BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1221
(690 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G85|A Chain A, Crystal Structure Of Human Hisrs
pdb|4G85|B Chain B, Crystal Structure Of Human Hisrs
Length = 517
Score = 204 bits (520), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 112/199 (56%), Positives = 131/199 (65%), Gaps = 28/199 (14%)
Query: 1 MVGEKNLSPEVADKIGEYVLKHGHVDLVENLLADEFLAKSKQAKEGLEAIKLLFHYCQIY 60
MVGEK L+PEVAD+IG+YV +HG V LVE LL D L+++KQA EGL +KLLF Y ++
Sbjct: 264 MVGEKGLAPEVADRIGDYVQQHGGVSLVEQLLQDPKLSQNKQALEGLGDLKLLFEYLTLF 323
Query: 61 GLKDTIVFDLSLARGLDYYTGVIYEAVLKDQ---------AVGSVAGGGRYDNLVGMFDP 111
G+ D I FDLSLARGLDYYTGVIYEAVL VGSVA GGRYD LVGMFDP
Sbjct: 324 GIDDKISFDLSLARGLDYYTGVIYEAVLLQTPAQAGEEPLGVGSVAAGGRYDGLVGMFDP 383
Query: 112 KNKTTPCVAAKLLHEVQGLLETSCRSCREDIGVERLFSIIENRNAEQGVKVKTTSTQVYV 171
K + PCV GL IGVER+FSI+E R K++TT TQV V
Sbjct: 384 KGRKVPCV---------GL----------SIGVERIFSIVEQRLEALEEKIRTTETQVLV 424
Query: 172 ASAQKNLVEPRMQLCHELW 190
ASAQK L+E R++L ELW
Sbjct: 425 ASAQKKLLEERLKLVSELW 443
>pdb|4G84|A Chain A, Crystal Structure Of Human Hisrs
pdb|4G84|B Chain B, Crystal Structure Of Human Hisrs
Length = 464
Score = 204 bits (519), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 110/199 (55%), Positives = 129/199 (64%), Gaps = 28/199 (14%)
Query: 1 MVGEKNLSPEVADKIGEYVLKHGHVDLVENLLADEFLAKSKQAKEGLEAIKLLFHYCQIY 60
MVGEK L+PEVAD+IG+YV +HG V LVE LL D L+++KQA EGL +KLLF Y ++
Sbjct: 211 MVGEKGLAPEVADRIGDYVQQHGGVSLVEQLLQDPKLSQNKQALEGLGDLKLLFEYLTLF 270
Query: 61 GLKDTIVFDLSLARGLDYYTGVIYEAVLKDQ---------AVGSVAGGGRYDNLVGMFDP 111
G+ D I FDLSLARGLDYYTGVIYEAVL VGSVA GGRYD LVGMFDP
Sbjct: 271 GIDDKISFDLSLARGLDYYTGVIYEAVLLQTPAQAGEEPLGVGSVAAGGRYDGLVGMFDP 330
Query: 112 KNKTTPCVAAKLLHEVQGLLETSCRSCREDIGVERLFSIIENRNAEQGVKVKTTSTQVYV 171
K + PCV IGVER+FSI+E R K++TT TQV V
Sbjct: 331 KGRKVPCVGLS-------------------IGVERIFSIVEQRLEALEEKIRTTETQVLV 371
Query: 172 ASAQKNLVEPRMQLCHELW 190
ASAQK L+E R++L ELW
Sbjct: 372 ASAQKKLLEERLKLVSELW 390
>pdb|3HRI|A Chain A, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|B Chain B, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|C Chain C, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|D Chain D, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|E Chain E, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|F Chain F, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
Length = 456
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 5/121 (4%)
Query: 4 EKNLSPEVADKIGEYVLKHGHVDLVENLLA----DEFLAKSKQAKEGLEAIKLLFHYCQI 59
EK EV ++ L+ VD + + L+ DE + + E + ++ +
Sbjct: 218 EKLPREEVVAQLAAIGLESNVVDAITSTLSLKTIDEIAQRIGEEHEAVRELRDFITQIEA 277
Query: 60 YGLKDTIVFDLSLARGLDYYTGVIYEAVLKDQAVGSVAGGGRYDNLVGMFDPKNKTTPCV 119
YG D ++FD S+ RGL YYTG+++E +D ++ GGGRYDNL+ + PCV
Sbjct: 278 YGFGDWVIFDASVVRGLAYYTGIVFEGFDRDGNFRALCGGGRYDNLLTTYGSPT-AVPCV 336
Query: 120 A 120
Sbjct: 337 G 337
>pdb|3HRK|A Chain A, Histidyl-Trna Synthetase From Trypanosoma Cruzi
(Histidyl-Adenylate Complex)
pdb|3HRK|B Chain B, Histidyl-Trna Synthetase From Trypanosoma Cruzi
(Histidyl-Adenylate Complex)
pdb|3LC0|A Chain A, Histidyl-Trna Synthetase From Trypanosoma Cruzi (Histidine
Complex)
Length = 456
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 66/137 (48%), Gaps = 17/137 (12%)
Query: 4 EKNLSPEVADKIGEYVLKHGHVDLVENLLA----DEFLAKSKQAKEGLEAIKLLFHYCQI 59
EK EV ++ L+ VD + L+ DE + + E ++ ++ F +
Sbjct: 218 EKIPREEVEAQLAVLGLEPTVVDAITTTLSLKSIDEIAQRVGEEHEAVKELRQFFEQVEA 277
Query: 60 YGLKDTIVFDLSLARGLDYYTGVIYEAVLKDQAVGSVAGGGRYDNLVGMFDPKNKTTP-- 117
YG D ++FD S+ RGL YYTG+++E ++ ++ GGGRYDNL+ + TP
Sbjct: 278 YGYGDWVLFDASVVRGLAYYTGIVFEGFDREGKFRALCGGGRYDNLLTTY---GSPTPIP 334
Query: 118 --------CVAAKLLHE 126
CV +LL E
Sbjct: 335 CAGFGFGDCVIVELLQE 351
>pdb|3NET|A Chain A, Crystal Structure Of Histidyl-Trna Synthetase From Nostoc
Sp. Pcc 7120
pdb|3NET|B Chain B, Crystal Structure Of Histidyl-Trna Synthetase From Nostoc
Sp. Pcc 7120
Length = 465
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 64/110 (58%), Gaps = 4/110 (3%)
Query: 4 EKNLSPEVADKIGEYVLKHGHVDLVENLLA--DEFLAKSKQAKEGLEAIKLLFHYCQIYG 61
++ ++PE KI ++V G VD V + L + L +S+Q G+ ++ + + G
Sbjct: 228 KEGINPEQTQKIIDFVKIDGSVDDVLDKLKHLSQTLPESEQFNLGVSELETVITGVRNLG 287
Query: 62 LKDT-IVFDLSLARGLDYYTGVIYEAVL-KDQAVGSVAGGGRYDNLVGMF 109
+ D DL++ARGL+YYTG +YE L +A+GS+ GGRY+ LVG F
Sbjct: 288 VPDKRFCIDLAIARGLNYYTGTVYETTLIGHEALGSICSGGRYEELVGTF 337
>pdb|1WU7|A Chain A, Crystal Structure Of Histidyl-Trna Synthetase From
Thermoplasma Acidophilum
pdb|1WU7|B Chain B, Crystal Structure Of Histidyl-Trna Synthetase From
Thermoplasma Acidophilum
Length = 434
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 3/61 (4%)
Query: 60 YGLKDTIVFDLSLARGLDYYTGVIYEAVLKDQAVGSVAGGGRYDNLVGMFDPKNKTTPCV 119
YG+K+ + +D S+ RGL YYTG+++EA + ++ GGGRYDNL + ++ P V
Sbjct: 252 YGVKN-VRYDFSIVRGLSYYTGIVFEAYDRSGQFRAILGGGRYDNLASL--XSGESVPAV 308
Query: 120 A 120
Sbjct: 309 G 309
>pdb|3RAC|A Chain A, Crystal Strucutre Of Histidine--Trna Ligase Subunit From
Alicyclobacillus Acidocaldarius Subsp. Acidocaldarius
Dsm 446
Length = 373
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 3/47 (6%)
Query: 64 DTIVFDLSLARGLDYYTGVIYEAVLKDQAVGS-VAGGGRYDNLVGMF 109
D + FDL+L R LDYYTG+++E + VG+ +A GGRYD L+ F
Sbjct: 299 DVVTFDLALHRELDYYTGLVFE--MFAPGVGAPIAQGGRYDELLAQF 343
>pdb|3OD1|A Chain A, The Crystal Structure Of An Atp Phosphoribosyltransferase
Regulatory SubunitHISTIDYL-Trna Synthetase From Bacillus
Halodurans C
pdb|3OD1|B Chain B, The Crystal Structure Of An Atp Phosphoribosyltransferase
Regulatory SubunitHISTIDYL-Trna Synthetase From Bacillus
Halodurans C
Length = 400
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 37 LAKSKQAKEGLEAIKLLFHYCQIYGLKDTIVFDLSLARGLDYYTGVIYEAVLKDQAVGSV 96
L ++++ K L L+ + YG + + FDL+L YYTGV++E V +
Sbjct: 236 LIQTEKGKTALAEXTKLYEVLESYGASEYVKFDLTLVLHXSYYTGVVFEGYGNRLGV-PL 294
Query: 97 AGGGRYDNLVGMFD-PKNKTTPCVAAKLLHEV 127
GGRYD L+ F P T V LL E
Sbjct: 295 CSGGRYDELLSKFHRPAQATGFGVRIDLLVEA 326
>pdb|1QE0|A Chain A, Crystal Structure Of Apo S. Aureus Histidyl-Trna
Synthetase
pdb|1QE0|B Chain B, Crystal Structure Of Apo S. Aureus Histidyl-Trna
Synthetase
Length = 420
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
Query: 69 DLSLARGLDYYTGVIYEAVLK----DQAVGSVAGGGRYDNLVGMFDPKNKT 115
D +L RGLDYYT +E ++ D A+ ++ GGGRY+ L+ + D ++T
Sbjct: 252 DPNLVRGLDYYTHTAFELMMDNPNYDGAITTLCGGGRYNGLLELLDGPSET 302
>pdb|4A15|A Chain A, Crystal Structure Of An Xpd Dna Complex
Length = 620
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 84/187 (44%), Gaps = 32/187 (17%)
Query: 483 HIKYILLNPANHFTDIVQDARSIIVAGGTMEPVSEFKDQLFGSLGVPESRIHHFSCGHVI 542
+++ L+P+ ++++++++I ++G T++P + D +P +I G +
Sbjct: 358 YMQAACLDPSG-ILEVLKESKTIHMSG-TLDPFDFYSD--ITGFEIPFKKI-----GEIF 408
Query: 543 PKENILPLILCSGPTNRKFDLTFENRTKGDTLKEIAMTITNLCTIVPKGMVCFFPSYDYE 602
P EN I + K+D E L +A I ++ V K + +FPSY
Sbjct: 409 PPEN--RYIAYYDGVSSKYDTLDEKE-----LDRMATVIEDIILKVKKNTIVYFPSYSLM 461
Query: 603 AIVYNYMRDNHFIERIARIAKKKVVFREPKKTSEVDKVLSDYGTSVEKGGALMLSVIGGK 662
V N + H E R +K ++ S + K D+GT + +V GG+
Sbjct: 462 DRVENRVSFEHMKE--YRGIDQKELY------SMLKKFRRDHGT--------IFAVSGGR 505
Query: 663 LSEGLNF 669
LSEG+NF
Sbjct: 506 LSEGINF 512
>pdb|2VSF|A Chain A, Structure Of Xpd From Thermoplasma Acidophilum
Length = 602
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 84/187 (44%), Gaps = 32/187 (17%)
Query: 483 HIKYILLNPANHFTDIVQDARSIIVAGGTMEPVSEFKDQLFGSLGVPESRIHHFSCGHVI 542
+++ L+P+ ++++++++I ++G T++P + D +P +I G +
Sbjct: 340 YMQAACLDPSG-ILEVLKESKTIHMSG-TLDPFDFYSD--ITGFEIPFKKI-----GEIF 390
Query: 543 PKENILPLILCSGPTNRKFDLTFENRTKGDTLKEIAMTITNLCTIVPKGMVCFFPSYDYE 602
P EN I + K+D E L +A I ++ V K + +FPSY
Sbjct: 391 PPEN--RYIAYYDGVSSKYDTLDEKE-----LDRMATVIEDIILKVKKNTIVYFPSYSLM 443
Query: 603 AIVYNYMRDNHFIERIARIAKKKVVFREPKKTSEVDKVLSDYGTSVEKGGALMLSVIGGK 662
V N + H E R +K ++ S + K D+GT + +V GG+
Sbjct: 444 DRVENRVSFEHMKE--YRGIDQKELY------SMLKKFRRDHGT--------IFAVSGGR 487
Query: 663 LSEGLNF 669
LSEG+NF
Sbjct: 488 LSEGINF 494
>pdb|4E51|A Chain A, Crystal Structure Of A Histidyl-Trna Synthetase Hisrs From
Burkholderia Thailandensis Bound To Histidine
pdb|4E51|B Chain B, Crystal Structure Of A Histidyl-Trna Synthetase Hisrs From
Burkholderia Thailandensis Bound To Histidine
Length = 467
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 72 LARGLDYYTGVIYEAVL-KDQAVGSVAGGGRYDNLVGMFDPKNKTTPCVAAKLLHEVQGL 130
L RGLDYY ++E V K A G+VA GGRYD L+ K T C A + + L
Sbjct: 284 LVRGLDYYNLTVFEWVTDKLGAQGTVAAGGRYDPLIEQLGGK-PTAACGWAMGIERILEL 342
Query: 131 LE 132
L+
Sbjct: 343 LK 344
>pdb|1KMM|A Chain A, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate
pdb|1KMM|B Chain B, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate
pdb|1KMM|C Chain C, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate
pdb|1KMM|D Chain D, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate
pdb|1KMN|A Chain A, Histidyl-Trna Synthetase Complexed With Histidinol And Atp
pdb|1KMN|B Chain B, Histidyl-Trna Synthetase Complexed With Histidinol And Atp
pdb|1KMN|C Chain C, Histidyl-Trna Synthetase Complexed With Histidinol And Atp
pdb|1KMN|D Chain D, Histidyl-Trna Synthetase Complexed With Histidinol And Atp
Length = 424
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 72 LARGLDYYTGVIYEAVLKD-QAVGSVAGGGRYDNLVGMFDPKNKTTPCVA 120
L RGLDYY ++E V + G+V GGRYD LV + TP V
Sbjct: 257 LVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLG--GRATPAVG 304
>pdb|1HTT|A Chain A, Histidyl-Trna Synthetase
pdb|1HTT|B Chain B, Histidyl-Trna Synthetase
pdb|1HTT|C Chain C, Histidyl-Trna Synthetase
pdb|1HTT|D Chain D, Histidyl-Trna Synthetase
Length = 423
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 72 LARGLDYYTGVIYEAVLKD-QAVGSVAGGGRYDNLVGMFDPKNKTTPCVA 120
L RGLDYY ++E V + G+V GGRYD LV + TP V
Sbjct: 256 LVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLG--GRATPAVG 303
>pdb|2EL9|A Chain A, Crystal Structure Of E.Coli Histidyl-Trna Synthetase
Complexed With A Histidyl-Adenylate Analogue
pdb|2EL9|B Chain B, Crystal Structure Of E.Coli Histidyl-Trna Synthetase
Complexed With A Histidyl-Adenylate Analogue
pdb|2EL9|C Chain C, Crystal Structure Of E.Coli Histidyl-Trna Synthetase
Complexed With A Histidyl-Adenylate Analogue
pdb|2EL9|D Chain D, Crystal Structure Of E.Coli Histidyl-Trna Synthetase
Complexed With A Histidyl-Adenylate Analogue
Length = 431
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 72 LARGLDYYTGVIYEAVLKD-QAVGSVAGGGRYDNLVGMFDPKNKTTPCVA 120
L RGLDYY ++E V + G+V GGRYD LV + TP V
Sbjct: 264 LVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLG--GRATPAVG 311
>pdb|1Z7M|A Chain A, Atp Phosphoribosyl Transferase (hiszg Atp-prtase) From
Lactococcus Lactis
pdb|1Z7M|B Chain B, Atp Phosphoribosyl Transferase (hiszg Atp-prtase) From
Lactococcus Lactis
pdb|1Z7M|C Chain C, Atp Phosphoribosyl Transferase (hiszg Atp-prtase) From
Lactococcus Lactis
pdb|1Z7M|D Chain D, Atp Phosphoribosyl Transferase (hiszg Atp-prtase) From
Lactococcus Lactis
pdb|1Z7N|A Chain A, Atp Phosphoribosyl Transferase (Hiszg Atp-Prtase) From
Lactococcus Lactis With Bound Prpp Substrate
pdb|1Z7N|B Chain B, Atp Phosphoribosyl Transferase (Hiszg Atp-Prtase) From
Lactococcus Lactis With Bound Prpp Substrate
pdb|1Z7N|C Chain C, Atp Phosphoribosyl Transferase (Hiszg Atp-Prtase) From
Lactococcus Lactis With Bound Prpp Substrate
pdb|1Z7N|D Chain D, Atp Phosphoribosyl Transferase (Hiszg Atp-Prtase) From
Lactococcus Lactis With Bound Prpp Substrate
Length = 344
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 11/84 (13%)
Query: 26 DLVENLLADEFLAKSKQAKEGLEAIKLLFHYCQIYGLKDTIVFDLSLARGLDYYTGVIYE 85
+LV N D ++ Q KE E + ++ I+ DL + +DYYT ++++
Sbjct: 242 NLVTNTKDDVLISSFDQLKEFSEKLSMI----------KPIIIDLGMVPKMDYYTDLMFK 291
Query: 86 AVLKDQAVGSVAGGGRYDNLVGMF 109
A A + GGRYD L+ F
Sbjct: 292 AY-SSAANQPILSGGRYDQLLSNF 314
>pdb|1ADJ|A Chain A, Histidyl-Trna Synthetase In Complex With Histidine
pdb|1ADJ|B Chain B, Histidyl-Trna Synthetase In Complex With Histidine
pdb|1ADJ|C Chain C, Histidyl-Trna Synthetase In Complex With Histidine
pdb|1ADJ|D Chain D, Histidyl-Trna Synthetase In Complex With Histidine
pdb|1ADY|A Chain A, Histidyl-Trna Synthetase In Complex With
Histidyl-Adenylate
pdb|1ADY|B Chain B, Histidyl-Trna Synthetase In Complex With
Histidyl-Adenylate
pdb|1ADY|C Chain C, Histidyl-Trna Synthetase In Complex With
Histidyl-Adenylate
pdb|1ADY|D Chain D, Histidyl-Trna Synthetase In Complex With
Histidyl-Adenylate
pdb|1H4V|B Chain B, Histidyl-Trna Synthetase From Thermus Thermophilus (Ligand
Free)
Length = 421
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 71 SLARGLDYYTGVIYEAVLKD-QAVGSVAGGGRYDNL 105
+L RGLDYY +E ++ A ++ GGGRYD L
Sbjct: 256 ALVRGLDYYVRTAFEVHHEEIGAQSALGGGGRYDGL 291
>pdb|3QX3|A Chain A, Human Topoisomerase Iibeta In Complex With Dna And
Etoposide
pdb|3QX3|B Chain B, Human Topoisomerase Iibeta In Complex With Dna And
Etoposide
Length = 803
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 40/101 (39%), Gaps = 13/101 (12%)
Query: 367 IAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYMPDIEKTQEKPKLSGLQSFLKGVQENNP 426
I M + N + G C P+YD IV N ++ P L ++F +QE
Sbjct: 443 IPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLDPHPMLPNYKNFKGTIQELGQ 502
Query: 427 NLSKPS---------EGGIEEAP----SQVQEDQVRNPMLS 454
N S I E P +QV ++QV PML+
Sbjct: 503 NQYAVSGEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLN 543
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,330,380
Number of Sequences: 62578
Number of extensions: 912601
Number of successful extensions: 2258
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2223
Number of HSP's gapped (non-prelim): 29
length of query: 690
length of database: 14,973,337
effective HSP length: 106
effective length of query: 584
effective length of database: 8,340,069
effective search space: 4870600296
effective search space used: 4870600296
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)