RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12208
(392 letters)
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 52.5 bits (126), Expect = 2e-07
Identities = 55/337 (16%), Positives = 124/337 (36%), Gaps = 35/337 (10%)
Query: 13 KAEIQQEAELRLASKKIRSEQERELKEFRESQKQEMRLLKQEVDLMP-KDRRKSMFKDRK 71
E+Q+ E + ++ E E++ + E + L+ E +L + + +K
Sbjct: 863 DEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKK 922
Query: 72 EKLE---TEHEEREKLFLESLNENHE--SSLRRLSDTHRENLALMERQFLQQKQHLMRAR 126
++LE E E R + E + +++ E L E Q+ Q
Sbjct: 923 QELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAA-RQKLQLEKVTA 981
Query: 127 EAALWEMEERQIHERQQHAKKQLKDGFFLQRHQAEIQQEAELRLASKKIRSEQERELKEF 186
+ + +ME+ + Q+ K L + + +++ + E+ + L +
Sbjct: 982 DGKIKKMEDDILIMEDQNNK--------LTKERKLLEERVSDLTTNLAEEEEKAKNLTKL 1033
Query: 187 RESQKQEMRLLKQEVDLMPKDRRKSMFKDRKEKLETEHEE--REKLFLESLNENHESSLR 244
+ + + L+ + K R++ + K KLE E + + L++ ++ L
Sbjct: 1034 KNKHESMISELEVRLKKEEKSRQE--LEKIKRKLEGESSDLHEQIAELQAQIAELKAQLA 1091
Query: 245 RLSDTHRENLALM--ERQFLQQKQHLMRAREAALWEMEERQIHERQQHAK--KQLKDGFF 300
+ + + LA + E +R E+ + +++E E+ K KQ +D
Sbjct: 1092 KKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRD--- 1148
Query: 301 LQRHQMLIRHDKELEQLKRMNQRKIEELTKKQTIEKR 337
+ELE LK + ++ +Q +
Sbjct: 1149 ---------LSEELEALKTELEDTLDTTATQQELRGS 1176
Score = 51.0 bits (122), Expect = 5e-07
Identities = 54/343 (15%), Positives = 118/343 (34%), Gaps = 11/343 (3%)
Query: 27 KKIRSEQERELKEFRESQKQEMRLLKQEVDLMPKDRRKSMFKDRKEKLETEHEEREKLFL 86
+RS + LLK + + KE+ + E ++L
Sbjct: 826 YNVRSFMNVXHWPWMXLFFXIXPLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQ 885
Query: 87 ESLNENHE-SSLRRLSDTHRENLALMERQFLQ---QKQHLMRAREAALW--EMEERQIHE 140
+ E + L+ E A E ++ +KQ L E EE + +
Sbjct: 886 KHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQ 945
Query: 141 RQQHAKKQLKDGFFLQRHQAEIQQEAELRLASKKIRSEQERELKEFRESQKQEMRLLKQE 200
Q KK + L+ E + + K + +++++ + + L +E
Sbjct: 946 LQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKE 1005
Query: 201 VDLMPKDRRKSMFKDRKEKLETEHEEREKLFLESLNENHESSLRRLSDTHRENLALMERQ 260
L+ + +E+ + ++ + K ES+ E L++ R+ L ++R+
Sbjct: 1006 RKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEK-SRQELEKIKRK 1064
Query: 261 FLQQKQHLMRAREAALWEMEERQIHERQQHAKKQLKDGFFLQRHQMLIRHDKELEQLKRM 320
+ L + E++ + + Q AKK+ + L R + + R
Sbjct: 1065 LEGESSDLHE----QIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRE 1120
Query: 321 NQRKIEELTKKQTIEKRALPKRIRSEMKIREQMFRQSMRISSS 363
+ I +L + EK A K + + + E++ + +
Sbjct: 1121 LESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDT 1163
Score = 44.4 bits (105), Expect = 6e-05
Identities = 58/267 (21%), Positives = 105/267 (39%), Gaps = 19/267 (7%)
Query: 13 KAEIQQEAELRLASKKIRSEQER--ELKEFRESQKQEMRLLKQEVDLMPKDRRKSMFKDR 70
+ + E L +I E+ER +L+ ++ +Q+M L+++++ R+K +
Sbjct: 920 AKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKV 979
Query: 71 KEKLETEHEEREKLFLESLNENHESSLRRLSDTHRE---NLALMERQF-----LQQKQHL 122
+ + E + L +E N + L + + NLA E + L+ K
Sbjct: 980 TADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHES 1039
Query: 123 MRAREAALWEMEERQIHERQQHAKKQLKDGFFLQRHQAEIQQE-AELRLASKKIRSEQER 181
M + + EE+ E ++ +K + L AE+Q + AEL+ K E +
Sbjct: 1040 MISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQA 1099
Query: 182 ELKEFRESQKQEMRLLKQEVDLMPKDRRKSMFKDRKEKLETEHEEREKL--FLESLNENH 239
L + Q+ LK+ +L +S D +E LE+E R K L+E
Sbjct: 1100 ALARLEDETSQKNNALKKIREL------ESHISDLQEDLESEKAARNKAEKQKRDLSEEL 1153
Query: 240 ESSLRRLSDTHRENLALMERQFLQQKQ 266
E+ L DT E + K
Sbjct: 1154 EALKTELEDTLDTTATQQELRGSDYKD 1180
Score = 41.7 bits (98), Expect = 4e-04
Identities = 32/217 (14%), Positives = 83/217 (38%), Gaps = 15/217 (6%)
Query: 4 ETLTILLVSKAEIQQEAELRLASKKIRSEQERELKEFRESQKQEMRLLKQEVDLMPKDRR 63
E + ++ + +++ I +++ K +E + E R+ +L ++ +
Sbjct: 967 EEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEK 1026
Query: 64 KSMFKDRKEKLETEHEEREKLFLESLNENHESSLRRLSDTHRENLALMER-----QFLQQ 118
K K E+ E E L+ ++ + + E+ L E+ + +
Sbjct: 1027 AKNLTKLKNKHESMISELEVR-LKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAE 1085
Query: 119 KQHLMRAREAALWEMEERQIHERQQHAK--KQLKDGFFLQRHQAEIQQEAE----LRLAS 172
+ + +E L R E Q K++++ L+ H +++Q++ E R +
Sbjct: 1086 LKAQLAKKEEELQAALARLEDETSQKNNALKKIRE---LESHISDLQEDLESEKAARNKA 1142
Query: 173 KKIRSEQERELKEFRESQKQEMRLLKQEVDLMPKDRR 209
+K + + EL+ + + + + +L D +
Sbjct: 1143 EKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYK 1179
Score = 41.0 bits (96), Expect = 7e-04
Identities = 26/197 (13%), Positives = 71/197 (36%), Gaps = 17/197 (8%)
Query: 4 ETLTILLVSKAEIQQEAELRLASKKIRSEQERELKEFRESQKQEMRLLKQEVDLMPKDRR 63
+ L + +++ + E+ + L + + + + L+ + K R+
Sbjct: 997 DQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQ 1056
Query: 64 KSMFKDRKEKLETEHEE--REKLFLESLNENHESSLRRLSDTHRENLALM--ERQFLQQK 119
+ + K KLE E + + L++ ++ L + + + LA + E
Sbjct: 1057 E--LEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNA 1114
Query: 120 QHLMRAREAALWEMEERQIHERQQHAKKQLKDGFFLQRHQAEIQQEAE---LRLASKKIR 176
+R E+ + +++E E+ K ++ + ++ +E E L
Sbjct: 1115 LKKIRELESHISDLQEDLESEKAARNK--------AEKQKRDLSEELEALKTELEDTLDT 1166
Query: 177 SEQERELKEFRESQKQE 193
+ ++EL+ +
Sbjct: 1167 TATQQELRGSDYKDDDD 1183
Score = 36.7 bits (85), Expect = 0.012
Identities = 38/270 (14%), Positives = 92/270 (34%), Gaps = 13/270 (4%)
Query: 116 LQQKQHLMRAREAALWEMEERQIHERQQHAKKQLKDGFFLQRHQAEIQQEAELRLASKKI 175
+Q W I + +++ + +Q E+Q+ E + ++
Sbjct: 824 IQYNVRSFMNVXHWPWMXLFFXIXPLLKVTRQEEE----MQAKDEELQRTKERQQKAEAE 879
Query: 176 RSEQERELKEFRESQKQEMRLLKQEVDLMP-KDRRKSMFKDRKEKLE---TEHEEREKLF 231
E E++ + E + L+ E +L + + +K++LE E E R +
Sbjct: 880 LKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEE 939
Query: 232 LESLNENHE--SSLRRLSDTHRENLALMERQFLQQKQHLMRAREAALWEMEERQIHERQQ 289
E + +++ E L E Q+ Q + + +ME+ + Q
Sbjct: 940 EERSQQLQAEKKKMQQQMLDLEEQLEEEEAA-RQKLQLEKVTADGKIKKMEDDILIMEDQ 998
Query: 290 HAKKQLKDGFFLQRHQMLIRHDKELEQLKRMNQRKIEELTKKQTIEKRALP--KRIRSEM 347
+ K + +R L + E E+ + + + + + L ++ R E+
Sbjct: 999 NNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQEL 1058
Query: 348 KIREQMFRQSMRISSSSTPDPEVEREKLKK 377
+ ++ + + + +LK
Sbjct: 1059 EKIKRKLEGESSDLHEQIAELQAQIAELKA 1088
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 51.6 bits (124), Expect = 3e-07
Identities = 34/222 (15%), Positives = 78/222 (35%), Gaps = 7/222 (3%)
Query: 9 LLVSKAEIQQEAELRLASKKIRSEQERELKEFRESQKQEMRLLKQEVDLMPKDRRKSMFK 68
+L I + +R ++ + + + + + M ++ L + R +K
Sbjct: 861 MLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYK 920
Query: 69 DRKEKLETEHEEREKLFLESLNENHESSLRRLSDTHRENLALMERQFLQQKQHLMRAREA 128
LE + + ++ ++ N+ ++S L ++++ E+ ++ M EA
Sbjct: 921 KLHIGLENKIMQLQRK-IDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEA 979
Query: 129 ALWEMEERQIHERQQHAKKQLKDGFFLQRHQAEIQQEAELRLASKKIRSEQERELKEFRE 188
+ E +K+L + Q E + E K + ELKE
Sbjct: 980 KNATNRVLSLQEEIAKLRKEL------HQTQTEKKTIEEWADKYKHETEQLVSELKEQNT 1033
Query: 189 SQKQEMRLLKQEVDLMPKDRRKSMFKDRKEKLETEHEEREKL 230
K E L + + K+ ++M K E+ + +
Sbjct: 1034 LLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDE 1075
Score = 51.6 bits (124), Expect = 3e-07
Identities = 31/263 (11%), Positives = 83/263 (31%), Gaps = 25/263 (9%)
Query: 95 SSLRRLSDTHRENLALMERQFLQQKQHLMRAREAALWEMEERQIHERQQHAKKQLKDGFF 154
R R LQ R + E + Q+H + L +
Sbjct: 824 KFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHY 883
Query: 155 LQRHQAEIQQEAELR-----LASKKIRSEQERELKEFRESQKQEMRLLKQEVDLMPKDRR 209
+ +A + + R KK++ E + + E ++++ + + +++
Sbjct: 884 HRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKE 943
Query: 210 KSMFKDRKEKLETEHEEREKLFLESLNENHESSLRRLSDTHRENLALMERQFLQQKQHLM 269
++ LE + + L S E S + L+L E + + + +
Sbjct: 944 YKSLLEKMNNLEITYSTETEK-LRSDVERLRMSEEEAKNATNRVLSLQEE--IAKLRKEL 1000
Query: 270 RAREAALWEMEERQIHERQQHAKKQLKDGFFLQRHQMLIRHDKELEQLKRMNQRKIEELT 329
+ +EE + + + EL++ + + + EEL
Sbjct: 1001 HQTQTEKKTIEEWADKYKHETEQLV-----------------SELKEQNTLLKTEKEELN 1043
Query: 330 KKQTIEKRALPKRIRSEMKIREQ 352
++ + + + + + ++ +
Sbjct: 1044 RRIHDQAKEITETMEKKLVEETK 1066
Score = 50.9 bits (122), Expect = 5e-07
Identities = 33/234 (14%), Positives = 83/234 (35%), Gaps = 16/234 (6%)
Query: 13 KAEIQQEAELRLASKKIRSEQERELKEFRESQKQEMRLLKQEVDLMPKDRRKSMFKDRKE 72
++ + ++ L K Q+ ++ R LK V L RR ++E
Sbjct: 851 GYLVRNKYQMMLREHKSIIIQKHVRGW--LARVHYHRTLKAIVYLQCCYRRM---MAKRE 905
Query: 73 KLETEHEEREKLFLESLNENHESSLRRLSDTHRENLALMERQFLQQKQHLMRAREAALWE 132
+ + E R + L+ E+ + +L + + ++ + M E +
Sbjct: 906 LKKLKIEARSVERYKKLHIGLENKIMQL----QRKIDEQNKE-YKSLLEKMNNLEIT-YS 959
Query: 133 MEERQIHERQQHAKKQLKDGFFLQRHQAEIQQEAELRLASKKIRSEQERELKEFRESQKQ 192
E ++ + + ++ +Q+E +++ ++E+ + K
Sbjct: 960 TETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKH 1019
Query: 193 EMRLLKQEVDLMPKDRRKSMFKDRKEKLETEHEEREKLFLESLNENHESSLRRL 246
E L E+ + ++ K KE+L ++ K E++ + ++L
Sbjct: 1020 ETEQLVSEL-----KEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQL 1068
Score = 47.4 bits (113), Expect = 7e-06
Identities = 43/287 (14%), Positives = 92/287 (32%), Gaps = 34/287 (11%)
Query: 66 MFKDRKEKLETEHEEREKLFLESLNENHESSLRRLSDTHRENLALMERQFLQQKQHLMRA 125
M+ RK L++L + R + Q +
Sbjct: 828 MYVVRKRYQCMRDATIA---LQALLRGYLV--RNKYQMMLREHKSIIIQKHVRGWLARVH 882
Query: 126 REAALWEMEERQIHERQQHAKKQLKDGFFLQRHQAEIQQEAELRLASKKIRSEQERELKE 185
L + Q R+ AK++LK +++ EA KK+ E ++ +
Sbjct: 883 YHRTLKAIVYLQCCYRRMMAKRELK----------KLKIEARSVERYKKLHIGLENKIMQ 932
Query: 186 FRESQKQEMRLLKQEVDLMPKDRRKSMFKDRKEKLETEHEEREKLFLESLNENHESSLRR 245
+ ++ + K ++ LE + + L S E S
Sbjct: 933 LQRKIDEQNKEYKSL-------------LEKMNNLEITYSTETEK-LRSDVERLRMSEEE 978
Query: 246 LSDTHRENLALMERQFLQQKQHLMRAREAALWEMEERQIHERQQHAKKQLKDGFFLQRHQ 305
+ L+L E +K+ E E + + +LK +++
Sbjct: 979 AKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELK-----EQNT 1033
Query: 306 MLIRHDKELEQLKRMNQRKIEELTKKQTIEKRALPKRIRSEMKIREQ 352
+L +EL + ++I E +K+ +E+ + ++ ++R Q
Sbjct: 1034 LLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLRYQ 1080
Score = 40.5 bits (95), Expect = 9e-04
Identities = 27/195 (13%), Positives = 73/195 (37%), Gaps = 11/195 (5%)
Query: 8 ILLVSKAEIQQEAELRLASKKIRSEQERELKEFRESQKQEMRLLKQEVDLMPKDRRKSMF 67
I+ + + A+ L KI + K+ + ++ L++++D KS+
Sbjct: 890 IVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQ-NKEYKSL- 947
Query: 68 KDRKEKLETEHEEREKLFLESLNENHESSLRRLSDTHRENLALMERQFLQQKQHLMRARE 127
++ LE + + L S E S + L+L E + + + + +
Sbjct: 948 LEKMNNLEITYSTETEK-LRSDVERLRMSEEEAKNATNRVLSLQEE--IAKLRKELHQTQ 1004
Query: 128 AALWEMEERQIHERQQHAKKQLKDGFFLQRHQAEIQQEAELRLASKKIRSEQERELKEFR 187
+EE + + + + L+ ++ E E +++I + + +
Sbjct: 1005 TEKKTIEEWADKYKHETEQLVSE----LKEQNTLLKTEKE--ELNRRIHDQAKEITETME 1058
Query: 188 ESQKQEMRLLKQEVD 202
+ +E + L+ +++
Sbjct: 1059 KKLVEETKQLELDLN 1073
Score = 30.5 bits (69), Expect = 1.3
Identities = 17/100 (17%), Positives = 38/100 (38%), Gaps = 5/100 (5%)
Query: 1 MSFETLTILLVSKAEIQQEAELRLASKKIRSEQERELKEFRESQKQEMRLLKQEVDLMPK 60
MS E +Q+E +++ ++E+ + K E L E+
Sbjct: 974 MSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSEL----- 1028
Query: 61 DRRKSMFKDRKEKLETEHEEREKLFLESLNENHESSLRRL 100
+ ++ K KE+L ++ K E++ + ++L
Sbjct: 1029 KEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQL 1068
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 51.2 bits (123), Expect = 4e-07
Identities = 27/218 (12%), Positives = 64/218 (29%), Gaps = 12/218 (5%)
Query: 113 RQFLQQKQHLMRAREAA--LWEMEERQIHERQQHAKKQLKDGFFLQRHQAEIQQEAELRL 170
++ Q M A + + + Q + L+ L + + +
Sbjct: 795 GDSIESVQSFMNAHKEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPN 854
Query: 171 ASKKIRSEQERELKEFRESQKQEMRLLKQEVDLMPKDRRKSMFKDRKEKLETEHEEREKL 230
S E+ +E E+ + E++ K+ L+ + + K + T+
Sbjct: 855 EIDSTWSALEKAEQEHAEALRIELKRQKKIAVLL--QKYNRILKKLENWATTKSVYLGSN 912
Query: 231 FLESLNENHESSLRRLSDTHRENLALMERQ------FLQQKQHLMRAREAALWEMEERQI 284
++ L+ L E +L + L Q L L E ++
Sbjct: 913 ETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFF 972
Query: 285 HERQQHAKKQLKDGFFLQRHQMLIRHDKELEQLKRMNQ 322
++ K + + +++E L +
Sbjct: 973 AQQWTGVKSSAETYK--NTLLAELERLQKIEDLHHHHH 1008
Score = 43.9 bits (104), Expect = 9e-05
Identities = 19/210 (9%), Positives = 61/210 (29%), Gaps = 14/210 (6%)
Query: 113 RQFLQQKQHLMRAREAALWEMEERQIHERQQHAKKQLKDGFFLQRHQAEIQQEAELRLAS 172
+ ++ + + +E + E + + + K++ + L A
Sbjct: 808 HKEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAE 867
Query: 173 KKIRSEQERELKEFRESQKQEMRLLKQEVDLMPKDRRKSMFKDRKEKLETEHEEREKLFL 232
++ ELK R+ + + + + ++ + L + +
Sbjct: 868 QEHAEALRIELK--RQKKIAVLLQKYNRI----LKKLENWATTKSVYLGSNETGDSITAV 921
Query: 233 ESLNENHESSLRRL------SDTHRENLALMERQFLQQKQHLMRAREAALWEMEERQIHE 286
++ +N E+ S++ ++ + + R+ + + +
Sbjct: 922 QAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKS 981
Query: 287 RQQHAKKQLKDGFFLQRHQMLIRHDKELEQ 316
+ K L L+R Q +
Sbjct: 982 SAETYKNTLLA--ELERLQKIEDLHHHHHH 1009
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 48.7 bits (115), Expect = 3e-06
Identities = 42/294 (14%), Positives = 84/294 (28%), Gaps = 79/294 (26%)
Query: 52 KQEVDLMPKDRRKSMFKDRKEKLETEHEEREKLFLESLNENHESSLRRLSDTHRENLALM 111
KQ D + + D T +E + L L+ L+ + R + T+ L+++
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTP-DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII 333
Query: 112 ERQFLQQKQHLMRAREAALWEMEERQIHERQQHAKKQLKDGFFLQRHQAEIQQEAELRLA 171
+ L W+ + ++ + L + + AE R
Sbjct: 334 AESI---RDGLAT------WDNWKHVNCDKLTTIIES-----SL-----NVLEPAEYR-- 372
Query: 172 SKKIRSEQERELKEFRESQKQEMRLL--------KQEV-DLMPKDRRKSM-FKDRKEKLE 221
+ L F S LL K +V ++ K + S+ K KE
Sbjct: 373 ------KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI 426
Query: 222 TEHEEREKLFLESLNENHESSLRRLSDTHRENLALMERQFLQQKQHLMRAREAALWEMEE 281
+ ++LE EN + R + + + +
Sbjct: 427 SIPS----IYLELK-------------VKLENEYALHRSIVDHYN-IPKTFD-------- 460
Query: 282 RQIHERQQHAKKQLKDGFFLQ---RHQMLIRHDKELEQLKR--MN----QRKIE 326
D +F H I H + + + ++ ++KI
Sbjct: 461 ------SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR 508
Score = 44.5 bits (104), Expect = 6e-05
Identities = 44/431 (10%), Positives = 129/431 (29%), Gaps = 108/431 (25%)
Query: 10 LVSKAEI-------QQEAELRLASKKIRSEQERELKEF-RESQKQEMRLLKQEVDLMPKD 61
++SK EI + + S+QE +++F E + + L + +
Sbjct: 45 ILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ 104
Query: 62 R--RKSMFKDRKEKLETEHEEREKLFLESLNENHE--SSLRRLSDTHRENLAL--M---- 111
M+ +++++L +++ K + L + +L L +N+ + +
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA--KNVLIDGVLGSG 162
Query: 112 --------------ERQF------------------LQQKQHLMRAREAALWEMEERQIH 139
+ + L+ Q L+ + + +
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 140 ERQ--QHAKKQLKDGFFLQRHQ-----------AEI----------------QQEAELRL 170
+ + +L+ + ++ A+ +Q +
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS 282
Query: 171 ASKKIRSEQERELKEFRESQKQEM--RLLKQEVDLMPKDRRK------SMFKDRKEKLET 222
A+ + + + + + L +P++ S+ +
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA 342
Query: 223 EHEEREKLFLESLNENHESSLRRLS-DTHR---ENLALMERQFLQQKQHLMRAREAALW- 277
+ + + + L ESSL L +R + L++ H+ + +W
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV-----FPPSAHIPTILLSLIWF 397
Query: 278 EMEERQIHE------RQQHAKKQLKDG-FFLQRHQMLIRHDKELEQLKRMNQRKIEELTK 330
++ + + + +KQ K+ + + + +LE +++ ++
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPKESTISI--PSIYLELKVKLENEYALHRSIVDHYNI 455
Query: 331 KQTIEKRALPK 341
+T + L
Sbjct: 456 PKTFDSDDLIP 466
Score = 42.5 bits (99), Expect = 2e-04
Identities = 67/481 (13%), Positives = 134/481 (27%), Gaps = 142/481 (29%)
Query: 1 MSFETLTILLVSKAEIQQEAELRLASKKIRSEQERELKEFRESQKQEMRLLKQEVDLMPK 60
M FET E + K I L F ++ ++V
Sbjct: 7 MDFET--------------GEHQYQYKDI-------LSVFEDAFVDNFDC--KDVQ---- 39
Query: 61 DRRKSMFKDR--KEKLETEH-EEREKLFLESLNENHESSLRR-LSDTHRENLA-LMERQF 115
D KS+ + ++ +L E +++ + + R N LM
Sbjct: 40 DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK 99
Query: 116 LQQKQHLMRAREAALWEMEERQIHERQQHAKKQLKDGFFLQRHQAEIQQEAELRLASKKI 175
+Q+Q + ++ + +++ Q K + + R +Q +LR A ++
Sbjct: 100 TEQRQ---PSMMTRMYIEQRDRLYNDNQVFAK-----YNVSR----LQPYLKLRQALLEL 147
Query: 176 RSE---------------------QERELKE----------FRESQKQEMRLLKQE---- 200
R +++ + E L +
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207
Query: 201 -VDLMPKDRRKSMFKDRKEKLETEHEEREKLFLESLNENHESSLRRLSDTHRENLALMER 259
+D R + + E R L ++ +E+ L L +
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK----SKPYENCLLVLLNVQNAKAW---N 260
Query: 260 QFLQQKQHLM--RAREAALWEMEERQIHERQQHAKKQLKD----GFFLQ---------RH 304
F + L+ R ++ + H H L L+
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320
Query: 305 QM-------------LIRHDKE-LEQLKRMNQRKIEELTKKQTIEKRAL-PKRIRS---E 346
++ IR + K +N K+ + + ++ L P R
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES-SLN--VLEPAEYRKMFDR 377
Query: 347 MKIREQMFRQSMRISS---------SSTPDPEVEREKLKKVSVL------GTIDVPSVHE 391
+ + F S I + D V KL K S++ TI +PS++
Sbjct: 378 LSV----FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433
Query: 392 D 392
+
Sbjct: 434 E 434
Score = 35.6 bits (81), Expect = 0.034
Identities = 25/172 (14%), Positives = 57/172 (33%), Gaps = 27/172 (15%)
Query: 156 QRHQAEIQQE-AELRLASKKIRSEQERELKEFRESQKQEMRLLKQEVDLMPKDRRKSMFK 214
H + E E + K I L F ++ ++V D KS+
Sbjct: 1 HHHHHHMDFETGEHQYQYKDI-------LSVFEDAFVDNFDC--KDVQ----DMPKSILS 47
Query: 215 DR--KEKLETEH-EEREKLFLESLNENHESSLRR-LSDTHRENLA-LMERQFLQQKQHLM 269
+ ++ +L E +++ + + R N LM +Q+Q
Sbjct: 48 KEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ--- 104
Query: 270 RAREAALWEMEERQIHERQQHAKKQLKDGFFLQRHQMLIRHDKELEQLKRMN 321
+ ++ + +++ Q K + + R Q ++ + L +L+
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFAK-----YNVSRLQPYLKLRQALLELRPAK 151
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.0 bits (93), Expect = 0.001
Identities = 45/254 (17%), Positives = 84/254 (33%), Gaps = 81/254 (31%)
Query: 144 HAKKQLKDGFFLQRHQA--------EIQQEAELRLASKKIRSEQERELKEFRESQKQEMR 195
A QL++ F + E AEL + +F +
Sbjct: 29 IAS-QLQEQFNKILPEPTEGFAADDEPTTPAEL--------------VGKF-------LG 66
Query: 196 LLKQEVDLMPKDRRKSMFKDRKEKLETEHEEREKLFLESLNENHE--SSLRRLSDTHREN 253
+ V+ S + L E E +LE N+ H + L + +DT
Sbjct: 67 YVSSLVE-------PSKVGQFDQVLNLCLTEFENCYLEG-NDIHALAAKLLQENDTTLVK 118
Query: 254 LALMERQFLQ----QKQHLMRAREAALWEMEERQIHERQQHAKK------Q-LKDGFFLQ 302
+ + ++ K+ + +AL+ + +A+ Q D +F
Sbjct: 119 TKELIKNYITARIMAKRPFDKKSNSALFR------AVGEGNAQLVAIFGGQGNTDDYF-- 170
Query: 303 RHQMLIRHDKELEQLKRMNQRKIEELTKKQTIEKRA--LPKRIRSEMKIREQMFRQSMRI 360
+EL L + + +L I+ A L + IR+ + E++F Q + I
Sbjct: 171 ---------EELRDLYQTYHVLVGDL-----IKFSAETLSELIRTTLDA-EKVFTQGLNI 215
Query: 361 SS-----SSTPDPE 369
S+TPD +
Sbjct: 216 LEWLENPSNTPDKD 229
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 37.9 bits (89), Expect = 0.006
Identities = 34/161 (21%), Positives = 69/161 (42%), Gaps = 39/161 (24%)
Query: 51 LKQEVDLMPKD----RRKSMFKDRKEKLETEHEEREKLFLESLNENHESSLRRLSDTHRE 106
L+ ++ P++ RK + +LE E E +K E S RL E
Sbjct: 392 LRMALESAPEEIDALERKKL------QLEIEREALKK-------EKDPDSQERLKAIEAE 438
Query: 107 NLALMERQFLQQKQHLMRAREAALWEMEERQIHERQQHAKKQLKDGFFLQRHQAEI-QQE 165
+A L ++ +RA WE ER+I + + A+ +L + R + E+ +++
Sbjct: 439 -IAK-----LTEEIAKLRAE----WE-REREILRKLREAQHRLDE----VRREIELAERQ 483
Query: 166 AELRLASK----KIRSEQERELKEFRESQKQEMRLLKQEVD 202
+L A++ ++ + E E++ + + R ++ EV
Sbjct: 484 YDLNRAAELRYGEL-PKLEAEVEA-LSEKLRGARFVRLEVT 522
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 36.3 bits (83), Expect = 0.016
Identities = 31/227 (13%), Positives = 66/227 (29%), Gaps = 9/227 (3%)
Query: 10 LVSKAEIQQEAELRLASKKIRSEQERELKEFRESQKQEMRLLKQEVDLMPKDRRKSMFKD 69
++ A E + R+ F ++ + Q V+ + + R ++ +
Sbjct: 598 IIRMAVFGFEMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQRS 657
Query: 70 RKEKLETEHEEREKLFLESLNENHESSLRRLSDTHRENLALMERQFLQQKQHLMRAREAA 129
+ +E +E + + RL R+ + +K+ L +
Sbjct: 658 VQLAIEITTNSQEAAAKHEAQRLEQEARGRLE---RQKILDQSEAEKARKELLELEAMSM 714
Query: 130 LWEMEERQIHERQQHAKKQLKDGFF------LQRHQAEIQQEAELRLASKKIRSEQEREL 183
E E + A+ +G L+ I+ EAEL K E
Sbjct: 715 AVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYAR 774
Query: 184 KEFRESQKQEMRLLKQEVDLMPKDRRKSMFKDRKEKLETEHEEREKL 230
+ + +L E + ++ E + KL
Sbjct: 775 AQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLAVAGPEMQVKL 821
Score = 31.3 bits (70), Expect = 0.64
Identities = 20/219 (9%), Positives = 61/219 (27%), Gaps = 5/219 (2%)
Query: 78 HEEREKLFLESLNENHESSLRRLSDTHRENLALMERQFLQQKQHLMRAREAALWEMEERQ 137
E + ++ + + + ++ ++ Q ++ R ++
Sbjct: 605 GFEMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEI 664
Query: 138 IHERQQHAKKQLKDGFFLQRHQAEIQQEAELRLASKKIRSEQERELKEFRESQKQEMRLL 197
Q+ A K QR + E + E + + +E+ R+ E+ +
Sbjct: 665 TTNSQEAAAKHEA-----QRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVEST 719
Query: 198 KQEVDLMPKDRRKSMFKDRKEKLETEHEEREKLFLESLNENHESSLRRLSDTHRENLALM 257
+ + L+ + + + +R + + +
Sbjct: 720 GNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLEL 779
Query: 258 ERQFLQQKQHLMRAREAALWEMEERQIHERQQHAKKQLK 296
E QQ ++ + + E A +++
Sbjct: 780 EVSKAQQLANVEAKKFKEMTEALGPGTIRDLAVAGPEMQ 818
Score = 30.2 bits (67), Expect = 1.4
Identities = 26/195 (13%), Positives = 64/195 (32%), Gaps = 3/195 (1%)
Query: 40 FRESQKQEMRLLKQEVDLMPKDRRKSMFKDRKEKL-ETEHEEREKLFLESLNENHESSLR 98
F + K R+++ V K + + L + S++ +
Sbjct: 588 FDDFHKNSARIIRMAVFGFEMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSVEPVD 647
Query: 99 RLSDTHRENLALMERQFLQQKQHLMRAREAALWEMEERQIHERQQHAKKQLKDGFFLQRH 158
+ + + + + Q EA E E R ERQ+ + + ++
Sbjct: 648 QRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAE--KARKE 705
Query: 159 QAEIQQEAELRLASKKIRSEQERELKEFRESQKQEMRLLKQEVDLMPKDRRKSMFKDRKE 218
E++ + ++ ++E E + R + + K + + + + + +K
Sbjct: 706 LLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKV 765
Query: 219 KLETEHEEREKLFLE 233
+ R +L LE
Sbjct: 766 REMELIYARAQLELE 780
Score = 28.6 bits (63), Expect = 3.9
Identities = 28/207 (13%), Positives = 63/207 (30%), Gaps = 22/207 (10%)
Query: 175 IRSEQERELKEFRESQKQEMRLLKQEVDLMPKDRRKSMFKDRKEKLETEHEEREKLFLES 234
+ + + + Q L E+ ++ R E+ ER+K+ +S
Sbjct: 638 VDVQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQS 697
Query: 235 LNENHESSLRRLSDTHRENLALMERQFLQQKQHLMRAREAALWEMEERQIHERQQHAKKQ 294
E L L + A+ A E +I + +
Sbjct: 698 EAEKARKELLEL------------EAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAK 745
Query: 295 LKDGFFLQRHQMLIRHDKELEQLKRMNQRKIEELTKKQTIEKRALPKRIRSEMKIREQMF 354
LK + I + ELE++K++ + ++ + +E + + + + F
Sbjct: 746 LK------AQALAIETEAELERVKKVREMELIYARAQLELEV----SKAQQLANVEAKKF 795
Query: 355 RQSMRISSSSTPDPEVEREKLKKVSVL 381
++ T +V +L
Sbjct: 796 KEMTEALGPGTIRDLAVAGPEMQVKLL 822
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 33.6 bits (76), Expect = 0.059
Identities = 15/80 (18%), Positives = 30/80 (37%), Gaps = 4/80 (5%)
Query: 162 IQQEAELRLASKKIRSEQERELKEFRESQKQEMRLLKQEVDLMPKDRRKSMFKDRKEKLE 221
I Q L + IR +E + K +E ++QE K + + + E++E
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRLQELDAASKV-MEQEWREKAKKDLEEWNQRQSEQVE 132
Query: 222 TEHEE---REKLFLESLNEN 238
+K F + + +
Sbjct: 133 KNKINNRIADKAFYQQPDAD 152
Score = 29.4 bits (65), Expect = 1.4
Identities = 11/60 (18%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 124 RAREAALWEMEERQIHERQQHAKKQLKDGFFLQRHQAEIQQEAELRLASKKIRSEQEREL 183
R R L + E ++ AKK L++ + ++ + + + R+A K + + ++
Sbjct: 95 RKRLQELDAASKVMEQEWREKAKKDLEE-WNQRQSEQVEKNKINNRIADKAFYQQPDADI 153
>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme,
streptolydigin, antibiotic, transcription regulation;
HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2
PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D*
2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D*
3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D
Length = 1524
Score = 34.0 bits (78), Expect = 0.10
Identities = 26/227 (11%), Positives = 63/227 (27%), Gaps = 12/227 (5%)
Query: 10 LVSKAEIQQEAELRLASKKIRSEQERELKEFRESQKQEMRLLK--QEVDLMPKDRRKS-- 65
+ QE + S+ R + R ++ R + K+ K
Sbjct: 181 DGEEVVKGQELAPGVVSRLDGVALYRFPRRVRVEYVKKERAGLRLPLAAWVEKEAYKPGE 240
Query: 66 MFKDRKEKLETEHEEREKLFLESLNE-------NHESSLRRLSDTHRENLALMERQFLQQ 118
+ + E EE + L+ L E + + ++ + +++
Sbjct: 241 ILAELPEPYLFRAEEEGVVELKELEEGAFLVLRREDEPVATYFLPVGMTPLVVHGEIVEK 300
Query: 119 KQHLMRAREAALWEMEERQIHERQQHAKKQLKDGFFLQRHQAEIQQEAELRLASKKIRSE 178
Q L A+ + R + + + FL+ + + + +
Sbjct: 301 GQPLAEAKGLLRMPRQVRAAQVEAEEEGETVYLTLFLEWTEPKDYRVQPHMNVVVPEGAR 360
Query: 179 QERELKEFRESQKQEMRLLKQEVDLMPKDRRKSMFKDRKEKLETEHE 225
E K +E + + E + S+ + E +
Sbjct: 361 VEAGDKIVAAIDPEEEVIAEAEGVVH-LHEPASILVVKARVYPFEDD 406
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 33.4 bits (75), Expect = 0.13
Identities = 33/275 (12%), Positives = 100/275 (36%), Gaps = 3/275 (1%)
Query: 9 LLVSKAEIQQEAELRLASKKIRSEQERELKEFRESQKQEMRLLKQEVDLMPKDRRKSMFK 68
+++ A+I+ A ++ A + ++++ ES ++ + L + + +S FK
Sbjct: 315 AVLALAQIENSAAVQKAIAHYEQQMGQKVQLPTESLQELLDLHRDSEREAIEVFIRSSFK 374
Query: 69 DRKEKLETEHEEREKLFLESLNENHESSLRRLSDTHRENLALMERQFLQQKQHLMRAREA 128
D + E + + + + ++ + + + + ++ +
Sbjct: 375 DVDHLFQKELAAQLEKKRDDFCKQNQEASSDRCSGLLQVIFSPLEEEVKAGIYSKPGGYR 434
Query: 129 ALWEMEERQIHERQQHAKKQLKDGFFLQRHQAEIQQEAELRLASKKIRSEQERELKEFRE 188
+ + + + +K ++ LQ + + + L + + +E+E+E++ R
Sbjct: 435 LFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERV 494
Query: 189 SQKQEMRLLKQEVDLMPKDRRKSMFKDRKEKLETEHEEREKLFLESLNENHESSLRRLSD 248
+ K L R+ ++KE+ EH ++ +E+ R
Sbjct: 495 KAESAQASAKM---LHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLA 551
Query: 249 THRENLALMERQFLQQKQHLMRAREAALWEMEERQ 283
+ + ++ Q++ +M+ L R+
Sbjct: 552 LKLQEQEQLLKEGFQKESRIMKNEIQDLQTKMRRR 586
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 30.6 bits (68), Expect = 1.2
Identities = 35/340 (10%), Positives = 101/340 (29%), Gaps = 6/340 (1%)
Query: 1 MSFETLTILLVSKAEIQQEAELRLASKKIRSEQERELKEFRESQKQEMRLLKQEVDLMPK 60
+ + + A + E E+ ++++ + + +++ + +
Sbjct: 216 TYVSSFYHAFSGAQKAETAANRICKVLAVNQENEQLMEDYEKLASDLLEWIRRTIPWLEN 275
Query: 61 DRRKSMFKDRKEKLETEHEEREKLFLESLNENHESSLRRLSDTHRENLALMERQFLQQKQ 120
++ + ++KLE + R + E + L +T + L L R +
Sbjct: 276 RAPENTMQAMQQKLEDFRDYRRLHKPPKVQEKCQ--LEINFNTLQTKLRLSNRPAFMPSE 333
Query: 121 HLMRAREAALWEMEERQIHERQQHAKKQLKDGFFLQRHQAEIQQEAELRLA----SKKIR 176
M + W E+ ++ +++ L + +Q+A + + + +
Sbjct: 334 GKMVSDINNAWGGLEQAEKGYEEWLLNEIRRLERLDHLAEKFRQKASIHESWTDGKEAML 393
Query: 177 SEQERELKEFRESQKQEMRLLKQEVDLMPKDRRKSMFKDRKEKLETEHEEREKLFLESLN 236
+++ E E + + E DL R ++L
Sbjct: 394 QQKDYETATLSEIKALLKKHEAFESDLAAHQDRVEQIAAIAQELNELDYYDSPSVNARCQ 453
Query: 237 ENHESSLRRLSDTHRENLALMERQFLQQKQHLMRAREAALWEMEERQIHERQQHAKKQLK 296
+ + + T + AL + L + + A + + +
Sbjct: 454 KICDQWDNLGALTQKRREALERTEKLLETIDQLYLEYAKRAAPFNNWMEGAMEDLQDTFI 513
Query: 297 DGFFLQRHQMLIRHDKELEQLKRMNQRKIEELTKKQTIEK 336
+ + H++ L ++ + L + K
Sbjct: 514 VHTIEEIQGLTTAHEQFKATLPDADKERQAILGIHNEVSK 553
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 1.7
Identities = 7/58 (12%), Positives = 20/58 (34%), Gaps = 30/58 (51%)
Query: 330 KKQTIEKRALPKRIRSEMKIREQMFRQSMRISSSSTPD--PEVEREKLKKVSVLGTID 385
+KQ + K++++ +K+ D P +++ T++
Sbjct: 18 EKQAL------KKLQASLKLYA--------------DDSAP--------ALAIKATME 47
Score = 28.4 bits (62), Expect = 2.4
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 12/39 (30%)
Query: 77 EHEEREKLFLESLNENHESSLRRLSDTHRENLAL---ME 112
E + +KL ++SL+ +D LA+ ME
Sbjct: 18 EKQALKKL---------QASLKLYADDSAPALAIKATME 47
Score = 28.4 bits (62), Expect = 2.4
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 12/39 (30%)
Query: 223 EHEEREKLFLESLNENHESSLRRLSDTHRENLAL---ME 258
E + +KL ++SL+ +D LA+ ME
Sbjct: 18 EKQALKKL---------QASLKLYADDSAPALAIKATME 47
Score = 26.8 bits (58), Expect = 7.6
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 7/30 (23%)
Query: 313 ELEQLKRMNQR-KIEE------LTKKQTIE 335
E + LK++ K+ L K T+E
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATME 47
>3um7_A Potassium channel subfamily K member 4; potassium ION channel,
metal transport; 3.31A {Homo sapiens}
Length = 309
Score = 28.6 bits (63), Expect = 3.5
Identities = 10/64 (15%), Positives = 20/64 (31%), Gaps = 3/64 (4%)
Query: 74 LETEHEEREKLFLESLNENHESSLRRLSDTHRENLALMERQFLQQKQHLMRAREAALWEM 133
LE HE++ + L + E LR + L L+ ++ + +
Sbjct: 53 LEQPHEQQAQRELGEVREKF---LRAHPCVSDQELGLLIKEVADALGGGADPETQSTSQS 109
Query: 134 EERQ 137
Sbjct: 110 SHSA 113
Score = 28.6 bits (63), Expect = 3.5
Identities = 10/64 (15%), Positives = 20/64 (31%), Gaps = 3/64 (4%)
Query: 220 LETEHEEREKLFLESLNENHESSLRRLSDTHRENLALMERQFLQQKQHLMRAREAALWEM 279
LE HE++ + L + E LR + L L+ ++ + +
Sbjct: 53 LEQPHEQQAQRELGEVREKF---LRAHPCVSDQELGLLIKEVADALGGGADPETQSTSQS 109
Query: 280 EERQ 283
Sbjct: 110 SHSA 113
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase,
N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Length = 526
Score = 28.7 bits (63), Expect = 4.4
Identities = 24/134 (17%), Positives = 49/134 (36%), Gaps = 3/134 (2%)
Query: 195 RLLKQEVDLMPKDRRKSMFKDRKEKLETEHEEREKLFLESLNENHESSLRRLSDTHRENL 254
R+ + +D P R + +++ K + + E +K L ++HE RR+ + +E
Sbjct: 6 RIPEGPIDQGPAIGRVRVLEEQLVKAKEQIENYKKQTRNGLGKDHEILRRRIENGAKELW 65
Query: 255 ALMERQFLQQKQHLMRAREAALWEMEERQIHERQQHAKKQLKDGFFLQRHQMLIRHDKEL 314
++ + + K + E H + Q +KE
Sbjct: 66 FFLQSELKKLKNLEGNELQRHADEFLLDLGHHERSIMTDLYY---LSQTDGAGDWREKEA 122
Query: 315 EQLKRMNQRKIEEL 328
+ L + QR+I L
Sbjct: 123 KDLTELVQRRITYL 136
>2fpn_A YWMB; structural genomocs, domain swappin structural genomics, PSI,
protein structure initiative, MID center for structural
genomics, MCSG; 2.49A {Bacillus subtilis} SCOP:
d.129.10.1
Length = 216
Score = 27.5 bits (60), Expect = 6.0
Identities = 15/104 (14%), Positives = 33/104 (31%), Gaps = 1/104 (0%)
Query: 251 RENLALMERQFLQQKQHLMRAREAALWEMEERQIHERQQHAKKQLKDGFFLQRHQMLIRH 310
++NL+L E++F Q+ Q L + W + + K R Q++
Sbjct: 26 KQNLSLTEKEFYQKVQRLKQEYRQYDWVIARED-KMIKAIGTYTDKKNRTSFRLQLVTTL 84
Query: 311 DKELEQLKRMNQRKIEELTKKQTIEKRALPKRIRSEMKIREQMF 354
K + ++ E + + + +F
Sbjct: 85 KKHNPTSYLLYEQMSLETPDSWNDTYEQFERETLGIFQEKVVIF 128
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.127 0.332
Gapped
Lambda K H
0.267 0.0757 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,603,988
Number of extensions: 343190
Number of successful extensions: 1739
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1492
Number of HSP's successfully gapped: 323
Length of query: 392
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 297
Effective length of database: 4,049,298
Effective search space: 1202641506
Effective search space used: 1202641506
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.1 bits)