RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12208
(392 letters)
>gnl|CDD|204935 pfam12474, PKK, Polo kinase kinase. This domain family is found in
eukaryotes, and is approximately 140 amino acids in
length. The family is found in association with
pfam00069. Polo-like kinase 1 (Plx1) is essential during
mitosis for the activation of Cdc25C, for spindle
assembly, and for cyclin B degradation. This family is
Polo kinase kinase (PKK) which phosphorylates Polo
kinase and Polo-like kinase to activate them. PKK is a
serine/threonine kinase.
Length = 142
Score = 48.9 bits (117), Expect = 4e-07
Identities = 42/78 (53%), Positives = 58/78 (74%)
Query: 287 RQQHAKKQLKDGFFLQRHQMLIRHDKELEQLKRMNQRKIEELTKKQTIEKRALPKRIRSE 346
+ Q K+QLKD FFL+R Q+L RH+KELEQL+R +R IE+L ++QT E R LPKRIR+E
Sbjct: 1 KHQLQKEQLKDRFFLERTQLLKRHEKELEQLERQQKRTIEKLEQRQTQELRRLPKRIRAE 60
Query: 347 MKIREQMFRQSMRISSSS 364
K R +MF++S++I
Sbjct: 61 QKTRLKMFKESLKIEKKE 78
Score = 43.1 bits (102), Expect = 3e-05
Identities = 42/105 (40%), Positives = 63/105 (60%), Gaps = 2/105 (1%)
Query: 10 LVSKAEIQQEAELRLASKKIRSEQERELKEFRESQKQEMRLLKQEVDLMPKDR--RKSMF 67
+ K E +Q ELR K+IR+EQ+ LK F+ES K E + LKQEV+ +P+ + K
Sbjct: 38 TIEKLEQRQTQELRRLPKRIRAEQKTRLKMFKESLKIEKKELKQEVEKLPRFQEQEKKRM 97
Query: 68 KDRKEKLETEHEEREKLFLESLNENHESSLRRLSDTHRENLALME 112
K KE+ E +H+++E+ FL EN E +L++L + R LA E
Sbjct: 98 KAEKEEQEQKHQKQEREFLAKQEENLEEALQQLQNEKRHELAETE 142
Score = 42.7 bits (101), Expect = 5e-05
Identities = 41/102 (40%), Positives = 62/102 (60%), Gaps = 2/102 (1%)
Query: 159 QAEIQQEAELRLASKKIRSEQERELKEFRESQKQEMRLLKQEVDLMPKDR--RKSMFKDR 216
+ E +Q ELR K+IR+EQ+ LK F+ES K E + LKQEV+ +P+ + K K
Sbjct: 41 KLEQRQTQELRRLPKRIRAEQKTRLKMFKESLKIEKKELKQEVEKLPRFQEQEKKRMKAE 100
Query: 217 KEKLETEHEEREKLFLESLNENHESSLRRLSDTHRENLALME 258
KE+ E +H+++E+ FL EN E +L++L + R LA E
Sbjct: 101 KEEQEQKHQKQEREFLAKQEENLEEALQQLQNEKRHELAETE 142
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 42.1 bits (100), Expect = 3e-04
Identities = 51/163 (31%), Positives = 86/163 (52%), Gaps = 19/163 (11%)
Query: 135 ERQIHERQQHAKKQLKDGFFLQRHQAEIQQEAELRL--ASKKIRSEQERELKEFR-ESQK 191
E +I E ++ AK+ L++ ++ I++EA L K+R+E E+EL+E R E QK
Sbjct: 30 EAKIKEAEEEAKRILEEA---KKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQK 86
Query: 192 QEMRLLKQEVDLMPKDRRKSMFKDRKEKLETEHEEREKLFLESLNENHESSLRRLSDTHR 251
E RLL++E +L DR+ + + R+E+LE + +E E+ + L + E L +
Sbjct: 87 LEKRLLQKEENL---DRKLELLEKREEELEKKEKELEQK-QQELEKKEE----ELEELIE 138
Query: 252 ENLALMERQF-LQQKQHLMRAREAALWEMEERQIHERQQHAKK 293
E L +ER L ++ A+E L ++EE HE K+
Sbjct: 139 EQLQELERISGLTAEE----AKEILLEKVEEEARHEAAVLIKE 177
Score = 38.6 bits (91), Expect = 0.005
Identities = 45/137 (32%), Positives = 72/137 (52%), Gaps = 16/137 (11%)
Query: 15 EIQQEAELRL--ASKKIRSEQERELKEFR-ESQKQEMRLLKQEVDLMPKDRRKSMFKDRK 71
I++EA L K+R+E E+EL+E R E QK E RLL++E +L DR+ + + R+
Sbjct: 53 AIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENL---DRKLELLEKRE 109
Query: 72 EKLETEHEEREKLFLESLNENHESSLRRLSDTHRENLALMERQF-LQQKQHLMRAREAAL 130
E+LE + +E E+ + L + E L + E L +ER L ++ A+E L
Sbjct: 110 EELEKKEKELEQK-QQELEKKEE----ELEELIEEQLQELERISGLTAEE----AKEILL 160
Query: 131 WEMEERQIHERQQHAKK 147
++EE HE K+
Sbjct: 161 EKVEEEARHEAAVLIKE 177
Score = 30.9 bits (71), Expect = 1.3
Identities = 41/185 (22%), Positives = 77/185 (41%), Gaps = 33/185 (17%)
Query: 169 RLASKKIRSEQERELKEFRESQKQEMRLLKQEVDLMPKDRRKSMFKDRKEKLETEHEERE 228
++A KI E E E K E K+E +K+E L K+ + + E E ER
Sbjct: 27 KIAEAKI-KEAEEEAKRILEEAKKEAEAIKKEALLEAKEE----IHKLRNEFEKELRERR 81
Query: 229 KLFLESLNENHESSLRRLSDTHRENLALMERQFLQQKQHLMRAREAALWEMEERQIHERQ 288
E L + + L +K L+ RE L + +E+++ ++Q
Sbjct: 82 NEL-----------------QKLEKRLLQKEENLDRKLELLEKREEELEK-KEKELEQKQ 123
Query: 289 QHAKKQLKDGFFLQRHQMLIRHDKELEQLKRMN-----QRKIEELTKKQTIEKRALPKRI 343
Q +K+ ++ L+ ++ +ELE++ + + +E++ ++ E L K I
Sbjct: 124 QELEKKEEE---LEE--LIEEQLQELERISGLTAEEAKEILLEKVEEEARHEAAVLIKEI 178
Query: 344 RSEMK 348
E K
Sbjct: 179 EEEAK 183
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y. Members of this family are
RNase Y, an endoribonuclease. The member from Bacillus
subtilis, YmdA, has been shown to be involved in
turnover of yitJ riboswitch [Transcription, Degradation
of RNA].
Length = 514
Score = 39.9 bits (94), Expect = 0.002
Identities = 47/163 (28%), Positives = 83/163 (50%), Gaps = 19/163 (11%)
Query: 135 ERQIHERQQHAKKQLKDGFFLQRHQAEIQQEAEL--RLASKKIRSEQERELKEFR-ESQK 191
E+++ ++ AK+ +++ ++ +++EA L + K+R+E ERELKE R E Q+
Sbjct: 24 EKKLGSAEELAKRIIEEA---KKEAETLKKEALLEAKEEVHKLRAELERELKERRNELQR 80
Query: 192 QEMRLLKQEVDLMPKDRRKSMFKDRKEKLETEHEEREKLFLESLNENHESSLRRLSDTHR 251
E RLL++E L DR+ ++E LE + +E L + +N + L +
Sbjct: 81 LERRLLQREETL---DRKMESLDKKEENLEKKEKE-----LSNKEKNLDEKEEELEELIA 132
Query: 252 ENLALMER-QFLQQKQHLMRAREAALWEMEERQIHERQQHAKK 293
E +ER L Q++ A+E L E+EE HE + K+
Sbjct: 133 EQREELERISGLTQEE----AKEILLEEVEEEARHEAAKLIKE 171
Score = 38.0 bits (89), Expect = 0.008
Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 26/157 (16%)
Query: 15 EIQQEAEL--RLASKKIRSEQERELKEFR-ESQKQEMRLLKQEVDLMPKDRRKSMFKDRK 71
+++EA L + K+R+E ERELKE R E Q+ E RLL++E L DR+ ++
Sbjct: 47 TLKKEALLEAKEEVHKLRAELERELKERRNELQRLERRLLQREETL---DRKMESLDKKE 103
Query: 72 EKLETEHEEREKLFLESLNENHESSLRRLSDTHRENLALMER-QFLQQKQHLMRAREAAL 130
E LE + +E L + +N + L + E +ER L Q++ A+E L
Sbjct: 104 ENLEKKEKE-----LSNKEKNLDEKEEELEELIAEQREELERISGLTQEE----AKEILL 154
Query: 131 WEMEERQIHERQQHAKKQLKDGFFLQRHQAEIQQEAE 167
E+EE HE + K+ + E ++EA+
Sbjct: 155 EEVEEEARHEAAKLIKE----------IEEEAKEEAD 181
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 37.4 bits (87), Expect = 0.014
Identities = 60/324 (18%), Positives = 132/324 (40%), Gaps = 17/324 (5%)
Query: 12 SKAEIQQEAELRLASKKI--RSEQERELKEFRESQKQEMRLLKQEVDLMPKDRRKSMFKD 69
++ + Q+ EL+ +++ Q +L+E +S K E+R L+ ++ + + + +
Sbjct: 659 KRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQL 718
Query: 70 RKEKLETEHEEREKLFLESLNENHESSLRRLSDTHRENLALMERQFLQQKQHLMRAREAA 129
+ K E E E L+S E E L L + E +E + + + E A
Sbjct: 719 EELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEE-----LEEELESLEEA 773
Query: 130 LWEMEERQIHERQQHAKKQLKDGFFLQRHQAEIQQEAELRLASKKIRSEQERELKEFRES 189
L +++E ++ Q + + + + E L +++ S ++R + +E
Sbjct: 774 LAKLKEEIEELEEKRQALQEE---LEELEEELEEAERRLDALERELESLEQRRERLEQEI 830
Query: 190 QKQEMRLLKQEVDLMPKDRRKSMFKDRKEKLETEHEEREKLFLE-----SLNENHESSLR 244
++ E + + E L + + E+L+ E EE E E E + L
Sbjct: 831 EELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELE 890
Query: 245 RLSDTHRENLALMERQFLQQKQHLMRAREAALWEMEERQIHERQQHAKKQLKDGFFLQRH 304
LA ++ + + ++ L E ++ E ++ +++ +D +
Sbjct: 891 EELRELESELAELKEEIEKLRERLEELEAKLERL--EVELPELEEELEEEYEDTLETELE 948
Query: 305 QMLIRHDKELEQLKRMNQRKIEEL 328
+ + R ++E+E L +N R IEE
Sbjct: 949 REIERLEEEIEALGPVNLRAIEEY 972
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 36.6 bits (85), Expect = 0.026
Identities = 49/294 (16%), Positives = 108/294 (36%), Gaps = 16/294 (5%)
Query: 43 SQKQEMRLLKQEVDLMPKDRRKSMFKDRKEKLETEHEEREKLFLESLNENHESSLRRLSD 102
+++E+ L+++++ + +++ +LE E K E E +
Sbjct: 674 ERRREIEELEEKIEEL---------EEKIAELEKALAELRKELEELEEELEQLRKELEEL 724
Query: 103 THRENLALMERQFLQQKQHLMRAREAALWEMEERQIHERQQHAKKQLKDGFFLQRHQAEI 162
+ + + + L+ + + R A L + E ++ ++ + L +AEI
Sbjct: 725 SRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEI 784
Query: 163 QQEAELRLASKKIRSEQERELKEFR-ESQKQEMRLLKQEVDLMPKDRRKSMFKDRKEKLE 221
++ K+ L E R E L +RR + + R E LE
Sbjct: 785 EELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLE 844
Query: 222 TEHEEREKLFLESLNENHESSLRRLSDTHRENLALMERQFLQQKQHLMRAREAALWEMEE 281
+ EE + +ESL E L L + L + + ++ L R EE
Sbjct: 845 EQIEELSED-IESLAAEIEE-LEELIEELESELEALLNERASLEEALALLRSELEELSEE 902
Query: 282 RQIHERQQHAKKQLKDGFFLQRHQMLIRHDKELEQLKRMNQRKIEELTKKQTIE 335
+ E ++ ++ + + + L + + LE L+ E L+++ ++
Sbjct: 903 LRELESKRSELRRELE----ELREKLAQLELRLEGLEVRIDNLQERLSEEYSLT 952
Score = 32.7 bits (75), Expect = 0.38
Identities = 50/235 (21%), Positives = 95/235 (40%), Gaps = 17/235 (7%)
Query: 12 SKAEIQQEAELRLASKKIRSEQERELKEFRESQKQEMRLLKQEVDLMPKDRRKSMFKDRK 71
+ E Q+ LA++ S E++ + RE R L++ + + K
Sbjct: 281 EEIEELQKELYALANEI--SRLEQQKQILRERLANLERQLEELEAQLEELESK------L 332
Query: 72 EKLETEHEEREKLFLESLNENHESSLRRLSDTHRENLALMERQFLQQKQHLMRAREAALW 131
++L E E E+ LE L E ES L + E L R ++Q + A
Sbjct: 333 DELAEELAELEEK-LEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQL 391
Query: 132 EMEERQIHERQQHAKKQLKDGFFLQRHQAEIQQEAE-----LRLASKKIRSEQERELKEF 186
E++ ++ + + +L+ L+ + +QQE E L A K + EL+E
Sbjct: 392 ELQIASLNNEIERLEARLER---LEDRRERLQQEIEELLKKLEEAELKELQAELEELEEE 448
Query: 187 RESQKQEMRLLKQEVDLMPKDRRKSMFKDRKEKLETEHEEREKLFLESLNENHES 241
E ++E+ L++ ++ + ++ ++ + E + LE L EN E
Sbjct: 449 LEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEG 503
Score = 32.3 bits (74), Expect = 0.53
Identities = 40/181 (22%), Positives = 79/181 (43%), Gaps = 6/181 (3%)
Query: 155 LQRHQAEIQQ-EAELRLASKKIRSEQERELKEFRESQKQEMRLLKQEVDLMPKDRRKSMF 213
L EI + E + ++ +++ + + + + + ++ E +L + +L + +
Sbjct: 290 LYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEEL 349
Query: 214 KDRKEKLETEHEEREKLFLESLNENHESSLRRLSDTHRENLALMERQFLQQKQHL--MRA 271
K+ E LE E EE E E E+ L +T R +A +E Q + + A
Sbjct: 350 KEELESLEAELEELEAELEEL--ESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEA 407
Query: 272 REAALWEMEERQIHERQQHAKKQLKDGFFLQRHQMLIRHDKELEQLKRMNQRKIEELTKK 331
R L + ER E ++ KK L++ + L ++ELE+L+ +R E L +
Sbjct: 408 RLERLEDRRERLQQEIEELLKK-LEEAELKELQAELEELEEELEELQEELERLEEALEEL 466
Query: 332 Q 332
+
Sbjct: 467 R 467
Score = 30.4 bits (69), Expect = 2.1
Identities = 63/318 (19%), Positives = 120/318 (37%), Gaps = 19/318 (5%)
Query: 17 QQEAELRLASKKIRSEQERELKEFRESQKQEMRLLKQEVDLMPKDRRKSMFKDRKEKLET 76
++ AEL A ++R E E +E + +K+ L +++ + KD + + + +
Sbjct: 691 EKIAELEKALAELRKELEELEEELEQLRKELEE-LSRQISALRKDLARLEAEVEQLEERI 749
Query: 77 EHEEREKLFLE---SLNENHESSLRRLSDTHRENLALMERQFLQQKQHLMRAREAALWEM 133
+E LE E + +E Q Q K+ L REA +
Sbjct: 750 AQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREAL--DE 807
Query: 134 EERQIHERQQHAKKQLKDGFFLQRHQAEIQQEAELRLASKKIRSEQERELKEFRESQKQE 193
++ + A + L+R A ++ E + SE L E ++
Sbjct: 808 LRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEEL 867
Query: 194 MRLLKQEVDLMPKDRRKS---MFKDRKEKLETEHEEREKLFLESLNENHESSLRRLSDTH 250
+ L+ E++ + +R + R E E E RE E+ S LRR +
Sbjct: 868 IEELESELEALLNERASLEEALALLRSELEELSEELREL-------ESKRSELRRELEEL 920
Query: 251 RENLALMERQFLQQKQHLMRAREAALWEMEERQIHERQQHAKKQLKDGFFLQRHQMLIRH 310
RE LA +E + + + +E EE + + A + + + + L R
Sbjct: 921 REKLAQLELRLEGLEVRIDNLQERL---SEEYSLTLEEAEALENKIEDDEEEARRRLKRL 977
Query: 311 DKELEQLKRMNQRKIEEL 328
+ ++++L +N IEE
Sbjct: 978 ENKIKELGPVNLAAIEEY 995
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 35.5 bits (81), Expect = 0.060
Identities = 51/242 (21%), Positives = 108/242 (44%), Gaps = 14/242 (5%)
Query: 11 VSKAEIQQEAELRLASKKIRSEQER---------ELKEFRESQKQEMRLLKQEVDLMPKD 61
+ KAE ++AE + +++ + +E E K+ E++ +E+ L +E M +
Sbjct: 1551 LKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAE 1610
Query: 62 RRKSMFKDRKEKLETEHEEREKLFLESLNENHESSLRR---LSDTHRENLALMERQFLQQ 118
K + + + E + E EK +E L + ++ L EN + +
Sbjct: 1611 EAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKA 1670
Query: 119 KQHLMRAREAALWEMEERQIHERQQHAKKQLKDGFFLQRHQAEIQQEAELRLASKKIRSE 178
++ +A EA E +E++ E + ++ K L++ +AE +++AE +++
Sbjct: 1671 EEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKI 1730
Query: 179 QERELKEFRESQKQEMRLLKQEVDLMPKDRRKSMFKDRKEKLETEHEEREKLFLESLNEN 238
+ E K+ E K++ K D K + + K+ ++K E +E+E + E L+E
Sbjct: 1731 KAEEAKKEAEEDKKKAEEAK--KDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEE 1788
Query: 239 HE 240
E
Sbjct: 1789 DE 1790
Score = 34.3 bits (78), Expect = 0.12
Identities = 57/352 (16%), Positives = 150/352 (42%), Gaps = 14/352 (3%)
Query: 13 KAEIQQEAELRLASKKIRSEQERELKEFRESQKQEMRLLKQEVDLMPKD---RRKSMFKD 69
KAE ++AE K +++ E K+ E K+ K+ + K ++ + K
Sbjct: 1452 KAEEAKKAE-EAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKK 1510
Query: 70 RKEKLETEHEEREKLFLESLNENHESSLRRLSDTHRENLALMERQFLQQKQHLMRAREAA 129
+ ++ + E ++ + E ++ + ++ ++ L + + L++ + +A EA
Sbjct: 1511 KADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAK 1570
Query: 130 LWE----MEERQIHERQQHAKKQLKDGFFLQRHQAEIQQEAELRLASKKIRSEQERELKE 185
E M R+ E ++ + ++++ L + +++ E + KI++E+ ++ +E
Sbjct: 1571 KAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEE 1630
Query: 186 FRESQKQEMRLLKQEVDLMPKDRRKSMFKDRKEKLETEHEEREKLFLESLNENHESSLRR 245
++ +Q + +E + ++ K E + E +K E + E +
Sbjct: 1631 EKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKA 1690
Query: 246 LSDTHRENLALMERQFLQQKQHLMRAREAALWEMEE------RQIHERQQHAKKQLKDGF 299
+E + + L++K+ + + L + EE + + + KK+ ++
Sbjct: 1691 AEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAK 1750
Query: 300 FLQRHQMLIRHDKELEQLKRMNQRKIEELTKKQTIEKRALPKRIRSEMKIRE 351
+ + I H K+ E+ K RK +E ++ +++ +R+ + KI++
Sbjct: 1751 KDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKD 1802
Score = 29.0 bits (64), Expect = 6.7
Identities = 39/216 (18%), Positives = 98/216 (45%), Gaps = 9/216 (4%)
Query: 4 ETLTILLVSKAEIQQEAELRLASKKIRSEQERELKEFRESQKQEMRLLKQEVDLMPKDRR 63
E + L + +++ E + KI++E+ ++ +E ++ +Q + +E + ++
Sbjct: 1595 EEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKK 1654
Query: 64 KSMFKDRKEKLETEHEEREKLFLESLNENHESSLRRLSDTHRENLALMERQFLQQKQHLM 123
K E + E +K E + E + +E + + L++K+
Sbjct: 1655 AEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEE 1714
Query: 124 RAREAALWEMEERQIHERQQHAKKQLKDGFFLQRHQAEIQQEAELRLASKKIRSEQEREL 183
+ + L + EE + ++ K+ +D ++ E +++ E + KKI ++ E
Sbjct: 1715 KKKAEELKKAEEENKIKAEEAKKEAEED----KKKAEEAKKDEEEK---KKIAHLKKEEE 1767
Query: 184 KEFRESQKQEMRLLKQEVDLMPKDRRKSMFKDRKEK 219
K+ E +K++ ++++E+D +D ++ M D+K K
Sbjct: 1768 KKAEEIRKEKEAVIEEELD--EEDEKRRMEVDKKIK 1801
>gnl|CDD|173502 PTZ00266, PTZ00266, NIMA-related protein kinase; Provisional.
Length = 1021
Score = 33.9 bits (77), Expect = 0.15
Identities = 28/94 (29%), Positives = 51/94 (54%), Gaps = 2/94 (2%)
Query: 28 KIRSEQERELKEFRESQKQEMRLL-KQEVDLMPKDRRKSMFKDRKEKLETEHEEREKLFL 86
K +E+ R KE + EM++L K+ ++ + ++ R+ + ++R E++E E ERE+L
Sbjct: 432 KDHAERARIEKENAHRKALEMKILEKKRIERLEREERERLERERMERIERERLERERLER 491
Query: 87 ESLNENHESSLRRLSDTHRENLALMERQFLQQKQ 120
E L E RL RE + +ER L++ +
Sbjct: 492 ERL-ERDRLERDRLDRLERERVDRLERDRLEKAR 524
Score = 33.9 bits (77), Expect = 0.15
Identities = 28/94 (29%), Positives = 51/94 (54%), Gaps = 2/94 (2%)
Query: 174 KIRSEQERELKEFRESQKQEMRLL-KQEVDLMPKDRRKSMFKDRKEKLETEHEEREKLFL 232
K +E+ R KE + EM++L K+ ++ + ++ R+ + ++R E++E E ERE+L
Sbjct: 432 KDHAERARIEKENAHRKALEMKILEKKRIERLEREERERLERERMERIERERLERERLER 491
Query: 233 ESLNENHESSLRRLSDTHRENLALMERQFLQQKQ 266
E L E RL RE + +ER L++ +
Sbjct: 492 ERL-ERDRLERDRLDRLERERVDRLERDRLEKAR 524
>gnl|CDD|235551 PRK05667, dnaG, DNA primase; Validated.
Length = 580
Score = 33.3 bits (77), Expect = 0.21
Identities = 25/173 (14%), Positives = 64/173 (36%), Gaps = 10/173 (5%)
Query: 165 EAELRLASKKIRSEQERELKEFRESQKQEMRLLKQEVDLMPKDRRKSMFKDRKEKLETEH 224
+ E + + + R ++++ + LL Q +L + R +D
Sbjct: 418 DDAQLEQLVPKAQEPQLKAERPRTAERELLALLLQHPELAEEVRDALDEED-----FEGL 472
Query: 225 EEREKLFLESLNENHESSLRRLSDTHRENLALMERQFLQQKQHLMRAREAALWEMEERQI 284
L L + ++ +L + R+ L+ A + E + +
Sbjct: 473 PLFRALLEAILAQPGLTTGSQLLEHLRDAGLEELAALLES-----LAVWEEISEEDIAAL 527
Query: 285 HERQQHAKKQLKDGFFLQRHQMLIRHDKELEQLKRMNQRKIEELTKKQTIEKR 337
+ + A ++L+D +R + LI ++ LE ++ ++E L ++++
Sbjct: 528 EKELKDALEKLRDQLLEERLEELIAKERLLEGHGLSSEERLELLQLLIELKRK 580
>gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 548
Score = 32.5 bits (74), Expect = 0.39
Identities = 27/222 (12%), Positives = 76/222 (34%), Gaps = 15/222 (6%)
Query: 85 FLESLNENHESSLRRLSDTHRENLALMERQFLQQKQHLMRAREAALWEMEERQIHERQQH 144
+L++L + + + ++ + + + E + + + E+ +
Sbjct: 207 YLDALGRRRIAQVLQDAEIAENEAEKETEIAIAEANRDAKLVELEVEQQPAGKTAEQTRE 266
Query: 145 AKKQL----------KDGFFLQRHQAEIQQEAELRLASKKIRSEQERELKEFRESQKQEM 194
K L K + QAEI E ++ +K ++EQE + + E+++ +
Sbjct: 267 VKIILAETEAEVAAWKAETRREAEQAEILAEQAIQE--EKAQAEQEVQHAKALEAREMRV 324
Query: 195 RLLKQEVDLMPKDRRKSMFKDRKEKLETEHEEREKLFLESLNENHESSLRRLSDTHRENL 254
L++++ + + + +S F + + EE + + ++ + E
Sbjct: 325 GLIERQKETELEPQERSYFINAAQ--RQAQEEAKAAANIAEAIGAQAEAAVETARETEEA 382
Query: 255 ALMERQFLQQKQHLMRAREAALWEMEERQIHERQQHAKKQLK 296
E+ L + + E + ++K
Sbjct: 383 ERAEQAALVAAAEAAEQEQVEIAVRAE-AAKAEAEAQAAEIK 423
Score = 29.4 bits (66), Expect = 3.6
Identities = 24/158 (15%), Positives = 60/158 (37%), Gaps = 5/158 (3%)
Query: 14 AEIQQEAELRLASKKIRSEQERELKEFRESQKQEMRLLKQEVDLMPKDRRKSMFKDRKEK 73
AEI E ++ +K ++EQE + + E+++ + L++++ + + + +S F + +
Sbjct: 292 AEILAEQAIQE--EKAQAEQEVQHAKALEAREMRVGLIERQKETELEPQERSYFINAAQ- 348
Query: 74 LETEHEEREKLFLESLNENHESSLRRLSDTHRENLALMERQFLQQKQHLMRAREAALWEM 133
EE + + ++ + E E+ L + +
Sbjct: 349 -RQAQEEAKAAANIAEAIGAQAEAAVETARETEEAERAEQAALVAAAEAAEQEQVEIAVR 407
Query: 134 EERQIHERQQHAKKQLKDGFFLQRHQAEIQQEAELRLA 171
E + ++K R + + + EA+ LA
Sbjct: 408 AE-AAKAEAEAQAAEIKAEAEAIREKGKAEAEAKRALA 444
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division
and chromosome partitioning].
Length = 420
Score = 31.6 bits (72), Expect = 0.73
Identities = 37/217 (17%), Positives = 75/217 (34%), Gaps = 22/217 (10%)
Query: 159 QAEIQQEAELRLASKKIRSEQERELKEFRESQKQ-EMRLLKQEVDLMPKDRRKSMFKDRK 217
Q EI + + R++ E++LK E +L++ DL ++ + R
Sbjct: 44 QKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARL 103
Query: 218 EKLETEHEEREKLFLESLN-----ENHESSLRRLSDTHREN---LALMERQFLQQKQHLM 269
LE + E+ + E L + +S + LA+ + +
Sbjct: 104 NALEVQEREQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAERI 163
Query: 270 RAREAALWEM--------EERQIHERQ--QHAKKQLKDGFFLQRHQMLIRHDKELEQLKR 319
A +A L ++ E+ + +Q K L+ + + +L
Sbjct: 164 DALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLA---QLNSELS 220
Query: 320 MNQRKIEELTKKQTIEKRALPKRIRSEMKIREQMFRQ 356
+Q+K+EEL ++ K + + K RE
Sbjct: 221 ADQKKLEELRANESRLKNEIASAEAAAAKAREAAAAA 257
Score = 29.3 bits (66), Expect = 4.0
Identities = 33/194 (17%), Positives = 70/194 (36%), Gaps = 8/194 (4%)
Query: 13 KAEIQQEAELRLASKKIRSEQERELKEFRESQKQ-EMRLLKQEVDLMPKDRRKSMFKDRK 71
+ EI + + R++ E++LK E +L++ DL ++ + R
Sbjct: 44 QKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARL 103
Query: 72 EKLETEHEEREKLFLESLN-----ENHESSLRRLSDTHRENLALMERQFLQQKQHLMRAR 126
LE + E+ + E L + +S + + + R
Sbjct: 104 NALEVQEREQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLA-IYYGALNPARAER 162
Query: 127 EAALWEMEERQIHERQQHAKKQLKDGFFLQRHQAEIQQEAELRLASKKIRSEQERELKEF 186
AL ++ R + A +Q + L +A+ + A+L KK ++ EL
Sbjct: 163 IDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSA- 221
Query: 187 RESQKQEMRLLKQE 200
+ + +E+R +
Sbjct: 222 DQKKLEELRANESR 235
>gnl|CDD|237178 PRK12705, PRK12705, hypothetical protein; Provisional.
Length = 508
Score = 31.2 bits (71), Expect = 0.98
Identities = 33/146 (22%), Positives = 68/146 (46%), Gaps = 9/146 (6%)
Query: 136 RQIHERQQHAKKQLKDGFFLQRHQAEIQQEAELRL--ASKKIRSEQERELKEFR-ESQKQ 192
+ +RQ+ AK+ + Q+ E + A L + R++Q +E + R E Q++
Sbjct: 23 VLLKKRQRLAKEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREELQRE 82
Query: 193 EMRLLKQEVDLMPKDRRKSMFKDRKEKLETEHEEREKLFLESLNENHESSLRRLSDTHRE 252
E RL+++E L + + +++ E+ E RE LE L + ++ L R++ E
Sbjct: 83 EERLVQKEEQLDARAEKLDNLENQLEEREKALSAREL-ELEELEKQLDNELYRVAGLTPE 141
Query: 253 N-----LALMERQFLQQKQHLMRARE 273
L L++ + ++K ++ E
Sbjct: 142 QARKLLLKLLDAELEEEKAQRVKKIE 167
Score = 30.4 bits (69), Expect = 2.0
Identities = 26/117 (22%), Positives = 55/117 (47%), Gaps = 7/117 (5%)
Query: 17 QQEAELRLASKKIRSEQERELKEFR-ESQKQEMRLLKQEVDLMPKDRRKSMFKDRKEKLE 75
E + + R++Q +E + R E Q++E RL+++E L + + +++ E+ E
Sbjct: 52 AALLEAKELLLRERNQQRQEARREREELQREEERLVQKEEQLDARAEKLDNLENQLEERE 111
Query: 76 TEHEEREKLFLESLNENHESSLRRLSDTHREN-----LALMERQFLQQKQHLMRARE 127
RE LE L + ++ L R++ E L L++ + ++K ++ E
Sbjct: 112 KALSAREL-ELEELEKQLDNELYRVAGLTPEQARKLLLKLLDAELEEEKAQRVKKIE 167
>gnl|CDD|149105 pfam07851, TMPIT, TMPIT-like protein. A number of members of this
family are annotated as being transmembrane proteins
induced by tumour necrosis factor alpha, but no
literature was found to support this.
Length = 330
Score = 30.9 bits (70), Expect = 1.0
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 280 EERQIHERQQHAKKQLKDGFFLQRH--QMLIRHDKELEQLKRMNQRKIEELTKKQTIEKR 337
E +Q+ E + K++L++ LQ + R K L+QL ++ L K T E
Sbjct: 12 EFQQLQETHRLYKQKLEEVEKLQEQCTSAIARQRKRLKQLIVSLKK----LKKSLTPEDS 67
Query: 338 ALPKRIRSEMKIREQMFRQ 356
L +++ ++K R+ F
Sbjct: 68 ELVEQLEEQIKERKNQFFD 86
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 31.0 bits (70), Expect = 1.2
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 11 VSKAEIQQEAELRLASKKIRSEQERELKEFRESQKQ-EMRLLKQEVDLMPKDRRKSMFKD 69
++ +I E EL KK +E+ELK+ + +QK+ + +L Q+ +KS K
Sbjct: 7 EAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKKSEKKS 66
Query: 70 RKEKLETEHEE 80
RK +E E+ E
Sbjct: 67 RKRDVEDENPE 77
Score = 30.3 bits (68), Expect = 2.2
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 156 QRHQAEIQQEAELRLASKKIRSEQERELKEFRESQKQ-EMRLLKQEVDLMPKDRRKSMFK 214
+ +I E EL KK +E+ELK+ + +QK+ + +L Q+ +KS K
Sbjct: 6 SEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKKSEKK 65
Query: 215 DRKEKLETEHEE 226
RK +E E+ E
Sbjct: 66 SRKRDVEDENPE 77
>gnl|CDD|224486 COG1570, XseA, Exonuclease VII, large subunit [DNA replication,
recombination, and repair].
Length = 440
Score = 30.7 bits (70), Expect = 1.2
Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 13/123 (10%)
Query: 238 NHESSLRRLSDTHRENLALMERQFLQQKQHLMRAREAALWEMEERQIHERQQ---HAKKQ 294
+ L++L R + R Q+KQ L + ER + E+QQ +
Sbjct: 262 DSAELLQQLDQLQRRLHRALRRLLDQKKQRLEHLARRLQFRSPERLLSEQQQRLDELAIR 321
Query: 295 LKDG---FFLQRHQMLIRHDKELEQLKRMNQRKIEELTKKQTIEKRALPKRIRSEMKIRE 351
L+ + Q L R + L + Q+++++L +R L K +R ++K +
Sbjct: 322 LRRALENQLALKKQRLERLTQRLNPQIQRQQQRLQQL-------ERRLDKALRRQLKRKR 374
Query: 352 QMF 354
+
Sbjct: 375 ERL 377
Score = 29.9 bits (68), Expect = 2.6
Identities = 24/112 (21%), Positives = 45/112 (40%), Gaps = 3/112 (2%)
Query: 92 NHESSLRRLSDTHRENLALMERQFLQQKQHLMRAREAALWEMEERQIHERQQ---HAKKQ 148
+ L++L R + R Q+KQ L + ER + E+QQ +
Sbjct: 262 DSAELLQQLDQLQRRLHRALRRLLDQKKQRLEHLARRLQFRSPERLLSEQQQRLDELAIR 321
Query: 149 LKDGFFLQRHQAEIQQEAELRLASKKIRSEQERELKEFRESQKQEMRLLKQE 200
L+ Q + + E + + +I+ +Q+R + R K R LK++
Sbjct: 322 LRRALENQLALKKQRLERLTQRLNPQIQRQQQRLQQLERRLDKALRRQLKRK 373
>gnl|CDD|217817 pfam03961, DUF342, Protein of unknown function (DUF342). This
family of bacterial proteins has no known function. The
proteins are in the region of 500-600 amino acid
residues in length.
Length = 450
Score = 30.7 bits (70), Expect = 1.4
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 32 EQERELKEFRESQKQEMRLLKQEVDLMPKDRRKSMFKDRKEKLETEHEEREKLFLESLNE 91
E+ +EL+E + ++E+ +K+ + +PK R + +++E+LE E +EKL E L E
Sbjct: 334 EELKELEEELKELEEELEKIKKLLKKLPKKARGQLPPEKREQLEKLLETKEKL-SEELEE 392
Query: 92 NHE 94
E
Sbjct: 393 LEE 395
Score = 30.7 bits (70), Expect = 1.4
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 178 EQERELKEFRESQKQEMRLLKQEVDLMPKDRRKSMFKDRKEKLETEHEEREKLFLESLNE 237
E+ +EL+E + ++E+ +K+ + +PK R + +++E+LE E +EKL E L E
Sbjct: 334 EELKELEEELKELEEELEKIKKLLKKLPKKARGQLPPEKREQLEKLLETKEKL-SEELEE 392
Query: 238 NHE 240
E
Sbjct: 393 LEE 395
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 30.6 bits (70), Expect = 1.8
Identities = 25/114 (21%), Positives = 56/114 (49%), Gaps = 9/114 (7%)
Query: 117 QQKQHLMRAREAALWEMEERQIHERQQHAKKQLKDGFFLQRHQAEIQQEAELRLASKKIR 176
+++ +A EA E ++ E + K++L++ + + + E E + A K+ +
Sbjct: 528 LERELEQKAEEAEALLKEAEKLKEELEEKKEKLQE----EEDKLLEEAEKEAQQAIKEAK 583
Query: 177 SEQERELKEFRESQKQEMRLLK-QEVDLMPKDRRKSMFKDRKEKLETEHEEREK 229
E + +KE R+ QK +K E+ + RK + K ++K + + +++EK
Sbjct: 584 KEADEIIKELRQLQKGGYASVKAHEL----IEARKRLNKANEKKEKKKKKQKEK 633
Score = 29.4 bits (67), Expect = 3.6
Identities = 31/136 (22%), Positives = 57/136 (41%), Gaps = 13/136 (9%)
Query: 207 DRRKSMFKDRKEKLE-----TEHEEREKLFLESLNENHESSLRRLSDTHRENLALMERQF 261
+ K + + KEKL E ERE LE E E+ L+ E +E +
Sbjct: 505 EEAKKLIGEDKEKLNELIASLEELERE---LEQKAEEAEALLKEAEKLKEE----LEEKK 557
Query: 262 LQQKQHLMRAREAALWEMEERQIHERQQHAKKQLKDGFFLQRHQMLIRHDKELEQLKRMN 321
+ ++ + E A E ++ I E ++ A + +K+ LQ+ EL + ++
Sbjct: 558 EKLQEEEDKLLEEAEKEAQQA-IKEAKKEADEIIKELRQLQKGGYASVKAHELIEARKRL 616
Query: 322 QRKIEELTKKQTIEKR 337
+ E+ KK+ +K
Sbjct: 617 NKANEKKEKKKKKQKE 632
>gnl|CDD|233467 TIGR01554, major_cap_HK97, phage major capsid protein, HK97 family.
This model family represents the major capsid protein
component of the heads (capsids) of bacteriophage HK97,
phi-105, P27, and related phage. This model represents
one of several analogous families lacking detectable
sequence similarity. The gene encoding this component is
typically located in an operon encoding the small and
large terminase subunits, the portal protein and the
prohead or maturation protease [Mobile and
extrachromosomal element functions, Prophage functions].
Length = 384
Score = 30.0 bits (68), Expect = 2.3
Identities = 18/103 (17%), Positives = 36/103 (34%), Gaps = 6/103 (5%)
Query: 34 ERELKEFRESQKQEMRLLKQEVDLMPKDRRKSMFKDRKEKLE------TEHEEREKLFLE 87
+EL+E +E+R L ++ L + K+ + KE+++ EE
Sbjct: 1 LKELREALAELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEA 60
Query: 88 SLNENHESSLRRLSDTHRENLALMERQFLQQKQHLMRAREAAL 130
+ E + + A R +L+ + AL
Sbjct: 61 KPAASGEGGGGEEEEEEAKAEAAEFRAYLRGGDDALAEERKAL 103
Score = 30.0 bits (68), Expect = 2.3
Identities = 18/103 (17%), Positives = 36/103 (34%), Gaps = 6/103 (5%)
Query: 180 ERELKEFRESQKQEMRLLKQEVDLMPKDRRKSMFKDRKEKLE------TEHEEREKLFLE 233
+EL+E +E+R L ++ L + K+ + KE+++ EE
Sbjct: 1 LKELREALAELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEA 60
Query: 234 SLNENHESSLRRLSDTHRENLALMERQFLQQKQHLMRAREAAL 276
+ E + + A R +L+ + AL
Sbjct: 61 KPAASGEGGGGEEEEEEAKAEAAEFRAYLRGGDDALAEERKAL 103
>gnl|CDD|234376 TIGR03863, PQQ_ABC_bind, ABC transporter, substrate binding
protein, PQQ-dependent alcohol dehydrogenase system.
Members of this protein family are putative
substrate-binding proteins of an ABC transporter family
that associates, in gene neighborhood and phylogenomic
profile, with pyrroloquinoline-quinone (PQQ)-dependent
degradation of certain alcohols, such as 2-phenylethanol
in Pseudomonas putida U [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids].
Length = 347
Score = 30.0 bits (68), Expect = 2.4
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Query: 142 QQHAKKQLKDGFFLQRHQAEIQQEAE-LRLASKK--IRSEQERELK---EFRESQKQEMR 195
Q A K+ + +Q E A+ LR ++K+ ++ ER + R + + E+
Sbjct: 121 QYLAAKRWRRILLIQGPLPEDALFADALRRSAKRFGLKIVAERPFTFSGDPRRTDQAEVP 180
Query: 196 LLKQEVD 202
L Q D
Sbjct: 181 LFTQGAD 187
>gnl|CDD|130009 TIGR00934, 2a38euk, potassium uptake protein, Trk family. The
proteins of the Trk family are derived from
Gram-negative and Gram-positive bacteria, yeast and
wheat. The proteins of E. coli K12 TrkH and TrkG as well
as several yeast proteins have been functionally
characterized.The E. coli TrkH and TrkG proteins are
complexed to two peripheral membrane proteins, TrkA, an
NAD-binding protein, and TrkE, an ATP-binding protein.
This complex forms the potassium uptake system. This
family is specific for the eukaryotic Trk system
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 800
Score = 30.0 bits (67), Expect = 2.5
Identities = 38/238 (15%), Positives = 66/238 (27%), Gaps = 21/238 (8%)
Query: 26 SKKIRSEQERELKEF-RESQKQEMRLLKQEVDLMPKDRRKSMFKDRKEKLETEHEEREKL 84
S K R R RE + + + V + ++ F+D+ E +
Sbjct: 140 SSKQRFFLRRTKTLLQRELEDRPETGVAGRVTVPHGSAKRRDFQDKLFSGEFVKRDEPDQ 199
Query: 85 FLESLNENHESSLRRLSDTHRENLALMERQFLQQKQHLMRAREAALWEMEERQIHERQQH 144
+ + + +SD E A ++ + + M + IHER +
Sbjct: 200 NSPDVKSD-TRADESISDLEFEKFA------KRRGSRDVDPEDLYRSIMMLQGIHERIRE 252
Query: 145 AKKQLKDGFFLQRHQAEIQQEAELRLASKKIRSEQEREL------KEFRESQKQEMRLLK 198
+E QE R S + L K F ++ +
Sbjct: 253 KSSANSRS---DERSSESIQEQVERRPSTSDIERNSQSLTRRYDDKSFDKAVRLRRSKTI 309
Query: 199 ---QEVDLMPKDRRKSMFKDRKEKLETEHEEREKLFLESLNENHESSLRRLSDTHREN 253
+ DL DR K F+ H ++K F R N
Sbjct: 310 DRAEACDLEELDRAKD-FEKMTYDNWKAHHRKKKNFRPRGWNLKFRKASRFPKDSDRN 366
>gnl|CDD|178867 PRK00106, PRK00106, hypothetical protein; Provisional.
Length = 535
Score = 29.8 bits (67), Expect = 2.8
Identities = 27/119 (22%), Positives = 64/119 (53%), Gaps = 4/119 (3%)
Query: 29 IRSEQERELKEFRESQKQEMRLLKQEVDLMPKDRRKSMFKDRKEKLETEHEEREKLFLES 88
+R + ER+ + +++ K+E + LK+E+ L K+ + ++ +++ ++E +E ++ +ES
Sbjct: 47 LRGKAERDAEHIKKTAKRESKALKKELLLEAKEEARKYREEIEQEFKSERQELKQ--IES 104
Query: 89 LNENHESSLRRLSD--THRENLALMERQFLQQKQHLMRAREAALWEMEERQIHERQQHA 145
+SL R + + +E + Q L K + RE + ++EE++ E ++ A
Sbjct: 105 RLTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELERVA 163
Score = 29.8 bits (67), Expect = 2.8
Identities = 27/119 (22%), Positives = 64/119 (53%), Gaps = 4/119 (3%)
Query: 175 IRSEQERELKEFRESQKQEMRLLKQEVDLMPKDRRKSMFKDRKEKLETEHEEREKLFLES 234
+R + ER+ + +++ K+E + LK+E+ L K+ + ++ +++ ++E +E ++ +ES
Sbjct: 47 LRGKAERDAEHIKKTAKRESKALKKELLLEAKEEARKYREEIEQEFKSERQELKQ--IES 104
Query: 235 LNENHESSLRRLSD--THRENLALMERQFLQQKQHLMRAREAALWEMEERQIHERQQHA 291
+SL R + + +E + Q L K + RE + ++EE++ E ++ A
Sbjct: 105 RLTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELERVA 163
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains
separated by a hinge in the middle. The eukaryotic SMC
proteins form two kind of heterodimers: the SMC1/SMC3
and the SMC2/SMC4 types. These heterodimers constitute
an essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 29.6 bits (66), Expect = 3.5
Identities = 44/292 (15%), Positives = 100/292 (34%), Gaps = 10/292 (3%)
Query: 57 LMPKDRRKSMFK-------DRKEKLETEHEEREKLFLESLNENHESSLRRLSDTHRENLA 109
+M +RR + + RK+K + E L L + E + +
Sbjct: 150 MMKPERRLEIEEEAAGSREKRKKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKK 209
Query: 110 LMERQFLQQKQHLMRAREAALWEMEERQIHERQQHAKKQLKDGFFLQRHQAEIQQEAELR 169
+E L++K L L ++ + + + + E+++E E+
Sbjct: 210 ALEYYQLKEKLELEEENLLYLDYLKLNEERIDLLQELLRDEQEEIESS-KQELEKEEEIL 268
Query: 170 LASKKIRSEQERELKEFRESQKQEMRLLKQEVDLMPKDRRKSMFKDRKEKLETEHEER-- 227
K E+E+E K E K + ++ + K R+ + + K K + ++
Sbjct: 269 AQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLE 328
Query: 228 EKLFLESLNENHESSLRRLSDTHRENLALMERQFLQQKQHLMRAREAALWEMEERQIHER 287
++L E + + RE E Q + ++ L + E L + +
Sbjct: 329 KELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLS 388
Query: 288 QQHAKKQLKDGFFLQRHQMLIRHDKELEQLKRMNQRKIEELTKKQTIEKRAL 339
K+ + + + + EQ + + + + +E K + +L
Sbjct: 389 SAAKLKEEELELKNEEEKEAKLLLELSEQEEDLLKEEKKEELKIVEELEESL 440
Score = 28.8 bits (64), Expect = 6.1
Identities = 52/335 (15%), Positives = 119/335 (35%), Gaps = 10/335 (2%)
Query: 15 EIQQEAELRLASKKIRSEQERELKEFRESQKQEMRLLKQEVDLMPKDRRKSMFKDRKEKL 74
+ +L + +E+ K Q +E L++E L + + + +
Sbjct: 186 LAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEENLLYLDYLKLNEERIDLLQE 245
Query: 75 ETEHEEREKLFLESLNENHESSLRRLSDTHRENLALMERQFLQQKQHLMRAREAALWEME 134
E+ E + E E L ++ ++E + Q + K A+E + E
Sbjct: 246 LLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLL---AKEEEELKSE 302
Query: 135 ERQIHERQQHAKKQLKDGFFLQRHQAEIQQEAELRLASKKIRSEQERELKEFRESQKQEM 194
++ R+ +++LK + E+++ + K+ E E+ELKE ++ E
Sbjct: 303 LLKLERRKVDDEEKLK------ESEKELKKLEKELKKEKEEIEELEKELKELEIKREAEE 356
Query: 195 RLLKQEVDLMPKDRRKSMFKDRKEKLETEH-EEREKLFLESLNENHESSLRRLSDTHREN 253
+Q L K + K+KLE+E KL E L +E
Sbjct: 357 EEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKNEEEKEAKLLLELSE 416
Query: 254 LALMERQFLQQKQHLMRAREAALWEMEERQIHERQQHAKKQLKDGFFLQRHQMLIRHDKE 313
+ ++++ + E ++ ++ E ++ +KQ + +
Sbjct: 417 QEEDLLKEEKKEELKIVEELEESLETKQGKLTEEKEELEKQALKLLKDKLELKKSEDLLK 476
Query: 314 LEQLKRMNQRKIEELTKKQTIEKRALPKRIRSEMK 348
+L ++ ++ L +++ E + R +
Sbjct: 477 ETKLVKLLEQLELLLLRQKLEEASQKESKAREGLA 511
>gnl|CDD|234623 PRK00087, PRK00087, 4-hydroxy-3-methylbut-2-enyl diphosphate
reductase/S1 RNA-binding domain protein; Reviewed.
Length = 647
Score = 29.1 bits (66), Expect = 4.8
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 49 RLLKQEVDL----MPKDRRKSMFKDRKEKLETEHEEREKLFLESLNENH--ESSLRRLSD 102
QE+++ + RRK + RK LE E E++++ SL E E ++RL+D
Sbjct: 431 EYKGQELEVKIIEFNRKRRKKVVLSRKAILEEEKEKKKEETWNSLEEGDVVEGEVKRLTD 490
Score = 29.1 bits (66), Expect = 4.8
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 195 RLLKQEVDL----MPKDRRKSMFKDRKEKLETEHEEREKLFLESLNENH--ESSLRRLSD 248
QE+++ + RRK + RK LE E E++++ SL E E ++RL+D
Sbjct: 431 EYKGQELEVKIIEFNRKRRKKVVLSRKAILEEEKEKKKEETWNSLEEGDVVEGEVKRLTD 490
>gnl|CDD|221408 pfam12072, DUF3552, Domain of unknown function (DUF3552). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria, archaea and eukaryotes.
This domain is about 200 amino acids in length. This
domain is found associated with pfam00013, pfam01966.
This domain has a single completely conserved residue A
that may be functionally important.
Length = 201
Score = 27.9 bits (63), Expect = 6.6
Identities = 32/98 (32%), Positives = 56/98 (57%), Gaps = 9/98 (9%)
Query: 135 ERQIHERQQHAKKQLKDGFFLQRHQAEIQQEAEL--RLASKKIRSEQERELKEFR-ESQK 191
E +I ++ AK+ +++ ++ +++EA L + K+R+E ERELKE R E Q+
Sbjct: 26 EAKISSAEEEAKQIIEEA---KKEAEALKKEALLEAKEEIHKLRAEAERELKERRNELQR 82
Query: 192 QEMRLLKQEVDLMPKDRRKSMFKDRKEKLETEHEEREK 229
QE RLL++E L DR+ + ++E LE + +E
Sbjct: 83 QEKRLLQKEETL---DRKDESLEKKEESLEEKEKELAA 117
>gnl|CDD|227061 COG4717, COG4717, Uncharacterized conserved protein [Function
unknown].
Length = 984
Score = 28.3 bits (63), Expect = 8.5
Identities = 47/260 (18%), Positives = 84/260 (32%), Gaps = 9/260 (3%)
Query: 21 ELRLASKKIRSEQERELKEFRESQKQEMRLLKQEVDLMPKDRRKSMFKDRKEKLETEHEE 80
L S++ + EL+ + + +R L+ V+L P+ + + E+ T E
Sbjct: 208 HKLLESRRAEHARLAELRSELRADRDHIRALRDAVELWPRLQEWK----QLEQELTRRRE 263
Query: 81 REKLFLESLNENHESSLRRLSDTHRENLALMER--QFLQQKQHLMRAREAALWEMEERQI 138
F E L T E AL+ R + L+ A+EA L +
Sbjct: 264 ELATFPRDGVLRLEKREAHLQKTEAEIDALLVRLAELKDLASQLIPAKEAVLQALVRLHQ 323
Query: 139 HERQQHAKKQLKDGFFLQRHQAEIQQEAELRLASKKIRSEQERELKEFRESQKQEMRLLK 198
+ A +E + R R L+ Q + L +
Sbjct: 324 QLSEIKASAFELTETLAGIEADLRDKEEAAGNGFEAERVHDLRSLECMLRYQSSQRELKQ 383
Query: 199 QEVDLMPKDRRKSMFKDRKE---KLETEHEEREKLFLESLNENHESSLRRLSDTHRENLA 255
E + K +F+D E + +E E + E ++ ++ D
Sbjct: 384 TEAAYCKRLDEKRLFEDEAEEEARQRLADDEEEVRAGDEAREEKIAANSQVIDKEEVCNL 443
Query: 256 LMERQFLQQKQHLMRAREAA 275
R QKQ +R ++ A
Sbjct: 444 YDRRDTAWQKQRFLREKQTA 463
>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein.
Mitofilin controls mitochondrial cristae morphology.
Mitofilin is enriched in the narrow space between the
inner boundary and the outer membranes, where it forms a
homotypic interaction and assembles into a large
multimeric protein complex. The first 78 amino acids
contain a typical amino-terminal-cleavable mitochondrial
presequence rich in positive-charged and hydroxylated
residues and a membrane anchor domain. In addition, it
has three centrally located coiled coil domains.
Length = 493
Score = 28.1 bits (63), Expect = 8.5
Identities = 32/140 (22%), Positives = 63/140 (45%), Gaps = 16/140 (11%)
Query: 132 EMEERQIHERQQHAKKQLKDGFFLQRHQAEIQQEAELRLASKKIRSEQERELKEFRESQK 191
E++ + E ++ K++ ++ + + E++ K++R E ERE +E R+ +
Sbjct: 181 ELKAEEEEELERALKEKREELLSKLEEELLARLESKEAALEKQLRLEFEREKEELRKKYE 240
Query: 192 QEMRL------------LKQEVDLMPKDRRKSMFKDRKEKLETEHEEREKLFLESLN--- 236
+++R LK E+ L + ++ K+ KEK+E E R L LN
Sbjct: 241 EKLRQELERQAEAHEQKLKNELALQAIELQREFNKEIKEKVEEERNGR-LAKLAELNSRL 299
Query: 237 ENHESSLRRLSDTHRENLAL 256
+ E +L S+ EN +
Sbjct: 300 KGLEKALDSRSEAEDENHKV 319
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.127 0.332
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,026,232
Number of extensions: 2045441
Number of successful extensions: 5908
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4746
Number of HSP's successfully gapped: 836
Length of query: 392
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 293
Effective length of database: 6,546,556
Effective search space: 1918140908
Effective search space used: 1918140908
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.0 bits)