Query psy12208
Match_columns 392
No_of_seqs 98 out of 118
Neff 4.3
Searched_HMMs 46136
Date Fri Aug 16 21:35:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12208.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12208hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0579|consensus 100.0 2.8E-71 6.1E-76 577.1 34.1 274 98-389 811-1084(1187)
2 KOG0579|consensus 100.0 1.2E-47 2.5E-52 400.8 37.2 265 8-284 851-1137(1187)
3 PF12474 PKK: Polo kinase kina 99.9 8.4E-23 1.8E-27 181.7 7.7 99 287-388 1-99 (142)
4 PF12474 PKK: Polo kinase kina 99.8 6.8E-20 1.5E-24 163.2 17.8 136 107-258 5-142 (142)
5 KOG0577|consensus 99.4 1.3E-08 2.8E-13 108.6 38.6 330 7-363 543-913 (948)
6 KOG0577|consensus 99.3 5.8E-09 1.3E-13 111.2 34.9 232 96-345 491-742 (948)
7 PF14988 DUF4515: Domain of un 17.2 9E+02 0.02 23.1 19.9 50 237-286 88-138 (206)
8 PF10444 Nbl1_Borealin_N: Nbl1 11.2 7.3E+02 0.016 18.9 5.4 43 165-214 11-53 (59)
9 PF01486 K-box: K-box region; 7.8 1.1E+03 0.023 19.5 5.4 49 3-55 43-91 (100)
10 PF05008 V-SNARE: Vesicle tran 5.9 1.3E+03 0.029 17.7 6.2 50 302-359 22-71 (79)
No 1
>KOG0579|consensus
Probab=100.00 E-value=2.8e-71 Score=577.12 Aligned_cols=274 Identities=40% Similarity=0.620 Sum_probs=264.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHhhhH
Q psy12208 98 RRLSDTHRENLALMERQFLQQKQHLMRAREAALWEMEERQIHERQQHAKKQLKDGFFLQRHQAEIQQEAELRLASKKIRS 177 (392)
Q Consensus 98 ~~~~~~hk~kia~~Er~~l~~k~~l~R~rE~~~welEer~l~EkhQL~KqQlKdq~~lQrekLE~~He~elR~~aKRIka 177 (392)
..+...+-..+.++-|.|.++..+++|+++-.|..||.++ ..+|+++|+.|+.++|+++||||.
T Consensus 811 qqL~~k~~~q~Eq~~rrFeqE~~~kkr~~d~EmenlErqQ----------------kq~iE~~Eq~h~~rlR~eakRir~ 874 (1187)
T KOG0579|consen 811 QQLQAKGIKQVEQQARRFEQEQTNKKRTSDLEMENLERQQ----------------KQEIEDTEQAHEHRLRNEAKRIRI 874 (1187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3455677778889999999999999999999999998876 448999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCChHHhhhHHHhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12208 178 EQERELKEFRESQKQEMRLLKQEVDLMPKDRRKSMFKDRKEKLETEHEEREKLFLESLNENHESSLRRLSDTHRENLALM 257 (392)
Q Consensus 178 EQEkEL~~F~e~LK~e~Ke~kqEv~~lPK~qRke~~r~rke~l~~~~~~rE~~Fl~~q~~~le~~L~~i~~~hk~kia~~ 257 (392)
||++||.+|++.||+++|++++|++.||+.+|+|+++.|+++....++-.|+.|+++|+++++.+|++|+.+||.+||+|
T Consensus 875 EQekd~~~Fqe~LK~~kKe~k~e~~~l~k~qrkdalkqr~eq~~~~~ql~ekdFv~kqqq~le~~lkrm~~~~k~ema~i 954 (1187)
T KOG0579|consen 875 EQEKDMRAFQERLKQEKKEFKQELTMLSKVQRKDALKQRKEQIEIEHQLKEKDFVMKQQQNLEAMLKRMAEKHKEEMASI 954 (1187)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHHHHHHhhHHHHHHhHHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q psy12208 258 ERQFLQQKQHLMRAREAALWEMEERQIHERQQHAKKQLKDGFFLQRHQMLIRHDKELEQLKRMNQRKIEELTKKQTIEKR 337 (392)
Q Consensus 258 Er~~L~qKq~LlRaREa~lWElEErhl~EkhqL~KqqlKd~~fLqRhQll~rHeKE~Eqm~r~n~r~~eel~~~q~~Ek~ 337 (392)
|++||++||+|+|||||+||||||+||+|||||+|+||||+|||||||||+||+||++||+|||+|++|+|+++|++||+
T Consensus 955 ErecLm~Kq~LlRarEaaiWElEe~qlqEkhqL~kqqlKDqYflqRhqlL~rHekE~eQmqrynQr~ie~Lk~rqtqera 1034 (1187)
T KOG0579|consen 955 ERECLMQKQNLLRAREAAIWELEEKQLQEKHQLHKQQLKDQYFLQRHQLLARHEKEMEQMQRYNQREIEDLKRRQTQERA 1034 (1187)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcchhhhhhHhHHHHHhHhhhcccCCCCCChhHHHHHhhhhhhhccccCCCC
Q psy12208 338 ALPKRIRSEMKIREQMFRQSMRISSSSTPDPEVEREKLKKVSVLGTIDVPSV 389 (392)
Q Consensus 338 rlPK~qR~E~KtR~~mfk~SlrI~~~~~~~~~~~rekiKqF~~qE~~~~~~~ 389 (392)
+||||+|||+||||+|||+||||++++|++++ ||+||+|.+||..|-++-
T Consensus 1035 rLPKiqRSE~KTRmaMfKkSLrIn~~~s~ae~--rekIkqF~~QEekRqk~e 1084 (1187)
T KOG0579|consen 1035 RLPKIQRSETKTRMAMFKKSLRINANMSNAEM--REKIKQFDEQEEKRQKAE 1084 (1187)
T ss_pred hcchhhhhhhHHHHHHHHHheeccCCCCcHHH--HHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999898888 999999999999987653
No 2
>KOG0579|consensus
Probab=100.00 E-value=1.2e-47 Score=400.77 Aligned_cols=265 Identities=34% Similarity=0.566 Sum_probs=253.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhCCHHhhhHHHHHhHHhHhHhhHHHHHHHHH
Q psy12208 8 ILLVSKAEIQQEAELRLASKKIRSEQERELKEFRESQKQEMRLLKQEVDLMPKDRRKSMFKDRKEKLETEHEEREKLFLE 87 (392)
Q Consensus 8 ~~~iEk~E~~q~~~lr~~akrik~eQeKel~~F~e~LK~~~Ke~K~ev~~~pk~~rk~~~k~rke~~~~~~~~~E~~Fl~ 87 (392)
-.+||++|+.|+++||+++||||.||||||.+|++.||+++|++|+||.+||+.+||+++++|++..+..++-.|++|+.
T Consensus 851 kq~iE~~Eq~h~~rlR~eakRir~EQekd~~~Fqe~LK~~kKe~k~e~~~l~k~qrkdalkqr~eq~~~~~ql~ekdFv~ 930 (1187)
T KOG0579|consen 851 KQEIEDTEQAHEHRLRNEAKRIRIEQEKDMRAFQERLKQEKKEFKQELTMLSKVQRKDALKQRKEQIEIEHQLKEKDFVM 930 (1187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy12208 88 SLNENHESSLRRLSDTHRENLALMERQFLQQKQHLMRAREAALWEMEERQIHERQQHAKKQLKDGFFLQRHQAEIQQEAE 167 (392)
Q Consensus 88 ~q~~~l~~~l~~~~~~hk~kia~~Er~~l~~k~~l~R~rE~~~welEer~l~EkhQL~KqQlKdq~~lQrekLE~~He~e 167 (392)
+|+++++.+|++|+.+||.++|++||+||.++|+|+|+|||+||+||++||+|+|||.|+||||+|||++++|..+|+++
T Consensus 931 kqqq~le~~lkrm~~~~k~ema~iErecLm~Kq~LlRarEaaiWElEe~qlqEkhqL~kqqlKDqYflqRhqlL~rHekE 1010 (1187)
T KOG0579|consen 931 KQQQNLEAMLKRMAEKHKEEMASIERECLMQKQNLLRAREAAIWELEEKQLQEKHQLHKQQLKDQYFLQRHQLLARHEKE 1010 (1187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHhhhHHHHHHHHHHHHHHHHHHHH-HHHHHhhCChHHhhhH---------------------HHhhHHhHHHhHH
Q psy12208 168 LRLASKKIRSEQERELKEFRESQKQEMRL-LKQEVDLMPKDRRKSM---------------------FKDRKEKLETEHE 225 (392)
Q Consensus 168 lR~~aKRIkaEQEkEL~~F~e~LK~e~Ke-~kqEv~~lPK~qRke~---------------------~r~rke~l~~~~~ 225 (392)
+.+ |.+|.+.+-.+++. +.+++.+|||.+|.++ ++.+...|+....
T Consensus 1011 ~eQ------------mqrynQr~ie~Lk~rqtqerarLPKiqRSE~KTRmaMfKkSLrIn~~~s~ae~rekIkqF~~QEe 1078 (1187)
T KOG0579|consen 1011 MEQ------------MQRYNQREIEDLKRRQTQERARLPKIQRSETKTRMAMFKKSLRINANMSNAEMREKIKQFDEQEE 1078 (1187)
T ss_pred HHH------------HHHHHHHHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHHheeccCCCCcHHHHHHHHHHHHHHH
Confidence 944 67777777777776 9999999999999874 5678899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhH
Q psy12208 226 EREKLFLESLNENHESSLRRLSDTHRENLALMERQFLQQKQHLMRAREAALWEMEERQI 284 (392)
Q Consensus 226 ~rE~~Fl~~q~~~le~~L~~i~~~hk~kia~~Er~~L~qKq~LlRaREa~lWElEErhl 284 (392)
.+-++-+..+.++++..|+.+...|-..|.++..-.+.++|.|+.+....+-+|++.|-
T Consensus 1079 kRqk~er~~q~qKhenqmrdl~~qce~ni~EL~qlQNEKchlLvEhEtqklKelde~h~ 1137 (1187)
T KOG0579|consen 1079 KRQKAEREDQDQKHENQMRDLKEQCEENIIELDQLQNEKCHLLVEHETQKLKELDEKHH 1137 (1187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999874
No 3
>PF12474 PKK: Polo kinase kinase ; InterPro: IPR022165 This domain family is found in eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00069 from PFAM. Polo-like kinase 1 (Plx1) is essential during mitosis for the activation of Cdc25C, for spindle assembly, and for cyclin B degradation. This family is Polo kinase kinase (PKK) which phosphorylates Polo kinase and Polo-like kinase to activate them. PKK is a serine/threonine kinase. ; GO: 0004674 protein serine/threonine kinase activity
Probab=99.87 E-value=8.4e-23 Score=181.75 Aligned_cols=99 Identities=42% Similarity=0.561 Sum_probs=94.2
Q ss_pred HHHHHHHhhHHHHHHhHHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHHhcchhhhhhHhHHHHHhHhhhcccCCCCC
Q psy12208 287 RQQHAKKQLKDGFFLQRHQMLIRHDKELEQLKRMNQRKIEELTKKQTIEKRALPKRIRSEMKIREQMFRQSMRISSSSTP 366 (392)
Q Consensus 287 khqL~KqqlKd~~fLqRhQll~rHeKE~Eqm~r~n~r~~eel~~~q~~Ek~rlPK~qR~E~KtR~~mfk~SlrI~~~~~~ 366 (392)
||++.+.|++|.||++||+|+++|++|+|+|.|||.+.+|+|...|+.+++.+||++|+|+++|++||++||+|++. ++
T Consensus 1 k~q~~keQ~~~rf~~e~~~l~k~~d~ElE~l~r~qk~~iE~le~~q~~e~r~~~KriR~Eq~~~l~~FkesLk~~~k-~~ 79 (142)
T PF12474_consen 1 KHQLQKEQLKDRFEQERTQLKKRYDKELEQLERQQKQQIEKLEQRQTQERRRLPKRIRAEQKKRLAMFKESLKIEKK-EL 79 (142)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-ch
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999 56
Q ss_pred ChhHHHHHhhhhhhhccccCCC
Q psy12208 367 DPEVEREKLKKVSVLGTIDVPS 388 (392)
Q Consensus 367 ~~~~~rekiKqF~~qE~~~~~~ 388 (392)
..+ +++|++|..+++.+.++
T Consensus 80 k~e--~ekl~~f~~qrk~~~k~ 99 (142)
T PF12474_consen 80 KQE--VEKLPQFKEQRKKRQKA 99 (142)
T ss_pred HHH--HHHhHhHHHHHHHHHHH
Confidence 665 99999999999887654
No 4
>PF12474 PKK: Polo kinase kinase ; InterPro: IPR022165 This domain family is found in eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00069 from PFAM. Polo-like kinase 1 (Plx1) is essential during mitosis for the activation of Cdc25C, for spindle assembly, and for cyclin B degradation. This family is Polo kinase kinase (PKK) which phosphorylates Polo kinase and Polo-like kinase to activate them. PKK is a serine/threonine kinase. ; GO: 0004674 protein serine/threonine kinase activity
Probab=99.85 E-value=6.8e-20 Score=163.17 Aligned_cols=136 Identities=37% Similarity=0.503 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHH
Q psy12208 107 NLALMERQFLQQKQHLMRAREAALWEMEERQIHERQQHAKKQLKDGFFLQRHQAEIQQEAELRLASKKIRSEQERELKEF 186 (392)
Q Consensus 107 kia~~Er~~l~~k~~l~R~rE~~~welEer~l~EkhQL~KqQlKdq~~lQrekLE~~He~elR~~aKRIkaEQEkEL~~F 186 (392)
-.-++.+.|.++.+++++.++..+.-|+..+ ..+++.|+..|+.+++.+|||||+||+++|++|
T Consensus 5 ~keQ~~~rf~~e~~~l~k~~d~ElE~l~r~q----------------k~~iE~le~~q~~e~r~~~KriR~Eq~~~l~~F 68 (142)
T PF12474_consen 5 QKEQLKDRFEQERTQLKKRYDKELEQLERQQ----------------KQQIEKLEQRQTQERRRLPKRIRAEQKKRLAMF 68 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456889999999999999999998888766 558999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhCC--hHHhhhHHHhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12208 187 RESQKQEMRLLKQEVDLMP--KDRRKSMFKDRKEKLETEHEEREKLFLESLNENHESSLRRLSDTHRENLALME 258 (392)
Q Consensus 187 ~e~LK~e~Ke~kqEv~~lP--K~qRke~~r~rke~l~~~~~~rE~~Fl~~q~~~le~~L~~i~~~hk~kia~~E 258 (392)
+++||+..++++++|+.+| +.+++++++.+++.++..+...+..|++.+..+++.+|.+|+..|+..|+++|
T Consensus 69 kesLk~~~k~~k~e~ekl~~f~~qrk~~~k~~~~~~~~k~~~qe~ef~~~~~~~~~~~L~qi~~e~r~~l~e~E 142 (142)
T PF12474_consen 69 KESLKIEKKELKQEVEKLPQFKEQRKKRQKAEKEELEQKHEEQEQEFLAKQEENLEEALKQIQNEKRHELAEHE 142 (142)
T ss_pred HHHHHhccCchHHHHHHhHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999 99999999999999999999999999999999999999999999999999976
No 5
>KOG0577|consensus
Probab=99.36 E-value=1.3e-08 Score=108.56 Aligned_cols=330 Identities=23% Similarity=0.281 Sum_probs=218.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh-------CCHHhhhHHHHHhHHhHhHhhH
Q psy12208 7 TILLVSKAEIQQEAELRLASKKIRSEQERELKEFRESQKQEMRLLKQEVDL-------MPKDRRKSMFKDRKEKLETEHE 79 (392)
Q Consensus 7 ~~~~iEk~E~~q~~~lr~~akrik~eQeKel~~F~e~LK~~~Ke~K~ev~~-------~pk~~rk~~~k~rke~~~~~~~ 79 (392)
-.+++||-..+.++.-+.+.+-|-++|.+||+.|.++.|.++|..|..+.. +||..+.+.+..-|++|..-+.
T Consensus 543 hqa~~ekeak~~~a~EkKfqq~i~~qqkk~l~~~~e~qkkeYK~~KE~~KeeL~e~~stPkrek~e~l~~qKe~Lq~~qa 622 (948)
T KOG0577|consen 543 HQAIGEKEAKAASAEEKKFQQHILGQQKKELKAYLEAQKKEYKLNKEQLKEELQENPSTPKREKAEWLLRQKENLQQCQA 622 (948)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999999999987765432 7999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHH
Q psy12208 80 EREKLFLESLNENHESSLRRLSDTHRENLALMERQFLQQKQHLMRAREAALWEMEERQIHERQQHAKKQLKDGFFLQRHQ 159 (392)
Q Consensus 80 ~~E~~Fl~~q~~~l~~~l~~~~~~hk~kia~~Er~~l~~k~~l~R~rE~~~welEer~l~EkhQL~KqQlKdq~~lQrek 159 (392)
++|..|+.+|.++++..|+++..+.-....++|.+.+.+--|.+.+.--.-..|.-+|-.-...|..+||.....+..+.
T Consensus 623 eeEa~ll~~qrqy~ele~r~ykRk~l~~rH~leqql~redlnkketQ~d~ehalLlrqhE~treLE~rql~~vq~~r~e~ 702 (948)
T KOG0577|consen 623 EEEAGLLRRQRQYLELECRRYKRKMLLARHELEQQLLREDLNKKETQKDLEHALLLRQHEATRELEYRQLNAVQRMRAEL 702 (948)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988887777666555555555554444455555555554444444
Q ss_pred HHHH----------------------HHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHH----HhhCChHHhhhHH
Q psy12208 160 AEIQ----------------------QEAELRLASKKIRSEQERELKEFRESQKQEMRLLKQE----VDLMPKDRRKSMF 213 (392)
Q Consensus 160 LE~~----------------------He~elR~~aKRIkaEQEkEL~~F~e~LK~e~Ke~kqE----v~~lPK~qRke~~ 213 (392)
+..+ |...+|+.+|-+++.-=.=-+.|++.-|-.-+..+.= +...||.+.++.+
T Consensus 703 ir~QHqtEl~nQ~eYnkRre~ELrrKHamq~RQQPksLK~~elqIrkqfq~tck~qtrqyk~~~~~~le~tpk~e~K~l~ 782 (948)
T KOG0577|consen 703 IRLQHQTELGNQLEYNKRREQELRRKHAMQVRQQPKSLKSKELQIRKQFQQTCKTQTRQYKAYRAQLLETTPKDEQKELL 782 (948)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhCchhhhHHHhhHHHHHHhhhhHHHHHHHHHHHhhhhcCChHHHHHHH
Confidence 4444 4445566666666654443456777777666553332 3557888888877
Q ss_pred HhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH----HHHHHHHHHHHHHHHHhhhhH-HHhhHH
Q psy12208 214 KDRKEKLETEHEEREKLFLESLNENHESSLRRLSDTHRENL---ALME----RQFLQQKQHLMRAREAALWEM-EERQIH 285 (392)
Q Consensus 214 r~rke~l~~~~~~rE~~Fl~~q~~~le~~L~~i~~~hk~ki---a~~E----r~~L~qKq~LlRaREa~lWEl-EErhl~ 285 (392)
+.-+++ .-.=++-+...++.++..+.+..--++ -++| +..|.+--.++-|=.+.+|-. |+-|-.
T Consensus 783 k~lk~e--------q~rklaiLaeqye~si~~m~~~q~lklde~qe~E~q~l~~ql~qEle~l~ayq~k~k~~~e~q~~r 854 (948)
T KOG0577|consen 783 KRLKEE--------QTRKLAILAEQYEQSINEMLQSQALKLDEAQEAECQVLREQLEQELELLNAYQSKIKMQAEEQHER 854 (948)
T ss_pred HHHHHH--------HHHHHHHHHHHhhhhHHHHhhccceechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766543 111233344445555555544322211 1222 234455555666666666653 333344
Q ss_pred HHHHHHHHhhHHHHHHhHHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHHhcchhhhhhHhHHHHHhHhhhcccCC
Q psy12208 286 ERQQHAKKQLKDGFFLQRHQMLIRHDKELEQLKRMNQRKIEELTKKQTIEKRALPKRIRSEMKIREQMFRQSMRISSS 363 (392)
Q Consensus 286 EkhqL~KqqlKd~~fLqRhQll~rHeKE~Eqm~r~n~r~~eel~~~q~~Ek~rlPK~qR~E~KtR~~mfk~SlrI~~~ 363 (392)
|...|. ..-.|.|--|=-+=+-|+.+|...-.-.+.-+.-+|+.| +.+.--+|||.-.+
T Consensus 855 e~~ele-----~rvslrra~lEqkieeE~~~~~~~Rserir~l~er~~~e--------------~e~fd~es~r~Gfs 913 (948)
T KOG0577|consen 855 ELRELE-----QRVSLRRALLEQKIEEELAQLQTERSERIRSLLERHARE--------------IEAFDNESLRLGFS 913 (948)
T ss_pred HHHHHH-----HHhhhhHHHHHHHHHHHHHHhcccchHHHHHHhhhhHHH--------------HhhhhhHHHHhccc
Confidence 443333 335666666655555555555544433344444444444 45555677776444
No 6
>KOG0577|consensus
Probab=99.35 E-value=5.8e-09 Score=111.20 Aligned_cols=232 Identities=22% Similarity=0.315 Sum_probs=177.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-----
Q psy12208 96 SLRRLSDTHRENLALMERQFLQQKQHLM--RAREAALWEMEERQIHERQQHAKKQLKDGFFLQRHQAEIQQEAEL----- 168 (392)
Q Consensus 96 ~l~~~~~~hk~kia~~Er~~l~~k~~l~--R~rE~~~welEer~l~EkhQL~KqQlKdq~~lQrekLE~~He~el----- 168 (392)
..++|-..|-..+-.+|-.|--..-... -.||- -++...|....+++...|.+..
T Consensus 491 gYKrmRrqHqkqL~~lE~r~k~e~eehr~~ldrEl------------------e~~~~~f~~e~ekl~~khqa~~ekeak 552 (948)
T KOG0577|consen 491 GYKRMRRQHQKQLLALEERLKGEREEHRARLDREL------------------ETLRANFSAELEKLARKHQAIGEKEAK 552 (948)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH------------------HHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3678888888888888888765443321 12211 2234455666666666665444
Q ss_pred ------HHHhHhhhHHHHHHHHHHHHHHHHHHHH----HHHHHh---hCChHHhhhHHHhhHHhHHHhHHHHHHHHHHHH
Q psy12208 169 ------RLASKKIRSEQERELKEFRESQKQEMRL----LKQEVD---LMPKDRRKSMFKDRKEKLETEHEEREKLFLESL 235 (392)
Q Consensus 169 ------R~~aKRIkaEQEkEL~~F~e~LK~e~Ke----~kqEv~---~lPK~qRke~~r~rke~l~~~~~~rE~~Fl~~q 235 (392)
+.+-+-|-+.|+++|+.|.++.|.+.|. +|.++. .+||..+.+.+..-+++++.-+.++|..|+.+|
T Consensus 553 ~~~a~EkKfqq~i~~qqkk~l~~~~e~qkkeYK~~KE~~KeeL~e~~stPkrek~e~l~~qKe~Lq~~qaeeEa~ll~~q 632 (948)
T KOG0577|consen 553 AASAEEKKFQQHILGQQKKELKAYLEAQKKEYKLNKEQLKEELQENPSTPKREKAEWLLRQKENLQQCQAEEEAGLLRRQ 632 (948)
T ss_pred hhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 5667789999999999999999998887 444443 479999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHHHHHHhhHHHHHHhHHHHHHhhHHHHH
Q psy12208 236 NENHESSLRRLSDTHRENLALMERQFLQQKQHLMRAREAALWEMEERQIHERQQHAKKQLKDGFFLQRHQMLIRHDKELE 315 (392)
Q Consensus 236 ~~~le~~L~~i~~~hk~kia~~Er~~L~qKq~LlRaREa~lWElEErhl~EkhqL~KqqlKd~~fLqRhQll~rHeKE~E 315 (392)
.++++..|+++....-....++|.+.+..--+..++.-..-..|--+|-.-...|-.+||....-|.-.++-..|+.|+.
T Consensus 633 rqy~ele~r~ykRk~l~~rH~leqql~redlnkketQ~d~ehalLlrqhE~treLE~rql~~vq~~r~e~ir~QHqtEl~ 712 (948)
T KOG0577|consen 633 RQYLELECRRYKRKMLLARHELEQQLLREDLNKKETQKDLEHALLLRQHEATRELEYRQLNAVQRMRAELIRLQHQTELG 712 (948)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999877654444444333333334444444455566666666666667777888999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHhcchhhhh
Q psy12208 316 QLKRMNQRKIEELTKKQTIEKRALPKRIRS 345 (392)
Q Consensus 316 qm~r~n~r~~eel~~~q~~Ek~rlPK~qR~ 345 (392)
....||+|.+.||.++++.+-++.||.+.+
T Consensus 713 nQ~eYnkRre~ELrrKHamq~RQQPksLK~ 742 (948)
T KOG0577|consen 713 NQLEYNKRREQELRRKHAMQVRQQPKSLKS 742 (948)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhCchhhhH
Confidence 999999999999999999999999999864
No 7
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=17.16 E-value=9e+02 Score=23.13 Aligned_cols=50 Identities=34% Similarity=0.492 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhHHHhhHHH
Q psy12208 237 ENHESSLRRLSDTHRENLALMERQFLQQKQHLMR-AREAALWEMEERQIHE 286 (392)
Q Consensus 237 ~~le~~L~~i~~~hk~kia~~Er~~L~qKq~LlR-aREa~lWElEErhl~E 286 (392)
..+...+.++...|...+..++..||..|.-|-+ +.+..+-.|-++--+|
T Consensus 88 ~~Le~e~~~~~~e~~~~l~~~~~qfl~EK~~LEke~~e~~i~~l~e~a~~e 138 (206)
T PF14988_consen 88 QTLEEELEKMRAEHAEKLQEAESQFLQEKARLEKEASELKILQLGERAHKE 138 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHhhHH
Confidence 4455667777778888888888888888888855 6566666666666555
No 8
>PF10444 Nbl1_Borealin_N: Nbl1 / Borealin N terminal; InterPro: IPR018851 This entry represents the N-terminal domain of borealin, and is also found in the N-terminal-Borealin-like (NBL; YHR199C-A) protein from Saccharomyces cerevisiae (Baker's yeast). NBL is a subunit of the conserved chromosomal passenger complex (CPC; Ipl1p-Sli15p-Bir1p-Nbl1p), which regulates mitotic chromosome segregation. It is not required for the kinase activity of the complex and it mediates the interaction of Sli15p and Bir1p [].; PDB: 2RAW_B 2RAX_Y 2QFA_B.
Probab=11.16 E-value=7.3e+02 Score=18.92 Aligned_cols=43 Identities=26% Similarity=0.427 Sum_probs=23.9
Q ss_pred HHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHhhhHHH
Q psy12208 165 EAELRLASKKIRSEQERELKEFRESQKQEMRLLKQEVDLMPKDRRKSMFK 214 (392)
Q Consensus 165 e~elR~~aKRIkaEQEkEL~~F~e~LK~e~Ke~kqEv~~lPK~qRke~~r 214 (392)
+.+...-++++++.-+.=+..|... +..++-++|+..|+=.++
T Consensus 11 d~Ev~~r~~~lr~~~~~~~~~~~~~-------~~~~l~riP~~vR~m~~~ 53 (59)
T PF10444_consen 11 DLEVEERIRRLRAQYENLLQSLRNR-------LEMELLRIPKAVRKMTMR 53 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHS-HHHHTSBHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHcCHHHHhCCHH
Confidence 3344444566666555544444333 455568999999974443
No 9
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=7.75 E-value=1.1e+03 Score=19.50 Aligned_cols=49 Identities=33% Similarity=0.369 Sum_probs=38.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12208 3 FETLTILLVSKAEIQQEAELRLASKKIRSEQERELKEFRESQKQEMRLLKQEV 55 (392)
Q Consensus 3 ~~~~~~~~iEk~E~~q~~~lr~~akrik~eQeKel~~F~e~LK~~~Ke~K~ev 55 (392)
++.|++..+..+|++-+ ...++||+-...=+..-.+.|+.....+..+.
T Consensus 43 L~~Ls~~eL~~LE~~Le----~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en 91 (100)
T PF01486_consen 43 LESLSLKELQQLEQQLE----SALKRVRSRKDQLLMEQIEELKKKERELEEEN 91 (100)
T ss_pred ccccchHHHHHHHHhhh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888877654 56678999999888888888888877777664
No 10
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=5.88 E-value=1.3e+03 Score=17.75 Aligned_cols=50 Identities=20% Similarity=0.472 Sum_probs=36.6
Q ss_pred hHHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHHhcchhhhhhHhHHHHHhHhhhc
Q psy12208 302 QRHQMLIRHDKELEQLKRMNQRKIEELTKKQTIEKRALPKRIRSEMKIREQMFRQSMR 359 (392)
Q Consensus 302 qRhQll~rHeKE~Eqm~r~n~r~~eel~~~q~~Ek~rlPK~qR~E~KtR~~mfk~Slr 359 (392)
+|+.++..=+..++.....=..| -.|-+.+|-..|+..++++.-||..|.
T Consensus 22 ~r~~~i~~~e~~l~ea~~~l~qM--------e~E~~~~p~s~r~~~~~kl~~yr~~l~ 71 (79)
T PF05008_consen 22 QRKSLIREIERDLDEAEELLKQM--------ELEVRSLPPSERNQYKSKLRSYRSELK 71 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--------HHHHCTS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 77788877777777765444444 455667899999999999999987663
Done!