RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12208
         (392 letters)



>d1qusa_ d.2.1.6 (A:) 36 kDa soluble lytic transglycosylase, SLT35
           {Escherichia coli [TaxId: 562]}
          Length = 322

 Score = 28.6 bits (63), Expect = 1.4
 Identities = 10/90 (11%), Positives = 28/90 (31%), Gaps = 1/90 (1%)

Query: 282 RQIHERQQHAKKQLKDGF-FLQRHQMLIRHDKELEQLKRMNQRKIEELTKKQTIEKRALP 340
            ++  +    ++QL++     +R   ++R          +           +  +K   P
Sbjct: 26  DKMVNKHGFDRQQLQEILSQAKRLDSVLRLMDNQAPTTSVKPPSGPNGAWLRYRKKFITP 85

Query: 341 KRIRSEMKIREQMFRQSMRISSSSTPDPEV 370
             +++ +    Q      R        PE+
Sbjct: 86  DNVQNGVVFWNQYEDALNRAWQVYGVPPEI 115


>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS)
           {Methanococcus maripaludis [TaxId: 39152]}
          Length = 434

 Score = 26.4 bits (57), Expect = 6.8
 Identities = 6/43 (13%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 311 DKELEQLKRMNQRKIEELTKKQTIEKRALPKRIRSEMKIREQM 353
            K +E+   +   +  +  +      R +P+    + KI+  +
Sbjct: 11  PKNMEKRGELVLNEYLKEIE-DVFNHRKIPENGIDDEKIKLFL 52


>d1wgua_ b.55.1.2 (A:) Amyloid beta A4 precursor protein-binding
           family B member 2, Apbb2 {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 136

 Score = 25.4 bits (55), Expect = 8.7
 Identities = 10/28 (35%), Positives = 14/28 (50%)

Query: 361 SSSSTPDPEVEREKLKKVSVLGTIDVPS 388
           S SS P P+ E  +  +V  LG + V  
Sbjct: 3   SGSSGPTPKTELVQKFRVQYLGMLPVDR 30


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.127    0.332 

Gapped
Lambda     K      H
   0.267   0.0606    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,335,096
Number of extensions: 65425
Number of successful extensions: 400
Number of sequences better than 10.0: 1
Number of HSP's gapped: 360
Number of HSP's successfully gapped: 78
Length of query: 392
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 305
Effective length of database: 1,213,086
Effective search space: 369991230
Effective search space used: 369991230
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.8 bits)