Query psy12208
Match_columns 392
No_of_seqs 98 out of 118
Neff 4.3
Searched_HMMs 13730
Date Fri Aug 16 21:35:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12208.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/12208hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v54l_ f.23.6.1 (L:) Mitochon 7.3 52 0.0038 22.1 0.4 11 298-308 35-45 (46)
2 d1vcsa1 a.47.2.1 (A:8-96) Vesi 6.4 4.4E+02 0.032 18.8 6.0 49 302-358 28-76 (89)
3 d2ayua1 d.305.1.1 (A:70-370) N 3.5 1.1E+03 0.082 19.8 8.5 36 241-276 35-70 (301)
4 d1hmja_ d.78.1.1 (A:) RNA poly 2.8 2.4E+02 0.018 19.5 1.3 30 325-354 11-40 (68)
5 d1dzfa2 d.78.1.1 (A:144-215) E 2.8 1.6E+02 0.012 20.7 0.3 31 325-355 18-48 (72)
6 d2j7ja2 g.37.1.1 (A:29-57) Tra 2.7 2.2E+02 0.016 17.0 0.7 6 307-312 21-26 (29)
7 d1wxaa1 d.15.1.5 (A:8-110) Afa 2.3 2.6E+02 0.019 20.1 1.0 24 356-380 19-42 (103)
8 d2epra1 g.37.1.1 (A:350-384) P 2.3 1.6E+02 0.012 18.4 -0.3 12 295-306 15-26 (35)
9 d1vk5a_ a.220.1.1 (A:) Hypothe 2.2 3.4E+02 0.025 21.0 1.5 12 273-284 82-93 (121)
10 d1eika_ d.78.1.1 (A:) RNA poly 2.1 2.1E+02 0.015 20.3 0.1 30 325-354 22-51 (77)
No 1
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.30 E-value=52 Score=22.12 Aligned_cols=11 Identities=55% Similarity=0.963 Sum_probs=8.3
Q ss_pred HHHHhHHHHHH
Q psy12208 298 GFFLQRHQMLI 308 (392)
Q Consensus 298 ~~fLqRhQll~ 308 (392)
-|+.-|||||+
T Consensus 35 PF~ivRhqLlK 45 (46)
T d1v54l_ 35 PFFIVRHQLLK 45 (46)
T ss_dssp HHHHHHHHHTT
T ss_pred hHHHHHHHHhc
Confidence 47778888875
No 2
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.38 E-value=4.4e+02 Score=18.81 Aligned_cols=49 Identities=29% Similarity=0.493 Sum_probs=37.2
Q ss_pred hHHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHHhcchhhhhhHhHHHHHhHhhh
Q psy12208 302 QRHQMLIRHDKELEQLKRMNQRKIEELTKKQTIEKRALPKRIRSEMKIREQMFRQSM 358 (392)
Q Consensus 302 qRhQll~rHeKE~Eqm~r~n~r~~eel~~~q~~Ek~rlPK~qR~E~KtR~~mfk~Sl 358 (392)
+|.+++.-=++.++.. ++|...=-.|-+.+|-..|+-.-+|+--||-.|
T Consensus 28 erk~~l~~ie~~leEA--------~ell~qMelEvr~~p~s~R~~~~~klr~Yk~dl 76 (89)
T d1vcsa1 28 EKKQMVANVEKQLEEA--------RELLEQMDLEVREIPPQSRGMYSNRMRSYKQEM 76 (89)
T ss_dssp THHHHHHHHHHHHHHH--------HHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHH--------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 4666666656666554 456666678899999999999999999998654
No 3
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.49 E-value=1.1e+03 Score=19.85 Aligned_cols=36 Identities=19% Similarity=0.317 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12208 241 SSLRRLSDTHRENLALMERQFLQQKQHLMRAREAAL 276 (392)
Q Consensus 241 ~~L~~i~~~hk~kia~~Er~~L~qKq~LlRaREa~l 276 (392)
..+..+-..-..+|..+|+.|...-+-|--.|.+-|
T Consensus 35 ~e~~~le~~f~~e~~~LE~ky~~~~~ply~kR~~II 70 (301)
T d2ayua1 35 SELFEVEKEFQVEMFELENKFLQKYKPIWEQRSRII 70 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHH
Confidence 344455566678999999999999888887777776
No 4
>d1hmja_ d.78.1.1 (A:) RNA polymerase subunit RBP5 (RNA polymerase subunit H) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=2.82 E-value=2.4e+02 Score=19.51 Aligned_cols=30 Identities=30% Similarity=0.373 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHhcchhhhhhHhHHHHHh
Q psy12208 325 IEELTKKQTIEKRALPKRIRSEMKIREQMF 354 (392)
Q Consensus 325 ~eel~~~q~~Ek~rlPK~qR~E~KtR~~mf 354 (392)
.+++.++......+||+|.+++-=++-.=+
T Consensus 11 ~~~ll~~y~i~~~qLP~I~~~DPva~~~g~ 40 (68)
T d1hmja_ 11 VEEILKRYNIKIQQLPKIYEDDPVIQEIGA 40 (68)
T ss_pred HHHHHHHhCCCHHHCCcccccCHHHHHhCC
Confidence 345555555567899999999988775433
No 5
>d1dzfa2 d.78.1.1 (A:144-215) Eukaryotic RPB5 C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.77 E-value=1.6e+02 Score=20.75 Aligned_cols=31 Identities=19% Similarity=0.235 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHhcchhhhhhHhHHHHHhH
Q psy12208 325 IEELTKKQTIEKRALPKRIRSEMKIREQMFR 355 (392)
Q Consensus 325 ~eel~~~q~~Ek~rlPK~qR~E~KtR~~mfk 355 (392)
.+++..+....+.+||+|.+++.=+|--=|+
T Consensus 18 ~~~il~~y~i~~~qLP~I~~~DPva~~~g~~ 48 (72)
T d1dzfa2 18 KRELLKRYRLKESQLPRIQRADPVALYLGLK 48 (72)
T ss_dssp HHHHHHHTTCCGGGSCEECTTCHHHHHHTCC
T ss_pred HHHHHHHhCCCHhHCCeecccCHhhhhcCCC
Confidence 4455555555678999999999888766544
No 6
>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}
Probab=2.66 E-value=2.2e+02 Score=17.04 Aligned_cols=6 Identities=67% Similarity=1.027 Sum_probs=4.0
Q ss_pred HHhhHH
Q psy12208 307 LIRHDK 312 (392)
Q Consensus 307 l~rHeK 312 (392)
|+||+|
T Consensus 21 lkrhek 26 (29)
T d2j7ja2 21 LKRHEK 26 (29)
T ss_dssp HHHHHH
T ss_pred Hhhhhh
Confidence 667765
No 7
>d1wxaa1 d.15.1.5 (A:8-110) Afadin {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.30 E-value=2.6e+02 Score=20.06 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=19.4
Q ss_pred hhhcccCCCCCChhHHHHHhhhhhh
Q psy12208 356 QSMRISSSSTPDPEVEREKLKKVSV 380 (392)
Q Consensus 356 ~SlrI~~~~~~~~~~~rekiKqF~~ 380 (392)
+||+|++.. .+.+.+..-|.+|..
T Consensus 19 k~l~vs~~t-Ta~eVI~~~L~k~~l 42 (103)
T d1wxaa1 19 KTILLSTTD-TADFAVAESLEKYGL 42 (103)
T ss_dssp EEEECCSSC-CHHHHHHHHHHHHTC
T ss_pred EEEEECCCC-cHHHHHHHHHHHhCC
Confidence 489999885 577778999999974
No 8
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.27 E-value=1.6e+02 Score=18.36 Aligned_cols=12 Identities=33% Similarity=0.855 Sum_probs=9.3
Q ss_pred hHHHHHHhHHHH
Q psy12208 295 LKDGFFLQRHQM 306 (392)
Q Consensus 295 lKd~~fLqRhQl 306 (392)
+.|-|.|-||-|
T Consensus 15 frdvyhlnrhkl 26 (35)
T d2epra1 15 FRDVYHLNRHKL 26 (35)
T ss_dssp ESSHHHHHHHGG
T ss_pred HHHHHHHHhhhc
Confidence 468888888865
No 9
>d1vk5a_ a.220.1.1 (A:) Hypothetical protein At3g22680 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=2.16 E-value=3.4e+02 Score=21.02 Aligned_cols=12 Identities=42% Similarity=0.722 Sum_probs=9.1
Q ss_pred HHhhhhHHHhhH
Q psy12208 273 EAALWEMEERQI 284 (392)
Q Consensus 273 Ea~lWElEErhl 284 (392)
||.||-.||=|-
T Consensus 82 eatIW~vEe~HR 93 (121)
T d1vk5a_ 82 EATIWLVEEIHR 93 (121)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHh
Confidence 788888888663
No 10
>d1eika_ d.78.1.1 (A:) RNA polymerase subunit RBP5 (RNA polymerase subunit H) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=2.12 E-value=2.1e+02 Score=20.33 Aligned_cols=30 Identities=13% Similarity=0.088 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHhcchhhhhhHhHHHHHh
Q psy12208 325 IEELTKKQTIEKRALPKRIRSEMKIREQMF 354 (392)
Q Consensus 325 ~eel~~~q~~Ek~rlPK~qR~E~KtR~~mf 354 (392)
.+++..+....+.+||+|.+++.=+|--=|
T Consensus 22 ~~~~l~~~~i~~~qLP~I~~~DPva~~~g~ 51 (77)
T d1eika_ 22 AKRVLKELDAHPEQLPKIKTTDPVAKAIGA 51 (77)
T ss_dssp HHHHHHHTTCCTTTSCCCBTTSHHHHGGGC
T ss_pred HHHHHHHhcCCHHHCCeecccCHhhhhhCC
Confidence 345555555567899999999987764433
Done!