3.9 39 22-61 278-316 (351)
30 PRK10898 serine endoprotease; 98.1 7E-06 1.5E-10 56.5 4.5 39 22-61 279-317 (353)
31 TIGR02037 degP_htrA_DO peripla 98.0 6.6E-06 1.4E-10 57.5 4.2 40 22-62 362-401 (428)
32 TIGR01713 typeII_sec_gspC gene 98.0 8.2E-06 1.8E-10 54.3 4.3 39 22-61 191-229 (259)
33 PRK10779 zinc metallopeptidase 98.0 3.5E-06 7.6E-11 59.4 2.6 38 24-62 128-165 (449)
34 PLN00049 carboxyl-terminal pro 98.0 1.2E-05 2.7E-10 55.8 5.3 36 23-59 103-138 (389)
35 COG0793 Prc Periplasmic protea 98.0 6E-06 1.3E-10 57.9 3.6 49 11-60 100-149 (406)
36 PRK10139 serine endoprotease; 98.0 9.6E-06 2.1E-10 57.5 4.4 40 22-62 390-429 (455)
37 TIGR00054 RIP metalloprotease 98.0 8.2E-06 1.8E-10 57.2 3.9 39 22-61 203-241 (420)
38 PRK10779 zinc metallopeptidase 98.0 1.4E-05 3E-10 56.4 4.6 38 23-61 222-259 (449)
39 PRK10942 serine endoprotease; 97.9 1.5E-05 3.2E-10 56.8 4.0 40 22-62 408-447 (473)
40 TIGR00054 RIP metalloprotease 97.8 1.5E-05 3.3E-10 55.9 3.2 40 22-62 128-167 (420)
41 KOG3542|consensus 97.8 7.4E-06 1.6E-10 61.3 1.7 50 5-60 550-599 (1283)
42 TIGR03279 cyano_FeS_chp putati 97.7 1.5E-05 3.3E-10 56.5 2.0 36 26-62 2-37 (433)
43 PRK11186 carboxy-terminal prot 97.7 3.5E-05 7.7E-10 57.1 2.7 45 12-56 245-291 (667)
44 KOG3605|consensus 97.5 3.8E-05 8.2E-10 57.0 1.4 52 5-60 659-711 (829)
45 PF04495 GRASP55_65: GRASP55/6 97.5 0.0002 4.4E-09 43.8 4.3 55 4-61 27-82 (138)
46 COG0265 DegQ Trypsin-like seri 97.2 0.00049 1.1E-08 46.8 4.1 41 21-62 269-309 (347)
47 KOG0609|consensus 97.0 0.00049 1.1E-08 50.0 2.4 38 23-60 147-184 (542)
48 TIGR02860 spore_IV_B stage IV 97.0 0.00071 1.5E-08 47.8 2.9 40 21-61 104-151 (402)
49 KOG3605|consensus 97.0 0.00059 1.3E-08 50.9 2.5 34 26-60 760-793 (829)
50 COG3975 Predicted protease wit 96.9 0.0012 2.6E-08 48.1 3.9 34 19-53 459-492 (558)
51 KOG3129|consensus 96.8 0.0018 3.9E-08 42.5 3.8 37 22-59 139-175 (231)
52 KOG1320|consensus 96.5 0.0035 7.5E-08 45.2 3.8 37 23-60 399-435 (473)
53 COG3480 SdrC Predicted secrete 95.7 0.013 2.8E-07 40.6 3.2 38 22-61 130-167 (342)
54 PF14685 Tricorn_PDZ: Tricorn 95.3 0.021 4.6E-07 32.5 2.8 37 22-58 12-57 (88)
55 KOG3938|consensus 95.3 0.0075 1.6E-07 41.1 1.0 50 3-60 137-187 (334)
56 PRK09681 putative type II secr 95.3 0.018 4E-07 39.0 2.8 36 24-60 206-244 (276)
57 KOG1738|consensus 93.6 0.1 2.2E-06 39.0 3.6 38 23-60 226-263 (638)
58 KOG3532|consensus 93.5 0.11 2.4E-06 39.6 3.8 40 20-60 396-435 (1051)
59 PF12812 PDZ_1: PDZ-like domai 93.1 0.13 2.9E-06 28.5 2.9 40 23-63 31-70 (78)
60 KOG1421|consensus 92.6 0.1 2.2E-06 39.9 2.4 36 23-60 304-339 (955)
61 KOG2921|consensus 91.8 0.19 4E-06 36.1 2.8 40 21-60 219-258 (484)
62 COG0750 Predicted membrane-ass 90.2 0.43 9.3E-06 32.5 3.4 32 28-60 135-166 (375)
63 KOG0606|consensus 89.8 0.31 6.8E-06 38.7 2.7 37 23-60 659-695 (1205)
64 COG3031 PulC Type II secretory 85.7 0.81 1.7E-05 30.9 2.4 28 32-60 217-244 (275)
65 KOG4407|consensus 78.9 0.82 1.8E-05 37.4 0.6 37 22-59 143-179 (1973)
66 PF11874 DUF3394: Domain of un 77.2 4.8 0.0001 25.9 3.7 31 20-51 120-150 (183)
67 KOG3834|consensus 74.8 2.6 5.7E-05 30.5 2.2 37 20-56 13-49 (462)
68 KOG1421|consensus 70.7 5.3 0.00011 31.0 3.0 37 22-60 862-898 (955)
69 KOG1945|consensus 59.7 9.4 0.0002 27.1 2.4 58 3-60 110-168 (377)
70 cd02194 ThiL ThiL (Thiamine-mo 53.0 30 0.00065 22.9 3.9 51 2-53 107-158 (291)
71 KOG4407|consensus 52.9 11 0.00024 31.4 2.1 38 22-60 96-133 (1973)
72 KOG4371|consensus 51.0 24 0.00052 28.8 3.5 41 20-60 1268-1308(1332)
73 COG5233 GRH1 Peripheral Golgi 49.5 12 0.00026 26.5 1.7 32 24-56 65-96 (417)
74 cd02195 SelD Selenophosphate s 49.1 16 0.00034 24.4 2.1 48 2-50 123-171 (287)
75 KOG0792|consensus 48.3 9.3 0.0002 30.7 1.0 57 4-60 717-787 (1144)
76 COG1625 Fe-S oxidoreductase, r 46.0 22 0.00047 25.7 2.5 36 24-60 3-39 (414)
77 TIGR00476 selD selenium donor 45.5 20 0.00043 24.6 2.2 49 2-51 130-179 (347)
78 COG2144 Selenophosphate synthe 44.2 56 0.0012 22.9 4.2 58 3-60 121-182 (324)
79 TIGR01379 thiL thiamine-monoph 42.9 54 0.0012 22.0 4.0 50 2-52 108-158 (317)
80 PRK14105 selenophosphate synth 41.8 32 0.00069 23.6 2.8 49 2-51 126-175 (345)
81 PF13752 DUF4165: Domain of un 40.3 36 0.00077 20.7 2.5 49 7-60 37-86 (124)
82 PRK00943 selenophosphate synth 40.2 39 0.00085 23.2 3.0 49 2-51 129-178 (347)
83 cd00396 PurM-like AIR (aminoim 38.6 50 0.0011 20.8 3.2 49 2-51 68-122 (222)
84 PF07591 PT-HINT: Pretoxin HIN 38.5 23 0.00049 21.1 1.5 19 37-55 73-91 (130)
85 KOG3834|consensus 36.4 58 0.0013 23.9 3.4 34 20-53 107-141 (462)
86 PRK05731 thiamine monophosphat 34.5 94 0.002 20.8 4.1 50 2-52 110-160 (318)
87 cd02192 PurM-like3 AIR synthas 34.4 65 0.0014 21.5 3.3 48 2-50 112-160 (283)
88 COG4273 Uncharacterized conser 32.2 29 0.00062 21.3 1.2 31 25-56 49-79 (135)
89 COG0309 HypE Hydrogenase matur 31.9 83 0.0018 22.2 3.6 58 2-60 118-180 (339)
90 PF14250 AbrB-like: AbrB-like 31.6 95 0.0021 17.1 4.0 29 18-47 24-59 (71)
91 PRK03760 hypothetical protein; 30.7 41 0.00089 19.8 1.7 24 23-48 90-113 (117)
92 PRK02268 hypothetical protein; 30.5 61 0.0013 20.0 2.5 21 28-49 24-44 (141)
93 COG0260 PepB Leucyl aminopepti 29.7 66 0.0014 23.7 2.9 31 24-56 300-330 (485)
94 PF13403 Hint_2: Hint domain 28.3 49 0.0011 20.1 1.8 22 31-53 12-33 (147)
95 PRK05385 phosphoribosylaminoim 27.4 84 0.0018 21.3 3.0 49 2-51 124-179 (327)
96 cd06919 Asp_decarbox Aspartate 27.4 51 0.0011 19.7 1.7 21 30-52 69-89 (111)
97 PF06838 Met_gamma_lyase: Meth 26.6 30 0.00064 25.0 0.7 23 38-60 90-112 (403)
98 cd02197 HypE HypE (Hydrogenase 26.3 1.2E+02 0.0027 20.1 3.6 50 2-52 106-161 (293)
99 PF08250 Sperm_act_pep: Sperm- 25.5 28 0.0006 12.1 0.2 6 6-11 1-6 (10)
100 cd01433 Ribosomal_L16_L10e Rib 25.3 41 0.00088 19.5 1.0 22 33-54 68-89 (112)
101 PRK05449 aspartate alpha-decar 25.2 59 0.0013 19.8 1.7 21 30-52 70-90 (126)
102 cd02691 PurM-like2 AIR synthas 24.8 77 0.0017 22.0 2.4 49 2-51 115-170 (346)
103 TIGR00223 panD L-aspartate-alp 24.6 62 0.0013 19.7 1.7 21 30-52 70-90 (126)
104 COG0709 SelD Selenophosphate s 24.4 86 0.0019 22.2 2.6 47 3-49 130-176 (346)
105 PF08541 ACP_syn_III_C: 3-Oxoa 24.3 67 0.0014 17.2 1.7 16 36-51 61-76 (90)
106 TIGR00739 yajC preprotein tran 24.1 68 0.0015 17.8 1.7 15 40-54 37-51 (84)
107 PRK05585 yajC preprotein trans 24.0 64 0.0014 18.8 1.7 15 40-54 52-66 (106)
108 PLN00022 electron transfer fla 23.4 1.6E+02 0.0035 20.8 3.8 31 22-53 294-324 (356)
109 PRK11916 electron transfer fla 23.4 1.4E+02 0.0031 20.6 3.5 33 21-54 251-283 (312)
110 TIGR00878 purM phosphoribosyla 23.0 1.5E+02 0.0032 20.3 3.5 50 2-52 124-180 (332)
111 PRK03363 fixB putative electro 22.6 1.6E+02 0.0034 20.4 3.6 32 21-53 252-283 (313)
112 PF15057 DUF4537: Domain of un 21.8 76 0.0016 18.8 1.7 25 25-50 41-65 (124)
113 cd06061 PurM-like1 AIR synthas 21.7 92 0.002 20.5 2.3 49 2-51 107-159 (298)
114 TIGR02451 anti_sig_ChrR anti-s 21.2 1.6E+02 0.0034 19.0 3.2 45 8-53 133-177 (215)
115 PF00240 ubiquitin: Ubiquitin 20.9 1.2E+02 0.0027 15.1 2.3 29 35-64 26-54 (69)
116 PF02261 Asp_decarbox: Asparta 20.9 53 0.0012 19.7 0.9 18 32-51 72-89 (116)
117 COG0853 PanD Aspartate 1-decar 20.9 67 0.0015 19.5 1.3 23 30-54 69-91 (126)
118 PF14453 ThiS-like: ThiS-like 20.7 1.2E+02 0.0027 15.8 2.2 22 29-50 33-54 (57)
119 COG0197 RplP Ribosomal protein 20.3 52 0.0011 20.5 0.8 25 32-56 91-115 (146)
120 CHL00044 rpl16 ribosomal prote 20.0 58 0.0012 19.8 1.0 24 32-55 88-111 (135)
No 1
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=99.32 E-value=4.4e-12 Score=70.15 Aligned_cols=53 Identities=25% Similarity=0.559 Sum_probs=48.6
Q ss_pred CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207 3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT 60 (69)
Q Consensus 3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~ 60 (69)
..|||++.++.+.. ..++||+.+.++|||+++| |++||+|++|||+++.++++
T Consensus 10 ~~lG~~l~~~~~~~----~~~~~V~~v~~~~~a~~~g-l~~GD~Il~INg~~v~~~~~ 62 (81)
T PF00595_consen 10 GPLGFTLRGGSDND----EKGVFVSSVVPGSPAERAG-LKVGDRILEINGQSVRGMSH 62 (81)
T ss_dssp SBSSEEEEEESTSS----SEEEEEEEECTTSHHHHHT-SSTTEEEEEETTEESTTSBH
T ss_pred CCcCEEEEecCCCC----cCCEEEEEEeCCChHHhcc-cchhhhhheeCCEeCCCCCH
Confidence 57999999998875 2489999999999999999 99999999999999999987
No 2
>KOG3553|consensus
Probab=99.32 E-value=2.7e-12 Score=75.37 Aligned_cols=56 Identities=30% Similarity=0.538 Sum_probs=48.7
Q ss_pred cCceEEecCCCC-----CCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207 4 APIYNIAGGIGN-----QHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT 60 (69)
Q Consensus 4 ~lG~~i~GG~~~-----~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~ 60 (69)
.+||.|-||++. |....+.++||++|.++|||+.+| |+.+|+|+++||-+++=+++
T Consensus 36 ~~GFkIGGGIDQDp~k~Pf~ytD~GiYvT~V~eGsPA~~AG-LrihDKIlQvNG~DfTMvTH 96 (124)
T KOG3553|consen 36 ILGFKIGGGIDQDPSKNPFSYTDKGIYVTRVSEGSPAEIAG-LRIHDKILQVNGWDFTMVTH 96 (124)
T ss_pred EEEEEeccccCCCcccCCCCcCCccEEEEEeccCChhhhhc-ceecceEEEecCceeEEEEh
Confidence 479999999975 335567899999999999999999 99999999999998875554
No 3
>KOG3550|consensus
Probab=99.31 E-value=4.1e-12 Score=79.59 Aligned_cols=53 Identities=30% Similarity=0.547 Sum_probs=48.5
Q ss_pred CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207 3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT 60 (69)
Q Consensus 3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~ 60 (69)
..|||++.||+...+ +|||++++|+|.|++-|.|+.||++++|||.+++.-.+
T Consensus 101 eglgfnvmggkeqns-----piyisriipggvadrhgglkrgdqllsvngvsvege~h 153 (207)
T KOG3550|consen 101 EGLGFNVMGGKEQNS-----PIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHH 153 (207)
T ss_pred cccceeeccCcccCC-----ceEEEeecCCccccccCcccccceeEeecceeecchhh
Confidence 479999999999887 99999999999999999999999999999999986443
No 4
>KOG3209|consensus
Probab=99.08 E-value=1.4e-10 Score=85.47 Aligned_cols=56 Identities=21% Similarity=0.392 Sum_probs=51.9
Q ss_pred CCcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcccc
Q psy12207 2 CIAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTLG 62 (69)
Q Consensus 2 ~~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~~ 62 (69)
.+.+||+|.||..... ++||-++.++|||.++||+++||+|++|||++-.++++-+
T Consensus 908 ~kGFGFSiRGGreynM-----~LfVLRlAeDGPA~rdGrm~VGDqi~eINGesTkgmtH~r 963 (984)
T KOG3209|consen 908 AKGFGFSIRGGREYNM-----DLFVLRLAEDGPAIRDGRMRVGDQITEINGESTKGMTHDR 963 (984)
T ss_pred ccccceEeeccccccc-----ceEEEEeccCCCccccCceeecceEEEecCcccCCCcHHH
Confidence 4689999999988777 8999999999999999999999999999999999999843
No 5
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=99.03 E-value=2e-09 Score=58.83 Aligned_cols=52 Identities=29% Similarity=0.551 Sum_probs=44.5
Q ss_pred CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207 3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT 60 (69)
Q Consensus 3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~ 60 (69)
..|||++.++.... .+++|..+.+++||++++ |++||+|++||+.++.+++.
T Consensus 12 ~~~G~~~~~~~~~~-----~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~~~~ 63 (82)
T cd00992 12 GGLGFSLRGGKDSG-----GGIFVSRVEPGGPAERGG-LRVGDRILEVNGVSVEGLTH 63 (82)
T ss_pred CCcCEEEeCcccCC-----CCeEEEEECCCChHHhCC-CCCCCEEEEECCEEcCccCH
Confidence 57899998776542 389999999999999988 99999999999999985443
No 6
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=99.02 E-value=1.9e-09 Score=57.62 Aligned_cols=48 Identities=31% Similarity=0.502 Sum_probs=42.5
Q ss_pred cCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCc
Q psy12207 4 APIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGP 59 (69)
Q Consensus 4 ~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~ 59 (69)
.+||++.+..+ .+++|+.+.+++||+.+| |++||+|++||++++.+.+
T Consensus 2 ~~G~~~~~~~~-------~~~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~v~~~~ 49 (70)
T cd00136 2 GLGFSIRGGTE-------GGVVVLSVEPGSPAERAG-LQAGDVILAVNGTDVKNLT 49 (70)
T ss_pred CccEEEecCCC-------CCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCCC
Confidence 47888887665 389999999999999988 9999999999999999884
No 7
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=98.91 E-value=3.4e-09 Score=58.76 Aligned_cols=40 Identities=30% Similarity=0.522 Sum_probs=35.6
Q ss_pred CcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcccc
Q psy12207 22 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTLG 62 (69)
Q Consensus 22 ~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~~ 62 (69)
.+++|..+.+++||+++| |++||.|++|||+++.+...+.
T Consensus 14 ~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~ 53 (82)
T PF13180_consen 14 GGVVVVSVIPGSPAAKAG-LQPGDIILAINGKPVNSSEDLV 53 (82)
T ss_dssp SSEEEEEESTTSHHHHTT-S-TTEEEEEETTEESSSHHHHH
T ss_pred CeEEEEEeCCCCcHHHCC-CCCCcEEEEECCEEcCCHHHHH
Confidence 489999999999999999 9999999999999998776643
No 8
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=98.91 E-value=8.8e-09 Score=56.20 Aligned_cols=51 Identities=25% Similarity=0.490 Sum_probs=43.1
Q ss_pred cCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207 4 APIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT 60 (69)
Q Consensus 4 ~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~ 60 (69)
.+||.+..+.... .+++|..+.++++|+++| |++||+|++||++++.+.+.
T Consensus 13 ~~G~~~~~~~~~~-----~~~~i~~v~~~s~a~~~g-l~~GD~I~~In~~~v~~~~~ 63 (85)
T smart00228 13 GLGFSLVGGKDEG-----GGVVVSSVVPGSPAAKAG-LKVGDVILEVNGTSVEGLTH 63 (85)
T ss_pred cccEEEECCCCCC-----CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCH
Confidence 5778777654322 389999999999999999 99999999999999998766
No 9
>KOG3571|consensus
Probab=98.79 E-value=8.8e-09 Score=73.87 Aligned_cols=54 Identities=35% Similarity=0.598 Sum_probs=47.9
Q ss_pred cCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207 4 APIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT 60 (69)
Q Consensus 4 ~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~ 60 (69)
.||++|+|=.... ++.+|||..+.++|+-+.+||+.+||.|++||.++++|++.
T Consensus 262 fLGiSivgqsn~r---gDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSN 315 (626)
T KOG3571|consen 262 FLGISIVGQSNAR---GDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSN 315 (626)
T ss_pred cceeEeecccCcC---CCCceEEeeeccCceeeccCccCccceEEEeeecchhhcCc
Confidence 5899999844332 45699999999999999999999999999999999999987
No 10
>KOG3551|consensus
Probab=98.77 E-value=3.4e-09 Score=74.15 Aligned_cols=52 Identities=29% Similarity=0.435 Sum_probs=50.0
Q ss_pred cCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207 4 APIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT 60 (69)
Q Consensus 4 ~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~ 60 (69)
.||++|.||++++. +|.|++++++-+|++.+.|..||.|++|||.++.+.++
T Consensus 97 GLGISIKGGreNkM-----PIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtH 148 (506)
T KOG3551|consen 97 GLGISIKGGRENKM-----PILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATH 148 (506)
T ss_pred cceEEeecCcccCC-----ceehhHhccccccccccceeeccEEEEecchhhhhcch
Confidence 68999999999998 99999999999999999999999999999999998887
No 11
>KOG3209|consensus
Probab=98.75 E-value=1.6e-08 Score=74.91 Aligned_cols=53 Identities=32% Similarity=0.458 Sum_probs=49.6
Q ss_pred CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207 3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT 60 (69)
Q Consensus 3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~ 60 (69)
-.+||+|.||.+... +|||-.+++.|+|+++|||+.||+|+.|+|+++...|+
T Consensus 660 sGFGFRiLGG~ep~q-----pi~iG~Iv~lGaAe~DGRL~~gDElv~iDG~pV~GksH 712 (984)
T KOG3209|consen 660 SGFGFRILGGDEPGQ-----PIYIGAIVPLGAAEEDGRLREGDELVCIDGIPVEGKSH 712 (984)
T ss_pred cccceEEecCCCCCC-----eeEEeeeeecccccccCcccCCCeEEEecCeeccCccH
Confidence 368999999998765 99999999999999999999999999999999999887
No 12
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.69 E-value=4.9e-08 Score=53.91 Aligned_cols=41 Identities=15% Similarity=0.338 Sum_probs=36.7
Q ss_pred CCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCccc
Q psy12207 20 GDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTL 61 (69)
Q Consensus 20 ~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~ 61 (69)
...+++|..+.+++||+++| |++||+|++||++++.+...+
T Consensus 8 ~~~Gv~V~~V~~~spa~~aG-L~~GDiI~~Ing~~v~~~~d~ 48 (79)
T cd00991 8 AVAGVVIVGVIVGSPAENAV-LHTGDVIYSINGTPITTLEDF 48 (79)
T ss_pred cCCcEEEEEECCCChHHhcC-CCCCCEEEEECCEEcCCHHHH
Confidence 34589999999999999999 999999999999999876553
No 13
>KOG3580|consensus
Probab=98.66 E-value=3e-08 Score=72.78 Aligned_cols=56 Identities=27% Similarity=0.449 Sum_probs=50.0
Q ss_pred CcCceEEecCCCCCC-CCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207 3 IAPIYNIAGGIGNQH-IPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT 60 (69)
Q Consensus 3 ~~lG~~i~GG~~~~~-~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~ 60 (69)
..+|+-|+||.++++ ..++..|+|+.|.|+||| .|+||.||+|+.|||++++|...
T Consensus 20 rGFGIAiSGGRDnPhf~~getSiViSDVlpGGPA--eG~LQenDrvvMVNGvsMenv~h 76 (1027)
T KOG3580|consen 20 RGFGIAISGGRDNPHFENGETSIVISDVLPGGPA--EGLLQENDRVVMVNGVSMENVLH 76 (1027)
T ss_pred CcceeEeecCCCCCCccCCceeEEEeeccCCCCc--ccccccCCeEEEEcCcchhhhHH
Confidence 367889999999987 456778999999999999 77899999999999999998766
No 14
>KOG1892|consensus
Probab=98.64 E-value=4.1e-08 Score=74.79 Aligned_cols=57 Identities=32% Similarity=0.499 Sum_probs=48.0
Q ss_pred cCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcccc
Q psy12207 4 APIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTLG 62 (69)
Q Consensus 4 ~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~~ 62 (69)
+.|++|+.-+|.-. +..||||.+|.+|++|+.+|||+.||++++|||+++-.+++-+
T Consensus 944 GmGLSIVAAkGaGq--~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQEr 1000 (1629)
T KOG1892|consen 944 GMGLSIVAAKGAGQ--RKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQER 1000 (1629)
T ss_pred CceEEEEeeccCCc--cccceEEEEeccCCccccccccccCceeeeecCcccccccHHH
Confidence 45778777555433 3469999999999999999999999999999999999998833
No 15
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.63 E-value=3.3e-08 Score=54.51 Aligned_cols=36 Identities=25% Similarity=0.533 Sum_probs=34.1
Q ss_pred CcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCC
Q psy12207 22 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKG 58 (69)
Q Consensus 22 ~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~ 58 (69)
.+++|..+.+++||+++| |++||+|++||++++.+.
T Consensus 13 ~~~~V~~v~~~s~a~~~g-l~~GD~I~~vng~~i~~~ 48 (85)
T cd00988 13 GGLVITSVLPGSPAAKAG-IKAGDIIVAIDGEPVDGL 48 (85)
T ss_pred CeEEEEEecCCCCHHHcC-CCCCCEEEEECCEEcCCC
Confidence 479999999999999998 999999999999999887
No 16
>KOG3549|consensus
Probab=98.62 E-value=2.9e-08 Score=69.05 Aligned_cols=52 Identities=29% Similarity=0.447 Sum_probs=49.5
Q ss_pred cCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207 4 APIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT 60 (69)
Q Consensus 4 ~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~ 60 (69)
+||++|.||.+... |+.|+++.++-+|+..|.|-+||.|++|||+.++++++
T Consensus 67 GlGLSIKGGaEHn~-----PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~H 118 (505)
T KOG3549|consen 67 GLGLSIKGGAEHNL-----PVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPH 118 (505)
T ss_pred cceeeeccccccCc-----cEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCCh
Confidence 68999999998776 99999999999999999999999999999999999988
No 17
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.52 E-value=1.5e-07 Score=51.11 Aligned_cols=39 Identities=21% Similarity=0.416 Sum_probs=35.0
Q ss_pred CcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCccc
Q psy12207 22 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTL 61 (69)
Q Consensus 22 ~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~ 61 (69)
.++.|..+.++++|++.| |++||+|++|||+++.+...+
T Consensus 12 ~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~~~~~ 50 (79)
T cd00989 12 IEPVIGEVVPGSPAAKAG-LKAGDRILAINGQKIKSWEDL 50 (79)
T ss_pred cCcEEEeECCCCHHHHcC-CCCCCEEEEECCEECCCHHHH
Confidence 368999999999999999 999999999999999876553
No 18
>KOG3651|consensus
Probab=98.51 E-value=2.3e-07 Score=63.69 Aligned_cols=51 Identities=27% Similarity=0.466 Sum_probs=46.4
Q ss_pred CceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207 5 PIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT 60 (69)
Q Consensus 5 lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~ 60 (69)
.|++|-||....+ =+||.+|+.+.||+++|+++.||.|+.|||+++...+.
T Consensus 18 iGISIGGGapyCP-----ClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktK 68 (429)
T KOG3651|consen 18 IGISIGGGAPYCP-----CLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTK 68 (429)
T ss_pred eeEEecCCCCcCC-----eEEEEEeccCCchhccCccccCCeeEEecceeecCccH
Confidence 4899999988776 78999999999999999999999999999999987654
No 19
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.50 E-value=2.5e-07 Score=51.21 Aligned_cols=40 Identities=30% Similarity=0.487 Sum_probs=36.2
Q ss_pred CCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCccc
Q psy12207 21 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTL 61 (69)
Q Consensus 21 ~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~ 61 (69)
..+++|..+.+++||+++| +++||+|++||++++.+...+
T Consensus 23 ~~g~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~i~~~~~~ 62 (90)
T cd00987 23 TKGVLVASVDPGSPAAKAG-LKPGDVILAVNGKPVKSVADL 62 (90)
T ss_pred CCEEEEEEECCCCHHHHcC-CCcCCEEEEECCEECCCHHHH
Confidence 3489999999999999999 999999999999999887653
No 20
>KOG3552|consensus
Probab=98.47 E-value=1.9e-07 Score=70.89 Aligned_cols=55 Identities=29% Similarity=0.573 Sum_probs=48.0
Q ss_pred CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc------ccccccCC
Q psy12207 3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT------LGYCETGV 68 (69)
Q Consensus 3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~------~~~~~~~~ 68 (69)
+.|||-++.| .++.|..|.+|||+ -|+|++||+|++|||.++.+.+. +|.|+.+|
T Consensus 65 ~~lGFgfvag---------rPviVr~VT~GGps--~GKL~PGDQIl~vN~Epv~daprervIdlvRace~sv 125 (1298)
T KOG3552|consen 65 ASLGFGFVAG---------RPVIVRFVTEGGPS--IGKLQPGDQILAVNGEPVKDAPRERVIDLVRACESSV 125 (1298)
T ss_pred ccccceeecC---------CceEEEEecCCCCc--cccccCCCeEEEecCcccccccHHHHHHHHHHHhhhc
Confidence 4678887776 27999999999999 56899999999999999999887 88888765
No 21
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.46 E-value=2.8e-07 Score=50.32 Aligned_cols=37 Identities=32% Similarity=0.280 Sum_probs=33.9
Q ss_pred CcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCc
Q psy12207 22 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGP 59 (69)
Q Consensus 22 ~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~ 59 (69)
.++.|..+.++++|+.+| |++||+|++||++++.+..
T Consensus 12 ~~~~V~~V~~~s~a~~aG-l~~GD~I~~Ing~~v~~~~ 48 (80)
T cd00990 12 GLGKVTFVRDDSPADKAG-LVAGDELVAVNGWRVDALQ 48 (80)
T ss_pred CcEEEEEECCCChHHHhC-CCCCCEEEEECCEEhHHHH
Confidence 379999999999999999 9999999999999998743
No 22
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.32 E-value=1.1e-06 Score=48.07 Aligned_cols=37 Identities=32% Similarity=0.586 Sum_probs=33.3
Q ss_pred CcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207 22 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT 60 (69)
Q Consensus 22 ~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~ 60 (69)
.+++|..+.+++||+. + |++||.|++||+.++.+...
T Consensus 8 ~Gv~V~~V~~~s~A~~-g-L~~GD~I~~Ing~~v~~~~~ 44 (79)
T cd00986 8 HGVYVTSVVEGMPAAG-K-LKAGDHIIAVDGKPFKEAEE 44 (79)
T ss_pred cCEEEEEECCCCchhh-C-CCCCCEEEEECCEECCCHHH
Confidence 4799999999999986 7 99999999999999987654
No 23
>KOG3606|consensus
Probab=98.30 E-value=1.2e-06 Score=59.27 Aligned_cols=58 Identities=22% Similarity=0.388 Sum_probs=48.8
Q ss_pred CcCceEEecCCCCCC----CCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207 3 IAPIYNIAGGIGNQH----IPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT 60 (69)
Q Consensus 3 ~~lG~~i~GG~~~~~----~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~ 60 (69)
+-|||-|..|..... .+.-.+|||++..|+|.|+-.|.|-++|++++|||+.+...++
T Consensus 171 kPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTL 232 (358)
T KOG3606|consen 171 KPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTL 232 (358)
T ss_pred CCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEEcCEEeccccH
Confidence 458999999975321 2334599999999999999999999999999999999987776
No 24
>KOG3580|consensus
Probab=98.29 E-value=7e-07 Score=65.82 Aligned_cols=50 Identities=28% Similarity=0.452 Sum_probs=45.7
Q ss_pred CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207 3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT 60 (69)
Q Consensus 3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~ 60 (69)
.+.|+.++||-+. +|||..|.+++||+..| |+.||+|++||.+++.|+..
T Consensus 417 dSvGLRLAGGNDV-------GIFVaGvqegspA~~eG-lqEGDQIL~VN~vdF~nl~R 466 (1027)
T KOG3580|consen 417 DSVGLRLAGGNDV-------GIFVAGVQEGSPAEQEG-LQEGDQILKVNTVDFRNLVR 466 (1027)
T ss_pred CeeeeEeccCCce-------eEEEeecccCCchhhcc-ccccceeEEeccccchhhhH
Confidence 4678999999875 89999999999999999 99999999999999998765
No 25
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=98.17 E-value=2.7e-06 Score=59.44 Aligned_cols=40 Identities=28% Similarity=0.537 Sum_probs=36.7
Q ss_pred CCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCccc
Q psy12207 21 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTL 61 (69)
Q Consensus 21 ~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~ 61 (69)
..+++|..|.+++||+++| |++||+|++|||+++.+...+
T Consensus 256 ~~Gv~V~~V~~~spA~~aG-L~~GDvI~~Vng~~i~~~~~~ 295 (428)
T TIGR02037 256 QRGALVAQVLPGSPAEKAG-LKAGDVILSVNGKPISSFADL 295 (428)
T ss_pred CCceEEEEccCCCChHHcC-CCCCCEEEEECCEEcCCHHHH
Confidence 3589999999999999999 999999999999999987664
No 26
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=98.13 E-value=2.4e-06 Score=58.02 Aligned_cols=37 Identities=24% Similarity=0.474 Sum_probs=34.4
Q ss_pred CcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCc
Q psy12207 22 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGP 59 (69)
Q Consensus 22 ~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~ 59 (69)
.+++|..|.+++||+++| |++||+|++|||+++.+.+
T Consensus 62 ~~~~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~~~ 98 (334)
T TIGR00225 62 GEIVIVSPFEGSPAEKAG-IKPGDKIIKINGKSVAGMS 98 (334)
T ss_pred CEEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCC
Confidence 479999999999999999 9999999999999998763
No 27
>PRK10139 serine endoprotease; Provisional
Probab=98.10 E-value=4.9e-06 Score=58.99 Aligned_cols=41 Identities=15% Similarity=0.404 Sum_probs=37.4
Q ss_pred CCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcccc
Q psy12207 21 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTLG 62 (69)
Q Consensus 21 ~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~~ 62 (69)
..+++|..|.+++||+++| |++||+|++|||+++.+...+.
T Consensus 289 ~~Gv~V~~V~~~SpA~~AG-L~~GDvIl~InG~~V~s~~dl~ 329 (455)
T PRK10139 289 QRGAFVSEVLPNSGSAKAG-VKAGDIITSLNGKPLNSFAELR 329 (455)
T ss_pred CCceEEEEECCCChHHHCC-CCCCCEEEEECCEECCCHHHHH
Confidence 3589999999999999999 9999999999999999877754
No 28
>PRK10942 serine endoprotease; Provisional
Probab=98.09 E-value=5.4e-06 Score=59.02 Aligned_cols=41 Identities=20% Similarity=0.460 Sum_probs=37.6
Q ss_pred CCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcccc
Q psy12207 21 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTLG 62 (69)
Q Consensus 21 ~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~~ 62 (69)
..+++|..|.+++||+++| |+.||+|++|||+++.+...+.
T Consensus 310 ~~GvlV~~V~~~SpA~~AG-L~~GDvIl~InG~~V~s~~dl~ 350 (473)
T PRK10942 310 QRGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPISSFAALR 350 (473)
T ss_pred CCceEEEEECCCChHHHcC-CCCCCEEEEECCEECCCHHHHH
Confidence 3589999999999999999 9999999999999999887754
No 29
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=98.05 E-value=5.3e-06 Score=56.96 Aligned_cols=39 Identities=26% Similarity=0.367 Sum_probs=36.2
Q ss_pred CcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCccc
Q psy12207 22 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTL 61 (69)
Q Consensus 22 ~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~ 61 (69)
.+++|.++.+++||+++| |++||+|++|||+++.+...+
T Consensus 278 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s~~dl 316 (351)
T TIGR02038 278 RGIVITGVDPNGPAARAG-ILVRDVILKYDGKDVIGAEEL 316 (351)
T ss_pred ccceEeecCCCChHHHCC-CCCCCEEEEECCEEcCCHHHH
Confidence 589999999999999999 999999999999999987654
No 30
>PRK10898 serine endoprotease; Provisional
Probab=98.05 E-value=7e-06 Score=56.48 Aligned_cols=39 Identities=31% Similarity=0.452 Sum_probs=35.9
Q ss_pred CcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCccc
Q psy12207 22 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTL 61 (69)
Q Consensus 22 ~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~ 61 (69)
.+++|..+.+++||+++| |++||+|++|||+++.+...+
T Consensus 279 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s~~~l 317 (353)
T PRK10898 279 QGIVVNEVSPDGPAAKAG-IQVNDLIISVNNKPAISALET 317 (353)
T ss_pred CeEEEEEECCCChHHHcC-CCCCCEEEEECCEEcCCHHHH
Confidence 589999999999999999 999999999999999876553
No 31
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=98.04 E-value=6.6e-06 Score=57.47 Aligned_cols=40 Identities=38% Similarity=0.576 Sum_probs=36.8
Q ss_pred CcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcccc
Q psy12207 22 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTLG 62 (69)
Q Consensus 22 ~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~~ 62 (69)
.+++|+.+.+++||+++| |++||+|++||++++.+...+.
T Consensus 362 ~Gv~V~~V~~~SpA~~aG-L~~GDvI~~Ing~~V~s~~d~~ 401 (428)
T TIGR02037 362 KGVVVTKVVSGSPAARAG-LQPGDVILSVNQQPVSSVAELR 401 (428)
T ss_pred CceEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCHHHHH
Confidence 589999999999999999 9999999999999999876643
No 32
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=98.03 E-value=8.2e-06 Score=54.32 Aligned_cols=39 Identities=21% Similarity=0.181 Sum_probs=36.3
Q ss_pred CcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCccc
Q psy12207 22 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTL 61 (69)
Q Consensus 22 ~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~ 61 (69)
.|..|+.+.++++|++.| |+.||.|++|||+++.+...+
T Consensus 191 ~G~~v~~v~~~s~a~~aG-Lr~GDvIv~ING~~i~~~~~~ 229 (259)
T TIGR01713 191 EGYRLNPGKDPSLFYKSG-LQDGDIAVALNGLDLRDPEQA 229 (259)
T ss_pred eEEEEEecCCCCHHHHcC-CCCCCEEEEECCEEcCCHHHH
Confidence 489999999999999999 999999999999999987664
No 33
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=98.02 E-value=3.5e-06 Score=59.39 Aligned_cols=38 Identities=18% Similarity=0.124 Sum_probs=35.1
Q ss_pred EEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcccc
Q psy12207 24 IYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTLG 62 (69)
Q Consensus 24 i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~~ 62 (69)
.+|..|.++|||+++| +++||+|+++||+++.+.+.++
T Consensus 128 ~lV~~V~~~SpA~kAG-Lk~GDvI~~vnG~~V~~~~~l~ 165 (449)
T PRK10779 128 PVVGEIAPNSIAAQAQ-IAPGTELKAVDGIETPDWDAVR 165 (449)
T ss_pred ccccccCCCCHHHHcC-CCCCCEEEEECCEEcCCHHHHH
Confidence 4799999999999999 9999999999999999887754
No 34
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=98.02 E-value=1.2e-05 Score=55.83 Aligned_cols=36 Identities=25% Similarity=0.452 Sum_probs=33.8
Q ss_pred cEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCc
Q psy12207 23 GIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGP 59 (69)
Q Consensus 23 ~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~ 59 (69)
++.|..+.+++||+++| |++||+|++|||+++.+.+
T Consensus 103 g~~V~~V~~~SPA~~aG-l~~GD~Iv~InG~~v~~~~ 138 (389)
T PLN00049 103 GLVVVAPAPGGPAARAG-IRPGDVILAIDGTSTEGLS 138 (389)
T ss_pred cEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCC
Confidence 79999999999999999 9999999999999998753
No 35
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=98.01 E-value=6e-06 Score=57.93 Aligned_cols=49 Identities=31% Similarity=0.493 Sum_probs=41.1
Q ss_pred cCCCCCCCCCC-CcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207 11 GGIGNQHIPGD-NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT 60 (69)
Q Consensus 11 GG~~~~~~~~~-~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~ 60 (69)
+|++......+ ..+.|.++.+++||+++| +++||.|+.|||.++.+++.
T Consensus 100 ~GiG~~i~~~~~~~~~V~s~~~~~PA~kag-i~~GD~I~~IdG~~~~~~~~ 149 (406)
T COG0793 100 GGIGIELQMEDIGGVKVVSPIDGSPAAKAG-IKPGDVIIKIDGKSVGGVSL 149 (406)
T ss_pred cceeEEEEEecCCCcEEEecCCCChHHHcC-CCCCCEEEEECCEEccCCCH
Confidence 35554444444 689999999999999999 99999999999999998873
No 36
>PRK10139 serine endoprotease; Provisional
Probab=98.00 E-value=9.6e-06 Score=57.54 Aligned_cols=40 Identities=28% Similarity=0.457 Sum_probs=36.5
Q ss_pred CcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcccc
Q psy12207 22 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTLG 62 (69)
Q Consensus 22 ~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~~ 62 (69)
.+++|..+.+++||+++| |++||+|++||++++.+...+.
T Consensus 390 ~Gv~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~~~~~~ 429 (455)
T PRK10139 390 KGIKIDEVVKGSPAAQAG-LQKDDVIIGVNRDRVNSIAEMR 429 (455)
T ss_pred CceEEEEeCCCChHHHcC-CCCCCEEEEECCEEcCCHHHHH
Confidence 479999999999999999 9999999999999999876643
No 37
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=97.98 E-value=8.2e-06 Score=57.21 Aligned_cols=39 Identities=13% Similarity=0.231 Sum_probs=35.4
Q ss_pred CcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCccc
Q psy12207 22 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTL 61 (69)
Q Consensus 22 ~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~ 61 (69)
.+..|..|.+++||+++| |++||+|++|||+++.+...+
T Consensus 203 ~g~vV~~V~~~SpA~~aG-L~~GD~Iv~Vng~~V~s~~dl 241 (420)
T TIGR00054 203 IEPVLSDVTPNSPAEKAG-LKEGDYIQSINGEKLRSWTDF 241 (420)
T ss_pred cCcEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCHHHH
Confidence 368999999999999999 999999999999999876653
No 38
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=97.96 E-value=1.4e-05 Score=56.42 Aligned_cols=38 Identities=24% Similarity=0.406 Sum_probs=34.8
Q ss_pred cEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCccc
Q psy12207 23 GIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTL 61 (69)
Q Consensus 23 ~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~ 61 (69)
+..|..|.++|||+++| |++||+|++|||+++.+...+
T Consensus 222 ~~vV~~V~~~SpA~~AG-L~~GDvIl~Ing~~V~s~~dl 259 (449)
T PRK10779 222 EPVLAEVQPNSAASKAG-LQAGDRIVKVDGQPLTQWQTF 259 (449)
T ss_pred CcEEEeeCCCCHHHHcC-CCCCCEEEEECCEEcCCHHHH
Confidence 47899999999999999 999999999999999886654
No 39
>PRK10942 serine endoprotease; Provisional
Probab=97.90 E-value=1.5e-05 Score=56.80 Aligned_cols=40 Identities=28% Similarity=0.410 Sum_probs=36.8
Q ss_pred CcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcccc
Q psy12207 22 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTLG 62 (69)
Q Consensus 22 ~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~~ 62 (69)
.+++|+.+.++++|+++| |++||+|++||++++.+...+.
T Consensus 408 ~gvvV~~V~~~S~A~~aG-L~~GDvIv~VNg~~V~s~~dl~ 447 (473)
T PRK10942 408 KGVVVDNVKPGTPAAQIG-LKKGDVIIGANQQPVKNIAELR 447 (473)
T ss_pred CCeEEEEeCCCChHHHcC-CCCCCEEEEECCEEcCCHHHHH
Confidence 479999999999999999 9999999999999999877654
No 40
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=97.84 E-value=1.5e-05 Score=55.90 Aligned_cols=40 Identities=15% Similarity=0.264 Sum_probs=36.4
Q ss_pred CcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcccc
Q psy12207 22 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTLG 62 (69)
Q Consensus 22 ~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~~ 62 (69)
.+.+|..+.+++||+++| +++||+|+++||+++.+...+.
T Consensus 128 ~g~~V~~V~~~SpA~~AG-L~~GDvI~~vng~~v~~~~dl~ 167 (420)
T TIGR00054 128 VGPVIELLDKNSIALEAG-IEPGDEILSVNGNKIPGFKDVR 167 (420)
T ss_pred CCceeeccCCCCHHHHcC-CCCCCEEEEECCEEcCCHHHHH
Confidence 478899999999999999 9999999999999999877654
No 41
>KOG3542|consensus
Probab=97.84 E-value=7.4e-06 Score=61.34 Aligned_cols=50 Identities=24% Similarity=0.561 Sum_probs=45.8
Q ss_pred CceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207 5 PIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT 60 (69)
Q Consensus 5 lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~ 60 (69)
|-|++.||-..-. +|||..|.|++.|++.| ++.||+|++|||+..++++.
T Consensus 550 l~f~L~GGsEkGf-----gifV~~V~pgskAa~~G-lKRgDqilEVNgQnfenis~ 599 (1283)
T KOG3542|consen 550 LMFRLVGGSEKGF-----GIFVAEVFPGSKAAREG-LKRGDQILEVNGQNFENISA 599 (1283)
T ss_pred ceeEeccCccccc-----eeEEeeecCCchHHHhh-hhhhhhhhhccccchhhhhH
Confidence 4588999987665 99999999999999999 99999999999999999887
No 42
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=97.75 E-value=1.5e-05 Score=56.50 Aligned_cols=36 Identities=17% Similarity=0.328 Sum_probs=32.1
Q ss_pred EEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcccc
Q psy12207 26 VTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTLG 62 (69)
Q Consensus 26 I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~~ 62 (69)
|..|.|+|+|+++| |++||+|++|||+.+.+...++
T Consensus 2 I~~V~pgSpAe~AG-Le~GD~IlsING~~V~Dw~D~~ 37 (433)
T TIGR03279 2 ISAVLPGSIAEELG-FEPGDALVSINGVAPRDLIDYQ 37 (433)
T ss_pred cCCcCCCCHHHHcC-CCCCCEEEEECCEECCCHHHHH
Confidence 56789999999999 9999999999999998866643
No 43
>PRK11186 carboxy-terminal protease; Provisional
Probab=97.65 E-value=3.5e-05 Score=57.10 Aligned_cols=45 Identities=29% Similarity=0.505 Sum_probs=34.1
Q ss_pred CCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEEC--CEEcC
Q psy12207 12 GIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVR--NSTVS 56 (69)
Q Consensus 12 G~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vn--g~~~~ 56 (69)
|+|......+..++|..+.++|||++++.|++||+|++|| |.++.
T Consensus 245 GIGa~l~~~~~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~ 291 (667)
T PRK11186 245 GIGAVLQMDDDYTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIV 291 (667)
T ss_pred EEEEEEEEeCCeEEEEEccCCChHHHhCCCCCCCEEEEECCCCCccc
Confidence 4554433344579999999999999983399999999999 44433
No 44
>KOG3605|consensus
Probab=97.52 E-value=3.8e-05 Score=56.97 Aligned_cols=52 Identities=23% Similarity=0.472 Sum_probs=43.0
Q ss_pred CceEEe-cCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207 5 PIYNIA-GGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT 60 (69)
Q Consensus 5 lG~~i~-GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~ 60 (69)
||..|+ .|++.-. .-++|....++|||++.|+|-+||+|++|||+++..+++
T Consensus 659 LGVViVESGWGSmL----PTVViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLPL 711 (829)
T KOG3605|consen 659 LGVVIVESGWGSIL----PTVVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLPL 711 (829)
T ss_pred eeEEEEecCccccc----hHHHHHhcccCChhhhcCCccccceeEeecCceeccccH
Confidence 566544 4777533 257888899999999999999999999999999999887
No 45
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=97.51 E-value=0.0002 Score=43.84 Aligned_cols=55 Identities=15% Similarity=0.090 Sum_probs=35.6
Q ss_pred cCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCC-CCEEEEECCEEcCCCccc
Q psy12207 4 APIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQV-GDKLIAVRNSTVSKGPTL 61 (69)
Q Consensus 4 ~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~-gD~il~vng~~~~~~~~~ 61 (69)
.||+++.=-.-. ...+..+-|.+|.|+|||+.+| |++ .|.|+.+++..+.+...+
T Consensus 27 ~LG~sv~~~~~~--~~~~~~~~Vl~V~p~SPA~~AG-L~p~~DyIig~~~~~l~~~~~l 82 (138)
T PF04495_consen 27 LLGISVRFESFE--GAEEEGWHVLRVAPNSPAAKAG-LEPFFDYIIGIDGGLLDDEDDL 82 (138)
T ss_dssp SS-EEEEEEE-T--TGCCCEEEEEEE-TTSHHHHTT---TTTEEEEEETTCE--STCHH
T ss_pred CCcEEEEEeccc--ccccceEEEeEecCCCHHHHCC-ccccccEEEEccceecCCHHHH
Confidence 356665532222 1234588999999999999999 887 699999999888866553
No 46
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.00049 Score=46.82 Aligned_cols=41 Identities=27% Similarity=0.393 Sum_probs=37.1
Q ss_pred CCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcccc
Q psy12207 21 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTLG 62 (69)
Q Consensus 21 ~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~~ 62 (69)
..+++|..+.+++||+++| ++.||.|+++||.++.+...+.
T Consensus 269 ~~G~~V~~v~~~spa~~ag-i~~Gdii~~vng~~v~~~~~l~ 309 (347)
T COG0265 269 AAGAVVLGVLPGSPAAKAG-IKAGDIITAVNGKPVASLSDLV 309 (347)
T ss_pred CCceEEEecCCCChHHHcC-CCCCCEEEEECCEEccCHHHHH
Confidence 4579999999999999999 9999999999999999876644
No 47
>KOG0609|consensus
Probab=97.00 E-value=0.00049 Score=49.96 Aligned_cols=38 Identities=34% Similarity=0.620 Sum_probs=35.6
Q ss_pred cEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207 23 GIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT 60 (69)
Q Consensus 23 ~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~ 60 (69)
.++|.++..||.+++.|.|+.||+|.++||+++.+.+-
T Consensus 147 ~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~ 184 (542)
T KOG0609|consen 147 KVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSP 184 (542)
T ss_pred ccEEeeeccCCcchhccceeeccchheecCeecccCCH
Confidence 69999999999999999999999999999999988743
No 48
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=96.97 E-value=0.00071 Score=47.79 Aligned_cols=40 Identities=18% Similarity=0.420 Sum_probs=32.3
Q ss_pred CCcEEEEEeC--------CCChhhccCCCCCCCEEEEECCEEcCCCccc
Q psy12207 21 DNGIYVTKIM--------DGGAAQVDGRLQVGDKLIAVRNSTVSKGPTL 61 (69)
Q Consensus 21 ~~~i~I~~v~--------~~g~a~~~grl~~gD~il~vng~~~~~~~~~ 61 (69)
..+++|.... ..+||+.+| |++||.|++||++++.+...+
T Consensus 104 t~GVlVvg~~~v~~~~g~~~SPAa~AG-Lq~GDiIvsING~~V~s~~DL 151 (402)
T TIGR02860 104 TKGVLVVGFSDIETEKGKIHSPGEEAG-IQIGDRILKINGEKIKNMDDL 151 (402)
T ss_pred cCEEEEEEEEcccccCCCCCCHHHHcC-CCCCCEEEEECCEECCCHHHH
Confidence 3577776542 358999999 999999999999999887664
No 49
>KOG3605|consensus
Probab=96.96 E-value=0.00059 Score=50.87 Aligned_cols=34 Identities=26% Similarity=0.648 Sum_probs=30.3
Q ss_pred EEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207 26 VTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT 60 (69)
Q Consensus 26 I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~ 60 (69)
|=+...+|.|+|.| +|+|.+|++|||+++...++
T Consensus 760 ICSLlRGGIAERGG-VRVGHRIIEINgQSVVA~pH 793 (829)
T KOG3605|consen 760 ICSLLRGGIAERGG-VRVGHRIIEINGQSVVATPH 793 (829)
T ss_pred eehhhcccchhccC-ceeeeeEEEECCceEEeccH
Confidence 45678899999999 99999999999999987766
No 50
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=96.94 E-value=0.0012 Score=48.10 Aligned_cols=34 Identities=29% Similarity=0.454 Sum_probs=31.0
Q ss_pred CCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCE
Q psy12207 19 PGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNS 53 (69)
Q Consensus 19 ~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~ 53 (69)
.......|+.|.++|||+++| |.+||.|+.|||.
T Consensus 459 ~~~g~~~i~~V~~~gPA~~AG-l~~Gd~ivai~G~ 492 (558)
T COG3975 459 SEGGHEKITFVFPGGPAYKAG-LSPGDKIVAINGI 492 (558)
T ss_pred ccCCeeEEEecCCCChhHhcc-CCCccEEEEEcCc
Confidence 344578999999999999999 9999999999999
No 51
>KOG3129|consensus
Probab=96.84 E-value=0.0018 Score=42.50 Aligned_cols=37 Identities=24% Similarity=0.285 Sum_probs=31.1
Q ss_pred CcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCc
Q psy12207 22 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGP 59 (69)
Q Consensus 22 ~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~ 59 (69)
.-++|.+|.|+|||+++| |+.||.|+++...--.|..
T Consensus 139 ~Fa~V~sV~~~SPA~~aG-l~~gD~il~fGnV~sgn~~ 175 (231)
T KOG3129|consen 139 PFAVVDSVVPGSPADEAG-LCVGDEILKFGNVHSGNFL 175 (231)
T ss_pred ceEEEeecCCCChhhhhC-cccCceEEEecccccccch
Confidence 357999999999999999 9999999998766555444
No 52
>KOG1320|consensus
Probab=96.53 E-value=0.0035 Score=45.18 Aligned_cols=37 Identities=22% Similarity=0.362 Sum_probs=35.1
Q ss_pred cEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207 23 GIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT 60 (69)
Q Consensus 23 ~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~ 60 (69)
.+++++|+++++++..+ +..||+|..|||+++.|..+
T Consensus 399 ~v~is~Vlp~~~~~~~~-~~~g~~V~~vng~~V~n~~~ 435 (473)
T KOG1320|consen 399 LVLVSQVLPGSINGGYG-LKPGDQVVKVNGKPVKNLKH 435 (473)
T ss_pred EEEEEEeccCCCccccc-ccCCCEEEEECCEEeechHH
Confidence 58999999999999998 99999999999999999877
No 53
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=95.70 E-value=0.013 Score=40.65 Aligned_cols=38 Identities=32% Similarity=0.648 Sum_probs=34.2
Q ss_pred CcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCccc
Q psy12207 22 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTL 61 (69)
Q Consensus 22 ~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~ 61 (69)
.++|+..+..++++ .|.|..||.|++|||+++++...+
T Consensus 130 ~gvyv~~v~~~~~~--~gkl~~gD~i~avdg~~f~s~~e~ 167 (342)
T COG3480 130 AGVYVLSVIDNSPF--KGKLEAGDTIIAVDGEPFTSSDEL 167 (342)
T ss_pred eeEEEEEccCCcch--hceeccCCeEEeeCCeecCCHHHH
Confidence 48999999999999 668999999999999999987763
No 54
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=95.35 E-value=0.021 Score=32.54 Aligned_cols=37 Identities=22% Similarity=0.463 Sum_probs=23.1
Q ss_pred CcEEEEEeCCC--------ChhhccC-CCCCCCEEEEECCEEcCCC
Q psy12207 22 NGIYVTKIMDG--------GAAQVDG-RLQVGDKLIAVRNSTVSKG 58 (69)
Q Consensus 22 ~~i~I~~v~~~--------g~a~~~g-rl~~gD~il~vng~~~~~~ 58 (69)
....|.++.++ ||..+-| .+++||.|++|||+++..-
T Consensus 12 ~~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~~~ 57 (88)
T PF14685_consen 12 GGYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVTAD 57 (88)
T ss_dssp TEEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-BTT
T ss_pred CEEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECCCC
Confidence 46778888886 4555544 3569999999999999753
No 55
>KOG3938|consensus
Probab=95.31 E-value=0.0075 Score=41.11 Aligned_cols=50 Identities=20% Similarity=0.290 Sum_probs=41.9
Q ss_pred CcCceEEec-CCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207 3 IAPIYNIAG-GIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT 60 (69)
Q Consensus 3 ~~lG~~i~G-G~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~ 60 (69)
.+||++|.. |.+ -.||.++.++|.-.+-..+++||.|-+|||+++-.+.+
T Consensus 137 dalGlTITDNG~G--------yAFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RH 187 (334)
T KOG3938|consen 137 DALGLTITDNGAG--------YAFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRH 187 (334)
T ss_pred cccceEEeeCCcc--------eeeeEeecCCchhhhhhheeHHhHHHhhcCccccchhH
Confidence 467887764 333 57999999999999887899999999999999988766
No 56
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=95.28 E-value=0.018 Score=38.96 Aligned_cols=36 Identities=19% Similarity=0.296 Sum_probs=28.2
Q ss_pred EEEEEeCCCChh---hccCCCCCCCEEEEECCEEcCCCcc
Q psy12207 24 IYVTKIMDGGAA---QVDGRLQVGDKLIAVRNSTVSKGPT 60 (69)
Q Consensus 24 i~I~~v~~~g~a---~~~grl~~gD~il~vng~~~~~~~~ 60 (69)
+.=.++.|+..+ ...| |+.||.+++|||.+++++.+
T Consensus 206 l~GYrl~Pgkd~~lF~~~G-Lq~GDva~sING~dL~D~~q 244 (276)
T PRK09681 206 IVGYAVKPGADRSLFDASG-FKEGDIAIALNQQDFTDPRA 244 (276)
T ss_pred ceEEEECCCCcHHHHHHcC-CCCCCEEEEeCCeeCCCHHH
Confidence 445556666544 4477 99999999999999998875
No 57
>KOG1738|consensus
Probab=93.62 E-value=0.1 Score=38.95 Aligned_cols=38 Identities=18% Similarity=0.260 Sum_probs=33.4
Q ss_pred cEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207 23 GIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT 60 (69)
Q Consensus 23 ~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~ 60 (69)
..+|+.+.+++||+....|..||.+++||++-+....+
T Consensus 226 ~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwql 263 (638)
T KOG1738|consen 226 PHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQL 263 (638)
T ss_pred ceeccccccCChHHHhhcccCccceeeecccccccchh
Confidence 57889999999999999999999999999988765443
No 58
>KOG3532|consensus
Probab=93.53 E-value=0.11 Score=39.63 Aligned_cols=40 Identities=20% Similarity=0.347 Sum_probs=35.1
Q ss_pred CCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207 20 GDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT 60 (69)
Q Consensus 20 ~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~ 60 (69)
++..+-|-.|.+.++|.++. +.+||.+++||+.+++...+
T Consensus 396 ~~~~v~v~tv~~ns~a~k~~-~~~gdvlvai~~~pi~s~~q 435 (1051)
T KOG3532|consen 396 TNRAVKVCTVEDNSLADKAA-FKPGDVLVAINNVPIRSERQ 435 (1051)
T ss_pred CceEEEEEEecCCChhhHhc-CCCcceEEEecCccchhHHH
Confidence 44567889999999999998 99999999999999987554
No 59
>PF12812 PDZ_1: PDZ-like domain
Probab=93.12 E-value=0.13 Score=28.49 Aligned_cols=40 Identities=15% Similarity=0.117 Sum_probs=33.2
Q ss_pred cEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCccccc
Q psy12207 23 GIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTLGY 63 (69)
Q Consensus 23 ~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~~~~ 63 (69)
+.++.....++++...+ +..+-.|.+||+++..|+..+.+
T Consensus 31 ~gv~v~~~~g~~~~~~~-i~~g~iI~~Vn~kpt~~Ld~f~~ 70 (78)
T PF12812_consen 31 GGVYVAVSGGSLAFAGG-ISKGFIITSVNGKPTPDLDDFIK 70 (78)
T ss_pred CEEEEEecCCChhhhCC-CCCCeEEEeECCcCCcCHHHHHH
Confidence 46777778888888776 99999999999999998877543
No 60
>KOG1421|consensus
Probab=92.63 E-value=0.1 Score=39.85 Aligned_cols=36 Identities=25% Similarity=0.409 Sum_probs=31.1
Q ss_pred cEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207 23 GIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT 60 (69)
Q Consensus 23 ~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~ 60 (69)
-+.|..+.++|||++ .|++||.+++||++.+.++-.
T Consensus 304 mLvV~~vL~~gpa~k--~Le~GDillavN~t~l~df~~ 339 (955)
T KOG1421|consen 304 MLVVETVLPEGPAEK--KLEPGDILLAVNSTCLNDFEA 339 (955)
T ss_pred eEEEEEeccCCchhh--ccCCCcEEEEEcceehHHHHH
Confidence 457888999999988 599999999999998877654
No 61
>KOG2921|consensus
Probab=91.75 E-value=0.19 Score=36.14 Aligned_cols=40 Identities=23% Similarity=0.258 Sum_probs=34.9
Q ss_pred CCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207 21 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT 60 (69)
Q Consensus 21 ~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~ 60 (69)
..++.|+.+...||+.--..|.+||.|.++||.++++.+.
T Consensus 219 g~gV~Vtev~~~Spl~gprGL~vgdvitsldgcpV~~v~d 258 (484)
T KOG2921|consen 219 GEGVTVTEVPSVSPLFGPRGLSVGDVITSLDGCPVHKVSD 258 (484)
T ss_pred CceEEEEeccccCCCcCcccCCccceEEecCCcccCCHHH
Confidence 3489999999999987655599999999999999998877
No 62
>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]
Probab=90.20 E-value=0.43 Score=32.52 Aligned_cols=32 Identities=28% Similarity=0.466 Sum_probs=29.7
Q ss_pred EeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207 28 KIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT 60 (69)
Q Consensus 28 ~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~ 60 (69)
.+...+++..++ +++||+++++|+..+.+...
T Consensus 135 ~v~~~s~a~~a~-l~~Gd~iv~~~~~~i~~~~~ 166 (375)
T COG0750 135 EVAPKSAAALAG-LRPGDRIVAVDGEKVASWDD 166 (375)
T ss_pred ecCCCCHHHHcC-CCCCCEEEeECCEEccCHHH
Confidence 789999999999 99999999999999998765
No 63
>KOG0606|consensus
Probab=89.80 E-value=0.31 Score=38.68 Aligned_cols=37 Identities=24% Similarity=0.246 Sum_probs=32.9
Q ss_pred cEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207 23 GIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT 60 (69)
Q Consensus 23 ~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~ 60 (69)
.-.|-+|.+++||..+| ++.+|.|+.+||+++.+..+
T Consensus 659 hh~v~sv~egsPA~~ag-ls~~DlIthvnge~v~gl~H 695 (1205)
T KOG0606|consen 659 HHSVGSVEEGSPAFEAG-LSAGDLITHVNGEPVHGLVH 695 (1205)
T ss_pred eeeeeeecCCCCccccC-CCccceeEeccCcccchhhH
Confidence 35788899999999998 99999999999999987655
No 64
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=85.72 E-value=0.81 Score=30.95 Aligned_cols=28 Identities=29% Similarity=0.385 Sum_probs=23.2
Q ss_pred CChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207 32 GGAAQVDGRLQVGDKLIAVRNSTVSKGPT 60 (69)
Q Consensus 32 ~g~a~~~grl~~gD~il~vng~~~~~~~~ 60 (69)
++.-+..| ||.||..+++|+.++++...
T Consensus 217 ~slF~~sg-lq~GDIavaiNnldltdp~~ 244 (275)
T COG3031 217 GSLFYKSG-LQRGDIAVAINNLDLTDPED 244 (275)
T ss_pred cchhhhhc-CCCcceEEEecCcccCCHHH
Confidence 35556677 99999999999999998654
No 65
>KOG4407|consensus
Probab=78.91 E-value=0.82 Score=37.40 Aligned_cols=37 Identities=24% Similarity=0.508 Sum_probs=32.7
Q ss_pred CcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCc
Q psy12207 22 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGP 59 (69)
Q Consensus 22 ~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~ 59 (69)
.-+||..|.+.+|++.+. ||.||+++.||..++-.+.
T Consensus 143 eT~~~~eV~~n~~~~~a~-LQ~~~~V~~v~~q~~A~i~ 179 (1973)
T KOG4407|consen 143 ETIFIKEVQANGPAHYAN-LQTGDRVLMVNNQPIAGIA 179 (1973)
T ss_pred hhhhhhhhccCChhHHHh-hhccceeEEeecCcccchh
Confidence 368999999999999998 9999999999998886543
No 66
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=77.18 E-value=4.8 Score=25.88 Aligned_cols=31 Identities=16% Similarity=0.261 Sum_probs=26.7
Q ss_pred CCCcEEEEEeCCCChhhccCCCCCCCEEEEEC
Q psy12207 20 GDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVR 51 (69)
Q Consensus 20 ~~~~i~I~~v~~~g~a~~~grl~~gD~il~vn 51 (69)
.+..+.|..+..+|+|+++| +..+.+|.++-
T Consensus 120 e~~~~~Vd~v~fgS~A~~~g-~d~d~~I~~v~ 150 (183)
T PF11874_consen 120 EGGKVIVDEVEFGSPAEKAG-IDFDWEITEVE 150 (183)
T ss_pred eCCEEEEEecCCCCHHHHcC-CCCCcEEEEEE
Confidence 44579999999999999999 99999887764
No 67
>KOG3834|consensus
Probab=74.83 E-value=2.6 Score=30.54 Aligned_cols=37 Identities=19% Similarity=0.298 Sum_probs=32.0
Q ss_pred CCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcC
Q psy12207 20 GDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVS 56 (69)
Q Consensus 20 ~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~ 56 (69)
+..+.-|-+|.++++|+++|-.---|.|.+|||..+.
T Consensus 13 gteg~hvlkVqedSpa~~aglepffdFIvSI~g~rL~ 49 (462)
T KOG3834|consen 13 GTEGYHVLKVQEDSPAHKAGLEPFFDFIVSINGIRLN 49 (462)
T ss_pred CceeEEEEEeecCChHHhcCcchhhhhhheeCccccc
Confidence 3457899999999999999955677889999999997
No 68
>KOG1421|consensus
Probab=70.73 E-value=5.3 Score=30.99 Aligned_cols=37 Identities=24% Similarity=0.240 Sum_probs=33.2
Q ss_pred CcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207 22 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT 60 (69)
Q Consensus 22 ~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~ 60 (69)
.++|++..-.++||.. + |+.-..|..|||+...++..
T Consensus 862 ~gvyvt~rg~gspalq-~-l~aa~fitavng~~t~~ldd 898 (955)
T KOG1421|consen 862 EGVYVTSRGYGSPALQ-M-LRAAHFITAVNGHDTNTLDD 898 (955)
T ss_pred CceEEeecccCChhHh-h-cchheeEEEecccccCcHHH
Confidence 4899999999999988 5 99999999999999877654
No 69
>KOG1945|consensus
Probab=59.67 E-value=9.4 Score=27.14 Aligned_cols=58 Identities=29% Similarity=0.436 Sum_probs=46.2
Q ss_pred CcCceEEec-CCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207 3 IAPIYNIAG-GIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT 60 (69)
Q Consensus 3 ~~lG~~i~G-G~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~ 60 (69)
..+|+++.| +++....-.+.++++.+..+++.-++.++..+-|...++.+..+.-++.
T Consensus 110 ~g~g~~~~~~~~gkk~~~~e~~~~~~sa~sg~~~~r~g~~sved~~~s~~~k~lp~vp~ 168 (377)
T KOG1945|consen 110 EGLGVSIIGMGVGKKSGLEELGIFVKSATSGGAVHRDGRWSVEDVEVSVDSKSLPGVPF 168 (377)
T ss_pred CCCCccccccccchhccchhhcceeecccccccccccccccccccccccccCCCCCcch
Confidence 457787777 4445555566789999999999999999999999999988877765555
No 70
>cd02194 ThiL ThiL (Thiamine-monophosphate kinase) plays a dual role in de novo biosynthesis and in salvage of exogenous thiamine. Thiamine salvage occurs in two steps, with thiamine kinase catalyzing the formation of thiamine phosphate, and ThiL catalyzing the conversion of this intermediate to thiamine pyrophosphate. The N-terminal domain of ThiL binds ATP and is related to the ATP-binding domains of hydrogen expression/formation protein HypE, the AIR synthases, FGAM synthase and selenophosphate synthetase (SelD).
Probab=52.99 E-value=30 Score=22.85 Aligned_cols=51 Identities=12% Similarity=-0.014 Sum_probs=31.8
Q ss_pred CCcCceEEecCCCCCCCCCCCcEEEEEeCCC-ChhhccCCCCCCCEEEEECCE
Q psy12207 2 CIAPIYNIAGGIGNQHIPGDNGIYVTKIMDG-GAAQVDGRLQVGDKLIAVRNS 53 (69)
Q Consensus 2 ~~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~-g~a~~~grl~~gD~il~vng~ 53 (69)
|+.+|+.+.||-..........+.+.-..+. .+..+.+ .++||.|+-....
T Consensus 107 ~~~~g~~liGGdt~~~~~~~i~vt~iG~~~~~~~~~~~~-a~~GD~I~ltg~~ 158 (291)
T cd02194 107 ADRYGVPLVGGDTTSGSELVISVTALGEVEKGKPLRRSG-AKPGDLLYVTGTL 158 (291)
T ss_pred HHHcCCeEEcccCCCCCCeEEEEEEEEecCCCCceecCC-CCCCCEEEEeCCc
Confidence 6678999999965433222223333444444 4566666 7999999877653
No 71
>KOG4407|consensus
Probab=52.93 E-value=11 Score=31.41 Aligned_cols=38 Identities=5% Similarity=-0.023 Sum_probs=33.5
Q ss_pred CcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207 22 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT 60 (69)
Q Consensus 22 ~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~ 60 (69)
.-+++.++..++++..+| +..+|.|..|||.....++-
T Consensus 96 ~s~~~~Q~~s~~~~~nsG-~~s~~~v~~itG~e~~~~TS 133 (1973)
T KOG4407|consen 96 VSTNWPQEASSAAGSNSG-SSSSVGVAGITGLEPTSPTS 133 (1973)
T ss_pred cccccchhcccCcccccC-cccccceeeecccccCCCcc
Confidence 357888999999999999 99999999999999987654
No 72
>KOG4371|consensus
Probab=50.98 E-value=24 Score=28.77 Aligned_cols=41 Identities=29% Similarity=0.549 Sum_probs=35.9
Q ss_pred CCCcEEEEEeCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207 20 GDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT 60 (69)
Q Consensus 20 ~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~~~~~ 60 (69)
-..++++..+...+.|.-.|++++||++...+++++..+.-
T Consensus 1268 ~s~~~~~~~~~~~~~a~~~~~~r~g~~~~~~~~~~~~~~~p 1308 (1332)
T KOG4371|consen 1268 MSDGIFIRNIAQDSAASSEGTLRVGDRLVSLDGEPVDGFTP 1308 (1332)
T ss_pred cCCceeeecccccccccccccccccceeeccCCccCCCCCh
Confidence 34589999999999999999999999999999999876543
No 73
>COG5233 GRH1 Peripheral Golgi membrane protein [Intracellular trafficking and secretion]
Probab=49.54 E-value=12 Score=26.52 Aligned_cols=32 Identities=19% Similarity=0.420 Sum_probs=27.7
Q ss_pred EEEEEeCCCChhhccCCCCCCCEEEEECCEEcC
Q psy12207 24 IYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVS 56 (69)
Q Consensus 24 i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~ 56 (69)
+-+-+|.+.++|++++ +-.||-|+-+|+-++.
T Consensus 65 l~~lrv~~~~~~e~~~-~~~~dyilg~n~Dp~~ 96 (417)
T COG5233 65 LEVLRVNPESPAEKAG-MVVGDYILGINEDPLR 96 (417)
T ss_pred hhheeccccChhHhhc-cccceeEEeecCCcHH
Confidence 4567788999999999 8999999999987764
No 74
>cd02195 SelD Selenophosphate synthetase (SelD) catalyzes the conversion of selenium to selenophosphate which is required by a number of bacterial, archaeal and eukaryotic organisms for synthesis of Secys-tRNA, the precursor of selenocysteine in selenoenzymes. The N-terminal domain of SelD is related to the ATP-binding domains of hydrogen expression/formation protein HypE, the AIR synthases, and FGAM synthase and is thought to bind ATP.
Probab=49.08 E-value=16 Score=24.38 Aligned_cols=48 Identities=21% Similarity=0.182 Sum_probs=28.1
Q ss_pred CCcCceEEecCCCCCCCCCCCcEEEEEeCCC-ChhhccCCCCCCCEEEEE
Q psy12207 2 CIAPIYNIAGGIGNQHIPGDNGIYVTKIMDG-GAAQVDGRLQVGDKLIAV 50 (69)
Q Consensus 2 ~~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~-g~a~~~grl~~gD~il~v 50 (69)
|..+|+.+.||--.........+.+.-+.+. .+..+.+ .++||.|+-.
T Consensus 123 ~~~~g~~ivGGdt~~~~~~~i~~t~~G~~~~~~~~~~~~-a~~GD~I~lt 171 (287)
T cd02195 123 LREAGAVLVGGHTIEGPEPKYGLSVTGLVHPNKILRNSG-AKPGDVLILT 171 (287)
T ss_pred HHHcCCcEEeeeeccCCCcEEEEEEEEEEcchheecCCC-CCCCCEEEEc
Confidence 6778999999975533111112223333333 3444455 8999999854
No 75
>KOG0792|consensus
Probab=48.34 E-value=9.3 Score=30.72 Aligned_cols=57 Identities=19% Similarity=0.309 Sum_probs=41.5
Q ss_pred cCceEEecCCCCCCCCCCCcEEEEEeC-------------CCChhhc-cCCCCCCCEEEEECCEEcCCCcc
Q psy12207 4 APIYNIAGGIGNQHIPGDNGIYVTKIM-------------DGGAAQV-DGRLQVGDKLIAVRNSTVSKGPT 60 (69)
Q Consensus 4 ~lG~~i~GG~~~~~~~~~~~i~I~~v~-------------~~g~a~~-~grl~~gD~il~vng~~~~~~~~ 60 (69)
-.||.+.||.+...-.-..+..++++. |++++.. ..++..+|+++.+||.++.....
T Consensus 717 ~~g~~~~g~~dq~~~~~~~p~a~sRv~~~~p~~~~~~~~~p~s~~d~~~P~~~e~dq~~~ingr~~~~~~~ 787 (1144)
T KOG0792|consen 717 RFGFNLKGGLDQLQNLLNEPVAVSRVAGPGPLKMNGKLSEPESTADDCTPRLNEGDQVTSINGRDVSESEH 787 (1144)
T ss_pred cccccccchhhhhhccccccHHHHhhcccccchhcccccCCCCCccccccCCCcccceeeecccccccccc
Confidence 358899999887532333467777777 7777743 55688999999999999875543
No 76
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=45.99 E-value=22 Score=25.72 Aligned_cols=36 Identities=22% Similarity=0.273 Sum_probs=30.6
Q ss_pred EEEEEeCCCChhhccCCCCCCCEEEEEC-CEEcCCCcc
Q psy12207 24 IYVTKIMDGGAAQVDGRLQVGDKLIAVR-NSTVSKGPT 60 (69)
Q Consensus 24 i~I~~v~~~g~a~~~grl~~gD~il~vn-g~~~~~~~~ 60 (69)
-.|+.+-+.+.++..| ++.+|.+..|| +....++.-
T Consensus 3 ~~i~~v~~~~~~d~~G-fe~~~~l~~Vn~~~~~~~c~~ 39 (414)
T COG1625 3 AKISKVGGISGADCDG-FEEGDYLLKVNPGFGCKDCIP 39 (414)
T ss_pred cceeeccCCCcccccC-ccccceeeecCCCCCCCcCCC
Confidence 4578888999999999 99999999999 777776654
No 77
>TIGR00476 selD selenium donor protein. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelD, known as selenophosphate synthetase, selenium donor protein, and selenide,water dikinase. SelD provides reduced selenium for the selenium transferase SelA. This protein itself contains selenocysteine in many species; any sequence not aligning to the beginning of the model is likely have selenocysteine residue incorrectly interpreted as a stop codon upstream of the given sequence. The SelD protein also provides selenophosphate for the enzyme tRNA 2-selenouridine synthase, which catalyz
Probab=45.46 E-value=20 Score=24.59 Aligned_cols=49 Identities=27% Similarity=0.220 Sum_probs=29.4
Q ss_pred CCcCceEEecCCCCCCCCCCCcEEEEEeCC-CChhhccCCCCCCCEEEEEC
Q psy12207 2 CIAPIYNIAGGIGNQHIPGDNGIYVTKIMD-GGAAQVDGRLQVGDKLIAVR 51 (69)
Q Consensus 2 ~~~lG~~i~GG~~~~~~~~~~~i~I~~v~~-~g~a~~~grl~~gD~il~vn 51 (69)
|+.+|..+.||--.........+.+.-+.+ +.+..+.+ .++||.|+-..
T Consensus 130 ~~~~g~~lvGGdT~~~~~~~i~~t~~G~~~~~~~i~~~~-ak~GD~Iiltg 179 (347)
T TIGR00476 130 CREAGTSLTGGHTILNPWPVFGGAVTGVCPEEEVITPSG-AQVGDVLILTK 179 (347)
T ss_pred HHHcCCCeEeeeeecCCcCEEEEEEEEEECccceecCCC-CCCCCEEEEEC
Confidence 566789999997543211112233444443 34455666 99999998765
No 78
>COG2144 Selenophosphate synthetase-related proteins [General function prediction only]
Probab=44.20 E-value=56 Score=22.92 Aligned_cols=58 Identities=16% Similarity=0.107 Sum_probs=35.4
Q ss_pred CcCceEEecCCCCCCC-CCCCcEEEEEeCCCChhhccCCCCCCCEEEE---ECCEEcCCCcc
Q psy12207 3 IAPIYNIAGGIGNQHI-PGDNGIYVTKIMDGGAAQVDGRLQVGDKLIA---VRNSTVSKGPT 60 (69)
Q Consensus 3 ~~lG~~i~GG~~~~~~-~~~~~i~I~~v~~~g~a~~~grl~~gD~il~---vng~~~~~~~~ 60 (69)
.+||.-|.||--.+.. ..-..+.|..+...-+--+++.-++||.++. .+|++-.+.|+
T Consensus 121 ~kfgvpivGGhthpd~~y~vl~v~i~gl~~~e~Ii~s~~Ak~GD~lI~~~d~~g~~~p~~P~ 182 (324)
T COG2144 121 RKFGVPIVGGHTHPDTPYCVLDVVIGGLIAEEPIITSGTAKPGDLLIFVGDLDGKPYPNFPL 182 (324)
T ss_pred HhcCCceecCccCCCCCCceeeeEEecccccccccccCCCCcCCEEEEEeccCCCcCCCCCc
Confidence 4678889999433321 1122334444445555555666899999975 44677766665
No 79
>TIGR01379 thiL thiamine-monophosphate kinase. Proteins scoring between the trusted and noise cutoff for this model include short forms from the Thermoplasmas (which lack the N-terminal region) and a highly derived form from Campylobacter jejuni. Eukaryotes lack this enzyme, and add pyrophosphate from ATP to unphosphorylated thiamine in a single step.
Probab=42.91 E-value=54 Score=22.03 Aligned_cols=50 Identities=14% Similarity=0.001 Sum_probs=29.0
Q ss_pred CCcCceEEecCCCCCCCCCCCcEEEEEeCCCC-hhhccCCCCCCCEEEEECC
Q psy12207 2 CIAPIYNIAGGIGNQHIPGDNGIYVTKIMDGG-AAQVDGRLQVGDKLIAVRN 52 (69)
Q Consensus 2 ~~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g-~a~~~grl~~gD~il~vng 52 (69)
|+.+|..+.||--.........+.+.-..+.. +..+.+ .++||.|+-+..
T Consensus 108 ~~~~g~~ivGG~t~~~~~~~i~vt~iG~~~~~~~~~~~~-a~~Gd~I~ltg~ 158 (317)
T TIGR01379 108 AKQYGVPLVGGDTVSSPELVVTVTAIGEAPKGRALLRSG-AKPGDLVFVTGT 158 (317)
T ss_pred HHHcCCeEECccCCCCCCcEEEEEEEEEeCCCCceecCC-CCCCCEEEEcCc
Confidence 66789999999644331111122333333333 355555 799999987754
No 80
>PRK14105 selenophosphate synthetase; Provisional
Probab=41.85 E-value=32 Score=23.57 Aligned_cols=49 Identities=24% Similarity=0.146 Sum_probs=29.4
Q ss_pred CCcCceEEecCCCCCCCCCCCcEEEEEeCC-CChhhccCCCCCCCEEEEEC
Q psy12207 2 CIAPIYNIAGGIGNQHIPGDNGIYVTKIMD-GGAAQVDGRLQVGDKLIAVR 51 (69)
Q Consensus 2 ~~~lG~~i~GG~~~~~~~~~~~i~I~~v~~-~g~a~~~grl~~gD~il~vn 51 (69)
|+..|..+.||--......-....++-+.+ +.+-.+.+ .++||.|+--.
T Consensus 126 ~~~~gv~lvGGdT~~~~~~~l~~svtg~g~~~~~i~r~g-a~~GD~I~vTg 175 (345)
T PRK14105 126 CRENDTTIIGGHTILNPWPLIGGAVTGVGKEEDILTKAG-AKEGDVLILTK 175 (345)
T ss_pred HHHhCCEEEeeeeccCCCCEEEEEEEEEEcccceeeCCC-CCCCCEEEEeC
Confidence 556789999997543311111124454443 33455666 99999998654
No 81
>PF13752 DUF4165: Domain of unknown function (DUF4165)
Probab=40.32 E-value=36 Score=20.69 Aligned_cols=49 Identities=12% Similarity=0.186 Sum_probs=31.9
Q ss_pred eEEecCCCCCCCCCCCcEEEEEeCCC-ChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207 7 YNIAGGIGNQHIPGDNGIYVTKIMDG-GAAQVDGRLQVGDKLIAVRNSTVSKGPT 60 (69)
Q Consensus 7 ~~i~GG~~~~~~~~~~~i~I~~v~~~-g~a~~~grl~~gD~il~vng~~~~~~~~ 60 (69)
|.+.+|.+++. .+.|.+-.-. -......++...|+++..||.+......
T Consensus 37 ~~l~sGLDRkv-----rvsv~~~~~~~v~st~Ts~v~~~d~~~s~~G~efYGk~l 86 (124)
T PF13752_consen 37 FYLISGLDRKV-----RVSVTRSSGKVVYSTTTSKVLVADRRISSNGKEFYGKEL 86 (124)
T ss_pred EEEEccccceE-----EEEEEeCCCcEEEEeecceEEeeeeeEEeCCceeeeeEE
Confidence 56788888765 5555543322 1223344578899999999998876544
No 82
>PRK00943 selenophosphate synthetase; Provisional
Probab=40.23 E-value=39 Score=23.25 Aligned_cols=49 Identities=24% Similarity=0.272 Sum_probs=27.2
Q ss_pred CCcCceEEecCCCCCCCCCCCcEEEEEeCC-CChhhccCCCCCCCEEEEEC
Q psy12207 2 CIAPIYNIAGGIGNQHIPGDNGIYVTKIMD-GGAAQVDGRLQVGDKLIAVR 51 (69)
Q Consensus 2 ~~~lG~~i~GG~~~~~~~~~~~i~I~~v~~-~g~a~~~grl~~gD~il~vn 51 (69)
|...|..+.||--......--.+.+.-+.+ ..+..+.+ .++||.|+-..
T Consensus 129 ~~~~gv~lvGGdT~~~~~~~i~~t~~G~~~~~~~l~~~~-ak~GD~Iivtg 178 (347)
T PRK00943 129 CRQAGIPLAGGHSIDAPEPIFGLAVTGVVPPERVKRNAT-AQAGDKLFLTK 178 (347)
T ss_pred HHHcCCceecccccCCCCceEEEEEEEEEcCCceeeCCC-CCCCCEEEEeC
Confidence 456789999997543211111222222333 33444455 99999998653
No 83
>cd00396 PurM-like AIR (aminoimidazole ribonucleotide) synthase related protein. This family includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM (formylglycinamidine ribonucleotide) synthase and Selenophosphate synthetase (SelD). The N-terminal domain of AIR synthase forms the dimer interface of the protein, and is suggested as a putative ATP binding domain.
Probab=38.60 E-value=50 Score=20.77 Aligned_cols=49 Identities=18% Similarity=0.232 Sum_probs=28.0
Q ss_pred CCcCceEEecCCCCCCC-----CCCCcEEEEEeCCCChhh-ccCCCCCCCEEEEEC
Q psy12207 2 CIAPIYNIAGGIGNQHI-----PGDNGIYVTKIMDGGAAQ-VDGRLQVGDKLIAVR 51 (69)
Q Consensus 2 ~~~lG~~i~GG~~~~~~-----~~~~~i~I~~v~~~g~a~-~~grl~~gD~il~vn 51 (69)
|..+|+.+.||-..... +....+.+.-+.+..... +.+ .++||.|+-+.
T Consensus 68 ~~~~gi~ivgG~t~~~~~~~~~~~~i~~t~~G~~~~~~~~~~~~-~~~Gd~lv~~g 122 (222)
T cd00396 68 CNQLGVPIVGGHTSVSPGTMGHKLSLAVFAIGVVEKDRVIDSSG-ARPGDVLILTG 122 (222)
T ss_pred HHHcCCeEeceeeEEccCCcCCCceEEEEEEEEecCCccccccC-CCCCCEEEEeC
Confidence 56688889998754331 111122333344443333 344 89999998765
No 84
>PF07591 PT-HINT: Pretoxin HINT domain; InterPro: IPR011451 This entry represents a cluster of homologous proteins identified in Leptospira interrogans. One member (Q8EZX6 from SWISSPROT) has been predicted to be a phenazine biosynthesis family protein.; PDB: 2JNQ_A 2JMZ_A.
Probab=38.54 E-value=23 Score=21.12 Aligned_cols=19 Identities=37% Similarity=0.515 Sum_probs=12.1
Q ss_pred ccCCCCCCCEEEEECCEEc
Q psy12207 37 VDGRLQVGDKLIAVRNSTV 55 (69)
Q Consensus 37 ~~grl~~gD~il~vng~~~ 55 (69)
++..|++||+|+..+|...
T Consensus 73 ~A~~L~~GD~L~~~~G~~~ 91 (130)
T PF07591_consen 73 EAEDLKVGDRLLTADGSWV 91 (130)
T ss_dssp EGGG--TTSEEEEE-SSEE
T ss_pred hHhhCCCCCEEEcCCCCEE
Confidence 3445999999999998753
No 85
>KOG3834|consensus
Probab=36.44 E-value=58 Score=23.91 Aligned_cols=34 Identities=12% Similarity=0.107 Sum_probs=26.6
Q ss_pred CCCcEEEEEeCCCChhhccCCCCCCCEEEEE-CCE
Q psy12207 20 GDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV-RNS 53 (69)
Q Consensus 20 ~~~~i~I~~v~~~g~a~~~grl~~gD~il~v-ng~ 53 (69)
-+.-+.|-+|.+.+||+++|.....|-|+-+ +..
T Consensus 107 ~~~vwHvl~V~p~SPaalAgl~~~~DYivG~~~~~ 141 (462)
T KOG3834|consen 107 VESVWHVLSVEPNSPAALAGLRPYTDYIVGIWDAV 141 (462)
T ss_pred hhheeeeeecCCCCHHHhcccccccceEecchhhh
Confidence 3446789999999999999933489999877 543
No 86
>PRK05731 thiamine monophosphate kinase; Provisional
Probab=34.48 E-value=94 Score=20.82 Aligned_cols=50 Identities=14% Similarity=0.048 Sum_probs=29.5
Q ss_pred CCcCceEEecCCCCCCCCCCCcEEEEEeCC-CChhhccCCCCCCCEEEEECC
Q psy12207 2 CIAPIYNIAGGIGNQHIPGDNGIYVTKIMD-GGAAQVDGRLQVGDKLIAVRN 52 (69)
Q Consensus 2 ~~~lG~~i~GG~~~~~~~~~~~i~I~~v~~-~g~a~~~grl~~gD~il~vng 52 (69)
|..+|+.+.||-..........+.+.-+.+ ..+..+.+ .++||.|+-...
T Consensus 110 ~~~~g~~ivGG~t~~~~~~~i~vt~iG~~~~~~~~~~~~-a~~Gd~i~ltg~ 160 (318)
T PRK05731 110 ADRYGAELIGGDTTRGPDLSISVTAIGDVPGGRALRRSG-AKPGDLVAVTGT 160 (318)
T ss_pred HHHhCCeEECcccCCCCCcEEEEEEEEEcCCCCcccccC-CCCCCEEEEECC
Confidence 567899999996543311111222233333 34566666 799999988654
No 87
>cd02192 PurM-like3 AIR synthase (PurM) related protein, subgroup 3 of unknown function. The family of PurM related proteins includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM synthase and Selenophosphate synthetase (SelD). They all contain two conserved domains and seem to dimerize. The N-terminal domain forms the dimer interface and is a putative ATP binding domain.
Probab=34.40 E-value=65 Score=21.49 Aligned_cols=48 Identities=17% Similarity=0.061 Sum_probs=27.8
Q ss_pred CCcCceEEecCCCCCCC-CCCCcEEEEEeCCCChhhccCCCCCCCEEEEE
Q psy12207 2 CIAPIYNIAGGIGNQHI-PGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50 (69)
Q Consensus 2 ~~~lG~~i~GG~~~~~~-~~~~~i~I~~v~~~g~a~~~grl~~gD~il~v 50 (69)
|+.+|+.+.||--.... .....+.+.-..+....-+.+ .++||.|+-.
T Consensus 112 ~~~~gi~ivGGdt~~~~~~~~i~vt~iG~~~~~~~~r~~-a~~GD~I~vt 160 (283)
T cd02192 112 AEKFGVPIVGGHTHPDSPYNALSVAILGRARKDLLISFG-AKPGDRLILA 160 (283)
T ss_pred HHHcCCcEecccCCCCCCCCeEEEEEEEEEcCCccccCC-CCCCCEEEEE
Confidence 66789999998754321 111223333333332222666 8999999876
No 88
>COG4273 Uncharacterized conserved protein [Function unknown]
Probab=32.17 E-value=29 Score=21.32 Aligned_cols=31 Identities=19% Similarity=0.338 Sum_probs=24.7
Q ss_pred EEEEeCCCChhhccCCCCCCCEEEEECCEEcC
Q psy12207 25 YVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVS 56 (69)
Q Consensus 25 ~I~~v~~~g~a~~~grl~~gD~il~vng~~~~ 56 (69)
-+..+..+.|+.... -+.|++|+.++|.++.
T Consensus 49 C~agvg~gv~~l~~~-arsgrrIlalDGCp~~ 79 (135)
T COG4273 49 CTAGVGAGVPALVDA-ARSGRRILALDGCPLR 79 (135)
T ss_pred eeecccCCcHHHHHH-hhcCCceEEecCChHH
Confidence 445577778888775 8899999999998764
No 89
>COG0309 HypE Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=31.91 E-value=83 Score=22.24 Aligned_cols=58 Identities=16% Similarity=0.118 Sum_probs=32.1
Q ss_pred CCcCceEEecCCCCCCCCCCCcEEEEE-----eCCCChhhccCCCCCCCEEEEECCEEcCCCcc
Q psy12207 2 CIAPIYNIAGGIGNQHIPGDNGIYVTK-----IMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT 60 (69)
Q Consensus 2 ~~~lG~~i~GG~~~~~~~~~~~i~I~~-----v~~~g~a~~~grl~~gD~il~vng~~~~~~~~ 60 (69)
|+.+|.+|.+|-..-......++++.- +.+...-.-.+ +|+||.|+..-+.-.+..+.
T Consensus 118 a~~~Gv~IvtGdTkV~~~~~~~~vi~tt~iG~~~~~~~v~~~~-~~~GD~vI~tg~~g~hga~i 180 (339)
T COG0309 118 AEEAGVSIVTGDTKVVPGGKDPIVINTTGIGIIDKEILVSPSG-ARPGDAVIVTGTIGIHGASI 180 (339)
T ss_pred HHHcCCeEEccCceeecCCCCCcEEEeeeEEeecCCcccccCC-CCCCCEEEEcCChhHHHHHH
Confidence 456788888885432211223566652 22222233344 99999998766554444433
No 90
>PF14250 AbrB-like: AbrB-like transcriptional regulator
Probab=31.64 E-value=95 Score=17.05 Aligned_cols=29 Identities=28% Similarity=0.494 Sum_probs=21.4
Q ss_pred CCCCCcEEEEEeCCCC-----hh--hccCCCCCCCEE
Q psy12207 18 IPGDNGIYVTKIMDGG-----AA--QVDGRLQVGDKL 47 (69)
Q Consensus 18 ~~~~~~i~I~~v~~~g-----~a--~~~grl~~gD~i 47 (69)
.-++.+-|..+|..+| .| .+-+ |++||++
T Consensus 24 ~~GR~~syr~~Vq~NGnLLIG~AYT~~m~-L~PGdEF 59 (71)
T PF14250_consen 24 RRGRKASYRVSVQGNGNLLIGSAYTKQMG-LKPGDEF 59 (71)
T ss_pred CCCcCceEEEEEecCCCEEEcHHHHHHhC-CCCCCEE
Confidence 3456688999999886 23 3456 9999997
No 91
>PRK03760 hypothetical protein; Provisional
Probab=30.73 E-value=41 Score=19.83 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=15.9
Q ss_pred cEEEEEeCCCChhhccCCCCCCCEEE
Q psy12207 23 GIYVTKIMDGGAAQVDGRLQVGDKLI 48 (69)
Q Consensus 23 ~i~I~~v~~~g~a~~~grl~~gD~il 48 (69)
.-||-.+-. |.+++.| +++||+|.
T Consensus 90 a~~VLEl~a-G~~~~~g-i~~Gd~v~ 113 (117)
T PRK03760 90 ARYIIEGPV-GKIRVLK-VEVGDEIE 113 (117)
T ss_pred ceEEEEeCC-ChHHHcC-CCCCCEEE
Confidence 345655544 5555666 99999983
No 92
>PRK02268 hypothetical protein; Provisional
Probab=30.49 E-value=61 Score=19.98 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=14.8
Q ss_pred EeCCCChhhccCCCCCCCEEEE
Q psy12207 28 KIMDGGAAQVDGRLQVGDKLIA 49 (69)
Q Consensus 28 ~v~~~g~a~~~grl~~gD~il~ 49 (69)
++..+-.|... |+++||.|+-
T Consensus 24 qv~hgK~apl~-RmkpGD~ivy 44 (141)
T PRK02268 24 QVCHGKAAPLR-RMKPGDWIIY 44 (141)
T ss_pred EeCCCccchhh-cCCCCCEEEE
Confidence 56555555555 5999999985
No 93
>COG0260 PepB Leucyl aminopeptidase [Amino acid transport and metabolism]
Probab=29.71 E-value=66 Score=23.73 Aligned_cols=31 Identities=16% Similarity=0.217 Sum_probs=22.7
Q ss_pred EEEEEeCCCChhhccCCCCCCCEEEEECCEEcC
Q psy12207 24 IYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVS 56 (69)
Q Consensus 24 i~I~~v~~~g~a~~~grl~~gD~il~vng~~~~ 56 (69)
+.|....++-|...+ .++||++.+-||+.++
T Consensus 300 ~~vl~~~ENm~~g~A--~rPGDVits~~GkTVE 330 (485)
T COG0260 300 VGVLPAVENMPSGNA--YRPGDVITSMNGKTVE 330 (485)
T ss_pred EEEEeeeccCCCCCC--CCCCCeEEecCCcEEE
Confidence 455555555555443 7899999999999986
No 94
>PF13403 Hint_2: Hint domain
Probab=28.31 E-value=49 Score=20.11 Aligned_cols=22 Identities=23% Similarity=0.502 Sum_probs=15.5
Q ss_pred CCChhhccCCCCCCCEEEEECCE
Q psy12207 31 DGGAAQVDGRLQVGDKLIAVRNS 53 (69)
Q Consensus 31 ~~g~a~~~grl~~gD~il~vng~ 53 (69)
+.|+..... |++||+++..++.
T Consensus 12 ~~G~~~Ve~-L~~GD~V~T~dgg 33 (147)
T PF13403_consen 12 PDGPRPVED-LRPGDRVLTRDGG 33 (147)
T ss_pred CCcCeEeec-cCCCCEEEecCCC
Confidence 345555555 9999999988654
No 95
>PRK05385 phosphoribosylaminoimidazole synthetase; Provisional
Probab=27.38 E-value=84 Score=21.30 Aligned_cols=49 Identities=18% Similarity=0.304 Sum_probs=28.4
Q ss_pred CCcCceEEecCCCCCCCC----CCCcE--EEEE-eCCCChhhccCCCCCCCEEEEEC
Q psy12207 2 CIAPIYNIAGGIGNQHIP----GDNGI--YVTK-IMDGGAAQVDGRLQVGDKLIAVR 51 (69)
Q Consensus 2 ~~~lG~~i~GG~~~~~~~----~~~~i--~I~~-v~~~g~a~~~grl~~gD~il~vn 51 (69)
|+.+|..+.||--..... ++.-+ .+.- +.+..+..+.+ .++||.|+-..
T Consensus 124 ~~~~g~~ivGGdt~~~~~~~~~~~~~i~~t~~G~~~~~~~~~r~~-a~~GD~I~~tg 179 (327)
T PRK05385 124 CEQAGCALIGGETAEMPGMYHEGDYDLAGFAVGVVEKDKIIDGSK-VKEGDVLIGLA 179 (327)
T ss_pred HHHcCCeEeCccceECCCcccCCCeeEEEEEEEEEecccccCcCC-CCCCCEEEEeC
Confidence 667899999997532211 11122 1222 23344555666 89999998543
No 96
>cd06919 Asp_decarbox Aspartate alpha-decarboxylase or L-aspartate 1-decarboxylase, a pyruvoyl group-dependent decarboxylase in beta-alanine production. Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalyzed by the enzyme L-aspartate decarboxylase (ADC), EC:4.1.1.11 which requires a pyruvoyl group for its activity. The pyruvoyl cofactor is covalently bound to the enzyme. The protein is synthesized as a proenzyme and cleaved via self-processing at Gly23-Ser24 to yield an alpha chain (C-terminal fragment) and beta chain (N-terminal fragment), and the pyruvoyl group. Beta-alanine is required for the biosynthesis of pantothenate, in which the enzyme plays a critical regulatory role. The active site of the tetrameric enzyme is located at the interface of two subunits, with a Lysine and a Histidine from the beta chain of one subunit forming the active site with residues from the alpha chain of the adjacent subunit. This alignment
Probab=27.38 E-value=51 Score=19.65 Aligned_cols=21 Identities=33% Similarity=0.281 Sum_probs=14.3
Q ss_pred CCCChhhccCCCCCCCEEEEECC
Q psy12207 30 MDGGAAQVDGRLQVGDKLIAVRN 52 (69)
Q Consensus 30 ~~~g~a~~~grl~~gD~il~vng 52 (69)
.-.|+|++ ..++||+|+=..-
T Consensus 69 ~lNGAAAr--~~~~GD~vII~sy 89 (111)
T cd06919 69 CLNGAAAR--LGQPGDRVIIMAY 89 (111)
T ss_pred EeCCHHHh--cCCCCCEEEEEEC
Confidence 34567766 4689999975543
No 97
>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [].; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.
Probab=26.56 E-value=30 Score=24.97 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=14.1
Q ss_pred cCCCCCCCEEEEECCEEcCCCcc
Q psy12207 38 DGRLQVGDKLIAVRNSTVSKGPT 60 (69)
Q Consensus 38 ~grl~~gD~il~vng~~~~~~~~ 60 (69)
-|-|++||.++.+.|.+-+.+..
T Consensus 90 fg~LrpGD~ll~~tG~PYDTL~~ 112 (403)
T PF06838_consen 90 FGVLRPGDELLSITGKPYDTLEE 112 (403)
T ss_dssp HHH--TT-EEEESSSS--CCHHH
T ss_pred HhcCCCCCeEEEcCCCchhhHHH
Confidence 45599999999999999876543
No 98
>cd02197 HypE HypE (Hydrogenase expression/formation protein). HypE is involved in Ni-Fe hydrogenase biosynthesis. HypE dehydrates its own carbamoyl moiety in an ATP-dependent process to yield the enzyme thiocyanate. The N-terminal domain of HypE is related to the ATP-binding domains of the AIR synthases, selenophosphate synthetase (SelD), and FGAM synthase and is thought to bind ATP.
Probab=26.29 E-value=1.2e+02 Score=20.08 Aligned_cols=50 Identities=20% Similarity=0.313 Sum_probs=28.4
Q ss_pred CCcCceEEecCCCCCCCCC-CCcEEE----EEeC-CCChhhccCCCCCCCEEEEECC
Q psy12207 2 CIAPIYNIAGGIGNQHIPG-DNGIYV----TKIM-DGGAAQVDGRLQVGDKLIAVRN 52 (69)
Q Consensus 2 ~~~lG~~i~GG~~~~~~~~-~~~i~I----~~v~-~~g~a~~~grl~~gD~il~vng 52 (69)
|..+|+.+.||--...... ...+++ .-.. +.....+.+ .++||.|+-...
T Consensus 106 ~~~~g~~ivGGdt~~~~~~~~~~~~i~~t~~G~~~~~~~~~r~~-a~~GD~i~vtG~ 161 (293)
T cd02197 106 AREAGVKIVTGDTKVVPKGKADGIFINTTGIGVIPRGVIISPSN-IRPGDKIIVSGT 161 (293)
T ss_pred HHHcCCEEEeceeEeccCCccCceEEEEEEEEEEcCCccccccC-CCCCCEEEEeCC
Confidence 6678999999975421110 011222 2233 334455566 899999987653
No 99
>PF08250 Sperm_act_pep: Sperm-activating peptides; InterPro: IPR013254 The sperm-activating peptides (SAPs) are isolated in egg-conditioned media (egg jelly) of sea urchins. SAPs have several effects on sea urchin spermatozoa: stimulate sperm respiration and motility through intracellular alkalinization, transient elevation of cAMP, cGMP and Ca2+ levels in sperm cells [, ].
Probab=25.49 E-value=28 Score=12.08 Aligned_cols=6 Identities=17% Similarity=0.634 Sum_probs=2.8
Q ss_pred ceEEec
Q psy12207 6 IYNIAG 11 (69)
Q Consensus 6 G~~i~G 11 (69)
||++.|
T Consensus 1 gf~l~G 6 (10)
T PF08250_consen 1 GFSLGG 6 (10)
T ss_pred Cccccc
Confidence 445444
No 100
>cd01433 Ribosomal_L16_L10e Ribosomal_L16_L10e: L16 is an essential protein in the large ribosomal subunit of bacteria, mitochondria, and chloroplasts. Large subunits that lack L16 are defective in peptidyl transferase activity, peptidyl-tRNA hydrolysis activity, association with the 30S subunit, binding of aminoacyl-tRNA and interaction with antibiotics. L16 is required for the function of elongation factor P (EF-P), a protein involved in peptide bond synthesis through the stimulation of peptidyl transferase activity by the ribosome. Mutations in L16 and the adjoining bases of 23S rRNA confer antibiotic resistance in bacteria, suggesting a role for L16 in the formation of the antibiotic binding site. The GTPase RbgA (YlqF) is essential for the assembly of the large subunit, and it is believed to regulate the incorporation of L16. L10e is the archaeal and eukaryotic cytosolic homolog of bacterial L16. L16 and L10e exhibit structural differences at the N-terminus.
Probab=25.29 E-value=41 Score=19.48 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=17.3
Q ss_pred ChhhccCCCCCCCEEEEECCEE
Q psy12207 33 GAAQVDGRLQVGDKLIAVRNST 54 (69)
Q Consensus 33 g~a~~~grl~~gD~il~vng~~ 54 (69)
.+.+..-++++|+.|+++.+.+
T Consensus 68 ~~~~~~a~v~~G~iifEi~~~~ 89 (112)
T cd01433 68 KPEGWVARVKPGQILFEVRGVP 89 (112)
T ss_pred CccEEEEEECCCCEEEEEeCcC
Confidence 4555566788999999999887
No 101
>PRK05449 aspartate alpha-decarboxylase; Provisional
Probab=25.19 E-value=59 Score=19.81 Aligned_cols=21 Identities=38% Similarity=0.362 Sum_probs=14.3
Q ss_pred CCCChhhccCCCCCCCEEEEECC
Q psy12207 30 MDGGAAQVDGRLQVGDKLIAVRN 52 (69)
Q Consensus 30 ~~~g~a~~~grl~~gD~il~vng 52 (69)
.-.|+|++ ..++||+|+=..-
T Consensus 70 ~lNGAAAr--~~~~GD~vII~ay 90 (126)
T PRK05449 70 CLNGAAAR--LVQVGDLVIIAAY 90 (126)
T ss_pred EeCCHHHh--cCCCCCEEEEEEC
Confidence 34567766 4689999975543
No 102
>cd02691 PurM-like2 AIR synthase (PurM) related protein, archaeal subgroup 2 of unknown function. The family of PurM related proteins includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM synthase and Selenophosphate synthetase (SelD). They all contain two conserved domains and seem to dimerize. The N-terminal domain forms the dimer interface and is a putative ATP binding domain.
Probab=24.77 E-value=77 Score=21.99 Aligned_cols=49 Identities=8% Similarity=0.032 Sum_probs=27.7
Q ss_pred CCcCceEEecCCCCCC---CCCCCcE----EEEEeCCCChhhccCCCCCCCEEEEEC
Q psy12207 2 CIAPIYNIAGGIGNQH---IPGDNGI----YVTKIMDGGAAQVDGRLQVGDKLIAVR 51 (69)
Q Consensus 2 ~~~lG~~i~GG~~~~~---~~~~~~i----~I~~v~~~g~a~~~grl~~gD~il~vn 51 (69)
|+..|..+.||--... ......+ .+.-..+..+..+.+ .++||.|+-..
T Consensus 115 ~~~~gv~lvGGdT~~~~~~~~~~~~l~~svT~iG~~~~~~~~r~g-A~pGD~I~vtg 170 (346)
T cd02691 115 SEATGVPLVAGSTLRIGGDMVLGDRLVGGVGAVGRSKSDPSRRKN-AEPGDLILMTE 170 (346)
T ss_pred HHHcCCeEEeeeeEEecCCcccCCceEEEEEEEEEeccccccccC-CCCCCEEEEEC
Confidence 5567889998864321 0001122 222233444555555 89999998765
No 103
>TIGR00223 panD L-aspartate-alpha-decarboxylase. Members of this family are aspartate 1-decarboxylase, the enzyme that makes beta-alanine and C02 from aspartate. Beta-alanine is then used to make the vitamin pantothenate, from which coenzyme A is made. Aspartate 1-decarboxylase is synthesized as a proenzyme, then cleaved to an alpha (C-terminal) and beta (N-terminal) subunit with a pyruvoyl group.
Probab=24.58 E-value=62 Score=19.72 Aligned_cols=21 Identities=33% Similarity=0.346 Sum_probs=14.6
Q ss_pred CCCChhhccCCCCCCCEEEEECC
Q psy12207 30 MDGGAAQVDGRLQVGDKLIAVRN 52 (69)
Q Consensus 30 ~~~g~a~~~grl~~gD~il~vng 52 (69)
.-.|+|++ ..++||+|+=+.-
T Consensus 70 ~lNGAAAr--l~~~GD~VII~sy 90 (126)
T TIGR00223 70 CVNGAAAR--CVSVGDIVIIASY 90 (126)
T ss_pred EeCCHHHh--cCCCCCEEEEEEC
Confidence 44567766 4689999975543
No 104
>COG0709 SelD Selenophosphate synthase [Amino acid transport and metabolism]
Probab=24.40 E-value=86 Score=22.23 Aligned_cols=47 Identities=26% Similarity=0.232 Sum_probs=36.0
Q ss_pred CcCceEEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEE
Q psy12207 3 IAPIYNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIA 49 (69)
Q Consensus 3 ~~lG~~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~ 49 (69)
+--|+.++||-.....+..-++.|+-+.+-+.-.++.+.+.|+.|+-
T Consensus 130 rea~i~lagGhsIdapEP~fGlav~G~~~~~k~~~n~~a~~G~~lil 176 (346)
T COG0709 130 REAGIALAGGHSIDAPEPIFGLAVTGIVPTGKVKRNSTAKAGCKLIL 176 (346)
T ss_pred HHhCccccCCcccCCCCcccceeeecccchhhhcccccccCCcEEEE
Confidence 33467788887665555556888888888888888888999999864
No 105
>PF08541 ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ; InterPro: IPR013747 This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 2.3.1.41 from EC, the enzyme responsible for initiating the chain of reactions of the fatty acid synthase in plants and bacteria. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008610 lipid biosynthetic process; PDB: 3IL3_A 1ZOW_C 3GWE_B 3GWA_B 1UB7_B 3LED_B 2EBD_A 1HNJ_A 2EFT_B 1HN9_B ....
Probab=24.32 E-value=67 Score=17.21 Aligned_cols=16 Identities=31% Similarity=0.684 Sum_probs=12.0
Q ss_pred hccCCCCCCCEEEEEC
Q psy12207 36 QVDGRLQVGDKLIAVR 51 (69)
Q Consensus 36 ~~~grl~~gD~il~vn 51 (69)
.+.+++++||+++-+.
T Consensus 61 ~~~g~~~~Gd~vl~~~ 76 (90)
T PF08541_consen 61 LEEGRIKPGDRVLLVG 76 (90)
T ss_dssp HHTTSSCTTEEEEEEE
T ss_pred HHcCCCCCCCEEEEEE
Confidence 3466799999998653
No 106
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=24.08 E-value=68 Score=17.80 Aligned_cols=15 Identities=27% Similarity=0.521 Sum_probs=12.1
Q ss_pred CCCCCCEEEEECCEE
Q psy12207 40 RLQVGDKLIAVRNST 54 (69)
Q Consensus 40 rl~~gD~il~vng~~ 54 (69)
.|++||++....|..
T Consensus 37 ~L~~Gd~VvT~gGi~ 51 (84)
T TIGR00739 37 SLKKGDKVLTIGGII 51 (84)
T ss_pred hCCCCCEEEECCCeE
Confidence 399999999877753
No 107
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=23.98 E-value=64 Score=18.78 Aligned_cols=15 Identities=20% Similarity=0.328 Sum_probs=12.3
Q ss_pred CCCCCCEEEEECCEE
Q psy12207 40 RLQVGDKLIAVRNST 54 (69)
Q Consensus 40 rl~~gD~il~vng~~ 54 (69)
.|++||+|+...|..
T Consensus 52 ~Lk~Gd~VvT~gGi~ 66 (106)
T PRK05585 52 SLAKGDEVVTNGGII 66 (106)
T ss_pred hcCCCCEEEECCCeE
Confidence 399999999887753
No 108
>PLN00022 electron transfer flavoprotein subunit alpha; Provisional
Probab=23.39 E-value=1.6e+02 Score=20.78 Aligned_cols=31 Identities=13% Similarity=0.414 Sum_probs=28.5
Q ss_pred CcEEEEEeCCCChhhccCCCCCCCEEEEECCE
Q psy12207 22 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNS 53 (69)
Q Consensus 22 ~~i~I~~v~~~g~a~~~grl~~gD~il~vng~ 53 (69)
+.+||.-=+.|..-|..| ++.-+.|++||.-
T Consensus 294 P~lYIA~GISGAiQH~~G-m~~s~~IVAIN~D 324 (356)
T PLN00022 294 PELYIAVGISGAIQHLAG-MKDSKVIVAINKD 324 (356)
T ss_pred CcEEEEEecchHHHHHhh-cccCCEEEEECCC
Confidence 479999999999999999 9999999999964
No 109
>PRK11916 electron transfer flavoprotein subunit YdiR; Provisional
Probab=23.35 E-value=1.4e+02 Score=20.59 Aligned_cols=33 Identities=15% Similarity=0.298 Sum_probs=29.2
Q ss_pred CCcEEEEEeCCCChhhccCCCCCCCEEEEECCEE
Q psy12207 21 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNST 54 (69)
Q Consensus 21 ~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~~ 54 (69)
.+.+||.-=+.|..-|..| ++.-+.|++||.-+
T Consensus 251 ~P~lYiA~GISGAiQH~aG-m~~s~~IVAIN~Dp 283 (312)
T PRK11916 251 KSDLYLTLGISGQIQHMVG-GNGAKVIVAINKDK 283 (312)
T ss_pred CccEEEEeccccHHHHHhh-cccCCEEEEECCCC
Confidence 3479999999999999999 99999999999643
No 110
>TIGR00878 purM phosphoribosylaminoimidazole synthetase. This enzyme is found as a homodimeric monofunctional protein in prokaryotes and as part of a larger, multifunctional protein, sometimes with two copies of this enzyme in tandem, in eukaryotes.
Probab=23.01 E-value=1.5e+02 Score=20.26 Aligned_cols=50 Identities=16% Similarity=0.254 Sum_probs=28.5
Q ss_pred CCcCceEEecCCCCCCC----CCCCcEEE--EEeCCC-ChhhccCCCCCCCEEEEECC
Q psy12207 2 CIAPIYNIAGGIGNQHI----PGDNGIYV--TKIMDG-GAAQVDGRLQVGDKLIAVRN 52 (69)
Q Consensus 2 ~~~lG~~i~GG~~~~~~----~~~~~i~I--~~v~~~-g~a~~~grl~~gD~il~vng 52 (69)
|..+|..+.||--.... ++...+.+ .-+.+. -+-.+.+ .++||.|+-...
T Consensus 124 ~~~~g~~ivGG~t~~~~~~~~~~~~~i~~t~iG~~~~~~~~~~~~-a~~GD~i~ltg~ 180 (332)
T TIGR00878 124 CKQAGCALVGGETAEMPGMYRGGHYDLAGTAVGVVEKDEIITGEK-VKPGDVLIGLGS 180 (332)
T ss_pred HHHcCCEEEceeeeECCCcccCCceEEEEEEEEEEcCccccCccC-CCCCCEEEEECC
Confidence 66789999999744221 11112222 233333 3444555 899999987754
No 111
>PRK03363 fixB putative electron transfer flavoprotein FixB; Provisional
Probab=22.59 E-value=1.6e+02 Score=20.44 Aligned_cols=32 Identities=13% Similarity=0.331 Sum_probs=28.9
Q ss_pred CCcEEEEEeCCCChhhccCCCCCCCEEEEECCE
Q psy12207 21 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNS 53 (69)
Q Consensus 21 ~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~ 53 (69)
.+.+||.-=+.|..-|..| ++--+.|++||.-
T Consensus 252 ~P~lYiA~GISGaiQH~~G-m~~s~~IVAIN~D 283 (313)
T PRK03363 252 KPELYLAVGISGQIQHMVG-ANASQTIFAINKD 283 (313)
T ss_pred CccEEEEEccccHHHHHhh-cccCCEEEEEcCC
Confidence 3479999999999999999 9999999999964
No 112
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=21.84 E-value=76 Score=18.81 Aligned_cols=25 Identities=36% Similarity=0.445 Sum_probs=17.8
Q ss_pred EEEEeCCCChhhccCCCCCCCEEEEE
Q psy12207 25 YVTKIMDGGAAQVDGRLQVGDKLIAV 50 (69)
Q Consensus 25 ~I~~v~~~g~a~~~grl~~gD~il~v 50 (69)
....+++.+.+.+- .|++||.+++.
T Consensus 41 ~~~~iI~~~~~~~~-~L~~GD~VLA~ 65 (124)
T PF15057_consen 41 PISDIIALSDAMRH-SLQVGDKVLAP 65 (124)
T ss_pred ChHHeEEccCcccC-cCCCCCEEEEe
Confidence 33446666777644 59999999986
No 113
>cd06061 PurM-like1 AIR synthase (PurM) related protein, subgroup 1 of unknown function. The family of PurM related proteins includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM synthase and Selenophosphate synthetase (SelD). They all contain two conserved domains and seem to dimerize. The N-terminal domain forms the dimer interface and is a putative ATP binding domain.
Probab=21.71 E-value=92 Score=20.52 Aligned_cols=49 Identities=12% Similarity=0.070 Sum_probs=28.5
Q ss_pred CCcCceEEecCCCCCCCC---CCCcEEEEEe-CCCChhhccCCCCCCCEEEEEC
Q psy12207 2 CIAPIYNIAGGIGNQHIP---GDNGIYVTKI-MDGGAAQVDGRLQVGDKLIAVR 51 (69)
Q Consensus 2 ~~~lG~~i~GG~~~~~~~---~~~~i~I~~v-~~~g~a~~~grl~~gD~il~vn 51 (69)
|..+|+.+.||--..... ....+.+.-+ .+..+..+.+ .++||.|+-..
T Consensus 107 ~~~~gi~ivGG~t~~~~~~~~~~i~vt~~G~~~~~~~~~~~~-a~~Gd~i~ltg 159 (298)
T cd06061 107 AKELGVSIVGGHTEVTPGVTRPIISVTAIGKGEKDKLVTPSG-AKPGDDIVMTK 159 (298)
T ss_pred HHHcCCeEEeeeeEEcCCCCccEEEEEEEEEEcccccccccC-CCCCCEEEEeC
Confidence 567899999997432211 0112223333 3334555665 89999998764
No 114
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=21.17 E-value=1.6e+02 Score=19.05 Aligned_cols=45 Identities=22% Similarity=0.223 Sum_probs=28.1
Q ss_pred EEecCCCCCCCCCCCcEEEEEeCCCChhhccCCCCCCCEEEEECCE
Q psy12207 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNS 53 (69)
Q Consensus 8 ~i~GG~~~~~~~~~~~i~I~~v~~~g~a~~~grl~~gD~il~vng~ 53 (69)
.+..|...+.+.. .+.-++-|..|+..+..+....||.+..-.+.
T Consensus 133 ~i~pG~~~p~H~H-~G~E~tlVLeG~f~de~g~y~~Gd~i~~p~~~ 177 (215)
T TIGR02451 133 YIEAGQSIPQHTH-KGFELTLVLHGAFSDETGVYGVGDFEEADGSV 177 (215)
T ss_pred EECCCCccCCCcC-CCcEEEEEEEEEEEcCCCccCCCeEEECCCCC
Confidence 3444554443332 35566777777777888888888888754443
No 115
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=20.92 E-value=1.2e+02 Score=15.14 Aligned_cols=29 Identities=14% Similarity=0.192 Sum_probs=22.6
Q ss_pred hhccCCCCCCCEEEEECCEEcCCCcccccc
Q psy12207 35 AQVDGRLQVGDKLIAVRNSTVSKGPTLGYC 64 (69)
Q Consensus 35 a~~~grl~~gD~il~vng~~~~~~~~~~~~ 64 (69)
+.+.+ +.+.++.+..+|..+.+-..|.++
T Consensus 26 ~~~~~-~~~~~~~L~~~G~~L~d~~tL~~~ 54 (69)
T PF00240_consen 26 AEETG-IPPEQQRLIYNGKELDDDKTLSDY 54 (69)
T ss_dssp HHHHT-STGGGEEEEETTEEESTTSBTGGG
T ss_pred ccccc-cccccceeeeeeecccCcCcHHHc
Confidence 34455 888899999999999887777665
No 116
>PF02261 Asp_decarbox: Aspartate decarboxylase; InterPro: IPR003190 Decarboxylation of aspartate is the major route of alanine production in bacteria, and is catalysed by the enzyme aspartate decarboxylase. The enzyme is translated as an inactive proenzyme of two chains, A and B. This family contains both chains of aspartate decarboxylase.; GO: 0004068 aspartate 1-decarboxylase activity, 0006523 alanine biosynthetic process; PDB: 1PYU_C 1AW8_A 1PYQ_B 3TM7_C 1PT1_A 1PQH_A 1PPY_B 1PT0_B 1PQF_A 1PQE_A ....
Probab=20.91 E-value=53 Score=19.70 Aligned_cols=18 Identities=44% Similarity=0.661 Sum_probs=10.6
Q ss_pred CChhhccCCCCCCCEEEEEC
Q psy12207 32 GGAAQVDGRLQVGDKLIAVR 51 (69)
Q Consensus 32 ~g~a~~~grl~~gD~il~vn 51 (69)
.|+|++ ..++||+|+=+.
T Consensus 72 NGaAAr--l~~~GD~vII~s 89 (116)
T PF02261_consen 72 NGAAAR--LVQVGDRVIIMS 89 (116)
T ss_dssp EGGGGG--CS-TT-EEEEEE
T ss_pred CCHHHh--ccCCCCEEEEEE
Confidence 367766 468999997443
No 117
>COG0853 PanD Aspartate 1-decarboxylase [Coenzyme metabolism]
Probab=20.86 E-value=67 Score=19.55 Aligned_cols=23 Identities=35% Similarity=0.374 Sum_probs=15.4
Q ss_pred CCCChhhccCCCCCCCEEEEECCEE
Q psy12207 30 MDGGAAQVDGRLQVGDKLIAVRNST 54 (69)
Q Consensus 30 ~~~g~a~~~grl~~gD~il~vng~~ 54 (69)
...|+|++ ..++||+++-..-..
T Consensus 69 ~lNGAAAr--l~~~GD~VII~sy~~ 91 (126)
T COG0853 69 CLNGAAAR--LVQVGDLVIIMSYAQ 91 (126)
T ss_pred EechHHHh--hCCCCCEEEEEEccc
Confidence 34567766 479999998655433
No 118
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=20.69 E-value=1.2e+02 Score=15.78 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=13.8
Q ss_pred eCCCChhhccCCCCCCCEEEEE
Q psy12207 29 IMDGGAAQVDGRLQVGDKLIAV 50 (69)
Q Consensus 29 v~~~g~a~~~grl~~gD~il~v 50 (69)
+..|-|...+-.|+.||+|+-|
T Consensus 33 I~NGF~~~~d~~L~e~D~v~~I 54 (57)
T PF14453_consen 33 ILNGFPTKEDIELKEGDEVFLI 54 (57)
T ss_pred EEcCcccCCccccCCCCEEEEE
Confidence 3445555566667777777655
No 119
>COG0197 RplP Ribosomal protein L16/L10E [Translation, ribosomal structure and biogenesis]
Probab=20.31 E-value=52 Score=20.48 Aligned_cols=25 Identities=16% Similarity=0.248 Sum_probs=18.9
Q ss_pred CChhhccCCCCCCCEEEEECCEEcC
Q psy12207 32 GGAAQVDGRLQVGDKLIAVRNSTVS 56 (69)
Q Consensus 32 ~g~a~~~grl~~gD~il~vng~~~~ 56 (69)
|.|-.-+.++++|..+++|.+.+-+
T Consensus 91 G~pegwaArVkpG~vlfei~g~~e~ 115 (146)
T COG0197 91 GKPEGWAARVKPGRVLFEIAGVPEE 115 (146)
T ss_pred CCccEEEEEecCCcEEEEEecCcHH
Confidence 4555556679999999999987643
No 120
>CHL00044 rpl16 ribosomal protein L16
Probab=20.03 E-value=58 Score=19.79 Aligned_cols=24 Identities=13% Similarity=0.102 Sum_probs=17.3
Q ss_pred CChhhccCCCCCCCEEEEECCEEc
Q psy12207 32 GGAAQVDGRLQVGDKLIAVRNSTV 55 (69)
Q Consensus 32 ~g~a~~~grl~~gD~il~vng~~~ 55 (69)
|.+-+-..++++|+.|+++.+.+-
T Consensus 88 G~~~~~va~V~~G~ilfEi~g~~~ 111 (135)
T CHL00044 88 GSPEYWVAVVKPGRILYEMGGVSE 111 (135)
T ss_pred CCccEEEEEECCCcEEEEEeCCCH
Confidence 344445557899999999998653
Done!