RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12207
(69 letters)
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain,
structural genomics, structural genom consortium, SGC,
phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 73.9 bits (182), Expect = 2e-19
Identities = 35/43 (81%), Positives = 40/43 (93%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+IAGG+GNQHIPGDN IYVTKI+DGGAAQ DGRLQVGD+L+ V
Sbjct: 40 SIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMV 82
>2awx_A Synapse associated protein 97; membrane protein, synaptic
signaling, trafficking protein; HET: HIS; 1.80A {Rattus
norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Length = 105
Score = 71.6 bits (176), Expect = 1e-18
Identities = 33/43 (76%), Positives = 40/43 (93%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+IAGG+GNQHIPGDN IYVTKI++GGAA DG+LQ+GDKL+AV
Sbjct: 19 SIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAV 61
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural
genomics, structural GEN consortium, SGC, structural
protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1
PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Length = 94
Score = 69.6 bits (171), Expect = 6e-18
Identities = 34/43 (79%), Positives = 41/43 (95%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+IAGGIGNQHIPGDN IY+TKI++GGAAQ DGRLQ+GD+L+AV
Sbjct: 19 SIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAV 61
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane,
mitochondria distribution, PDZ, membrane, scaffold,
mitochondrion, membrane protein; 1.35A {Homo sapiens}
PDB: 2jin_A
Length = 101
Score = 67.0 bits (164), Expect = 1e-16
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
NI GG Q++ D+GIYV++I + GAA +DGRLQ GDK+++V
Sbjct: 23 NIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSV 65
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated
to tight junctions, PATJ; NMR {Homo sapiens}
Length = 129
Score = 67.5 bits (165), Expect = 1e-16
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
I G +G H +GIYV ++ G AA +G +QV DK++AV
Sbjct: 32 RIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAV 74
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane
protein 25, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 120
Score = 66.3 bits (162), Expect = 2e-16
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
NI GG Q++ D+GIYV++I + GAA +DGRLQ GDK+++V
Sbjct: 33 NIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSV 75
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal
transduction, structural genom structural genomics
consortium, SGC, signaling protein; 1.85A {Homo
sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A
1iu0_A 1iu2_A
Length = 102
Score = 65.8 bits (161), Expect = 2e-16
Identities = 25/43 (58%), Positives = 33/43 (76%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+IAGGI N H+P D GI++TKI+ GGAA +DGRL V D ++ V
Sbjct: 20 SIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRV 62
>2o2t_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 2.70A
{Homo sapiens}
Length = 117
Score = 65.9 bits (161), Expect = 3e-16
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT 60
++ G G+ GI+V +I +G A DGRL+ D+++A+ + + T
Sbjct: 37 SVVGLRSENR--GELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTIT 87
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Length = 108
Score = 64.3 bits (157), Expect = 1e-15
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+I+G GIYV ++ G AA +DGR++ DK++ V
Sbjct: 30 SISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRV 72
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti
density, glutametergic receptors, carbohydrate
metabolism, cycle, cell division; HET: MES; 1.85A
{Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Length = 170
Score = 65.4 bits (159), Expect = 2e-15
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 8 NIAGGI-GNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+I G G GI+V + +GGAA DGR+QV D L+ V
Sbjct: 96 SIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEV 139
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.36.1.1
Length = 105
Score = 62.7 bits (153), Expect = 4e-15
Identities = 21/44 (47%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Query: 8 NIAGGIGNQ-HIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+IAGG G+ + GD GI+V++I +GGAA G LQVGD+++++
Sbjct: 23 SIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSI 66
>2fne_A Multiple PDZ domain protein; structural protein, structural
genomics, SGC, structural genomics consortium, unknown
function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 63.1 bits (154), Expect = 5e-15
Identities = 22/43 (51%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+I GG G+ H GD IYV + GAA DGRL+ GD++IAV
Sbjct: 41 SIVGGYGSPH--GDLPIYVKTVFAKGAASEDGRLKRGDQIIAV 81
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1,
HOST-virus interaction, structural genomics consortium,
synaptosome, tight junction; 1.35A {Homo sapiens}
Length = 97
Score = 62.3 bits (152), Expect = 5e-15
Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
IAG IG++ + +GI+V I A + DGR+Q+GD++IAV
Sbjct: 20 TIAGYIGDKKL-EPSGIFVKSITKSSAVEHDGRIQIGDQIIAV 61
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI,
structural genomics, alternative splicing, cell cycle,
cell division, cell junction; NMR {Homo sapiens}
Length = 121
Score = 62.0 bits (151), Expect = 1e-14
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+I + I G IYV I+ GAA DGRL+ GD+LI V
Sbjct: 46 SITSR--DVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEV 86
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 111
Score = 61.6 bits (150), Expect = 1e-14
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Query: 8 NIAGGI----GNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+I GG GN P D GI+++K+ GAA DGRL+VG +L+ V
Sbjct: 26 SIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEV 72
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission,
protein binding; NMR {Rattus norvegicus}
Length = 113
Score = 61.2 bits (149), Expect = 2e-14
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 8 NIAGGI-GNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+I G G GI+V + +GGAA DGR+QV D L+ V
Sbjct: 20 SIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEV 63
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR
{Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A
1vj6_A 1gm1_A 1ozi_A
Length = 96
Score = 60.7 bits (148), Expect = 2e-14
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
++ GG+ GIYV ++ GAA+ DGR+ GD+++AV
Sbjct: 21 SVTGGVNTSV--RHGGIYVKAVIPQGAAESDGRIHKGDRVLAV 61
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 60.8 bits (148), Expect = 3e-14
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 8 NIAGG-IGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+I G +G GI+V + +GGAAQ DGR+QV D+++ V
Sbjct: 25 SIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEV 68
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90,
GLUR6, cell juncti membrane, lipoprotein, membrane,
palmitate, phosphoprotein; 2.05A {Rattus norvegicus}
PDB: 3zrt_A 2ka9_A
Length = 196
Score = 62.5 bits (152), Expect = 4e-14
Identities = 33/48 (68%), Positives = 42/48 (87%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTV 55
+IAGG+GNQHIPGDN IYVTKI++GGAA DGRLQ+GDK++AV + +
Sbjct: 116 SIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGL 163
Score = 57.8 bits (140), Expect = 2e-12
Identities = 23/43 (53%), Positives = 30/43 (69%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+IAGG N HI D I++TKI+ GGAA DGRL+V D ++ V
Sbjct: 21 SIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFV 63
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural
genomics, structural genomics consortium, SGC,
metal-binding; 1.75A {Homo sapiens}
Length = 118
Score = 60.5 bits (147), Expect = 5e-14
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+AGG H D IYV + GG DGR++ GD L+ V
Sbjct: 41 TVAGGAS--HREWDLPIYVISVEPGGVISRDGRIKTGDILLNV 81
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural
genomics, alternative splicing, cell cycle, cell
division, cell junction, coiled coil; NMR {Mus
musculus} PDB: 2ogp_A
Length = 111
Score = 60.0 bits (146), Expect = 5e-14
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+I + I G IYV I+ GAA DGRL+ GD+LI V
Sbjct: 27 SITSR--DVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEV 67
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell
adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A*
1t2m_A 2ain_A
Length = 106
Score = 59.3 bits (144), Expect = 9e-14
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+I G GIYV ++ GGAA VDGRL GD+L++V
Sbjct: 26 SIVAAKGAGQ--DKLGIYVKSVVKGGAADVDGRLAAGDQLLSV 66
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural
genomics, PDZ domain, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A
Length = 127
Score = 59.8 bits (145), Expect = 9e-14
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
++ G + D GI++ I+ GGAA DGRL++ D+LIAV
Sbjct: 42 SLKGNKSRET-GTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAV 83
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.7A {Homo sapiens} PDB:
2iwp_A
Length = 120
Score = 59.7 bits (145), Expect = 9e-14
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+IAGG+G+ GD I++ + G A +L+VGD+++ +
Sbjct: 41 SIAGGVGSPL--GDVPIFIAMMHPTGVAAQTQKLRVGDRIVTI 81
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight
junction protein, protein associated to tight
junctions, PATJ, structural genomics; NMR {Homo
sapiens}
Length = 128
Score = 59.8 bits (145), Expect = 9e-14
Identities = 10/53 (18%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT 60
++ G I+V + G A D RL+ D+++A+ ++ + + +
Sbjct: 42 SVVALRSQNL--GKVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNIS 92
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 59.4 bits (144), Expect = 1e-13
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
I GG G+ G Y+ KI+ GG+A+ G+L G +++
Sbjct: 35 RIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEW 77
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor,
PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Length = 130
Score = 59.1 bits (143), Expect = 2e-13
Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
++ GG G+ H GD + + +I G A++ +Q GD+++ +
Sbjct: 45 SLEGGKGSLH--GDKPLTINRIFKGAASEQSETVQPGDEILQL 85
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated
to tight junctions, PATJ; NMR {Homo sapiens}
Length = 108
Score = 57.8 bits (140), Expect = 4e-13
Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+I + P + I + ++ G A+ G L GD+L++V
Sbjct: 31 SILDY-QDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSV 72
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA,
structural genomics, riken structural
genomics/proteomics initiative, unknown function; NMR
{Homo sapiens} SCOP: b.36.1.1
Length = 110
Score = 57.0 bits (138), Expect = 9e-13
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+ G+ G G+Y+ ++ G A DGRL +GD+++ V
Sbjct: 24 GLIDGMHTHL--GAPGLYIQTLLPGSPAAADGRLSLGDRILEV 64
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic
domain associated protein, structural genomics; NMR
{Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 56.6 bits (137), Expect = 1e-12
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 8 NIAGGIG---NQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
NI GG N GI+V+KI+D G A +G LQ+ D++I V
Sbjct: 24 NIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEV 69
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1;
endoplasmic reticulum, postsynaptic membrane, membrane,
MEMB protein; 1.5A {Homo sapiens}
Length = 97
Score = 56.5 bits (137), Expect = 1e-12
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
I GG + + +T + GG A +G ++ GD+L++V
Sbjct: 19 VIRGGAHDDR-NKSRPVVITSVRPGGPADREGTIKPGDRLLSV 60
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand,
cytoplasm, developmental protein, phosphoprotein, WNT
signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A
3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A*
1mc7_A
Length = 108
Score = 56.3 bits (136), Expect = 2e-12
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+I G + GD GIY+ IM GGA DGR++ GD L+ V
Sbjct: 22 SIVGQ---SNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQV 61
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein,
STXBP4 protein, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: b.36.1.1
Length = 109
Score = 56.3 bits (136), Expect = 2e-12
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
I GGI +Y+ +++ GG DGRL+ GD+L+++
Sbjct: 30 KILGGINRNE---GPLVYIHEVIPGGDCYKDGRLKPGDQLVSI 69
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural
proteomics in europe, spine, structural genomics,
hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 108
Score = 56.2 bits (136), Expect = 2e-12
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 8 NIAGGI---GNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
++ G GIYV ++ GAA+ DGR+ GD+++AV
Sbjct: 25 SVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAV 70
>2xkx_A Disks large homolog 4; structural protein, scaffold protein,
membrane associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 58.8 bits (141), Expect = 3e-12
Identities = 25/52 (48%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 9 IAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT 60
IAGG N HI D I++TKI+ GGAA DGRL+V D ++ V N + T
Sbjct: 76 IAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFV-NEVDVREVT 126
Score = 50.3 bits (119), Expect = 3e-09
Identities = 35/55 (63%), Positives = 44/55 (80%), Gaps = 1/55 (1%)
Query: 7 YNIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTL 61
++IAGG+GNQHIPGDN IYVTKI++GGAA DGRLQ+GDK++AV NS +
Sbjct: 169 FSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAV-NSVGLEDVMH 222
Score = 43.0 bits (100), Expect = 9e-07
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 6/48 (12%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTV 55
NI GG + GI+++ I+ GG A + G L+ GD++++V +
Sbjct: 323 NIVGGEDGE------GIFISFILAGGPADLSGELRKGDQILSVNGVDL 364
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high
affinity ligand, cell adhesio; 1.60A {Homo sapiens}
PDB: 2h2c_A 2h3m_A 2rrm_A
Length = 107
Score = 55.5 bits (134), Expect = 3e-12
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 8 NIAGGIGNQHI-PGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
I+GG N H G+ I ++ ++ GG A +G+LQ D++ V
Sbjct: 24 AISGGRDNPHFQSGETSIVISDVLKGGPA--EGQLQENDRVAMV 65
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 55.4 bits (134), Expect = 3e-12
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+ GG + + GD + V ++ G AQ GRL+VGD ++ +
Sbjct: 27 TLGGG---RDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHI 66
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 117
Score = 55.1 bits (133), Expect = 5e-12
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 8 NIAGGIGNQHI-PGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
++GG N H G+ I ++ ++ GG A DG LQ D+++ V
Sbjct: 31 AVSGGRDNPHFENGETSIVISDVLPGGPA--DGLLQENDRVVMV 72
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL
conjugation, leucine-rich repeat, alternative splicing,
cytoplasm, circletail, coiled coil; 1.30A {Homo
sapiens}
Length = 97
Score = 53.8 bits (130), Expect = 9e-12
Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 8 NIAGGIGNQH-IPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+IAGG G+ D GI+++++ + G A G ++VGDKL+ V
Sbjct: 19 SIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEV 61
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane,
HOST- interaction, structural genomics consortium,
synaptosome, T junction; 1.80A {Homo sapiens}
Length = 123
Score = 54.4 bits (131), Expect = 1e-11
Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 8 NIAGGIGNQHIPGDN----GIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+I GG G + GI++ +++ A +G L+ GD+++ V
Sbjct: 41 SIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEV 87
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker,
structural genomics, struc genomics consortium, SGC,
structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 53.5 bits (129), Expect = 2e-11
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 8 NIAGGIGNQHIP----GDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+I GG G GI++ +++ A +G L+ GD+++ V
Sbjct: 21 SIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEV 67
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 53.5 bits (129), Expect = 2e-11
Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 8 NIAGGIGNQH-IPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+IAGG G+ D GI+++++ + G A G ++VGDKL+ V
Sbjct: 31 SIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEV 73
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ
tandem, alternative splicing, cell junction, cytoplasm;
2.30A {Rattus norvegicus}
Length = 200
Score = 55.1 bits (133), Expect = 2e-11
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
I GG + + +T + GG A +G ++ GD+L++V
Sbjct: 122 VIRGGAHDDR-NKSRPVVITCVRPGGPADREGTIKPGDRLLSV 163
Score = 48.6 bits (116), Expect = 5e-09
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSK 57
++GGI D V+ + GG A +L VGD + AV ++K
Sbjct: 24 TVSGGIDK-----DGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAK 68
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated
to tight junctions, PATJ; NMR {Homo sapiens}
Length = 124
Score = 53.6 bits (129), Expect = 3e-11
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPT 60
++AG + I+V I G A DGR+++GD+L+ + N+ + G +
Sbjct: 41 SLAGNKDRSRM----SIFVVGINPEGPAAADGRMRIGDELLEI-NNQILYGRS 88
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated
to tight junctions, PATJ; NMR {Homo sapiens}
Length = 116
Score = 53.2 bits (128), Expect = 3e-11
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+I GG N I + ++ + GAA DGRL GD+++ V
Sbjct: 33 SIVGGKDTPL----NAIVIHEVYEEGAAARDGRLWAGDQILEV 71
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling
protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Length = 98
Score = 52.7 bits (127), Expect = 3e-11
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 8 NIAGGIGNQH-IPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
I G GI++ I+ A + GRL+VGD+++++
Sbjct: 22 CIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSL 65
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal
peptide complex, high affnity ligand, signaling
protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Length = 103
Score = 52.8 bits (127), Expect = 3e-11
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 8 NIAGGIG---NQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+I+GG+G N P D+GI+VT++ G A LQ GDK+I
Sbjct: 26 SISGGVGGRGNPFRPDDDGIFVTRVQPEGPA--SKLLQPGDKIIQA 69
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex,
erbin., signaling protein; 1.25A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1mfl_A
Length = 95
Score = 52.4 bits (126), Expect = 4e-11
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 8 NIAGGIG---NQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+I+GG+G N P D+GI+VT++ G A LQ GDK+I
Sbjct: 18 SISGGVGGRGNPFRPDDDGIFVTRVQPEGPA--SKLLQPGDKIIQA 61
>2opg_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 1.50A
{Homo sapiens}
Length = 98
Score = 52.3 bits (126), Expect = 4e-11
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+I GG I + ++ + GAA DGRL GD+++ V
Sbjct: 20 SIVGGSDTLLGA----IIIHEVYEEGAACKDGRLWAGDQILEV 58
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain,
RAB3-interacting molecule, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Length = 131
Score = 53.3 bits (128), Expect = 4e-11
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+ GG + G ++TK+ G A G L+ GD+++
Sbjct: 53 KVVGGKMTES--GRLCAFITKVKKGSLADTVGHLRPGDEVLEW 93
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide;
peptide binding protein; NMR {Drosophila melanogaster}
Length = 106
Score = 52.0 bits (125), Expect = 6e-11
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 18 IPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
P + G + ++ G ++D +LQ GD +
Sbjct: 21 SPNEIGCTIADLIQGQYPEIDSKLQRGDIITKF 53
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase
binding domain, signaling protein; HET: GNP; 2.10A {Mus
musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A
2lc7_A 1rzx_A
Length = 128
Score = 52.5 bits (126), Expect = 8e-11
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 8 NIAGGIGNQHIPG----DNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVS 56
I G + P GI++++++ GG AQ G L V D+++ V VS
Sbjct: 47 YIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVS 99
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein
complex, PDZ domain, peptide binding protein; 2.60A
{Drosophila melanogaster}
Length = 206
Score = 53.7 bits (129), Expect = 9e-11
Identities = 9/45 (20%), Positives = 19/45 (42%)
Query: 11 GGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTV 55
+G P + G + ++ G ++D +LQ GD + +
Sbjct: 125 KELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDAL 169
Score = 48.0 bits (114), Expect = 1e-08
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 9 IAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+ GG N G +T + G D RL++ D + +
Sbjct: 35 VCGGKNN---HVTTGCVITHVYPEGQVAADKRLKIFDHICDI 73
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1
interacting protein 1, activin receptor interacting
protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 51.6 bits (124), Expect = 9e-11
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+I GG + +YV ++ + G A +GR++VGD++I +
Sbjct: 27 SIRGGREYKM-----DLYVLRLAEDGPAIRNGRMRVGDQIIEI 64
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing
protein 1; transferase, STRU genomics, structural
genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A
{Homo sapiens}
Length = 112
Score = 52.0 bits (125), Expect = 9e-11
Identities = 9/43 (20%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
++ GG + +YV ++ + G A+ G++++GD+++ +
Sbjct: 40 SLRGGREY-----NMDLYVLRLAEDGPAERSGKMRIGDEILEI 77
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 124
Score = 51.4 bits (123), Expect = 2e-10
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+ + D GIY+++I A DGR++ GD++I +
Sbjct: 37 TVCYRTDD---EDDIGIYISEIDPNSIAAKDGRIREGDRIIQI 76
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated
to tight junctions, PATJ; NMR {Homo sapiens}
Length = 117
Score = 50.9 bits (122), Expect = 2e-10
Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 8 NIAGGIGNQHIP----GDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+I GG GI++ ++++ A L+ GDK++ V
Sbjct: 32 SIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEV 78
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Length = 263
Score = 52.8 bits (126), Expect = 2e-10
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+I GG N+ I ++KI G AA L VGD +++V
Sbjct: 94 SIKGGRENKM-----PILISKIFKGLAADQTEALFVGDAILSV 131
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing
protein 1; PDZ domain, ATP-binding, cell junction, cell
membrane; NMR {Homo sapiens} PDB: 2kpl_A
Length = 129
Score = 50.9 bits (122), Expect = 3e-10
Identities = 10/43 (23%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+ GG D + + ++ G A +DG+++ GD +++V
Sbjct: 34 TVVGGD-----EPDEFLQIKSLVLDGPAALDGKMETGDVIVSV 71
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated
to tight junctions, PATJ; NMR {Homo sapiens}
Length = 111
Score = 50.4 bits (121), Expect = 3e-10
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 7/43 (16%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
I GG +G+ V I+ GG A DGRLQ GD ++ +
Sbjct: 31 GIVGG-------KTSGVVVRTIVPGGLADRDGRLQTGDHILKI 66
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural
genomics, mouse cDNA, riken structural
genomics/proteomics initiative; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 126
Score = 50.6 bits (121), Expect = 3e-10
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 10 AGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
G+G I + ++ +++ GAA DG LQ GD LI+V
Sbjct: 37 NLGLGLVVIQNGPYLQISHLINKGAAASDGILQPGDVLISV 77
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics,
structural genomics consortium, SGC, signaling protein;
1.40A {Homo sapiens}
Length = 92
Score = 49.9 bits (120), Expect = 3e-10
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 6/43 (13%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+I G D G++V+ I+ GG A DGRL GD+++ V
Sbjct: 21 SIVGK------RNDTGVFVSDIVKGGIADADGRLMQGDQILMV 57
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 93
Score = 49.9 bits (120), Expect = 4e-10
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 5/43 (11%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
NI GG ++ IY+++++ GG A G L+ GD+L++V
Sbjct: 21 NIMGGKEQ-----NSPIYISRVIPGGVADRHGGLKRGDQLLSV 58
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain,
structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 123
Score = 50.1 bits (120), Expect = 5e-10
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
I GG D + V ++ G A DG+++ GD ++ +
Sbjct: 35 TIIGGD-----EPDEFLQVKSVIPDGPAAQDGKMETGDVIVYI 72
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3,
DLG3-human presynaptic protein, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.36.1.1
Length = 113
Score = 50.1 bits (120), Expect = 5e-10
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 6/43 (13%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
NI GG + GI+V+ I+ GG A + G L+ GD++++V
Sbjct: 31 NIVGGEDGE------GIFVSFILAGGPADLSGELRRGDRILSV 67
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc,
LNX2_human, zinc-finger, polymorphism, ring finger
protein 1; 1.3A {Homo sapiens}
Length = 95
Score = 49.6 bits (119), Expect = 6e-10
Identities = 10/43 (23%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+ + G+++ +++GG A DGRL D+++A+
Sbjct: 21 KLVRRTD------EPGVFILDLLEGGLAAQDGRLSSNDRVLAI 57
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor
(LCF), structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.2
Length = 119
Score = 49.8 bits (119), Expect = 6e-10
Identities = 10/43 (23%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
++AGG + + I V ++ G A +G +Q G++++++
Sbjct: 32 SLAGGADLE----NKVITVHRVFPNGLASQEGTIQKGNEVLSI 70
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS,
nitric oxide synthase, oxidoreductase; NMR {Rattus
norvegicus} SCOP: b.36.1.1
Length = 127
Score = 49.9 bits (119), Expect = 7e-10
Identities = 10/43 (23%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+ + + ++ ++ GGAA+ G +Q GD ++AV
Sbjct: 25 LVKERVSKP------PVIISDLIRGGAAEQSGLIQAGDIILAV 61
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer,
membrane protein-oxidoreductase CO; 1.90A {Mus
musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Length = 90
Score = 48.8 bits (117), Expect = 7e-10
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+I GG N+ I ++KI G AA L VGD +++V
Sbjct: 21 SIKGGRENKM-----PILISKIFKGLAADQTEALFVGDAILSV 58
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Length = 118
Score = 49.4 bits (118), Expect = 8e-10
Identities = 11/43 (25%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+ GG+ + + V+ + +GGAA+ G + GD+++A+
Sbjct: 33 ALEGGVDSP----VGKVVVSAVYEGGAAERHGGVVKGDEIMAI 71
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing
protein 1; Cys Ser mutant, S genomics consortium, SGC,
transferase; 2.00A {Homo sapiens}
Length = 90
Score = 48.8 bits (117), Expect = 9e-10
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
I GG IY+ I+ GAA DGRL+ GD+LI+V
Sbjct: 18 RILGGNEP-----GEPIYIGHIVPLGAADTDGRLRSGDELISV 55
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding;
1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Length = 97
Score = 48.9 bits (117), Expect = 9e-10
Identities = 10/43 (23%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
I+G + I ++ + GG A+ G + +GD+++A+
Sbjct: 21 TISGTEEP-----FDPIIISSLTKGGLAERTGAIHIGDRILAI 58
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem
repeats, scaffold protein, protein binding; NMR {Rattus
norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Length = 196
Score = 50.5 bits (121), Expect = 9e-10
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTV 55
I+ + + + ++ I G A G L++GDKL+A+ N +
Sbjct: 124 TISSPSSRKP---GDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRL 168
Score = 48.6 bits (116), Expect = 5e-09
Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 9 IAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+ G + ++ I A+ G LQ+GD+++A+
Sbjct: 24 LQGSVFATETLSS-PPLISYIEADSPAERCGVLQIGDRVMAI 64
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain,
structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 48.9 bits (117), Expect = 1e-09
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
I GG I + ++ G+A DGRL GD+L+ V
Sbjct: 25 RILGGDEP-----GQPILIGAVIAMGSADRDGRLHPGDELVYV 62
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding,
nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens}
PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Length = 139
Score = 49.6 bits (118), Expect = 1e-09
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 8/57 (14%)
Query: 8 NIAGGIGNQ-------HIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSK 57
+I GGI D GIYVT++ +GG A++ G LQ+GDK++ V ++
Sbjct: 43 SIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTM 98
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase,
protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Length = 125
Score = 49.4 bits (118), Expect = 1e-09
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+I GG +Y+ ++ D A +DG + GD++ V
Sbjct: 36 SIGGGA-----QYCPCLYIVQVFDNTPAALDGTVAAGDEITGV 73
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative
splicing, cell junction, cell membrane, lipoprotein,
membrane, palmitate, phosphoprotein; 1.35A {Homo
sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Length = 104
Score = 48.8 bits (117), Expect = 1e-09
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 6/43 (13%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
NI GG + GI+++ I+ GG A + G L+ GD++++V
Sbjct: 27 NIVGGEXGE------GIFISFILAGGPADLSGELRKGDQILSV 63
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein;
structural protein-hydrolase complex, peptide binding
protei; NMR {Homo sapiens}
Length = 112
Score = 49.0 bits (117), Expect = 1e-09
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+I GG + I +++I G A G L VGD ++AV
Sbjct: 44 SITGGKEH-----GVPILISEIHPGQPADRCGGLHVGDAILAV 81
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain,
scaffolding protein, membrane, sensory transduction,
vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A
2qku_A
Length = 96
Score = 48.8 bits (117), Expect = 1e-09
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 18 IPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
P + G + ++ G ++D +LQ GD +
Sbjct: 27 SPNEIGCTIADLIQGQYPEIDSKLQRGDIITKF 59
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing
isoform B; GOPC PDZ domain, structural protein; NMR
{Homo sapiens}
Length = 103
Score = 48.5 bits (116), Expect = 1e-09
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+I GG + I +++I G A G L VGD ++AV
Sbjct: 26 SITGGKEH-----GVPILISEIHPGQPADRCGGLHVGDAILAV 63
>2i04_A Membrane-associated guanylate kinase, WW and PDZ
domain-containing protein 1; PDZ, E6 binding, tumor
suppressor, peptide binding protein; 2.15A {Mus
musculus}
Length = 85
Score = 48.0 bits (115), Expect = 1e-09
Identities = 10/43 (23%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+ GG D + + ++ G A +DG+++ GD +++V
Sbjct: 16 TVVGGDEP-----DEFLQIKSLVLDGPAALDGKMETGDVIVSV 53
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain,
structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 114
Score = 48.6 bits (116), Expect = 2e-09
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 8 NIAGGIGNQHIPGDN--GIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
I + + +I+DG A +L+VGD+++AV
Sbjct: 27 VIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAV 71
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger,
oxidoreductase; 1.25A {Rattus norvegicus} SCOP:
b.36.1.1 PDB: 1qav_B
Length = 112
Score = 48.6 bits (116), Expect = 2e-09
Identities = 10/43 (23%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+ + + ++ ++ GGAA+ G +Q GD ++AV
Sbjct: 18 LVKERVSKP------PVIISDLIRGGAAEQSGLIQAGDIILAV 54
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex,
peptide binding protein; 1.54A {Rattus norvegicus}
SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Length = 119
Score = 48.2 bits (115), Expect = 3e-09
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 6/43 (13%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
NI GG + GI+++ I+ GG A + G L+ GD++++V
Sbjct: 30 NIVGGEDGE------GIFISFILAGGPADLSGELRKGDQILSV 66
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural
genomics, structura genomics consortium, SGC, signaling
protein; 1.12A {Homo sapiens} PDB: 2pku_A
Length = 114
Score = 47.4 bits (113), Expect = 5e-09
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+I GG +Y+ ++ D A +DG + GD++ V
Sbjct: 41 SIGGGA-----QYCPCLYIVQVFDNTPAALDGTVAAGDEITGV 78
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown
function; 1.80A {Homo sapiens} PDB: 3ch8_A
Length = 195
Score = 48.8 bits (115), Expect = 5e-09
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 8 NIAGGIG---NQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+I+GG+G N P D+GI+VT++ G A LQ GDK+I
Sbjct: 7 SISGGVGGRGNPFRPDDDGIFVTRVQPEGPA--SKLLQPGDKIIQA 50
>3e17_A Tight junction protein ZO-2; domain swapping, alternative
promoter usage, alternative splicing, cell junction,
cell membrane, disease mutation; 1.75A {Homo sapiens}
Length = 88
Score = 46.5 bits (111), Expect = 6e-09
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 18 IPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTL 61
+ + I+V ++ G A DG L GD ++ + N TV++ +L
Sbjct: 17 LRLGSQIFVKEMTRTGLATKDGNLHEGDIILKI-NGTVTENMSL 59
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 46.6 bits (111), Expect = 7e-09
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
I GG + + I GG+A G+L+VG ++ V
Sbjct: 22 AIEGGANTRQ----PLPRIVTIQRGGSAHNCGQLKVGHVILEV 60
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 46.3 bits (110), Expect = 2e-08
Identities = 6/43 (13%), Positives = 15/43 (34%), Gaps = 4/43 (9%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
++ + I + +I G L GD ++++
Sbjct: 32 SLTTTSLR----NKSVITIDRIKPASVVDRSGALHPGDHILSI 70
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction,
membrane, phosphorylati domain, protein binding; 1.70A
{Homo sapiens} PDB: 2jwe_A 2osg_A
Length = 81
Score = 44.6 bits (106), Expect = 3e-08
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 18 IPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTL 61
+ + I+V +I A DG +Q GD ++ + N TV++ +L
Sbjct: 17 LRLASHIFVKEISQDSLAARDGNIQEGDVVLKI-NGTVTENMSL 59
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L
homolog; PDZ domain, cellular signaling, structural
genomics; NMR {Mus musculus} SCOP: b.36.1.1
Length = 122
Score = 44.8 bits (106), Expect = 5e-08
Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+ G + ++ I A+ G LQ+GD+++A+
Sbjct: 32 QLQGSVFATETLSS-PPLISYIEADSPAERCGVLQIGDRVMAI 73
>2edp_A Fragment, shroom family member 4; APX/shroom family member,
KIAA1202 protein, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 100
Score = 43.9 bits (104), Expect = 9e-08
Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+ GG+ + + V+KI DGG A + +++ GD+L+ +
Sbjct: 26 TLKGGLEHCE-----PLTVSKIEDGGKAALSQKMRTGDELVNI 63
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled
coil, deafness, hearing, non-syndromic deafness,
polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A
Length = 192
Score = 44.6 bits (105), Expect = 1e-07
Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 6/43 (13%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
++ GG+ G++++ ++ GG A G LQVGD+++ +
Sbjct: 101 SVRGGLEF-----GCGLFISHLIKGGQADSVG-LQVGDEIVRI 137
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3;
neuron-specific X11L2 protein, neuronal
MUNC18-1-interacting protein 3, MINT-3; NMR {Homo
sapiens}
Length = 101
Score = 43.2 bits (102), Expect = 2e-07
Identities = 9/38 (23%), Positives = 18/38 (47%)
Query: 13 IGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+ + + ++ GG A+ G L +GD+L A+
Sbjct: 28 VESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAI 65
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell
junction, membrane, phosphoprot domain, tight junction,
transmembrane; 2.40A {Homo sapiens}
Length = 92
Score = 42.4 bits (100), Expect = 2e-07
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 18 IPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTL 61
+ + I+V +I A DG +Q GD ++ + N TV++ +L
Sbjct: 19 LRLASHIFVKEISQDSLAARDGNIQEGDVVLKI-NGTVTENMSL 61
>3gge_A PDZ domain-containing protein GIPC2; structural genomics,
structural genomics consort protein binding; 2.60A
{Homo sapiens}
Length = 95
Score = 42.0 bits (99), Expect = 4e-07
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 19 PGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
G ++ +I DGG + VGD + ++
Sbjct: 25 NGVGYAFIKRIKDGGVIDSVKTICVGDHIESI 56
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated
protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 96
Score = 41.6 bits (98), Expect = 6e-07
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 17 HIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVS 56
HI + V + GG+A G+L GD+++ + N
Sbjct: 26 HISESLPLTVVAVTAGGSA--HGKLFPGDQILQMNNEPAE 63
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1
protein, structural genomics, riken structural
genomics/proteomics initiative; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 113
Score = 41.7 bits (98), Expect = 7e-07
Identities = 9/31 (29%), Positives = 20/31 (64%)
Query: 20 GDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+ + +++I+ GGAA+ G L GD+++ +
Sbjct: 46 EMDSVIISRIVKGGAAEKSGLLHEGDEVLEI 76
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell
adhesion; 1.99A {Homo sapiens} PDB: 3shu_A
Length = 124
Score = 41.7 bits (98), Expect = 9e-07
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 8/43 (18%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+AGG D GI+V +++ A +G L+ GD+++ V
Sbjct: 44 RLAGG-------NDVGIFVAGVLEDSPAAKEG-LEEGDQILRV 78
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 101
Score = 41.2 bits (97), Expect = 1e-06
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 6/43 (13%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+I GG + GIYV+ + G A+ +G L+VGD+++ V
Sbjct: 26 SIRGGSEH-----GVGIYVSLVEPGSLAEKEG-LRVGDQILRV 62
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 100
Score = 40.4 bits (95), Expect = 2e-06
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 6/43 (13%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
++ GG + GI+V+K+ +G +A+ G L VGDK+ V
Sbjct: 27 SVRGGSEH-----GLGIFVSKVEEGSSAERAG-LCVGDKITEV 63
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune
enteropathy-related antigen AIE-75 ,antigen
NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2kbs_A
Length = 114
Score = 40.5 bits (95), Expect = 2e-06
Identities = 10/43 (23%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+I+ G GI+++ + G + G L++GD+++ V
Sbjct: 32 SISSGPIQ-----KPGIFISHVKPGSLSAEVG-LEIGDQIVEV 68
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two
alpha-helices, protein binding; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 91
Score = 39.6 bits (93), Expect = 3e-06
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
++A G+ + G+YV I G + G L+ D+L+ V
Sbjct: 24 SVADGLL------EKGVYVKNIRPAGPGDLGG-LKPYDRLLQV 59
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 104
Score = 39.7 bits (93), Expect = 4e-06
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 6/43 (13%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
NI GG +Q GI+++K++ A G LQ GD+++AV
Sbjct: 32 NIRGGKASQL-----GIFISKVIPDSDAHRAG-LQEGDQVLAV 68
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.36.1.1
Length = 117
Score = 39.8 bits (93), Expect = 4e-06
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 8/43 (18%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+I G GIYV+K+ G A G L+ GD+L+
Sbjct: 35 SIVSG-------EKGGIYVSKVTVGSIAHQAG-LEYGDQLLEF 69
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane
protein; NMR {Homo sapiens} PDB: 2ev8_A
Length = 97
Score = 39.3 bits (92), Expect = 5e-06
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 20 GDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
V +I+ GG G L VGD+++ +
Sbjct: 34 EKQSCTVARILHGGMIHRQGSLHVGDEILEI 64
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 128
Score = 39.4 bits (92), Expect = 7e-06
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
I GG GIY+T + G A+ G L+VGD+++ V
Sbjct: 37 TIRGGAEY-----GLGIYITGVDPGSEAEGSG-LKVGDQILEV 73
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding
site complex, protein binding; 1.43A {Homo sapiens}
PDB: 3nfl_A 2vph_A
Length = 107
Score = 39.0 bits (91), Expect = 7e-06
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 6/44 (13%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAA-QVDGRLQVGDKLIAV 50
N+ GG + V+++ G A RL GD+++ +
Sbjct: 34 NVKGGYDQ-----KMPVIVSRVAPGTPADLCVPRLNEGDQVVLI 72
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics
consortium, SGC, protein BIN; 1.30A {Homo sapiens}
Length = 93
Score = 38.5 bits (90), Expect = 1e-05
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 20 GDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
I V +IM GGAA G + VGD+L V
Sbjct: 26 QTGAIIVARIMRGGAADRSGLIHVGDELREV 56
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain,
ptpase, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 119
Score = 38.7 bits (90), Expect = 1e-05
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 6/44 (13%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAA-QVDGRLQVGDKLIAV 50
N+ GG + V+++ G A RL GD+++ +
Sbjct: 32 NVKGGYDQ-----KMPVIVSRVAPGTPADLCVPRLNEGDQVVLI 70
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM,
tight junction, cell adhesio; 2.50A {Homo sapiens} PDB:
3tsw_A 3lh5_A
Length = 391
Score = 39.4 bits (91), Expect = 2e-05
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 8/49 (16%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVS 56
+AGG D GI+V +++ A +G L+ GD+++ V N +
Sbjct: 24 RLAGG-------NDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFT 64
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 126
Score = 38.8 bits (90), Expect = 2e-05
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 11 GGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
GG + + I+V ++ +GG A G L GD++I V
Sbjct: 50 GGKQRNRLEPMDTIFVKQVKEGGPAFEAG-LCTGDRIIKV 88
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 39.5 bits (91), Expect = 2e-05
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 8/49 (16%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVS 56
+AGG D GI+V +++ A +G L+ GD+++ V N +
Sbjct: 16 RLAGG-------NDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFT 56
>2eaq_A LIM domain only protein 7; conserved hypothetical protein,
structural genomics, NPPSFA; 1.46A {Homo sapiens}
Length = 90
Score = 37.8 bits (88), Expect = 2e-05
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 11 GGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSK 57
G GI+V + G A+ +LQV D++IA+ N+ S
Sbjct: 17 LDFGFTIKWDIPGIFVASVEAGSPAE-FSQLQVDDEIIAINNTKFSY 62
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain,
scaffolding protein signaling protein; 1.56A {Homo
sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A
1obz_A 1w9o_A 1w9q_A 1ybo_A
Length = 166
Score = 38.7 bits (90), Expect = 2e-05
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 11 GGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
G IG + DNGI+V + A + G L+ GD+++ +
Sbjct: 16 GKIGLRLKSIDNGIFVQLVQANSPASLVG-LRFGDQVLQI 54
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding;
2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A
1u37_A 1u38_A 2yt8_A
Length = 388
Score = 39.2 bits (90), Expect = 2e-05
Identities = 8/38 (21%), Positives = 21/38 (55%)
Query: 13 IGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+ + + + +M+GG A G+L +GD+++++
Sbjct: 223 VESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSI 260
Score = 35.3 bits (80), Expect = 4e-04
Identities = 9/33 (27%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 23 GIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTV 55
+ +M GG A+ G ++VG ++I + +V
Sbjct: 316 NGIICSLMRGGIAERGG-VRVGHRIIEINGQSV 347
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs
large homolog 2, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 91
Score = 37.0 bits (86), Expect = 4e-05
Identities = 11/40 (27%), Positives = 16/40 (40%)
Query: 20 GDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGP 59
+ + +I+ GG G L VGD + V V P
Sbjct: 27 EGGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPVGSDP 66
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor
clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Length = 88
Score = 36.9 bits (86), Expect = 4e-05
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 20 GDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
N V +IM GG G L VGD++ +
Sbjct: 23 ELNHCIVARIMHGGMIHRQGTLHVGDEIREI 53
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling
protein; NMR {Homo sapiens}
Length = 83
Score = 36.8 bits (86), Expect = 4e-05
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 17 HIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+ G ++ +M G A G L+ GD+++AV
Sbjct: 18 TLSGQAPCVLSCVMRGSPADFVG-LRAGDQILAV 50
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A
{Homo sapiens}
Length = 96
Score = 36.9 bits (86), Expect = 5e-05
Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 14 GNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+ + G G ++ ++ G A+ G +Q GD+L+AV
Sbjct: 22 EEKGLDGRPGQFLWEVDPGLPAKKAG-MQAGDRLVAV 57
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation,
cell projection, disease mutation, membrane,
phosphoprotein, polymorphism; NMR {Homo sapiens}
Length = 216
Score = 37.8 bits (87), Expect = 5e-05
Identities = 7/49 (14%), Positives = 17/49 (34%), Gaps = 7/49 (14%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVS 56
N+ G ++ + A+ G L+ D+++ V +
Sbjct: 25 NLHSD------KSKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCME 66
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm,
phosphoprotein, transport protein, CAsp; 2.60A {Homo
sapiens} PDB: 2eej_A
Length = 91
Score = 36.5 bits (85), Expect = 7e-05
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 16 QHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSK 57
I G G ++ ++ GG A + G L+ D +I V V
Sbjct: 21 NAIRGLPGSFIKEVQKGGPADLAG-LEDEDVIIEVNGVNVLD 61
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium
channel 3 chimera; PDZ domain, PDZ binding, GIRK3
regulation, early endosomes; 1.68A {Rattus norvegicus}
PDB: 3qdo_A 3qgl_A
Length = 107
Score = 36.6 bits (85), Expect = 7e-05
Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 8/50 (16%)
Query: 8 NIAGGIGNQHIPGDN-------GIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
N+ G + +V+ ++ GGAA G ++ GD+++ V
Sbjct: 22 NVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAG-VRKGDRILEV 70
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 106
Score = 35.5 bits (82), Expect = 2e-04
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 12 GIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
G + + G G+Y+T I G A G + D LI V
Sbjct: 22 GFSLKTVQGKKGVYMTDITPQGVAMRAG-VLADDHLIEV 59
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3,
human, structural genomics, structural GE consortium,
SGC, signaling protein; 2.39A {Homo sapiens} SCOP:
b.36.1.1
Length = 91
Score = 35.0 bits (81), Expect = 2e-04
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 17 HIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSK 57
I D+ + V + GG A+ G LQ D ++ + V
Sbjct: 19 TICCDSPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEH 58
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo
sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A
2ocs_A
Length = 91
Score = 34.9 bits (81), Expect = 2e-04
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 20 GDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
G G Y+ + G A+ G L GD+L+ V
Sbjct: 25 GKLGQYIRLVEPGSPAEKAG-LLAGDRLVEV 54
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics,
structural genomics consort metal binding protein;
1.70A {Homo sapiens} PDB: 3pdv_A
Length = 87
Score = 34.9 bits (81), Expect = 2e-04
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
I GG I VTK+ + G A+ D L+ GD ++A+
Sbjct: 17 RITGGRDFHT-----PIMVTKVAERGKAK-DADLRPGDIIVAI 53
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing
protein 1; structural genomi consortium, SGC,
ATP-binding, cell junction; 1.60A {Homo sapiens}
Length = 88
Score = 34.9 bits (81), Expect = 2e-04
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 9/43 (20%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
IA PG G V +I+D L+ GD ++ V
Sbjct: 19 TIADS------PGGGGQRVKQIVDSPR---SRGLKEGDLIVEV 52
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain,
adaptor protein, SR-BI, signaling protein; 1.30A {Mus
musculus} PDB: 3r69_A*
Length = 95
Score = 34.9 bits (81), Expect = 3e-04
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 16 QHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+ P G + I G A+ G L+ D ++AV
Sbjct: 23 RAGPEQKGQIIKDIEPGSPAEAAG-LKNNDLVVAV 56
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding,
protein-binding, RHOB, nitration, cytoplasm, PDZ
domain, CAsp8; 1.82A {Homo sapiens}
Length = 109
Score = 34.8 bits (80), Expect = 3e-04
Identities = 7/33 (21%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 18 IPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+ G+ + V + +A V G + GD ++++
Sbjct: 40 LRGNAPVQVHFLDPYCSASVAG-AREGDYIVSI 71
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma
homolog, phosphorylation, signaling PR LIM domain, PDZ
domain; 1.5A {Homo sapiens}
Length = 88
Score = 34.2 bits (79), Expect = 4e-04
Identities = 8/49 (16%), Positives = 20/49 (40%), Gaps = 6/49 (12%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVS 56
+ GG + ++ + DGG A +++GD ++++
Sbjct: 18 RLQGGKDFNM-----PLTISSLKDGGKAA-QANVRIGDVVLSIDGINAQ 60
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, signaling protein; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 100
Score = 34.7 bits (80), Expect = 4e-04
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 18 IPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
I D+ + V + GG A+ G LQ D ++ +
Sbjct: 32 ICCDSPVRVQAVDSGGPAERAG-LQQLDTVLQL 63
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ
domain, arhgef11, KIAA0380, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A
Length = 93
Score = 34.2 bits (79), Expect = 4e-04
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 17 HIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+ GD + V + GGAA G ++ GD++I V
Sbjct: 24 TVSGDRIVLVQSVRPGGAAMKAG-VKEGDRIIKV 56
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 94
Score = 34.2 bits (79), Expect = 4e-04
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
I+GG I VTK+ + G A+ L+ GD ++A+
Sbjct: 21 RISGGRDFHT-----PIIVTKVTERGKAEAAD-LRPGDIIVAI 57
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural
genomics consortium, SGC; 1.11A {Homo sapiens}
Length = 89
Score = 33.8 bits (78), Expect = 6e-04
Identities = 9/43 (20%), Positives = 20/43 (46%), Gaps = 6/43 (13%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+ GG + ++++ GG A G + VGD ++++
Sbjct: 18 RLQGGKDFNV-----PLSISRLTPGGKAAQAG-VAVGDWVLSI 54
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation,
structural genomics, structural genomics consortium,
SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Length = 90
Score = 33.8 bits (78), Expect = 6e-04
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 19 PGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
G Y+ + G A G L+ D+LI V
Sbjct: 25 KSRPGQYIRSVDPGSPAARSG-LRAQDRLIEV 55
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ
domain, protein, acetylation, cell projection, disease
mutation, membrane; NMR {Homo sapiens}
Length = 128
Score = 34.1 bits (78), Expect = 8e-04
Identities = 6/36 (16%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 20 GDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTV 55
G ++ + A+ G L+ D+++ V +
Sbjct: 31 SKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCM 65
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 33.5 bits (77), Expect = 9e-04
Identities = 8/43 (18%), Positives = 20/43 (46%), Gaps = 6/43 (13%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+ GG + ++ + DGG A +++GD ++++
Sbjct: 20 RLQGGKDFNM-----PLTISSLKDGGKAS-QAHVRIGDVVLSI 56
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere,
structural protein; NMR {Homo sapiens} SCOP: b.36.1.1
PDB: 1wjl_A
Length = 85
Score = 33.0 bits (76), Expect = 0.001
Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 6/43 (13%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+ GG + +++I G A +L GD ++A+
Sbjct: 16 RLQGGKDFNM-----PLTISRITPGSKAA-QSQLSQGDLVVAI 52
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ
domain, cytoskeleton, actin binding, structural
genomics; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 33.1 bits (76), Expect = 0.001
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 6/49 (12%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVS 56
++GGI + +T+I G A L GD ++A+
Sbjct: 20 RLSGGIDFNQ-----PLVITRITPGSKAA-AANLCPGDVILAIDGFGTE 62
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ
domain, PDZ2, acetylation, cell projection, membrane,
polymorphism; NMR {Homo sapiens}
Length = 98
Score = 33.1 bits (76), Expect = 0.002
Identities = 6/32 (18%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 19 PGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
G ++ + A+ G L+ D+++ V
Sbjct: 30 KSKPGQFIRSVDPDSPAEASG-LRAQDRIVEV 60
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics,
structural genomics consort unknown function; HET: PG4;
1.50A {Homo sapiens} PDB: 2v1w_A*
Length = 91
Score = 32.7 bits (75), Expect = 0.002
Identities = 9/49 (18%), Positives = 19/49 (38%), Gaps = 6/49 (12%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVS 56
+ GG + + ++++ G A L +GD + A+ S
Sbjct: 18 RLVGGKDFEQ-----PLAISRVTPGSKAA-LANLCIGDVITAIDGENTS 60
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 32.2 bits (74), Expect = 0.003
Identities = 8/49 (16%), Positives = 18/49 (36%), Gaps = 6/49 (12%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVS 56
+ GG + ++++ G A + L GD + A+ +
Sbjct: 23 RLVGGRDFSA-----PLTISRVHAGSKAALAA-LCPGDLIQAINGESTE 65
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 102
Score = 32.3 bits (74), Expect = 0.003
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 16 QHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSK 57
+ P G + I G A+ G L+ D ++AV +V
Sbjct: 24 RAGPEQKGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEA 64
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70
kDa, Na/PI cotransporter C- terminal-associated
protein, NAPI-CAP1; NMR {Mus musculus}
Length = 114
Score = 32.4 bits (74), Expect = 0.003
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 20 GDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSK 57
+G + I +G A+ G L GD+++ + V K
Sbjct: 36 DTDGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDK 72
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI,
signaling protein; 1.80A {Mus musculus}
Length = 106
Score = 31.6 bits (72), Expect = 0.005
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 20 GDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSK 57
+G + I +G A+ G L GD+++ + V K
Sbjct: 24 DTDGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDK 60
>2ego_A General receptor for phosphoinositides 1- associated scaffold
protein; PDZ domain, ligand-free, protein binding;
1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Length = 96
Score = 31.2 bits (71), Expect = 0.006
Identities = 8/31 (25%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 20 GDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
+ +V ++ + AQ+ G L GD + +V
Sbjct: 35 VEMVTFVARVHESSPAQLAG-LTPGDTIASV 64
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain,
intracellular signaling cascade, signal transduction;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 111
Score = 31.3 bits (71), Expect = 0.007
Identities = 6/41 (14%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 17 HIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSK 57
+ G+ + V + +A + G + GD +++++
Sbjct: 31 TLRGNTPVQVHFLDPHCSASLAG-AKEGDYIVSIQGVDCKW 70
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding
protein; PDZ domain, cytoplasm, membrane, polymorphism,
protein binding; 2.70A {Homo sapiens}
Length = 104
Score = 31.3 bits (71), Expect = 0.007
Identities = 10/45 (22%), Positives = 14/45 (31%), Gaps = 3/45 (6%)
Query: 8 NIAGGIG--NQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
I + + KI + A G LQ GD L +
Sbjct: 32 EIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAG-LQAGDVLANI 75
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 31.5 bits (71), Expect = 0.007
Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 13 IGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVS 56
+ + G +YV + + G A G L+ GD+++ + N
Sbjct: 35 LSSVEEDGIRRLYVNSVKETGLASKKG-LKAGDEILEINNRAAD 77
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ,
cell junction, cell adhesion, signaling protein,
nucleotide exchange factor; 1.30A {Homo sapiens} PDB:
3kze_A
Length = 94
Score = 31.1 bits (70), Expect = 0.008
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 20 GDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVS 56
G +YV + + G A G L+ GD+++ + N
Sbjct: 33 GIRRLYVNSVKETGLASKKG-LKAGDEILEINNRAAD 68
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell
membrane, hydrolase, membrane, protease, serine
protease, transmembrane; NMR {Bacillus subtilis}
Length = 91
Score = 30.3 bits (69), Expect = 0.011
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 22 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTL 61
NGIY + +++ A G+++VGDK+I+ L
Sbjct: 1 NGIYASSVVENMPA--KGKIEVGDKIISADGKNYQSAEKL 38
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 1.70A {Listeria monocytogenes}
PDB: 2kjk_A 3i1e_A
Length = 100
Score = 30.4 bits (69), Expect = 0.014
Identities = 8/40 (20%), Positives = 14/40 (35%), Gaps = 2/40 (5%)
Query: 22 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTL 61
+G+YV + D A L GD + + +
Sbjct: 7 DGVYVMSVKDDVPA--ADVLHAGDLITEIDGNAFKSSQEF 44
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein
structure initiative; NMR
{Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Length = 125
Score = 30.2 bits (68), Expect = 0.018
Identities = 9/52 (17%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Query: 7 YNIAGGIGNQHIPGD--NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVS 56
++ + G N + G +G+ + ++ G A L G + ++ S
Sbjct: 8 HHHSSGRENLYFQGHQPDGVQIDSVVPGSPA--SKVLTPGLVIESINGMPTS 57
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil,
PDZ, guanine-nucleotide releasing factor,
phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Length = 132
Score = 30.3 bits (68), Expect = 0.020
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 23 GIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
Y+ + +GG A G L++GD LI V
Sbjct: 66 LQYLESVDEGGVAWRAG-LRMGDFLIEV 92
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3,
microtubule associated serine/threonine kinase 3, PDZ
domain, structural genomics; 1.20A {Homo sapiens} PDB:
2w7r_A 2kqf_A 2kyl_A 3ps4_A
Length = 99
Score = 30.1 bits (68), Expect = 0.021
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 23 GIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSK 57
V + DG AQ + L+ GD + + +V
Sbjct: 35 HHVVWSVEDGSPAQ-EAGLRAGDLITHINGESVLG 68
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain,
structural genomics, KIAA0705 protein; NMR {Homo
sapiens} SCOP: b.36.1.1
Length = 96
Score = 29.7 bits (67), Expect = 0.030
Identities = 10/49 (20%), Positives = 15/49 (30%), Gaps = 11/49 (22%)
Query: 8 NIAGGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVS 56
IA Q V +I+D L GD ++ + V
Sbjct: 26 TIADSPTGQR--------VKQILDIQGC---PGLCEGDLIVEINQQNVQ 63
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium; NMR {Geobacillus thermodenitrificans}
Length = 94
Score = 28.8 bits (65), Expect = 0.056
Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 22 NGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTL 61
G+YV ++ A GRL+ GD++ A+ ++ +
Sbjct: 5 KGVYVMSVLPNMPA--AGRLEAGDRIAAIDGQPINTSEQI 42
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus
norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A
3o5n_A*
Length = 109
Score = 29.0 bits (65), Expect = 0.058
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 23 GIYVTKIMDGGAAQVDGRLQVGDKLIAV 50
Y+ + +GG A G L++GD LI V
Sbjct: 46 LQYLESVDEGGVAWRAG-LRMGDFLIEV 72
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Length = 82
Score = 26.5 bits (59), Expect = 0.34
Identities = 5/25 (20%), Positives = 11/25 (44%), Gaps = 1/25 (4%)
Query: 26 VTKIMDGGAAQVDGRLQVGDKLIAV 50
+T I+ +A +G L + +
Sbjct: 27 ITSIVKDSSAARNG-LLTEHNICEI 50
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing
protein 3; structural genomics consortium, SGC, PDZ
domain, signaling P; 1.60A {Homo sapiens}
Length = 113
Score = 26.3 bits (58), Expect = 0.57
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
Query: 20 GDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVS 56
G V I+D +Q LQ GD + + + V
Sbjct: 32 SPTGQKVKMILD---SQWCQGLQKGDIIKEIYHQNVQ 65
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane
protein, PDZ domain, hydrolase, inner membrane,
membrane, metal-binding; HET: MLY MSE; 0.98A
{Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A
Length = 91
Score = 25.9 bits (57), Expect = 0.62
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 26 VTKIMDGGAAQVDGRLQVGDKLIAVRNSTVS 56
+ + AA G LQ GD+++ V ++
Sbjct: 8 LENVQPNSAASXAG-LQAGDRIVXVDGQPLT 37
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.4 bits (55), Expect = 1.8
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 19/45 (42%)
Query: 15 NQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGP 59
N H+P + + + V+G +N VS GP
Sbjct: 357 NSHLPAGKQVEI--------SLVNGA----------KNLVVS-GP 382
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR
{Streptococcus pneumoniae}
Length = 134
Score = 24.9 bits (55), Expect = 2.3
Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 21 DNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTL 61
+G+ V + A +G L+ D + V + ++ L
Sbjct: 56 TSGVIVRSVQSNMPA--NGHLEKYDVITKVDDKEIASSTDL 94
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB:
3nzi_A 3nwu_A 2ytw_A 2joa_A
Length = 332
Score = 24.5 bits (54), Expect = 2.7
Identities = 8/51 (15%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 11 GGIGNQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTL 61
+G Y+ +++ A+ G L+ D +I++ +V +
Sbjct: 243 KDRHRDFPDVISGAYIIEVIPDTPAEAGG-LKENDVIISINGQSVVSANDV 292
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation,
binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4
b.47.1.1
Length = 325
Score = 24.1 bits (53), Expect = 4.6
Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 15 NQHIPGDNGIYVTKIMDGGAAQVDGRLQVGDKLIAVRNSTVSKGPTL 61
+G+ + K++ G A G L+ GD ++A+ V +
Sbjct: 249 PSFPDVQHGVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQNAEDV 294
>3anu_A D-serine dehydratase; PLP-dependent fold-type III enzyme, PL
binding, zinc binding, lyase; HET: PLP; 1.90A {Gallus
gallus} PDB: 3anv_A* 3awn_A* 3awo_A*
Length = 376
Score = 23.6 bits (50), Expect = 8.1
Identities = 8/38 (21%), Positives = 11/38 (28%), Gaps = 7/38 (18%)
Query: 17 HIPGDNGIYVTKIMD-------GGAAQVDGRLQVGDKL 47
I G + + + G GR VG L
Sbjct: 304 AIDGHPELRLVGLTQEHGLLEHAGGQMDFGRFPVGSVL 341
>3tv9_A Putative peptide maturation protein; structural genomics, center
for structural genomics of infec diseases, csgid,
alpha-beta, cytosol; 2.50A {Shigella flexneri}
Length = 457
Score = 23.0 bits (50), Expect = 9.9
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 12/42 (28%)
Query: 10 AGGIGNQHI-PGD-----------NGIYVTKIMDGGAAQVDG 39
AGGI N I G+ VT++M G + + G
Sbjct: 355 AGGIHNWRIAGQGLSFEQMLKEMGTGLVVTELMGQGVSAITG 396
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.142 0.433
Gapped
Lambda K H
0.267 0.0735 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,057,016
Number of extensions: 50917
Number of successful extensions: 330
Number of sequences better than 10.0: 1
Number of HSP's gapped: 273
Number of HSP's successfully gapped: 178
Length of query: 69
Length of database: 6,701,793
Length adjustment: 39
Effective length of query: 30
Effective length of database: 5,612,874
Effective search space: 168386220
Effective search space used: 168386220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.4 bits)