Query psy1221
Match_columns 690
No_of_seqs 516 out of 3541
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 21:38:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1221.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1221hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1133|consensus 100.0 1.1E-43 2.3E-48 385.5 24.3 229 450-689 496-725 (821)
2 TIGR00604 rad3 DNA repair heli 100.0 1.5E-37 3.4E-42 363.9 25.3 230 450-689 390-620 (705)
3 KOG1132|consensus 100.0 9.4E-33 2E-37 308.2 19.1 199 482-689 459-661 (945)
4 KOG1133|consensus 100.0 1.1E-31 2.4E-36 292.2 20.5 225 240-513 496-721 (821)
5 KOG1936|consensus 100.0 1.4E-30 3E-35 269.7 17.7 197 1-216 257-473 (518)
6 KOG1131|consensus 100.0 1.3E-28 2.8E-33 260.0 15.5 228 449-686 392-625 (755)
7 PRK11747 dinG ATP-dependent DN 100.0 1.6E-27 3.5E-32 277.6 22.0 197 469-689 419-621 (697)
8 PRK08074 bifunctional ATP-depe 100.0 4.9E-27 1.1E-31 281.7 23.5 204 466-689 632-840 (928)
9 PLN02972 Histidyl-tRNA synthet 99.9 3.8E-27 8.3E-32 268.1 18.7 194 3-217 524-719 (763)
10 COG0124 HisS Histidyl-tRNA syn 99.9 2.1E-26 4.6E-31 249.4 16.0 182 8-218 205-388 (429)
11 TIGR00604 rad3 DNA repair heli 99.9 5E-25 1.1E-29 258.6 21.2 225 241-513 391-616 (705)
12 COG1199 DinG Rad3-related DNA 99.9 7.7E-25 1.7E-29 256.3 20.9 214 450-689 345-564 (654)
13 TIGR01407 dinG_rel DnaQ family 99.9 1.3E-24 2.9E-29 259.6 22.1 196 469-689 558-761 (850)
14 KOG1132|consensus 99.9 1.5E-24 3.3E-29 242.8 16.9 201 272-517 459-661 (945)
15 PLN02530 histidine-tRNA ligase 99.9 2.4E-23 5.2E-28 233.8 17.9 180 4-216 272-452 (487)
16 TIGR03117 cas_csf4 CRISPR-asso 99.9 6.6E-23 1.4E-27 232.5 21.3 201 469-689 338-566 (636)
17 PRK12420 histidyl-tRNA synthet 99.9 4.8E-23 1E-27 228.3 18.5 182 4-216 204-388 (423)
18 PRK12292 hisZ ATP phosphoribos 99.9 9.3E-23 2E-27 223.5 17.4 177 6-216 201-378 (391)
19 PRK07246 bifunctional ATP-depe 99.9 3E-22 6.5E-27 236.6 20.1 185 471-689 540-730 (820)
20 KOG1131|consensus 99.9 2.8E-23 6E-28 219.9 9.3 244 240-531 393-647 (755)
21 PRK12421 ATP phosphoribosyltra 99.9 8.9E-22 1.9E-26 215.1 15.5 156 4-195 204-359 (392)
22 PRK12295 hisZ ATP phosphoribos 99.9 5.1E-21 1.1E-25 207.1 14.4 124 6-150 245-370 (373)
23 CHL00201 syh histidine-tRNA sy 99.8 9.5E-21 2.1E-25 209.9 16.7 147 43-217 229-377 (430)
24 PF13307 Helicase_C_2: Helicas 99.8 2.7E-21 5.8E-26 187.2 8.7 97 581-689 1-97 (167)
25 TIGR00442 hisS histidyl-tRNA s 99.8 2E-20 4.4E-25 206.1 16.7 147 44-216 225-373 (397)
26 TIGR00443 hisZ_biosyn_reg ATP 99.8 1.1E-20 2.4E-25 201.4 13.4 125 3-152 189-313 (314)
27 PRK00037 hisS histidyl-tRNA sy 99.8 4.1E-19 8.9E-24 196.8 13.4 142 44-216 226-369 (412)
28 PF13393 tRNA-synt_His: Histid 99.8 2.8E-19 6.1E-24 190.7 9.7 119 4-147 192-311 (311)
29 smart00491 HELICc2 helicase su 99.8 2.1E-18 4.5E-23 161.8 9.3 85 599-689 1-85 (142)
30 cd00773 HisRS-like_core Class 99.7 7.9E-18 1.7E-22 175.0 11.9 86 45-151 174-260 (261)
31 smart00492 HELICc3 helicase su 99.7 2E-16 4.4E-21 148.1 9.3 84 599-689 1-84 (141)
32 PRK12293 hisZ ATP phosphoribos 99.6 4.3E-15 9.2E-20 155.3 12.0 100 13-152 181-280 (281)
33 PRK08074 bifunctional ATP-depe 99.5 2E-13 4.4E-18 164.6 15.2 135 254-399 630-772 (928)
34 COG3705 HisZ ATP phosphoribosy 99.5 1.1E-13 2.3E-18 147.9 9.2 153 5-192 199-351 (390)
35 TIGR01407 dinG_rel DnaQ family 99.5 6.5E-13 1.4E-17 159.5 15.9 131 258-400 557-695 (850)
36 PRK11747 dinG ATP-dependent DN 99.4 8E-13 1.7E-17 154.8 15.5 127 259-399 419-554 (697)
37 PRK12294 hisZ ATP phosphoribos 99.4 1.6E-13 3.5E-18 142.1 7.3 68 42-111 201-268 (272)
38 COG1199 DinG Rad3-related DNA 99.4 4.2E-12 9.2E-17 149.1 15.8 134 255-400 365-500 (654)
39 PRK07246 bifunctional ATP-depe 99.1 1.8E-09 3.8E-14 128.6 15.9 124 261-400 540-668 (820)
40 TIGR00418 thrS threonyl-tRNA s 99.0 9.5E-10 2.1E-14 126.9 10.4 146 48-218 367-523 (563)
41 KOG1035|consensus 99.0 2.4E-09 5.3E-14 125.5 12.8 148 27-197 1138-1290(1351)
42 TIGR03117 cas_csf4 CRISPR-asso 98.8 4.2E-08 9.1E-13 112.5 15.1 131 259-399 338-490 (636)
43 PRK12444 threonyl-tRNA synthet 98.5 2.2E-07 4.8E-12 108.8 9.9 142 51-218 441-595 (639)
44 PRK04173 glycyl-tRNA synthetas 98.0 1.1E-05 2.3E-10 90.4 8.5 158 50-218 234-416 (456)
45 cd00079 HELICc Helicase superf 97.7 0.00041 8.9E-09 63.2 11.5 97 572-686 12-109 (131)
46 PRK11192 ATP-dependent RNA hel 97.5 0.003 6.6E-08 70.7 16.4 90 579-685 234-325 (434)
47 PRK11776 ATP-dependent RNA hel 97.3 0.0055 1.2E-07 69.2 16.1 82 587-685 240-322 (460)
48 PRK04537 ATP-dependent RNA hel 97.2 0.0078 1.7E-07 69.7 16.6 82 588-686 256-338 (572)
49 TIGR01970 DEAH_box_HrpB ATP-de 97.2 0.0051 1.1E-07 73.7 15.2 97 573-684 193-291 (819)
50 PRK12305 thrS threonyl-tRNA sy 97.2 0.0013 2.9E-08 76.3 9.5 143 51-218 376-529 (575)
51 PRK04837 ATP-dependent RNA hel 97.2 0.011 2.3E-07 66.1 16.3 82 588-686 254-336 (423)
52 PRK10590 ATP-dependent RNA hel 97.1 0.012 2.5E-07 66.5 16.6 80 589-685 245-325 (456)
53 TIGR00614 recQ_fam ATP-depende 97.1 0.008 1.7E-07 68.1 15.3 82 587-685 223-306 (470)
54 PTZ00110 helicase; Provisional 97.1 0.011 2.3E-07 68.3 16.1 93 575-685 364-457 (545)
55 PRK13767 ATP-dependent helicas 97.1 0.016 3.6E-07 70.4 17.7 101 573-685 269-370 (876)
56 PRK11664 ATP-dependent RNA hel 97.0 0.0055 1.2E-07 73.5 13.3 96 574-683 197-293 (812)
57 PLN00206 DEAD-box ATP-dependen 96.9 0.019 4E-07 65.9 15.5 81 589-685 367-448 (518)
58 TIGR01389 recQ ATP-dependent D 96.8 0.021 4.5E-07 66.7 15.5 140 503-684 163-303 (591)
59 PRK11057 ATP-dependent DNA hel 96.8 0.021 4.5E-07 66.8 15.5 82 587-685 234-316 (607)
60 PRK01297 ATP-dependent RNA hel 96.8 0.025 5.4E-07 64.2 15.7 80 589-685 335-415 (475)
61 PF13307 Helicase_C_2: Helicas 96.8 0.0011 2.3E-08 64.2 3.4 30 371-400 1-30 (167)
62 PTZ00424 helicase 45; Provisio 96.7 0.043 9.4E-07 60.6 16.2 81 588-685 266-347 (401)
63 TIGR03817 DECH_helic helicase/ 96.7 0.033 7.2E-07 66.5 16.0 101 576-685 259-359 (742)
64 PRK11634 ATP-dependent RNA hel 96.7 0.043 9.2E-07 64.3 16.3 81 588-685 244-325 (629)
65 PHA02653 RNA helicase NPH-II; 96.6 0.046 1E-06 64.1 15.7 93 577-684 383-475 (675)
66 PRK09401 reverse gyrase; Revie 96.4 0.032 6.8E-07 69.5 13.6 85 582-684 321-410 (1176)
67 PLN03137 ATP-dependent DNA hel 96.1 0.082 1.8E-06 64.4 14.4 141 503-685 617-760 (1195)
68 PRK11131 ATP-dependent RNA hel 96.1 0.069 1.5E-06 66.3 13.9 146 502-682 218-364 (1294)
69 TIGR00580 mfd transcription-re 96.0 0.13 2.7E-06 62.7 15.7 82 588-684 659-741 (926)
70 PRK10917 ATP-dependent DNA hel 96.0 0.15 3.3E-06 60.4 16.1 89 579-683 462-559 (681)
71 TIGR01967 DEAH_box_HrpA ATP-de 95.9 0.069 1.5E-06 66.4 13.3 154 495-683 202-358 (1283)
72 TIGR01054 rgy reverse gyrase. 95.8 0.12 2.6E-06 64.6 14.9 85 583-684 320-409 (1171)
73 PRK01172 ski2-like helicase; P 95.6 0.25 5.4E-06 58.7 16.0 89 588-684 235-339 (674)
74 PRK14701 reverse gyrase; Provi 95.4 0.18 3.9E-06 64.7 14.4 86 581-684 322-412 (1638)
75 TIGR01587 cas3_core CRISPR-ass 95.2 0.35 7.6E-06 52.5 14.4 70 588-670 221-295 (358)
76 KOG0343|consensus 95.2 0.59 1.3E-05 52.3 15.5 80 588-683 312-393 (758)
77 TIGR00643 recG ATP-dependent D 95.1 0.43 9.3E-06 56.2 15.6 80 589-683 448-536 (630)
78 PRK00413 thrS threonyl-tRNA sy 95.1 0.077 1.7E-06 62.6 9.4 142 50-218 438-592 (638)
79 TIGR03158 cas3_cyano CRISPR-as 95.1 0.39 8.5E-06 52.4 14.2 83 571-672 253-337 (357)
80 KOG0345|consensus 95.0 0.088 1.9E-06 57.5 8.5 87 579-681 245-333 (567)
81 PRK10689 transcription-repair 95.0 0.31 6.7E-06 60.8 14.4 77 589-680 809-886 (1147)
82 PRK12898 secA preprotein trans 94.8 0.37 8E-06 56.2 13.6 153 493-684 399-558 (656)
83 smart00490 HELICc helicase sup 94.8 0.1 2.2E-06 42.9 6.8 54 626-686 14-68 (82)
84 TIGR02621 cas3_GSU0051 CRISPR- 94.8 0.43 9.2E-06 57.1 14.1 83 576-672 259-355 (844)
85 PRK09751 putative ATP-dependen 94.7 0.71 1.5E-05 58.7 16.6 91 589-686 244-358 (1490)
86 PHA02558 uvsW UvsW helicase; P 94.7 0.26 5.7E-06 56.3 11.9 81 587-683 342-423 (501)
87 COG0513 SrmB Superfamily II DN 94.7 0.69 1.5E-05 53.0 15.3 89 579-684 262-352 (513)
88 KOG0342|consensus 94.6 0.3 6.5E-06 53.8 11.4 77 590-683 331-408 (543)
89 KOG0332|consensus 94.1 0.92 2E-05 48.5 13.4 143 500-684 262-409 (477)
90 PRK02362 ski2-like helicase; P 94.1 1.1 2.4E-05 53.8 16.0 86 588-681 242-354 (737)
91 PF12745 HGTP_anticodon2: Anti 94.0 0.063 1.4E-06 56.0 4.6 57 162-218 1-60 (273)
92 PRK00254 ski2-like helicase; P 93.6 1.5 3.2E-05 52.6 15.8 96 577-681 227-346 (720)
93 KOG0333|consensus 93.5 1.3 2.8E-05 49.5 13.5 81 574-672 505-586 (673)
94 PF00271 Helicase_C: Helicase 93.1 0.25 5.4E-06 40.7 6.0 53 626-685 10-63 (78)
95 KOG0347|consensus 92.5 0.28 6.1E-06 54.7 6.8 80 587-683 461-541 (731)
96 KOG0328|consensus 92.5 1.8 3.9E-05 44.7 12.0 77 590-683 267-344 (400)
97 COG1110 Reverse gyrase [DNA re 92.1 0.8 1.7E-05 54.8 10.2 87 579-683 325-416 (1187)
98 TIGR00963 secA preprotein tran 91.8 2.6 5.7E-05 49.8 14.1 154 493-685 331-490 (745)
99 TIGR00631 uvrb excinuclease AB 90.8 1.5 3.2E-05 51.8 10.9 89 574-680 428-517 (655)
100 KOG0331|consensus 90.7 1.6 3.4E-05 49.4 10.4 96 571-683 323-419 (519)
101 PRK09200 preprotein translocas 90.4 4.2 9E-05 48.8 14.1 95 572-684 412-513 (790)
102 PRK13766 Hef nuclease; Provisi 90.2 1.7 3.6E-05 52.6 11.1 93 574-683 349-451 (773)
103 TIGR00603 rad25 DNA repair hel 90.2 1.5 3.3E-05 51.9 10.2 80 586-686 493-573 (732)
104 KOG0348|consensus 89.1 2.4 5.3E-05 47.4 10.0 106 574-686 409-528 (708)
105 PRK11448 hsdR type I restricti 88.9 2.9 6.2E-05 52.3 11.8 102 574-683 682-784 (1123)
106 COG4098 comFA Superfamily II D 88.9 8.6 0.00019 41.1 13.3 81 576-671 293-373 (441)
107 PRK05298 excinuclease ABC subu 88.7 2.9 6.3E-05 49.4 11.2 92 574-683 432-524 (652)
108 PRK04914 ATP-dependent helicas 88.7 2.2 4.9E-05 52.2 10.4 84 589-686 493-577 (956)
109 PRK12900 secA preprotein trans 88.2 5.9 0.00013 48.1 13.2 99 571-686 581-683 (1025)
110 COG1643 HrpA HrpA-like helicas 87.8 5.6 0.00012 48.0 12.8 84 503-611 196-281 (845)
111 PRK09694 helicase Cas3; Provis 87.4 12 0.00026 45.7 15.3 74 588-670 559-638 (878)
112 PRK14799 thrS threonyl-tRNA sy 87.4 0.83 1.8E-05 52.5 5.4 79 139-218 412-491 (545)
113 PF06862 DUF1253: Protein of u 86.9 10 0.00023 42.3 13.4 85 586-684 297-381 (442)
114 COG1061 SSL2 DNA or RNA helica 86.7 4.6 0.0001 45.4 10.9 75 589-681 283-358 (442)
115 KOG0341|consensus 86.5 2.1 4.5E-05 46.0 7.2 82 581-679 413-495 (610)
116 PRK12906 secA preprotein trans 86.3 12 0.00025 45.0 14.1 98 571-685 423-526 (796)
117 KOG0339|consensus 85.7 8.5 0.00018 43.0 11.6 90 571-679 452-542 (731)
118 PRK12904 preprotein translocas 84.2 16 0.00035 44.0 14.1 85 571-672 413-497 (830)
119 KOG0327|consensus 84.0 9.3 0.0002 41.3 10.7 87 579-683 254-341 (397)
120 PRK12325 prolyl-tRNA synthetas 83.9 1.9 4.1E-05 48.5 6.0 79 140-218 316-401 (439)
121 COG1204 Superfamily II helicas 83.8 9.9 0.00021 45.7 12.2 95 503-611 181-275 (766)
122 KOG0330|consensus 83.1 20 0.00043 39.0 12.7 85 583-684 293-379 (476)
123 KOG0344|consensus 82.8 7 0.00015 44.4 9.7 81 588-683 386-466 (593)
124 COG1205 Distinct helicase fami 81.3 12 0.00026 45.6 11.8 170 491-684 215-393 (851)
125 KOG0926|consensus 80.1 5.3 0.00011 46.9 7.7 54 560-613 451-505 (1172)
126 TIGR03714 secA2 accessory Sec 80.0 38 0.00083 40.6 15.0 82 572-670 408-489 (762)
127 PLN02908 threonyl-tRNA synthet 79.2 2.7 5.9E-05 50.0 5.4 74 143-217 567-641 (686)
128 cd00858 GlyRS_anticodon GlyRS 78.8 2.8 6E-05 38.0 4.2 56 162-218 22-80 (121)
129 TIGR01967 DEAH_box_HrpA ATP-de 78.5 5.5 0.00012 50.2 7.9 39 362-400 262-300 (1283)
130 cd00860 ThrRS_anticodon ThrRS 78.3 2.9 6.2E-05 35.3 3.9 51 167-217 2-53 (91)
131 KOG0922|consensus 78.2 12 0.00027 43.2 9.8 93 495-612 186-281 (674)
132 PRK11131 ATP-dependent RNA hel 78.0 5.9 0.00013 49.9 7.9 40 361-400 268-307 (1294)
133 PRK13104 secA preprotein trans 77.7 18 0.00039 43.8 11.5 83 571-670 427-509 (896)
134 cd00670 Gly_His_Pro_Ser_Thr_tR 77.5 9.5 0.00021 38.5 8.2 84 54-151 140-234 (235)
135 PRK03991 threonyl-tRNA synthet 77.1 15 0.00033 43.0 10.6 76 142-217 467-551 (613)
136 KOG0926|consensus 76.9 4.5 9.8E-05 47.5 6.0 49 351-399 452-501 (1172)
137 KOG0336|consensus 75.9 18 0.00039 39.4 9.7 76 588-679 464-539 (629)
138 KOG0337|consensus 75.3 25 0.00053 38.7 10.6 69 589-671 261-329 (529)
139 KOG0335|consensus 75.3 31 0.00067 38.8 11.7 78 591-684 339-416 (482)
140 PRK09194 prolyl-tRNA synthetas 74.9 5.1 0.00011 46.5 6.0 79 140-218 439-524 (565)
141 PRK11664 ATP-dependent RNA hel 74.5 7.7 0.00017 47.0 7.5 36 365-400 198-233 (812)
142 TIGR01970 DEAH_box_HrpB ATP-de 74.0 11 0.00023 45.8 8.5 37 364-400 194-230 (819)
143 KOG0952|consensus 72.5 63 0.0014 39.7 13.9 157 502-686 275-452 (1230)
144 TIGR00389 glyS_dimeric glycyl- 70.9 7.3 0.00016 44.8 5.8 82 136-218 416-511 (551)
145 cd00738 HGTP_anticodon HGTP an 70.6 6.6 0.00014 33.2 4.3 51 167-217 2-56 (94)
146 PLN03142 Probable chromatin-re 70.5 20 0.00043 44.5 9.8 86 587-686 485-571 (1033)
147 KOG4150|consensus 70.2 35 0.00076 38.8 10.5 145 504-685 453-613 (1034)
148 PHA02653 RNA helicase NPH-II; 69.6 30 0.00064 41.1 10.7 34 367-400 383-416 (675)
149 TIGR00595 priA primosomal prot 69.0 84 0.0018 36.0 14.0 40 636-682 300-339 (505)
150 PRK13107 preprotein translocas 67.2 36 0.00078 41.3 10.6 83 571-670 432-514 (908)
151 KOG0334|consensus 66.9 39 0.00083 41.2 10.7 137 501-673 545-683 (997)
152 cd00859 HisRS_anticodon HisRS 66.2 7.6 0.00016 32.2 3.7 49 167-215 2-51 (91)
153 PF03129 HGTP_anticodon: Antic 63.9 7.5 0.00016 33.1 3.3 51 168-218 1-55 (94)
154 COG1111 MPH1 ERCC4-like helica 63.4 45 0.00097 37.6 9.7 86 574-672 350-444 (542)
155 PRK14938 Ser-tRNA(Thr) hydrola 62.3 11 0.00025 41.0 4.9 81 138-218 243-327 (387)
156 COG1643 HrpA HrpA-like helicas 62.3 25 0.00054 42.6 8.2 91 285-400 185-280 (845)
157 COG0556 UvrB Helicase subunit 62.2 2.2E+02 0.0047 32.7 14.7 87 572-674 430-517 (663)
158 COG0514 RecQ Superfamily II DN 59.9 54 0.0012 38.0 10.0 139 504-684 168-309 (590)
159 KOG0338|consensus 59.7 89 0.0019 35.4 11.1 79 589-683 426-504 (691)
160 TIGR03158 cas3_cyano CRISPR-as 57.2 44 0.00096 36.4 8.6 39 361-399 253-292 (357)
161 KOG0920|consensus 55.8 22 0.00048 43.2 6.3 39 575-613 398-437 (924)
162 PRK06462 asparagine synthetase 54.6 15 0.00034 39.6 4.4 63 83-154 247-317 (335)
163 TIGR00408 proS_fam_I prolyl-tR 54.4 15 0.00033 41.6 4.5 80 139-218 251-341 (472)
164 PF15640 Tox-MPTase4: Metallop 53.3 21 0.00045 32.4 4.2 37 45-83 19-62 (132)
165 KOG0340|consensus 52.9 1.5E+02 0.0033 32.1 11.1 88 580-684 244-333 (442)
166 PLN02837 threonine-tRNA ligase 52.0 22 0.00047 41.9 5.4 73 143-217 494-567 (614)
167 COG3705 HisZ ATP phosphoribosy 49.3 2.1 4.6E-05 46.8 -3.2 63 64-150 322-384 (390)
168 KOG0925|consensus 48.7 1.2E+02 0.0026 34.2 9.9 83 503-611 192-275 (699)
169 KOG2340|consensus 47.3 48 0.001 37.6 6.7 96 575-684 538-633 (698)
170 COG1202 Superfamily II helicas 46.9 2.2E+02 0.0048 33.0 11.7 135 503-673 373-510 (830)
171 KOG0351|consensus 46.8 3.3E+02 0.0072 33.8 14.3 140 503-683 421-563 (941)
172 COG1201 Lhr Lhr-like helicases 46.5 5.1E+02 0.011 31.6 15.5 146 504-683 185-332 (814)
173 KOG4284|consensus 46.1 86 0.0019 36.6 8.5 93 572-681 254-348 (980)
174 TIGR00470 sepS O-phosphoseryl- 45.8 1.2E+02 0.0026 34.2 9.4 84 46-152 244-332 (533)
175 KOG0923|consensus 45.3 73 0.0016 37.2 7.8 84 503-611 411-495 (902)
176 KOG0922|consensus 45.1 56 0.0012 38.0 7.0 49 351-399 229-278 (674)
177 KOG0326|consensus 43.7 58 0.0013 34.6 6.3 67 590-671 323-390 (459)
178 cd00861 ProRS_anticodon_short 43.2 21 0.00046 30.1 2.7 52 167-218 2-57 (94)
179 cd00776 AsxRS_core Asx tRNA sy 42.2 29 0.00063 37.3 4.1 79 66-154 214-308 (322)
180 PF00152 tRNA-synt_2: tRNA syn 41.4 32 0.00069 37.1 4.3 70 81-154 247-321 (335)
181 PRK05159 aspC aspartyl-tRNA sy 40.3 32 0.0007 38.6 4.3 62 82-154 350-419 (437)
182 KOG0924|consensus 39.8 1E+02 0.0022 36.2 7.9 85 502-611 500-585 (1042)
183 COG1203 CRISPR-associated heli 39.5 1.5E+02 0.0032 35.8 9.9 72 589-672 440-513 (733)
184 KOG0920|consensus 39.2 25 0.00055 42.7 3.3 36 365-400 398-434 (924)
185 TIGR00458 aspS_arch aspartyl-t 38.5 38 0.00082 38.0 4.4 77 66-153 317-409 (428)
186 PRK08661 prolyl-tRNA synthetas 33.9 67 0.0015 36.5 5.5 78 141-218 258-347 (477)
187 PLN02734 glycyl-tRNA synthetas 33.3 63 0.0014 38.2 5.2 83 136-218 530-625 (684)
188 TIGR02621 cas3_GSU0051 CRISPR- 32.7 2.3E+02 0.005 34.6 9.8 36 366-401 259-294 (844)
189 PRK11776 ATP-dependent RNA hel 30.9 2.4E+02 0.0051 31.7 9.4 23 377-399 240-262 (460)
190 smart00491 HELICc2 helicase su 30.5 50 0.0011 30.9 3.2 35 469-515 48-83 (142)
191 cd00669 Asp_Lys_Asn_RS_core As 30.2 68 0.0015 33.5 4.5 66 82-154 182-255 (269)
192 PLN02532 asparagine-tRNA synth 29.8 55 0.0012 38.3 4.0 63 82-154 545-615 (633)
193 PF01409 tRNA-synt_2d: tRNA sy 28.9 2.8E+02 0.006 28.6 8.6 81 48-152 140-228 (247)
194 PRK13767 ATP-dependent helicas 28.4 3.3E+02 0.0071 33.7 10.5 97 292-399 207-304 (876)
195 PTZ00425 asparagine-tRNA ligas 27.9 74 0.0016 37.0 4.6 62 82-153 498-567 (586)
196 COG0017 AsnS Aspartyl/asparagi 25.9 61 0.0013 36.1 3.3 57 94-154 357-417 (435)
197 KOG0925|consensus 25.8 2.2E+02 0.0048 32.3 7.4 45 355-399 228-273 (699)
198 PLN02850 aspartate-tRNA ligase 25.3 84 0.0018 36.2 4.4 75 66-153 418-511 (530)
199 PTZ00401 aspartyl-tRNA synthet 24.4 85 0.0018 36.3 4.3 79 64-153 436-531 (550)
200 PLN02603 asparaginyl-tRNA synt 23.6 85 0.0019 36.4 4.1 63 82-154 477-547 (565)
201 smart00492 HELICc3 helicase su 23.2 79 0.0017 29.5 3.1 30 389-431 1-30 (141)
202 KOG1000|consensus 23.0 5.1E+02 0.011 29.6 9.5 97 575-686 475-575 (689)
203 KOG0350|consensus 23.0 2.1E+02 0.0044 32.6 6.5 83 589-683 429-511 (620)
204 PLN02221 asparaginyl-tRNA synt 22.5 87 0.0019 36.4 3.9 62 82-153 484-553 (572)
205 COG4096 HsdR Type I site-speci 21.8 4.1E+02 0.0088 32.2 9.0 97 572-679 404-505 (875)
206 KOG0924|consensus 21.2 1.7E+02 0.0037 34.5 5.6 27 285-312 491-519 (1042)
207 KOG0923|consensus 20.0 1E+02 0.0022 36.1 3.6 46 351-396 444-490 (902)
No 1
>KOG1133|consensus
Probab=100.00 E-value=1.1e-43 Score=385.52 Aligned_cols=229 Identities=51% Similarity=0.909 Sum_probs=216.7
Q ss_pred ChHHHHHHHHHHHhccCCCceEEEEECCCCCccEEEEEecCchhhHHHHHhhcceEEEeCCCCCchhhHHHHhhccCCCC
Q psy1221 450 NPMLSVVTFLESLVNKNEDGRILVTKNPELSKSHIKYILLNPANHFTDIVQDARSIIVAGGTMEPVSEFKDQLFGSLGVP 529 (690)
Q Consensus 450 s~l~~l~~fl~~l~~~~~~~~i~~~~~~~~~~~~l~~~~ldp~~~~~~~~~~~~svil~SgTLsP~~~f~~~l~~~~Gl~ 529 (690)
++++.+..||.+|.+.+.+|++++..++. ++|+++.|+|+..|.+++.++|+||+++|||+|.+.|...|+. |.+
T Consensus 496 s~l~~l~~FL~~LTn~~~dGri~~~k~~s---~~lky~lL~pA~~f~evv~earavvLAGGTMeP~~e~~e~L~~--~~~ 570 (821)
T KOG1133|consen 496 SPLFELSSFLGALTNNNEDGRIFYSKQGS---GTLKYMLLNPAKHFAEVVLEARAVVLAGGTMEPVDELREQLFP--GCP 570 (821)
T ss_pred chhHHHHHHHHHHhCCCCCCcEEEeccCC---ceEEEEecCcHHHHHHHHHHhheeeecCCccccHHHHHHHhcc--cch
Confidence 68999999999999999999999976543 8999999999999999999999999999999999999999977 444
Q ss_pred CCceEEEEeCCCccCCCeeEEEeecCCCCcceeeeccccCChHHHHHHHHHHHHhhhcccCcEEEEeccHHHHHHHHHHH
Q psy1221 530 ESRIHHFSCGHVIPKENILPLILCSGPTNRKFDLTFENRTKGDTLKEIAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYM 609 (690)
Q Consensus 530 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~I~~l~~~~~gg~lVfF~Sy~~l~~v~~~~ 609 (690)
+++..++|.|++|++|+.++++..||+|.+++|+|+.|.++++++.++..|.+++.++|||++||||||+||.+++++|
T Consensus 571 -~~i~~fsc~Hvip~e~il~~vv~~gpsg~p~eftf~~R~s~~~l~~l~~~~~nL~~~VPgGvV~FfPSy~yL~~v~k~w 649 (821)
T KOG1133|consen 571 -ERISPFSCSHVIPPENILPLVVSSGPSGQPLEFTFETRESPEMIKDLGSSISNLSNAVPGGVVCFFPSYAYLGQVRKRW 649 (821)
T ss_pred -hhccceecccccChhheeeeeeccCCCCCceEEEeeccCChHHHHHHHHHHHHHHhhCCCcEEEEeccHHHHHHHHHHH
Confidence 6788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCchhHHHHHhcCceEEEcCCCchhHHHHHHHhhhcccC-CceEEEEeeCcccccccccCCCcceEEEEEcCCCCCCC
Q psy1221 610 RDNHFIERIARIAKKKVVFREPKKTSEVDKVLSDYGTSVEK-GGALMLSVIGGKLSEGLNFSDDLGRCVVVMCNSNPLRV 688 (690)
Q Consensus 610 ~~~~~~~~~~~~~~~~~i~~E~~~~~~~~~~l~~f~~~~~~-~~aiLfaV~gG~~sEGIDf~g~~~r~ViivgLPfp~p~ 688 (690)
.++++. .+|..+|++|.|+++. .+.+++.|+++++. .|||||||+|||+||||||.|++|||||+||||||++.
T Consensus 650 ~~~gil---~ri~~kK~vF~E~k~~--~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF~D~LgRaVvvVGlPyPN~~ 724 (821)
T KOG1133|consen 650 EQNGIL---ARIVGKKKVFYEPKDT--VEDVLEGYAEAAERGRGAILLAVVGGKLSEGINFSDDLGRAVVVVGLPYPNIQ 724 (821)
T ss_pred HhcchH---HHhhccchhhccCccc--HHHHHHHHHHHhhcCCCeEEEEEeccccccccccccccccEEEEeecCCCCCC
Confidence 999988 9999999999999976 68999999999876 58999999999999999999999999999999999987
Q ss_pred C
Q psy1221 689 P 689 (690)
Q Consensus 689 d 689 (690)
|
T Consensus 725 s 725 (821)
T KOG1133|consen 725 S 725 (821)
T ss_pred C
Confidence 6
No 2
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.5e-37 Score=363.95 Aligned_cols=230 Identities=29% Similarity=0.529 Sum_probs=200.5
Q ss_pred ChHHHHHHHHHHHhccCCCceEEEEECCCCCccEEEEEecCchhhHHHHHhhcceEEEeCCCCCchhhHHHHhhccCCCC
Q psy1221 450 NPMLSVVTFLESLVNKNEDGRILVTKNPELSKSHIKYILLNPANHFTDIVQDARSIIVAGGTMEPVSEFKDQLFGSLGVP 529 (690)
Q Consensus 450 s~l~~l~~fl~~l~~~~~~~~i~~~~~~~~~~~~l~~~~ldp~~~~~~~~~~~~svil~SgTLsP~~~f~~~l~~~~Gl~ 529 (690)
..+..+..|+..+.....+++..+.. .+..+..|+++|+||+..|++++++++++|||||||+|+++|...| |++
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~l~ps~~~~~i~~~~~svil~SgTL~p~~~~~~~L----g~~ 464 (705)
T TIGR00604 390 VLLFTFATLVLTYTNGFLEGIEPYEN-KTVPNPILKFMCLDPSIALKPLFERVRSVILASGTLSPLDAFPRNL----GFN 464 (705)
T ss_pred hHHHHHHHHHHHhccccccceeEeec-CCCCCceEEEEecChHHHHHHHHHhcCEEEEecccCCcHHHHHHHh----CCC
Confidence 35667777777665555555555532 2234578999999999999999999999999999999999998888 654
Q ss_pred CCceEEEEeCCCccCCCeeEEEeecCCCCcceeeeccccCChHHHHHHHHHHHHhhhcccCcEEEEeccHHHHHHHHHHH
Q psy1221 530 ESRIHHFSCGHVIPKENILPLILCSGPTNRKFDLTFENRTKGDTLKEIAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYM 609 (690)
Q Consensus 530 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~I~~l~~~~~gg~lVfF~Sy~~l~~v~~~~ 609 (690)
.. ...+.+|+|+++|++++++++++++.+++++|.+|+++++++++++.|.++++.+|||+|||||||++|+++++.|
T Consensus 465 ~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~r~~~~~~~~l~~~i~~~~~~~pgg~lvfFpSy~~l~~v~~~~ 542 (705)
T TIGR00604 465 PV--SQDSPTHILKRENLLTLIVTRGSDQVPLSSTFEIRNDPSLVRNLGELLVEFSKIIPDGIVVFFPSYSYLENIVSTW 542 (705)
T ss_pred Cc--cceecCcccchHHeEEEEEeeCCCCCeeeeehhccCCHHHHHHHHHHHHHHhhcCCCcEEEEccCHHHHHHHHHHH
Confidence 32 2347799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCchhHHHHHhcCceEEEcCCCchhHHHHHHHhhhcccC-CceEEEEeeCcccccccccCCCcceEEEEEcCCCCCCC
Q psy1221 610 RDNHFIERIARIAKKKVVFREPKKTSEVDKVLSDYGTSVEK-GGALMLSVIGGKLSEGLNFSDDLGRCVVVMCNSNPLRV 688 (690)
Q Consensus 610 ~~~~~~~~~~~~~~~~~i~~E~~~~~~~~~~l~~f~~~~~~-~~aiLfaV~gG~~sEGIDf~g~~~r~ViivgLPfp~p~ 688 (690)
++.+.+ +++...+++|+|++++.++++++++|++.++. +|+|||||+||+|||||||+|+.+|+|||+|||||+|.
T Consensus 543 ~~~~~~---~~i~~~k~i~~E~~~~~~~~~~l~~f~~~~~~~~gavL~av~gGk~sEGIDf~~~~~r~ViivGlPf~~~~ 619 (705)
T TIGR00604 543 KEMGIL---ENIEKKKLIFVETKDAQETSDALERYKQAVSEGRGAVLLSVAGGKVSEGIDFCDDLGRAVIMVGIPYEYTE 619 (705)
T ss_pred HhcCHH---HHHhcCCCEEEeCCCcchHHHHHHHHHHHHhcCCceEEEEecCCcccCccccCCCCCcEEEEEccCCCCCC
Confidence 988776 78888899999998777889999999987544 58999999999999999999999999999999998886
Q ss_pred C
Q psy1221 689 P 689 (690)
Q Consensus 689 d 689 (690)
|
T Consensus 620 ~ 620 (705)
T TIGR00604 620 S 620 (705)
T ss_pred C
Confidence 5
No 3
>KOG1132|consensus
Probab=100.00 E-value=9.4e-33 Score=308.18 Aligned_cols=199 Identities=31% Similarity=0.560 Sum_probs=186.4
Q ss_pred cEEEEEecCchhhHHHHHhh-cceEEEeCCCCCchhhHHHHhhccCCCCCCceEEEEeCCCccCCCeeEEEeecCCCCcc
Q psy1221 482 SHIKYILLNPANHFTDIVQD-ARSIIVAGGTMEPVSEFKDQLFGSLGVPESRIHHFSCGHVIPKENILPLILCSGPTNRK 560 (690)
Q Consensus 482 ~~l~~~~ldp~~~~~~~~~~-~~svil~SgTLsP~~~f~~~l~~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 560 (690)
..+++||++|+..|++++.+ .++||+|||||+|++.|+..| |++. ...++.+|+++..|+++-+++.||++.+
T Consensus 459 ~vi~~wcf~p~~sf~d~~~k~vrsIiLtSGTLsP~~s~~~El----~~~f--~~~lEn~hii~~~qv~~~vv~~Gp~~~q 532 (945)
T KOG1132|consen 459 PVINFWCFSPGYSFRDLLGKGVRSIILTSGTLSPMDSFASEL----GLEF--KIQLENPHIINKSQVWVGVVPKGPDGAQ 532 (945)
T ss_pred cceeeeecCcchhHHHHhcccceeEEEecccccCchhHHHHh----CCcc--ceeeecchhccccceEEEeeccCCCccc
Confidence 35899999999999999965 999999999999999999999 4433 3578999999999999999999999999
Q ss_pred eeeeccccCChHHHHHHHHHHHHhhhcccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCchhHHHH
Q psy1221 561 FDLTFENRTKGDTLKEIAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKTSEVDKV 640 (690)
Q Consensus 561 ~~~~~~~r~~~~~~~~l~~~I~~l~~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~~~~~~~ 640 (690)
+..+|.+|.+++|+.++++.|.++++++|.|+|||||||.+|+++.+.|+..+.+ +++.+.|++++|++...++.++
T Consensus 533 l~sty~nr~~~ey~~~lg~~i~~v~rvVp~G~L~FfPSY~vmdk~~tfw~~~~~w---e~~~~vk~l~vEPr~k~~f~e~ 609 (945)
T KOG1132|consen 533 LDSTYGNRFTPEYLSELGEAILNVARVVPYGLLIFFPSYPVMDKLITFWQNRGLW---ERMEKVKKLVVEPRSKSEFTEV 609 (945)
T ss_pred cccccccccCHHHHHHHHHHHHHHHhhcccceEEeccchHHHHHHHHHHHcchHH---HHhhcccCceeccCCccchHHH
Confidence 9999999999999999999999999999999999999999999999999988766 9999999999999988899999
Q ss_pred HHHhhhcccC---CceEEEEeeCcccccccccCCCcceEEEEEcCCCCCCCC
Q psy1221 641 LSDYGTSVEK---GGALMLSVIGGKLSEGLNFSDDLGRCVVVMCNSNPLRVP 689 (690)
Q Consensus 641 l~~f~~~~~~---~~aiLfaV~gG~~sEGIDf~g~~~r~ViivgLPfp~p~d 689 (690)
+++|.+++.. .|+++|||||||.|||+||.|+..|+||++|||||+-.|
T Consensus 610 m~~y~~~i~~pes~ga~~~aVcRGKVSEGlDFsD~~~RaVI~tGlPyP~~~D 661 (945)
T KOG1132|consen 610 MSRYYNAIADPESSGAVFFAVCRGKVSEGLDFSDDNGRAVIITGLPYPPVMD 661 (945)
T ss_pred HHHHHHHhhCccccceEEEEEecccccCCCCccccCCceeEEecCCCCCCCC
Confidence 9999998862 789999999999999999999999999999999999877
No 4
>KOG1133|consensus
Probab=99.98 E-value=1.1e-31 Score=292.18 Aligned_cols=225 Identities=40% Similarity=0.755 Sum_probs=196.6
Q ss_pred CcHHHHHHHHHHHhccCCCCeEEEEeCCCCCccEEEEEecChhHHHHHHHhcccEEEEecccCCChhhhHHhhccCCCCC
Q psy1221 240 NPMLSVVTFLESLVNKNEDGRILVTKNPELSKSHIKYILLNPANHFTDIVQDARSIIVAGGTMEPVSEFKDQLFGSLGVP 319 (690)
Q Consensus 240 ~~l~~~~~fl~~l~~~~~~~~v~~~~~~~~~~~~l~~~~ldps~~l~~~~~~~~svIl~SGTL~P~~~~~~~L~~~~g~~ 319 (690)
++++++.+||.+|.+..+||++++.... ..+|+|+.+||+..|.+++.+||+|||++|||+|++.|.++|++ |.+
T Consensus 496 s~l~~l~~FL~~LTn~~~dGri~~~k~~---s~~lky~lL~pA~~f~evv~earavvLAGGTMeP~~e~~e~L~~--~~~ 570 (821)
T KOG1133|consen 496 SPLFELSSFLGALTNNNEDGRIFYSKQG---SGTLKYMLLNPAKHFAEVVLEARAVVLAGGTMEPVDELREQLFP--GCP 570 (821)
T ss_pred chhHHHHHHHHHHhCCCCCCcEEEeccC---CceEEEEecCcHHHHHHHHHHhheeeecCCccccHHHHHHHhcc--cch
Confidence 4699999999999999999999997643 27899999999999999999999999999999999999999987 565
Q ss_pred CCceEeeecCCccCCCCeeEEEeecCCCCceeEEeecccCChHHHHHHHHHHHHHHhccCCeEEEEcCccchHHHHHhhc
Q psy1221 320 ESRIHHFSCGHVIPKENILPLILCSGPTNRKFDLTFENRTKGDTLKEIAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYM 399 (690)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~y~~R~~~~~~~~l~~~i~~~~~~~pgg~lvFFpSY~~l~~v~~~~ 399 (690)
+++..++|.|++|++|+++++++.||+|+++.|+|+.|+.+++++.++..|.+++.+|||||+||||||+||.+++.+|
T Consensus 571 -~~i~~fsc~Hvip~e~il~~vv~~gpsg~p~eftf~~R~s~~~l~~l~~~~~nL~~~VPgGvV~FfPSy~yL~~v~k~w 649 (821)
T KOG1133|consen 571 -ERISPFSCSHVIPPENILPLVVSSGPSGQPLEFTFETRESPEMIKDLGSSISNLSNAVPGGVVCFFPSYAYLGQVRKRW 649 (821)
T ss_pred -hhccceecccccChhheeeeeeccCCCCCceEEEeeccCChHHHHHHHHHHHHHHhhCCCcEEEEeccHHHHHHHHHHH
Confidence 7889999999999999999999999999999999999999999999999999999999999999999999999999966
Q ss_pred CcccccccCCCCcchHHHHHhhhhcCCCCCCCCCCCCCCCCccccccccCChHHHHHHHHHHHhccCCCceEEE-EECCC
Q psy1221 400 PDIEKTQEKPKLSGLQSFLKGVQENNPNLSKPSEGGIEEAPSQVQEDQVRNPMLSVVTFLESLVNKNEDGRILV-TKNPE 478 (690)
Q Consensus 400 ~~~~~~~~~~k~sg~~~~L~~l~~~k~~~~e~~~~~~~~~~~~~~~~~~~s~l~~l~~fl~~l~~~~~~~~i~~-~~~~~ 478 (690)
++ +| +|.+|..+|++|.|++++ +...+..|-+.... ..|.+++ +.+|+
T Consensus 650 -------~~---~g---il~ri~~kK~vF~E~k~~----------------~~dvl~~Ya~a~~~--g~GaiLlaVVGGK 698 (821)
T KOG1133|consen 650 -------EQ---NG---ILARIVGKKKVFYEPKDT----------------VEDVLEGYAEAAER--GRGAILLAVVGGK 698 (821)
T ss_pred -------Hh---cc---hHHHhhccchhhccCccc----------------HHHHHHHHHHHhhc--CCCeEEEEEeccc
Confidence 33 34 899999999999999532 23445566555532 3367766 77777
Q ss_pred CCccEEEEEecCchhhHHHHHhhcceEEEeCCCCC
Q psy1221 479 LSKSHIKYILLNPANHFTDIVQDARSIIVAGGTME 513 (690)
Q Consensus 479 ~~~~~l~~~~ldp~~~~~~~~~~~~svil~SgTLs 513 (690)
.+++ ..|.| +-+|+||+++-+..
T Consensus 699 lSEG----------INF~D--~LgRaVvvVGlPyP 721 (821)
T KOG1133|consen 699 LSEG----------INFSD--DLGRAVVVVGLPYP 721 (821)
T ss_pred cccc----------ccccc--ccccEEEEeecCCC
Confidence 6666 78888 78999999997774
No 5
>KOG1936|consensus
Probab=99.97 E-value=1.4e-30 Score=269.74 Aligned_cols=197 Identities=52% Similarity=0.814 Sum_probs=169.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHhhhhhhhccHHHHHHHHHHHHHHHHHHHhCCCceEEEecCCCCCCCCcc
Q psy1221 1 MVGEKNLSPEVADKIGEYVLKHGHVDLVENLLADEFLAKSKQAKEGLEAIKLLFHYCQIYGLKDTIVFDLSLARGLDYYT 80 (690)
Q Consensus 1 ~~~~~~l~~~~~~~l~~l~~~~G~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~l~~~g~~~~i~~d~~~~r~~~YYt 80 (690)
|+.++||+++++++|.+++.++|..+.+........+..|+.+++|+++|+.++++++.+|+.++|.||+|++||+||||
T Consensus 257 mv~eKGlsee~ad~igeyv~~~g~~eL~e~l~~d~~l~~n~~a~eal~dlk~Lf~y~~~fg~s~~isfDlSLARGLDYYT 336 (518)
T KOG1936|consen 257 MVFEKGLSEEAADRIGEYVSLKGLDELLEKLIADPKLSQNEAAKEALADLKQLFEYLEIFGISERISFDLSLARGLDYYT 336 (518)
T ss_pred HHHhcCCCHHHHHHHHHHhhhccHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHHcCCcceEEeehHHhccchhhh
Confidence 56789999999999999999999977766666544678899999999999999999999999999999999999999999
Q ss_pred eeEEEEEEcC------------------CCcceEeeccchhhhhhhcCCCCCCCCccchhhhhhhhcccccccCcceeee
Q psy1221 81 GVIYEAVLKD------------------QAVGSVAGGGRYDNLVGMFDPKNKTTPCVAAKLLHEVQGLLETSCRSCREDI 142 (690)
Q Consensus 81 G~vFe~~~~~------------------~~~~~i~~GGRYD~L~~~f~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~ 142 (690)
|+|||++..+ ...++||+|||||+|+..|+..+..+||+| +|+
T Consensus 337 GvIyEav~~~~~~~~~a~~~~~~~~~e~~~vGSvaaGGRYDnLv~mf~~k~~~vPcvG-------------------~S~ 397 (518)
T KOG1936|consen 337 GVIYEAVLRGLRLICPAGRYDQAGSTEPGGVGSVAAGGRYDNLVGMFDKKGDKVPCVG-------------------QSV 397 (518)
T ss_pred ceeeeeeeccccccCcchhhhccccccCCCccccccCcchhhHHHHhccccCcCCccc-------------------eee
Confidence 9999999953 123789999999999999998766899977 899
Q ss_pred eHHHHHHHHHhhhhccCCcccCCceeEEEEeCCccchHHHHhHhhhhhcCCcccCC--cccccHHHHHhhhhhcCC
Q psy1221 143 GVERLFSIIENRNAEQGVKVKTTSTQVYVASAQKNLVEPRMQLCHELWGGEKTQEK--PKLSGLQSFLKGVQENNP 216 (690)
Q Consensus 143 ~~~~l~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~l~~~L~~~~i~~~~--~~~~~Lk~~lk~~~kl~~ 216 (690)
|++||+++++++....+....++.++|||++++...+.+|+.+++.||.+++..+. -...++.++++.+++..-
T Consensus 398 GVeRiFsile~r~~~~~~~iR~t~t~V~V~~~~k~~l~eR~k~v~~Lw~agI~aE~~yk~~~~~~~q~~~~e~~~i 473 (518)
T KOG1936|consen 398 GVERIFSILEQRAATVATKIRTTETQVYVAAAGKNLLFERLKVVNALWDAGIKAEYLYKANPKLLKQFQYAEEAGI 473 (518)
T ss_pred hHhHHHHHHHHHHHhhhhccccCceEEEEEecCCchHHHHHHHHHHHHhcCcchhhhhhcCccHHHHHHHHHhcCC
Confidence 99999999998765444445578899999999999999999999999998776652 223466788887777654
No 6
>KOG1131|consensus
Probab=99.96 E-value=1.3e-28 Score=260.02 Aligned_cols=228 Identities=25% Similarity=0.466 Sum_probs=196.6
Q ss_pred CChHHHHHHHHHHHhccCCCceEEEEE-----CCCCCccEEEEEecCchhhHHHHHhhcceEEEeCCCCCchhhHHHHhh
Q psy1221 449 RNPMLSVVTFLESLVNKNEDGRILVTK-----NPELSKSHIKYILLNPANHFTDIVQDARSIIVAGGTMEPVSEFKDQLF 523 (690)
Q Consensus 449 ~s~l~~l~~fl~~l~~~~~~~~i~~~~-----~~~~~~~~l~~~~ldp~~~~~~~~~~~~svil~SgTLsP~~~f~~~l~ 523 (690)
..++..+.+|. ++...+..|+.++.+ .....+..|++.|+|+|...+.++.++++||.|||||+|++.|-+.+
T Consensus 392 f~~l~~v~~fa-TlVstY~kGF~iIiEPfd~~~~tv~npil~~sClDaSiAikPVf~RFqsViITSGTlspldmyPk~l- 469 (755)
T KOG1131|consen 392 FGALKTVADFA-TLVSTYSKGFSIIIEPFDDRNPTVPNPILRFSCLDASIAIKPVFERFQSVIITSGTLSPLDMYPKIL- 469 (755)
T ss_pred hhHHHHHHHHH-HHHHHHhcCcEEEEcccccCCCCCCCCeeEEeecccchhhhHHHHhhheEEEecCcccccccCchhh-
Confidence 45788888885 455566778766532 22234779999999999999999999999999999999999997666
Q ss_pred ccCCCCCCceEEEEeCCCccCCCeeEEEeecCCCCcceeeeccccCChHHHHHHHHHHHHhhhcccCcEEEEeccHHHHH
Q psy1221 524 GSLGVPESRIHHFSCGHVIPKENILPLILCSGPTNRKFDLTFENRTKGDTLKEIAMTITNLCTIVPKGMVCFFPSYDYEA 603 (690)
Q Consensus 524 ~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~I~~l~~~~~gg~lVfF~Sy~~l~ 603 (690)
+..++...+.........+.++++++|.+...++++|+.|+++...+.++..+.+.++.+|+|+++|||||-+|+
T Consensus 470 -----nf~pv~~~s~~mtLaR~c~~PmiitrG~Dqv~iss~fe~r~d~~VvrnyG~llve~sk~vpdG~v~ff~sylYme 544 (755)
T KOG1131|consen 470 -----NFGPVVGASFTMTLARNCLLPLIITRGNDQVAISSKFEARGDPSVVRNYGNLLVEMSKIVPDGIVCFFPSYLYME 544 (755)
T ss_pred -----ccCcccchhhheecccccccceeeecCCcchhhhhhhhhccChHHHhhcCcceeeecccCCCceEEEEehHHHHH
Confidence 122233333444445556677999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCchhHHHHHhcCceEEEcCCCchhHHHHHHHhhhcccC-CceEEEEeeCcccccccccCCCcceEEEEEcC
Q psy1221 604 IVYNYMRDNHFIERIARIAKKKVVFREPKKTSEVDKVLSDYGTSVEK-GGALMLSVIGGKLSEGLNFSDDLGRCVVVMCN 682 (690)
Q Consensus 604 ~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~~~~~~~l~~f~~~~~~-~~aiLfaV~gG~~sEGIDf~g~~~r~ViivgL 682 (690)
.+...|...++. +++.+.|.+|+|.++..+..-.++.|++.|.. .|||||+|+|||.||||||..+.+|+||+.|+
T Consensus 545 siv~~w~~~gil---~ei~k~KL~fIetpD~~ETs~al~ny~~aC~~gRGavl~sVargkVsEgidF~hhyGR~ViM~gI 621 (755)
T KOG1131|consen 545 SIVSRWYEQGIL---DEIMKYKLLFIETPDFRETSLALANYRYACDNGRGAVLLSVARGKVSEGIDFDHHYGREVIMEGI 621 (755)
T ss_pred HHHHHHHHHhHH---HHHhhCceEEEeCCchhhhHHHHHHHHHHhcCCCCceEEEEecCccccCcccccccCceEEEEec
Confidence 999999999887 99999999999999988889999999999987 69999999999999999999999999999999
Q ss_pred CCCC
Q psy1221 683 SNPL 686 (690)
Q Consensus 683 Pfp~ 686 (690)
||.-
T Consensus 622 P~qy 625 (755)
T KOG1131|consen 622 PYQY 625 (755)
T ss_pred cchh
Confidence 9963
No 7
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.95 E-value=1.6e-27 Score=277.60 Aligned_cols=197 Identities=13% Similarity=0.176 Sum_probs=158.8
Q ss_pred ceEEEEECC---CCCccEEEEEecCchhhHHH-HHhhcceEEEeCCCCCchhhHHHHhhccCCCCC-CceEEEEeCCCcc
Q psy1221 469 GRILVTKNP---ELSKSHIKYILLNPANHFTD-IVQDARSIIVAGGTMEPVSEFKDQLFGSLGVPE-SRIHHFSCGHVIP 543 (690)
Q Consensus 469 ~~i~~~~~~---~~~~~~l~~~~ldp~~~~~~-~~~~~~svil~SgTLsP~~~f~~~l~~~~Gl~~-~~~~~~~~~~~f~ 543 (690)
+.++|.+.. +.....|+..|+||+..+++ ++++++++|+|||||+|.+.| +++...+|++. ..+..+..+|||+
T Consensus 419 ~~v~Wie~~~~~~~~~~~l~~~Pl~~~~~l~~~l~~~~~~vIltSATL~~~~~f-~~~~~~lGL~~~~~~~~~~~~SpF~ 497 (697)
T PRK11747 419 PMARWITREERDGQGDYLFHASPIRVGDQLERLLWSRAPGAVLTSATLRSLNSF-DRFQEQSGLPEKDGDRFLALPSPFD 497 (697)
T ss_pred CceEEEEeccCCCCceEEEEEecCCHHHHHHHHHHhhCCEEEEEeeeCCCCCch-HHHHHHcCCCCCCCceEEEcCCCCC
Confidence 457784432 23457899999999999965 558999999999999998777 55656669864 2356788999999
Q ss_pred CCCeeEEEeecCCCCcceeeeccccCChHHHHHHHHHHHHhhhcccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhc
Q psy1221 544 KENILPLILCSGPTNRKFDLTFENRTKGDTLKEIAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAK 623 (690)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~I~~l~~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~ 623 (690)
+++...+++++.+. ..++++++.+.+++.|.+++. .+||+|||||||.+|+++++.|... .
T Consensus 498 ~~~q~~l~vp~~~~--------~p~~~~~~~~~~~~~i~~l~~-~~gg~LVlFtSy~~l~~v~~~l~~~----------~ 558 (697)
T PRK11747 498 YPNQGKLVIPKMRA--------EPDNEEAHTAEMAEFLPELLE-KHKGSLVLFASRRQMQKVADLLPRD----------L 558 (697)
T ss_pred HHHccEEEeCCCCC--------CCCCcHHHHHHHHHHHHHHHh-cCCCEEEEeCcHHHHHHHHHHHHHh----------c
Confidence 87777777765421 124567899999999999999 9999999999999999999999832 1
Q ss_pred CceEEEcCCCchhHHHHHHHhhhcccC-CceEEEEeeCcccccccccCCCcceEEEEEcCCCCCCCC
Q psy1221 624 KKVVFREPKKTSEVDKVLSDYGTSVEK-GGALMLSVIGGKLSEGLNFSDDLGRCVVVMCNSNPLRVP 689 (690)
Q Consensus 624 ~~~i~~E~~~~~~~~~~l~~f~~~~~~-~~aiLfaV~gG~~sEGIDf~g~~~r~ViivgLPfp~p~d 689 (690)
..+++.|+. .++.+++++|++.+.. +++||||| |+|||||||+|+.|++|||+|||||+|+|
T Consensus 559 ~~~ll~Q~~--~~~~~ll~~f~~~~~~~~~~VL~g~--~sf~EGVD~pGd~l~~vII~kLPF~~p~d 621 (697)
T PRK11747 559 RLMLLVQGD--QPRQRLLEKHKKRVDEGEGSVLFGL--QSFAEGLDLPGDYLTQVIITKIPFAVPDS 621 (697)
T ss_pred CCcEEEeCC--chHHHHHHHHHHHhccCCCeEEEEe--ccccccccCCCCceEEEEEEcCCCCCCCC
Confidence 256888875 3568999999875433 58999999 99999999999999999999999999976
No 8
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.95 E-value=4.9e-27 Score=281.67 Aligned_cols=204 Identities=14% Similarity=0.226 Sum_probs=160.4
Q ss_pred CCCceEEEEECC---CCCccEEEEEecCchhhHHHHH-hhcceEEEeCCCCCchhhHHHHhhccCCCCCCceEEEEeCCC
Q psy1221 466 NEDGRILVTKNP---ELSKSHIKYILLNPANHFTDIV-QDARSIIVAGGTMEPVSEFKDQLFGSLGVPESRIHHFSCGHV 541 (690)
Q Consensus 466 ~~~~~i~~~~~~---~~~~~~l~~~~ldp~~~~~~~~-~~~~svil~SgTLsP~~~f~~~l~~~~Gl~~~~~~~~~~~~~ 541 (690)
.+++.++|.+.. +.....|+..|+|++..+++.+ ++++++|||||||++.+.| +++...+|++...+..+..+||
T Consensus 632 ~~~~~v~w~e~~~~~~~~~~~l~~~pld~~~~l~~~l~~~~~~~iltSATL~~~~~f-~~~~~~lGl~~~~~~~~~~~Sp 710 (928)
T PRK08074 632 EDPDYVTWIEIDAKGAINATRLYAQPVEVAERLADEFFAKKKSVILTSATLTVNGSF-DYIIERLGLEDFYPRTLQIPSP 710 (928)
T ss_pred CCCCeEEEEEecCCCCCceEEEEEeeccHHHHHHHHHHhcCCcEEEEeeecccCCCc-HHHHHhcCCCCCCccEEEeCCC
Confidence 344667784322 1234679999999999998865 7899999999999976666 4444455887545567899999
Q ss_pred ccC-CCeeEEEeecCCCCcceeeeccccCChHHHHHHHHHHHHhhhcccCcEEEEeccHHHHHHHHHHHHhcCchhHHHH
Q psy1221 542 IPK-ENILPLILCSGPTNRKFDLTFENRTKGDTLKEIAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIAR 620 (690)
Q Consensus 542 f~~-~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~I~~l~~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~ 620 (690)
|++ +|..+++.++.|++ ..+++++|.+.+++.|.+++..++|++|||||||++|++|++.|+.....
T Consensus 711 F~~~~q~~l~vp~d~p~~-------~~~~~~~~~~~la~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~----- 778 (928)
T PRK08074 711 FSYEEQAKLMIPTDMPPI-------KDVPIEEYIEEVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEEL----- 778 (928)
T ss_pred CCHHHhcEEEeecCCCCC-------CCCChHHHHHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccc-----
Confidence 996 55555555445543 23345789999999999999999999999999999999999999853211
Q ss_pred HhcCceEEEcCCCchhHHHHHHHhhhcccCCceEEEEeeCcccccccccCCCcceEEEEEcCCCCCCCC
Q psy1221 621 IAKKKVVFREPKKTSEVDKVLSDYGTSVEKGGALMLSVIGGKLSEGLNFSDDLGRCVVVMCNSNPLRVP 689 (690)
Q Consensus 621 ~~~~~~i~~E~~~~~~~~~~l~~f~~~~~~~~aiLfaV~gG~~sEGIDf~g~~~r~ViivgLPfp~p~d 689 (690)
....++.|+...+++.+++++|++. +++||||+ |+|||||||+|+.+++|||+|||||+|+|
T Consensus 779 --~~~~ll~Qg~~~~~r~~l~~~F~~~---~~~iLlG~--~sFwEGVD~pg~~l~~viI~kLPF~~p~d 840 (928)
T PRK08074 779 --EGYVLLAQGVSSGSRARLTKQFQQF---DKAILLGT--SSFWEGIDIPGDELSCLVIVRLPFAPPDQ 840 (928)
T ss_pred --cCceEEecCCCCCCHHHHHHHHHhc---CCeEEEec--CcccCccccCCCceEEEEEecCCCCCCCC
Confidence 1235677654445789999999986 78999998 99999999999999999999999999987
No 9
>PLN02972 Histidyl-tRNA synthetase
Probab=99.95 E-value=3.8e-27 Score=268.11 Aligned_cols=194 Identities=39% Similarity=0.594 Sum_probs=158.0
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHhhhh--hhhccHHHHHHHHHHHHHHHHHHHhCCCceEEEecCCCCCCCCcc
Q psy1221 3 GEKNLSPEVADKIGEYVLKHGHVDLVENLLADE--FLAKSKQAKEGLEAIKLLFHYCQIYGLKDTIVFDLSLARGLDYYT 80 (690)
Q Consensus 3 ~~~~l~~~~~~~l~~l~~~~G~~~~~~~~l~~~--~~~~~~~~~~~l~~l~~~~~~l~~~g~~~~i~~d~~~~r~~~YYt 80 (690)
+.+|++++.++.|.+|+.++|++..+.+.++.. .+..++.+++++++|++++++|+.+|+.+++.|||+++||+||||
T Consensus 524 ~~~gLs~e~~~~L~~L~~L~G~~~evLd~L~~~~~~l~~~~~~~~aL~eL~~L~~~L~~~gv~~~I~fDlsLvRGLDYYT 603 (763)
T PLN02972 524 EEKGLSNETADKIGNFVKERGPPLELLSKLRQEGSEFLGNASSRAALDELEIMFKALEKSKAIGKIVFDLSLARGLDYYT 603 (763)
T ss_pred hhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhHhhccChHHHHHHHHHHHHHHHHHhcCCCccEEECCcccCCCcccC
Confidence 457899999999999999999876666665431 245577889999999999999999999878999999999999999
Q ss_pred eeEEEEEEcCCCcceEeeccchhhhhhhcCCCCCCCCccchhhhhhhhcccccccCcceeeeeHHHHHHHHHhhhhccCC
Q psy1221 81 GVIYEAVLKDQAVGSVAGGGRYDNLVGMFDPKNKTTPCVAAKLLHEVQGLLETSCRSCREDIGVERLFSIIENRNAEQGV 160 (690)
Q Consensus 81 G~vFe~~~~~~~~~~i~~GGRYD~L~~~f~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~ 160 (690)
|+|||+|..+...++||+|||||+|++.||+ +++|| ||||||+|||+.++++.+.....
T Consensus 604 GiVFE~~~~g~~~gsIagGGRYD~Lv~~FgG--~~vPA-------------------VGFSiGIERL~~~L~~~~~~~~~ 662 (763)
T PLN02972 604 GVIYEAVFKGAQVGSIAAGGRYDNLVGMFSG--KQVPA-------------------VGVSLGIERVFAIMEQQEEEKSQ 662 (763)
T ss_pred ceEEEEEEcCCccceeeecCCchhHHHhcCC--CCCCE-------------------EEEEecHHHHHHHHHHcccCCCC
Confidence 9999999987434799999999999999985 46775 45999999999999875432111
Q ss_pred cccCCceeEEEEeCCccchHHHHhHhhhhhcCCcccCCcccccHHHHHhhhhhcCCC
Q psy1221 161 KVKTTSTQVYVASAQKNLVEPRMQLCHELWGGEKTQEKPKLSGLQSFLKGVQENNPN 217 (690)
Q Consensus 161 ~~~~~~~~v~v~~~~~~~~~~~~~l~~~L~~~~i~~~~~~~~~Lk~~lk~~~kl~~~ 217 (690)
...+..++|||++.++....+++++++.||+.++..+.....+++++++.+++....
T Consensus 663 ~~~~~~~dVlV~s~g~~~l~~alkia~~LR~aGI~aE~~~~~kl~kq~~~A~k~gi~ 719 (763)
T PLN02972 663 VIRPTETEVLVSIIGDDKLALAAELVSELWNAGIKAEYKVSTRKAKHLKRAKESGIP 719 (763)
T ss_pred CCCCCCCcEEEEEeCHHHHHHHHHHHHHHHHCCCEEEEeCCCCHHHHHHHHHHCCCC
Confidence 123456899999999888889999999999976654433356789999999887654
No 10
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=2.1e-26 Score=249.36 Aligned_cols=182 Identities=30% Similarity=0.393 Sum_probs=144.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHhhhhhhhccHHHHHHHHHHHHHHHHHHHhCCCceEEEecCCCCCCCCcceeEEEEE
Q psy1221 8 SPEVADKIGEYVLKHGHVDLVENLLADEFLAKSKQAKEGLEAIKLLFHYCQIYGLKDTIVFDLSLARGLDYYTGVIYEAV 87 (690)
Q Consensus 8 ~~~~~~~l~~l~~~~G~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~l~~~g~~~~i~~d~~~~r~~~YYtG~vFe~~ 87 (690)
.....+.|..|....+....+.+.+. .++..++ ++++++++++.++|+.+|++ +.+||+++||+|||||+|||++
T Consensus 205 ~r~~~n~lr~ld~k~~~~~~~~~~ap-~i~~~~~--~e~~~~~~~v~~~L~~~g~~--~~id~~lvRGLDYYtg~VFE~~ 279 (429)
T COG0124 205 RRLKTNPLRVLDSKKDSDQELLKNAP-ELLDYLD--EESLEHLEELLALLDALGIS--YEIDPSLVRGLDYYTGTVFEAV 279 (429)
T ss_pred hhhhhchHHHHHhccchHHHHHhccH-Hhhhhcc--HHHHHHHHHHHHHHHHcCCC--EEEccceecchhhccceEEEEE
Confidence 33455566555555555333333221 1122122 27999999999999999966 9999999999999999999999
Q ss_pred EcCC-CcceEeeccchhhhhhhcCCCCCCCCccchhhhhhhhcccccccCcceeeeeHHHHHHHHHhhhhccCCcccCCc
Q psy1221 88 LKDQ-AVGSVAGGGRYDNLVGMFDPKNKTTPCVAAKLLHEVQGLLETSCRSCREDIGVERLFSIIENRNAEQGVKVKTTS 166 (690)
Q Consensus 88 ~~~~-~~~~i~~GGRYD~L~~~f~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~ 166 (690)
..+. ++++||+|||||+|++.||+ +++||+| ||+|+|||+.+++..+. .......
T Consensus 280 ~~~~~~~~sI~gGGRYD~Lv~~~gG--~~~pavG-------------------FaiGveRl~~~l~~~~~---~~~~~~~ 335 (429)
T COG0124 280 TDGLGAQGSVCGGGRYDGLVEEFGG--KPTPAVG-------------------FAIGVERLILALEEEGK---EDPVETR 335 (429)
T ss_pred EcCCccccceecCccchHHHHHhCC--CCCCcee-------------------EehHHHHHHHHHHHcCC---CCCcCCC
Confidence 9874 47899999999999999996 6788655 99999999999998754 1234678
Q ss_pred eeEEEEeCCccchHHHHhHhhhhhcCC-cccCCcccccHHHHHhhhhhcCCCC
Q psy1221 167 TQVYVASAQKNLVEPRMQLCHELWGGE-KTQEKPKLSGLQSFLKGVQENNPNL 218 (690)
Q Consensus 167 ~~v~v~~~~~~~~~~~~~l~~~L~~~~-i~~~~~~~~~Lk~~lk~~~kl~~~~ 218 (690)
++|||++.++.....++.+++.||.++ .++.+...++++++++.+++..+..
T Consensus 336 ~~v~v~~~~~~~~~~a~~la~~LR~~g~~~~~~~~~r~~k~q~k~A~~~g~~~ 388 (429)
T COG0124 336 VDVYVVPLGEDAEPEALKLAQKLRAAGISVEVDYSGRKLKKQFKYADKLGARF 388 (429)
T ss_pred CCEEEEEcCchhHHHHHHHHHHHHHcCCcEEEEeccccHHHHHHHHHHCCCCE
Confidence 999999999988889999999999965 4555777788999999999999866
No 11
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.93 E-value=5e-25 Score=258.56 Aligned_cols=225 Identities=22% Similarity=0.425 Sum_probs=179.0
Q ss_pred cHHHHHHHHHHHhccCCCCeEEEEeCCCCCccEEEEEecChhHHHHHHHhcccEEEEecccCCChhhhHHhhccCCCCCC
Q psy1221 241 PMLSVVTFLESLVNKNEDGRILVTKNPELSKSHIKYILLNPANHFTDIVQDARSIIVAGGTMEPVSEFKDQLFGSLGVPE 320 (690)
Q Consensus 241 ~l~~~~~fl~~l~~~~~~~~v~~~~~~~~~~~~l~~~~ldps~~l~~~~~~~~svIl~SGTL~P~~~~~~~L~~~~g~~~ 320 (690)
.++.+..|+..+.+.+.+++..+.. .+.....|+++|+||+.+|+++++++||||||||||+|+++|..+| |++.
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~l~ps~~~~~i~~~~~svil~SgTL~p~~~~~~~L----g~~~ 465 (705)
T TIGR00604 391 LLFTFATLVLTYTNGFLEGIEPYEN-KTVPNPILKFMCLDPSIALKPLFERVRSVILASGTLSPLDAFPRNL----GFNP 465 (705)
T ss_pred HHHHHHHHHHHhccccccceeEeec-CCCCCceEEEEecChHHHHHHHHHhcCEEEEecccCCcHHHHHHHh----CCCC
Confidence 4667778877766666777776642 2234578999999999999999999999999999999999999999 7653
Q ss_pred CceEeeecCCccCCCCeeEEEeecCCCCceeEEeecccCChHHHHHHHHHHHHHHhccCCeEEEEcCccchHHHHHhhcC
Q psy1221 321 SRIHHFSCGHVIPKENILPLILCSGPTNRKFDLTFENRTKGDTLKEIAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYMP 400 (690)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~y~~R~~~~~~~~l~~~i~~~~~~~pgg~lvFFpSY~~l~~v~~~~~ 400 (690)
. ...+.+|+|+++|++++++++++++.+++++|++|+++++++++|++|.++++.+|||+|||||||.+|+++++.|.
T Consensus 466 ~--~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~r~~~~~~~~l~~~i~~~~~~~pgg~lvfFpSy~~l~~v~~~~~ 543 (705)
T TIGR00604 466 V--SQDSPTHILKRENLLTLIVTRGSDQVPLSSTFEIRNDPSLVRNLGELLVEFSKIIPDGIVVFFPSYSYLENIVSTWK 543 (705)
T ss_pred c--cceecCcccchHHeEEEEEeeCCCCCeeeeehhccCCHHHHHHHHHHHHHHhhcCCCcEEEEccCHHHHHHHHHHHH
Confidence 3 23477999999999999999999999999999999999999999999999999999999999999999999999773
Q ss_pred cccccccCCCCcchHHHHHhhhhcCCCCCCCCCCCCCCCCccccccccCChHHHHHHHHHHHhccCCCceEEE-EECCCC
Q psy1221 401 DIEKTQEKPKLSGLQSFLKGVQENNPNLSKPSEGGIEEAPSQVQEDQVRNPMLSVVTFLESLVNKNEDGRILV-TKNPEL 479 (690)
Q Consensus 401 ~~~~~~~~~k~sg~~~~L~~l~~~k~~~~e~~~~~~~~~~~~~~~~~~~s~l~~l~~fl~~l~~~~~~~~i~~-~~~~~~ 479 (690)
+ ++ +++++.+.|.++.|+++.. +.-..+.+|...+. ...+.+++ +.+|+-
T Consensus 544 -------~---~~---~~~~i~~~k~i~~E~~~~~--------------~~~~~l~~f~~~~~--~~~gavL~av~gGk~ 594 (705)
T TIGR00604 544 -------E---MG---ILENIEKKKLIFVETKDAQ--------------ETSDALERYKQAVS--EGRGAVLLSVAGGKV 594 (705)
T ss_pred -------h---cC---HHHHHhcCCCEEEeCCCcc--------------hHHHHHHHHHHHHh--cCCceEEEEecCCcc
Confidence 1 22 5677777788888884221 12234455654442 23466766 777776
Q ss_pred CccEEEEEecCchhhHHHHHhhcceEEEeCCCCC
Q psy1221 480 SKSHIKYILLNPANHFTDIVQDARSIIVAGGTME 513 (690)
Q Consensus 480 ~~~~l~~~~ldp~~~~~~~~~~~~svil~SgTLs 513 (690)
+++ .+|.+ +.++.||+++-+..
T Consensus 595 sEG----------IDf~~--~~~r~ViivGlPf~ 616 (705)
T TIGR00604 595 SEG----------IDFCD--DLGRAVIMVGIPYE 616 (705)
T ss_pred cCc----------cccCC--CCCcEEEEEccCCC
Confidence 666 56665 67899999998883
No 12
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.93 E-value=7.7e-25 Score=256.26 Aligned_cols=214 Identities=21% Similarity=0.322 Sum_probs=162.1
Q ss_pred ChHHHHHHHHHHHh-----ccCCCceEEEEECCCCCcc-EEEEEecCchhhHHHHHhhcceEEEeCCCCCchhhHHHHhh
Q psy1221 450 NPMLSVVTFLESLV-----NKNEDGRILVTKNPELSKS-HIKYILLNPANHFTDIVQDARSIIVAGGTMEPVSEFKDQLF 523 (690)
Q Consensus 450 s~l~~l~~fl~~l~-----~~~~~~~i~~~~~~~~~~~-~l~~~~ldp~~~~~~~~~~~~svil~SgTLsP~~~f~~~l~ 523 (690)
+.+.++..++..+. ..+..+...|....+.... .+...|++|+...+.++..++++|||||||+|.++|...+
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vl~SaTL~~~~~f~~~~- 423 (654)
T COG1199 345 SILERLKEELDRLLSRELLLSDDPDYSYWLEIEEREGVLLLVLPLLVPSKLLEELFSKVASVVLTSATLSPLDSFSSLL- 423 (654)
T ss_pred HHHHHHHHHHHHHHhhcccccCCCCceEEEEecccccceeEEeecccHHHHHHHHHhhcCcEEEeeeeccCCCcHHHHH-
Confidence 45666666666443 2334457777443322222 4788888899888899999999999999999999996655
Q ss_pred ccCCCCCCceEEEEeCCCccCCCeeEEEeecCCCCcceeeeccccCChHHHHHHHHHHHHhhhcccCcEEEEeccHHHHH
Q psy1221 524 GSLGVPESRIHHFSCGHVIPKENILPLILCSGPTNRKFDLTFENRTKGDTLKEIAMTITNLCTIVPKGMVCFFPSYDYEA 603 (690)
Q Consensus 524 ~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~I~~l~~~~~gg~lVfF~Sy~~l~ 603 (690)
...|+.... ..+..++||+......+.++. .+.++.++++.+++++.|.++++..|||+|||||||.+|+
T Consensus 424 ~~~~~~~~~-~~~~~~spf~~~~~~~~~v~~---------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~lvlF~Sy~~l~ 493 (654)
T COG1199 424 GLLGLEEKL-RFLSLPSPFNYEEQGQLYVPT---------DLPEPREPELLAKLAAYLREILKASPGGVLVLFPSYEYLK 493 (654)
T ss_pred HHcCCcccc-ceeccCCCCChhhcceEeccc---------cCCCCCChHHHHHHHHHHHHHHhhcCCCEEEEeccHHHHH
Confidence 434554332 468899999966554444432 2444444689999999999999999999999999999999
Q ss_pred HHHHHHHhcCchhHHHHHhcCceEEEcCCCchhHHHHHHHhhhcccCCceEEEEeeCcccccccccCCCcceEEEEEcCC
Q psy1221 604 IVYNYMRDNHFIERIARIAKKKVVFREPKKTSEVDKVLSDYGTSVEKGGALMLSVIGGKLSEGLNFSDDLGRCVVVMCNS 683 (690)
Q Consensus 604 ~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~~~~~~~l~~f~~~~~~~~aiLfaV~gG~~sEGIDf~g~~~r~ViivgLP 683 (690)
.+++.|+..... ..++.++.. +.+.++++|+... ++ +++|++|+|||||||+|+.+++|||+|||
T Consensus 494 ~~~~~~~~~~~~---------~~v~~q~~~--~~~~~l~~f~~~~--~~--~~lv~~gsf~EGVD~~g~~l~~vvI~~lP 558 (654)
T COG1199 494 RVAERLKDERST---------LPVLTQGED--EREELLEKFKASG--EG--LILVGGGSFWEGVDFPGDALRLVVIVGLP 558 (654)
T ss_pred HHHHHHhhcCcc---------ceeeecCCC--cHHHHHHHHHHhc--CC--eEEEeeccccCcccCCCCCeeEEEEEecC
Confidence 999999964321 345555544 4468999999974 22 66777799999999999999999999999
Q ss_pred CCCCCC
Q psy1221 684 NPLRVP 689 (690)
Q Consensus 684 fp~p~d 689 (690)
||+|+|
T Consensus 559 fp~p~d 564 (654)
T COG1199 559 FPNPDD 564 (654)
T ss_pred CCCCCC
Confidence 999997
No 13
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.92 E-value=1.3e-24 Score=259.65 Aligned_cols=196 Identities=17% Similarity=0.257 Sum_probs=153.1
Q ss_pred ceEEEEECCC---CCccEEEEEecCchhhHHH-HHhhcceEEEeCCCCC---chhhHHHHhhccCCCCCCceEEEEeCCC
Q psy1221 469 GRILVTKNPE---LSKSHIKYILLNPANHFTD-IVQDARSIIVAGGTME---PVSEFKDQLFGSLGVPESRIHHFSCGHV 541 (690)
Q Consensus 469 ~~i~~~~~~~---~~~~~l~~~~ldp~~~~~~-~~~~~~svil~SgTLs---P~~~f~~~l~~~~Gl~~~~~~~~~~~~~ 541 (690)
..++|....+ .....|+..|+||+..+.+ ++++.+++|+|||||+ |+++|.+.+ |++......+. +||
T Consensus 558 ~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~l----Gl~~~~~~~~~-~sp 632 (850)
T TIGR01407 558 GHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLL----GLTDVHFNTIE-PTP 632 (850)
T ss_pred CCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhc----CCCccccceec-CCC
Confidence 3466743221 2345799999999988855 5578999999999998 566666666 88654334444 999
Q ss_pred cc-CCCeeEEEeecCCCCcceeeeccccCChHHHHHHHHHHHHhhhcccCcEEEEeccHHHHHHHHHHHHhcCchhHHHH
Q psy1221 542 IP-KENILPLILCSGPTNRKFDLTFENRTKGDTLKEIAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIAR 620 (690)
Q Consensus 542 f~-~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~I~~l~~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~ 620 (690)
|+ .+|..+++..+.|.. ..++.+++.+++++.|.+++...+|++|||||||.+|+++++.+......
T Consensus 633 f~~~~~~~l~v~~d~~~~-------~~~~~~~~~~~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~----- 700 (850)
T TIGR01407 633 LNYAENQRVLIPTDAPAI-------QNKSLEEYAQEIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPEF----- 700 (850)
T ss_pred CCHHHcCEEEecCCCCCC-------CCCChHHHHHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhccc-----
Confidence 99 577766666555432 23345688999999999999999999999999999999999999842211
Q ss_pred HhcCceEEEcCCCchhHHHHHHHhhhcccCCceEEEEeeCcccccccccCCCcceEEEEEcCCCCCCCC
Q psy1221 621 IAKKKVVFREPKKTSEVDKVLSDYGTSVEKGGALMLSVIGGKLSEGLNFSDDLGRCVVVMCNSNPLRVP 689 (690)
Q Consensus 621 ~~~~~~i~~E~~~~~~~~~~l~~f~~~~~~~~aiLfaV~gG~~sEGIDf~g~~~r~ViivgLPfp~p~d 689 (690)
...+++.|... +++.+++++|++. +++||||+ |+|||||||+|+.+++|||+|||||+|+|
T Consensus 701 --~~~~~l~q~~~-~~r~~ll~~F~~~---~~~iLlgt--~sf~EGVD~~g~~l~~viI~~LPf~~p~d 761 (850)
T TIGR01407 701 --EGYEVLAQGIN-GSRAKIKKRFNNG---EKAILLGT--SSFWEGVDFPGNGLVCLVIPRLPFANPKH 761 (850)
T ss_pred --cCceEEecCCC-ccHHHHHHHHHhC---CCeEEEEc--ceeecccccCCCceEEEEEeCCCCCCCCC
Confidence 23457777654 5789999999986 78999998 99999999999999999999999999987
No 14
>KOG1132|consensus
Probab=99.92 E-value=1.5e-24 Score=242.79 Aligned_cols=201 Identities=22% Similarity=0.467 Sum_probs=174.4
Q ss_pred cEEEEEecChhHHHHHHHhc-ccEEEEecccCCChhhhHHhhccCCCCCCCceEeeecCCccCCCCeeEEEeecCCCCce
Q psy1221 272 SHIKYILLNPANHFTDIVQD-ARSIIVAGGTMEPVSEFKDQLFGSLGVPESRIHHFSCGHVIPKENILPLILCSGPTNRK 350 (690)
Q Consensus 272 ~~l~~~~ldps~~l~~~~~~-~~svIl~SGTL~P~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 350 (690)
..|.+||++|+..|++++.+ .||||||||||+|++.|+.+| |++.. ..++++|+++..|+++.+++.||++..
T Consensus 459 ~vi~~wcf~p~~sf~d~~~k~vrsIiLtSGTLsP~~s~~~El----~~~f~--~~lEn~hii~~~qv~~~vv~~Gp~~~q 532 (945)
T KOG1132|consen 459 PVINFWCFSPGYSFRDLLGKGVRSIILTSGTLSPMDSFASEL----GLEFK--IQLENPHIINKSQVWVGVVPKGPDGAQ 532 (945)
T ss_pred cceeeeecCcchhHHHHhcccceeEEEecccccCchhHHHHh----CCccc--eeeecchhccccceEEEeeccCCCccc
Confidence 34899999999999998877 999999999999999999999 77654 678999999999999999999999999
Q ss_pred eEEeecccCChHHHHHHHHHHHHHHhccCCeEEEEcCccchHHHHHhhcCcccccccCCCCcchHHHHHhhhhcCCCCCC
Q psy1221 351 FDLTFENRTKGDTLKEIAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYMPDIEKTQEKPKLSGLQSFLKGVQENNPNLSK 430 (690)
Q Consensus 351 l~~~y~~R~~~~~~~~l~~~i~~~~~~~pgg~lvFFpSY~~l~~v~~~~~~~~~~~~~~k~sg~~~~L~~l~~~k~~~~e 430 (690)
++++|++|.+++++..+|+.|.++|++||.|+|||||||.+|+++..+|.+ ..+|+++...|.++.|
T Consensus 533 l~sty~nr~~~ey~~~lg~~i~~v~rvVp~G~L~FfPSY~vmdk~~tfw~~-------------~~~we~~~~vk~l~vE 599 (945)
T KOG1132|consen 533 LDSTYGNRFTPEYLSELGEAILNVARVVPYGLLIFFPSYPVMDKLITFWQN-------------RGLWERMEKVKKLVVE 599 (945)
T ss_pred cccccccccCHHHHHHHHHHHHHHHhhcccceEEeccchHHHHHHHHHHHc-------------chHHHHhhcccCceec
Confidence 999999999999999999999999999999999999999999999886621 1489999999989999
Q ss_pred CCCCCCCCCCccccccccCChHHHHHHHHHHHhccCCCceEEE-EECCCCCccEEEEEecCchhhHHHHHhhcceEEEeC
Q psy1221 431 PSEGGIEEAPSQVQEDQVRNPMLSVVTFLESLVNKNEDGRILV-TKNPELSKSHIKYILLNPANHFTDIVQDARSIIVAG 509 (690)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~s~l~~l~~fl~~l~~~~~~~~i~~-~~~~~~~~~~l~~~~ldp~~~~~~~~~~~~svil~S 509 (690)
|+.. ......+..|..++.+....|++++ +++++.+++ .+|.+ .++|+||.||
T Consensus 600 Pr~k--------------~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEG----------lDFsD--~~~RaVI~tG 653 (945)
T KOG1132|consen 600 PRSK--------------SEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEG----------LDFSD--DNGRAVIITG 653 (945)
T ss_pred cCCc--------------cchHHHHHHHHHHhhCccccceEEEEEecccccCC----------CCccc--cCCceeEEec
Confidence 9521 1334456778888877766778766 999998877 67777 7899999999
Q ss_pred CCCCchhh
Q psy1221 510 GTMEPVSE 517 (690)
Q Consensus 510 gTLsP~~~ 517 (690)
-...|..+
T Consensus 654 lPyP~~~D 661 (945)
T KOG1132|consen 654 LPYPPVMD 661 (945)
T ss_pred CCCCCCCC
Confidence 98876544
No 15
>PLN02530 histidine-tRNA ligase
Probab=99.90 E-value=2.4e-23 Score=233.78 Aligned_cols=180 Identities=24% Similarity=0.407 Sum_probs=139.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHhhhhhhhccHHHHHHHHHHHHHHHHHHHhCCCceEEEecCCCCCCCCcceeE
Q psy1221 4 EKNLSPEVADKIGEYVLKHGHVDLVENLLADEFLAKSKQAKEGLEAIKLLFHYCQIYGLKDTIVFDLSLARGLDYYTGVI 83 (690)
Q Consensus 4 ~~~l~~~~~~~l~~l~~~~G~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~l~~~g~~~~i~~d~~~~r~~~YYtG~v 83 (690)
.+|++.+.++.|..++.+. ..+.+.+. +. ...+++++|++++++|+.+|+..++.|||+++||++||||+|
T Consensus 272 ~~~~~~~~~~~l~~l~~~~-~~~~l~~~-----~~---~~~~~l~~L~~l~~~l~~~g~~~~i~~Dl~lvrgldYYTGiv 342 (487)
T PLN02530 272 TLGVSEEAIEGILDVLSLK-SLDDLEAL-----LG---ADSEAVADLKQLFSLAEAYGYQDWLVFDASVVRGLAYYTGIV 342 (487)
T ss_pred HcCCCHHHHHHHHHHHhcc-CHHHHHHH-----hh---hhHHHHHHHHHHHHHHHHcCCCccEEEecccccCccccCceE
Confidence 3456666666666666543 12222211 21 235799999999999999999888999999999999999999
Q ss_pred EEEEEcCCCcceEeeccchhhhhhhcCCCCCCCCccchhhhhhhhcccccccCcceeeeeHHHHHHHHHhhhhccCCccc
Q psy1221 84 YEAVLKDQAVGSVAGGGRYDNLVGMFDPKNKTTPCVAAKLLHEVQGLLETSCRSCREDIGVERLFSIIENRNAEQGVKVK 163 (690)
Q Consensus 84 Fe~~~~~~~~~~i~~GGRYD~L~~~f~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~ 163 (690)
||+|...+..++||+|||||+|++.||+ ++.|| |||++|++||..++++.+..+ .+
T Consensus 343 Fe~~~~~~~~~~I~gGGRYD~Li~~fgg--~~~pA-------------------vGFa~g~~~l~~~l~~~g~~p---~~ 398 (487)
T PLN02530 343 FEGFDRAGKLRAICGGGRYDRLLSTFGG--EDTPA-------------------CGFGFGDAVIVELLKEKGLLP---EL 398 (487)
T ss_pred EEEEecCCCcceeeecccHHHHHHHhCC--CCCCe-------------------eEEEEhHHHHHHHHHhcCCCC---CC
Confidence 9999854446799999999999999985 45675 559999999999987654321 23
Q ss_pred CCceeEEEEeCCccchHHHHhHhhhhhcCCc-ccCCcccccHHHHHhhhhhcCC
Q psy1221 164 TTSTQVYVASAQKNLVEPRMQLCHELWGGEK-TQEKPKLSGLQSFLKGVQENNP 216 (690)
Q Consensus 164 ~~~~~v~v~~~~~~~~~~~~~l~~~L~~~~i-~~~~~~~~~Lk~~lk~~~kl~~ 216 (690)
..+++|+|++.++.....++++++.||+.++ ++.+....++++.++.+++...
T Consensus 399 ~~~~dVlVi~~~~~~~~~A~~ia~~LR~~Gi~vevd~~~~~l~k~ik~A~k~g~ 452 (487)
T PLN02530 399 PHQVDDVVFALDEDLQGAAAGVASRLREKGRSVDLVLEPKKLKWVFKHAERIGA 452 (487)
T ss_pred CCCCcEEEEEcChHHHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHCCC
Confidence 4568999999988888899999999999654 4445666779999999988764
No 16
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.90 E-value=6.6e-23 Score=232.49 Aligned_cols=201 Identities=10% Similarity=0.097 Sum_probs=151.2
Q ss_pred ceEEEEECCCCCccEEEEEecCchhhHHHHH-hhcceEEEeCCCCCchh-----hHHHHhhccCCCCCCceEEEEeCCCc
Q psy1221 469 GRILVTKNPELSKSHIKYILLNPANHFTDIV-QDARSIIVAGGTMEPVS-----EFKDQLFGSLGVPESRIHHFSCGHVI 542 (690)
Q Consensus 469 ~~i~~~~~~~~~~~~l~~~~ldp~~~~~~~~-~~~~svil~SgTLsP~~-----~f~~~l~~~~Gl~~~~~~~~~~~~~f 542 (690)
.+++|.... .....|+..|++++..|++.+ +..+++|||||||+..+ +| +++...+|++.. .+..+|||
T Consensus 338 ~~~~~~~~~-~~~~~L~~~Pl~va~~l~~~~~~~~~~~I~TSATL~v~~~~~~~~F-~~f~~~lGL~~~---~l~~~SPF 412 (636)
T TIGR03117 338 SAVLQFSPD-RRFPSLIVGREDLGKVMGGLWKDVTHGAIIVSATLYLPDRFGQMSC-DYLKRVLSLPLS---RLDTPSPI 412 (636)
T ss_pred ceEEEEecC-CCceEEEEecccHHHHHHHHHhcCCCeEEEEccccccCCcCCCcCc-HHHHHhcCCCcc---ceeCCCCC
Confidence 456665422 223489999999999999977 46779999999998755 35 555555688633 78899999
Q ss_pred c--CCCee--EEEeecC-----CCCcceeeeccccC----ChHHHHHHHHHHHHhhhcccCcEEEEeccHHHHHHHHHHH
Q psy1221 543 P--KENIL--PLILCSG-----PTNRKFDLTFENRT----KGDTLKEIAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYM 609 (690)
Q Consensus 543 ~--~~~~~--~~~~~~~-----~~~~~~~~~~~~r~----~~~~~~~l~~~I~~l~~~~~gg~lVfF~Sy~~l~~v~~~~ 609 (690)
+ +.... .+++|.. |++..- .+.+.. ...+.+++++.|.+++....||+||+||||..|+.+++.+
T Consensus 413 d~~y~~qa~~~LyvP~~~~~~lP~p~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lvLfTS~~~~~~~~~~l 490 (636)
T TIGR03117 413 VAPWVRNAIPHLHVPNAKARFLRPVGKD--EQGDANLQEAERTWLENVSLSTAAILRKAQGGTLVLTTAFSHISAIGQLV 490 (636)
T ss_pred CchhHhcCceEEEEcCccccCCCCCCCC--cccchhhhcchhhHHHHHHHHHHHHHHHcCCCEEEEechHHHHHHHHHHH
Confidence 9 44333 6666632 333100 011110 1458888999999999999999999999999999999999
Q ss_pred HhcCchhHHHHHhcCceEEEcCCCchhHHHHHHHhhhcccC-CceEEEEeeCccccccccc--------CCCcceEEEEE
Q psy1221 610 RDNHFIERIARIAKKKVVFREPKKTSEVDKVLSDYGTSVEK-GGALMLSVIGGKLSEGLNF--------SDDLGRCVVVM 680 (690)
Q Consensus 610 ~~~~~~~~~~~~~~~~~i~~E~~~~~~~~~~l~~f~~~~~~-~~aiLfaV~gG~~sEGIDf--------~g~~~r~Viiv 680 (690)
... +. -++++|+.. .....++++|++.++. +++||||+ ++||||||+ +|+.|++|||.
T Consensus 491 ~~~--------l~--~~~l~qg~~-~~~~~l~~~f~~~~~~~~~~vL~gt--~sfweGvDv~~~~~~p~~G~~Ls~ViI~ 557 (636)
T TIGR03117 491 ELG--------IP--AEIVIQSEK-NRLASAEQQFLALYANGIQPVLIAA--GGAWTGIDLTHKPVSPDKDNLLTDLIIT 557 (636)
T ss_pred Hhh--------cC--CCEEEeCCC-ccHHHHHHHHHHhhcCCCCcEEEeC--CccccccccCCccCCCCCCCcccEEEEE
Confidence 742 22 578888753 2457899999986544 48999999 889999999 79999999999
Q ss_pred cCCCCCCCC
Q psy1221 681 CNSNPLRVP 689 (690)
Q Consensus 681 gLPfp~p~d 689 (690)
+||||+++|
T Consensus 558 kLPF~~~dp 566 (636)
T TIGR03117 558 CAPFGLNRS 566 (636)
T ss_pred eCCCCcCCh
Confidence 999997654
No 17
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=99.90 E-value=4.8e-23 Score=228.34 Aligned_cols=182 Identities=25% Similarity=0.436 Sum_probs=144.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHhhhhhhhccHHHHHHHHHHHHHHHHHHHhCCCceEEEecCCCCCCCCcceeE
Q psy1221 4 EKNLSPEVADKIGEYVLKHGHVDLVENLLADEFLAKSKQAKEGLEAIKLLFHYCQIYGLKDTIVFDLSLARGLDYYTGVI 83 (690)
Q Consensus 4 ~~~l~~~~~~~l~~l~~~~G~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~l~~~g~~~~i~~d~~~~r~~~YYtG~v 83 (690)
+.+++++.++.|..|+. .|+.+.+... + . ...++.+.+++++|+++.++|+.+|+..++.|||+++||++||||+|
T Consensus 204 ~~~l~~~~~~~l~~l~~-~~~~~~~~~~-~-~-~~~~~~~~~~l~~l~~l~~~l~~~g~~~~i~~Dl~~vr~l~YYtG~v 279 (423)
T PRK12420 204 ERGISEEMADTICNTVL-SCLQLSIADF-K-E-AFNNPLVAEGVNELQQLQQYLIALGINENCIFNPFLARGLTMYTGTV 279 (423)
T ss_pred HcCCCHHHHHHHHHHHh-ccChhhHHHH-H-H-hccCHHHHHHHHHHHHHHHHHHHhCCCCcEEEeccccCCCcccceeE
Confidence 46899999999999995 4555555443 2 1 34567889999999999999999999888999999999999999999
Q ss_pred EEEEEcCC-CcceEeeccchhhhhhhcCCCCCCCCccchhhhhhhhcccccccCcceeeeeHHHHHHHHHhhhhccCCcc
Q psy1221 84 YEAVLKDQ-AVGSVAGGGRYDNLVGMFDPKNKTTPCVAAKLLHEVQGLLETSCRSCREDIGVERLFSIIENRNAEQGVKV 162 (690)
Q Consensus 84 Fe~~~~~~-~~~~i~~GGRYD~L~~~f~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~ 162 (690)
||+|..+. ...+||+|||||+|++.|++++...|| ||||+++|||+.++...+.
T Consensus 280 Fe~~~~~~~~~~~i~~GGRYD~L~~~f~~~~~~~pA-------------------vGfa~~~~~l~~~l~~~~~------ 334 (423)
T PRK12420 280 YEIFLKDGSITSSIGSGGRYDNIIGAFRGDDMNYPT-------------------VGISFGLDVIYTALSQKET------ 334 (423)
T ss_pred EEEEecCCCccccccCCccHHHHHHHhCCCCCCCCc-------------------eeEEEcHHHHHHHHHhcCC------
Confidence 99999763 245899999999999999753334554 5699999999999886532
Q ss_pred cCCceeEEEEeCCccchHHHHhHhhhhhc-CCcc-cCCcccccHHHHHhhhhhcCC
Q psy1221 163 KTTSTQVYVASAQKNLVEPRMQLCHELWG-GEKT-QEKPKLSGLQSFLKGVQENNP 216 (690)
Q Consensus 163 ~~~~~~v~v~~~~~~~~~~~~~l~~~L~~-~~i~-~~~~~~~~Lk~~lk~~~kl~~ 216 (690)
...+++|+|++.++. ..++++++.||. .++. +.+....++.+.++.+.+.+.
T Consensus 335 ~~~~~dvlI~~~~~~--~~a~~ia~~Lr~~~Gi~ve~~~~~~~l~~~i~~A~~~g~ 388 (423)
T PRK12420 335 ISSTADVFIIPLGTE--LQCLQIAQQLRSTTGLKVELELAGRKLKKALNYANKENI 388 (423)
T ss_pred CCCCceEEEEEcCCH--HHHHHHHHHHHhhcCCeEEEecCCcCHHHHHHHHHHcCC
Confidence 224689999997643 468999999998 6544 446666788888888877654
No 18
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=99.89 E-value=9.3e-23 Score=223.53 Aligned_cols=177 Identities=22% Similarity=0.367 Sum_probs=142.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHhhhhhhhccHHHHHHHHHHHHHHHHHHHhCCCceEEEecCCCCCCCCcceeEEE
Q psy1221 6 NLSPEVADKIGEYVLKHGHVDLVENLLADEFLAKSKQAKEGLEAIKLLFHYCQIYGLKDTIVFDLSLARGLDYYTGVIYE 85 (690)
Q Consensus 6 ~l~~~~~~~l~~l~~~~G~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~l~~~g~~~~i~~d~~~~r~~~YYtG~vFe 85 (690)
+++++.++.|..++.++|+.+.+.. ++. +..+..+++++++|+++++.|+.+|+..++.|||+++||++||||+|||
T Consensus 201 ~l~~~~~~~l~~l~~~~g~~~~l~~-~~~--~~~~~~~~~~l~~L~~l~~~l~~~~~~~~i~~D~~lvrgl~YYtG~vFe 277 (391)
T PRK12292 201 DLSEELRDALLALPRLRGGREVLEE-ARK--LLPSLPIKRALDELEALAEALEKYGYGIPLSLDLGLLRHLDYYTGIVFE 277 (391)
T ss_pred cCCHHHHHHHHHHHHhcCCHHHHHH-HHH--hccChHHHHHHHHHHHHHHHHHHhCCCceEEEehhhccCCcCccceEEE
Confidence 5788999999999999996555544 432 3446677899999999999999999888899999999999999999999
Q ss_pred EEEcCCCcceEeeccchhhhhhhcCCCCCCCCccchhhhhhhhcccccccCcceeeeeHHHHHHHHHhhhhccCCcccCC
Q psy1221 86 AVLKDQAVGSVAGGGRYDNLVGMFDPKNKTTPCVAAKLLHEVQGLLETSCRSCREDIGVERLFSIIENRNAEQGVKVKTT 165 (690)
Q Consensus 86 ~~~~~~~~~~i~~GGRYD~L~~~f~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~ 165 (690)
+|.++. ..+||+|||||+|++.|| +..|| ||||+++|||..+ ... ....
T Consensus 278 ~~~~~~-~~~i~~GGRYD~L~~~fg---~~~pA-------------------vGfai~ldrl~~~-~~~-------~~~~ 326 (391)
T PRK12292 278 GYVDGV-GNPIASGGRYDDLLGRFG---RARPA-------------------TGFSLDLDRLLEL-QLE-------LPVE 326 (391)
T ss_pred EEECCC-CCcccCCcchhhHHHHcC---CCCCC-------------------ceEEeeHHHHHhh-ccc-------cccc
Confidence 999773 457999999999999996 34664 5699999999984 110 1224
Q ss_pred ceeEEEEeCCccchHHHHhHhhhhhcCCcc-cCCcccccHHHHHhhhhhcCC
Q psy1221 166 STQVYVASAQKNLVEPRMQLCHELWGGEKT-QEKPKLSGLQSFLKGVQENNP 216 (690)
Q Consensus 166 ~~~v~v~~~~~~~~~~~~~l~~~L~~~~i~-~~~~~~~~Lk~~lk~~~kl~~ 216 (690)
.++++|++.++.....++++++.||+.+.. .......++++.++.+++.+.
T Consensus 327 ~~~~~v~~~~~~~~~~a~~~~~~Lr~~G~~~~~~~~~~~~~~~~~~a~~~~~ 378 (391)
T PRK12292 327 ARKDLVIAPDSEALAAALAAAQELRKKGEIVVLALPGRNFEDAREYARDRQI 378 (391)
T ss_pred cCCcEEEEeCcccHHHHHHHHHHHHHcCCEEEEecCCCChHHHHHHHhhcCe
Confidence 467889988888888899999999996544 334555667888888887765
No 19
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.89 E-value=3e-22 Score=236.62 Aligned_cols=185 Identities=12% Similarity=0.119 Sum_probs=139.5
Q ss_pred EEEEECCC---CCccEEEEEecCchhhHHHHHhhcceEEEeCCCCCchhh--HHHHhhccCCCCCCceEEEEeCCCccCC
Q psy1221 471 ILVTKNPE---LSKSHIKYILLNPANHFTDIVQDARSIIVAGGTMEPVSE--FKDQLFGSLGVPESRIHHFSCGHVIPKE 545 (690)
Q Consensus 471 i~~~~~~~---~~~~~l~~~~ldp~~~~~~~~~~~~svil~SgTLsP~~~--f~~~l~~~~Gl~~~~~~~~~~~~~f~~~ 545 (690)
++|.+..+ .....|+..|++++ .+++++++.+++|+|||||+..+. |.+.+ |++. ....+.+ |+++
T Consensus 540 ~~W~e~~~~~~~~~~~l~~~pl~v~-~~~~~~~~~~~~i~tSATL~v~~~f~~~~~l----Gl~~--~~~~~~~--~~~~ 610 (820)
T PRK07246 540 DYWLESEKQSEKRVTYLNSASKAFT-HFSQLLPETCKTYFVSATLQISPRVSLADLL----GFEE--YLFHKIE--KDKK 610 (820)
T ss_pred eEEEEecCCCCcceeEEEeeeCcHH-HHHHHHhcCCeEEEEecccccCCCCcHHHHc----CCCc--cceecCC--CChH
Confidence 67744322 12247999999997 458888899999999999974333 44444 8853 2334444 5533
Q ss_pred CeeEEEee-cCCCCcceeeeccccCChHHHHHHHHHHHHhhhcccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcC
Q psy1221 546 NILPLILC-SGPTNRKFDLTFENRTKGDTLKEIAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKK 624 (690)
Q Consensus 546 ~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~l~~~I~~l~~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~ 624 (690)
+...++++ +.|+. ...++++|.+.+++.|.+++ .++|++|||||||++|+++++.+... .
T Consensus 611 ~~~~~~i~~~~p~~-------~~~~~~~~~~~~~~~i~~~~-~~~g~~LVLFtS~~~l~~v~~~l~~~-----------~ 671 (820)
T PRK07246 611 QDQLVVVDQDMPLV-------TETSDEVYAEEIAKRLEELK-QLQQPILVLFNSKKHLLAVSDLLDQW-----------Q 671 (820)
T ss_pred HccEEEeCCCCCCC-------CCCChHHHHHHHHHHHHHHH-hcCCCEEEEECcHHHHHHHHHHHhhc-----------C
Confidence 44444544 45433 12345789999999999988 78999999999999999999988732 2
Q ss_pred ceEEEcCCCchhHHHHHHHhhhcccCCceEEEEeeCcccccccccCCCcceEEEEEcCCCCCCCC
Q psy1221 625 KVVFREPKKTSEVDKVLSDYGTSVEKGGALMLSVIGGKLSEGLNFSDDLGRCVVVMCNSNPLRVP 689 (690)
Q Consensus 625 ~~i~~E~~~~~~~~~~l~~f~~~~~~~~aiLfaV~gG~~sEGIDf~g~~~r~ViivgLPfp~p~d 689 (690)
.+++.|+.++ ++.+++++|++. +++||||+ |+|||||||+|+.+.+|||+|||||+|+|
T Consensus 672 ~~~l~Qg~~~-~~~~l~~~F~~~---~~~vLlG~--~sFwEGVD~p~~~~~~viI~kLPF~~P~d 730 (820)
T PRK07246 672 VSHLAQEKNG-TAYNIKKRFDRG---EQQILLGL--GSFWEGVDFVQADRMIEVITRLPFDNPED 730 (820)
T ss_pred CcEEEeCCCc-cHHHHHHHHHcC---CCeEEEec--chhhCCCCCCCCCeEEEEEecCCCCCCCC
Confidence 4678887543 467899999985 78999999 99999999999888889999999999987
No 20
>KOG1131|consensus
Probab=99.88 E-value=2.8e-23 Score=219.89 Aligned_cols=244 Identities=19% Similarity=0.339 Sum_probs=189.6
Q ss_pred CcHHHHHHHHHHHhccCCCCeEEEEeCCCCC-----ccEEEEEecChhHHHHHHHhcccEEEEecccCCChhhhHHhhcc
Q psy1221 240 NPMLSVVTFLESLVNKNEDGRILVTKNPELS-----KSHIKYILLNPANHFTDIVQDARSIIVAGGTMEPVSEFKDQLFG 314 (690)
Q Consensus 240 ~~l~~~~~fl~~l~~~~~~~~v~~~~~~~~~-----~~~l~~~~ldps~~l~~~~~~~~svIl~SGTL~P~~~~~~~L~~ 314 (690)
.++..+.+| .+|...|..|+.++.|.-+.. ...|++.|+|+|.+++++++.++|||+|||||+|++.|.+.|
T Consensus 393 ~~l~~v~~f-aTlVstY~kGF~iIiEPfd~~~~tv~npil~~sClDaSiAikPVf~RFqsViITSGTlspldmyPk~l-- 469 (755)
T KOG1131|consen 393 GALKTVADF-ATLVSTYSKGFSIIIEPFDDRNPTVPNPILRFSCLDASIAIKPVFERFQSVIITSGTLSPLDMYPKIL-- 469 (755)
T ss_pred hHHHHHHHH-HHHHHHHhcCcEEEEcccccCCCCCCCCeeEEeecccchhhhHHHHhhheEEEecCcccccccCchhh--
Confidence 467888888 566678999999998864322 578999999999999999999999999999999999999998
Q ss_pred CCCCCCCceEeeecCCccCCCCeeEEEeecCCCCceeEEeecccCChHHHHHHHHHHHHHHhccCCeEEEEcCccchHHH
Q psy1221 315 SLGVPESRIHHFSCGHVIPKENILPLILCSGPTNRKFDLTFENRTKGDTLKEIAMTITNLCTIVPKGMVCFFPSYDYEAI 394 (690)
Q Consensus 315 ~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~y~~R~~~~~~~~l~~~i~~~~~~~pgg~lvFFpSY~~l~~ 394 (690)
++.+. ...+......++.+.++++++|.+...++++|..|+++..+.++|..+.+.++.+|||++||||||-||+.
T Consensus 470 --nf~pv--~~~s~~mtLaR~c~~PmiitrG~Dqv~iss~fe~r~d~~VvrnyG~llve~sk~vpdG~v~ff~sylYmes 545 (755)
T KOG1131|consen 470 --NFGPV--VGASFTMTLARNCLLPLIITRGNDQVAISSKFEARGDPSVVRNYGNLLVEMSKIVPDGIVCFFPSYLYMES 545 (755)
T ss_pred --ccCcc--cchhhheecccccccceeeecCCcchhhhhhhhhccChHHHhhcCcceeeecccCCCceEEEEehHHHHHH
Confidence 44333 33455555667788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCcccccccCCCCcchHHHHHhhhhcCCCCCCCCCCCCCCCCccccccccCChHHHHHHHHHHHhccCCCceEEE-
Q psy1221 395 VYNYMPDIEKTQEKPKLSGLQSFLKGVQENNPNLSKPSEGGIEEAPSQVQEDQVRNPMLSVVTFLESLVNKNEDGRILV- 473 (690)
Q Consensus 395 v~~~~~~~~~~~~~~k~sg~~~~L~~l~~~k~~~~e~~~~~~~~~~~~~~~~~~~s~l~~l~~fl~~l~~~~~~~~i~~- 473 (690)
+...|. -+.||+.+.+.|..+.|+++.. +.-..++++.+.. .+..|++++
T Consensus 546 iv~~w~-------------~~gil~ei~k~KL~fIetpD~~--------------ETs~al~ny~~aC--~~gRGavl~s 596 (755)
T KOG1131|consen 546 IVSRWY-------------EQGILDEIMKYKLLFIETPDFR--------------ETSLALANYRYAC--DNGRGAVLLS 596 (755)
T ss_pred HHHHHH-------------HHhHHHHHhhCceEEEeCCchh--------------hhHHHHHHHHHHh--cCCCCceEEE
Confidence 999662 2459999999999999884322 2234566676544 345677777
Q ss_pred EECCCCCccEEEEEecCchhhHHHHHhhcceEEEeCCCCCchhh-----HHHHhhccCCCCCC
Q psy1221 474 TKNPELSKSHIKYILLNPANHFTDIVQDARSIIVAGGTMEPVSE-----FKDQLFGSLGVPES 531 (690)
Q Consensus 474 ~~~~~~~~~~l~~~~ldp~~~~~~~~~~~~svil~SgTLsP~~~-----f~~~l~~~~Gl~~~ 531 (690)
+-+++.+++ ..|.. ...|.||+.+-+..-.++ =.++|..++++.+.
T Consensus 597 VargkVsEg----------idF~h--hyGR~ViM~gIP~qytesriLkarle~Lrd~~~irE~ 647 (755)
T KOG1131|consen 597 VARGKVSEG----------IDFDH--HYGREVIMEGIPYQYTESRILKARLEYLRDQFQIREN 647 (755)
T ss_pred EecCccccC----------ccccc--ccCceEEEEeccchhhHHHHHHHHHHHHHHHhccccc
Confidence 778887766 55554 467889999866532211 12455555555443
No 21
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=99.87 E-value=8.9e-22 Score=215.12 Aligned_cols=156 Identities=16% Similarity=0.242 Sum_probs=126.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHhhhhhhhccHHHHHHHHHHHHHHHHHHHhCCCceEEEecCCCCCCCCcceeE
Q psy1221 4 EKNLSPEVADKIGEYVLKHGHVDLVENLLADEFLAKSKQAKEGLEAIKLLFHYCQIYGLKDTIVFDLSLARGLDYYTGVI 83 (690)
Q Consensus 4 ~~~l~~~~~~~l~~l~~~~G~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~l~~~g~~~~i~~d~~~~r~~~YYtG~v 83 (690)
.++++.+.++.|..|+.++|+.+.+.++.+ .+...++.+++++++|+++++.++.++....+.+||+++||++||||+|
T Consensus 204 ~~~~~~~~~~~l~~L~~~~g~~~~l~~~~~-~~~~~~~~~~~~l~~L~~l~~~l~~~~~~~~~~~DlslvrgldYYTG~v 282 (392)
T PRK12421 204 NLGVGSDLRRMFYALARLNGGLEALDRALS-VLALQDAAIRQALDELKTLAAHLKNRWPELPVSIDLAELRGYHYHTGLV 282 (392)
T ss_pred hcCCCHHHHHHHHHHHHhcCCHHHHHHHHh-hcccCCHHHHHHHHHHHHHHHHHHhhCCCceEEEeeccccCCCCcCCCE
Confidence 467889999999999999999887776643 1122467889999999999999999865556999999999999999999
Q ss_pred EEEEEcCCCcceEeeccchhhhhhhcCCCCCCCCccchhhhhhhhcccccccCcceeeeeHHHHHHHHHhhhhccCCccc
Q psy1221 84 YEAVLKDQAVGSVAGGGRYDNLVGMFDPKNKTTPCVAAKLLHEVQGLLETSCRSCREDIGVERLFSIIENRNAEQGVKVK 163 (690)
Q Consensus 84 Fe~~~~~~~~~~i~~GGRYD~L~~~f~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~ 163 (690)
||+|.++ ...+||+|||||+|++.||. +.|| ||||+++|||..+++...
T Consensus 283 Fe~~~~~-~~~~i~~GGRYD~L~~~fg~---~~pA-------------------vGfai~lerL~~~l~~~~-------- 331 (392)
T PRK12421 283 FAAYIPG-RGQALARGGRYDGIGEAFGR---ARPA-------------------TGFSMDLKELLALQFLEE-------- 331 (392)
T ss_pred EEEEECC-CCCcccCCCCccchhHhhCC---CCCC-------------------ceEEeeHHHHHhhccccc--------
Confidence 9999987 45689999999999999974 4665 559999999998875321
Q ss_pred CCceeEEEEeCCccchHHHHhHhhhhhcCCcc
Q psy1221 164 TTSTQVYVASAQKNLVEPRMQLCHELWGGEKT 195 (690)
Q Consensus 164 ~~~~~v~v~~~~~~~~~~~~~l~~~L~~~~i~ 195 (690)
..++++++.++. ..+++++++||+.+..
T Consensus 332 --~~~~~~~~~~~~--~~~~~~a~~LR~~G~~ 359 (392)
T PRK12421 332 --EAGAILAPWGDD--PDLLAAIAELRQQGER 359 (392)
T ss_pred --CCceEEeecCCc--HHHHHHHHHHHhCCCE
Confidence 126788887644 3467899999986554
No 22
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=99.85 E-value=5.1e-21 Score=207.10 Aligned_cols=124 Identities=24% Similarity=0.413 Sum_probs=106.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHhhhhhhhccH-HHHHHHHHHHHHHHHHHHhCCC-ceEEEecCCCCCCCCcceeE
Q psy1221 6 NLSPEVADKIGEYVLKHGHVDLVENLLADEFLAKSK-QAKEGLEAIKLLFHYCQIYGLK-DTIVFDLSLARGLDYYTGVI 83 (690)
Q Consensus 6 ~l~~~~~~~l~~l~~~~G~~~~~~~~l~~~~~~~~~-~~~~~l~~l~~~~~~l~~~g~~-~~i~~d~~~~r~~~YYtG~v 83 (690)
+++++.++.|.+++.++|+++.+.+.++. +...++ .+++++++|++++++|+.+|+. +++.|||+++||++||||+|
T Consensus 245 ~~~~~~~~~l~~l~~~~g~~~~~~~~l~~-l~~~~~~~~~~al~~L~~l~~~l~~~g~~~~~v~~D~~~vrgl~YYTGiV 323 (373)
T PRK12295 245 RLPAEALAVLERFLAISGPPDAALAALRA-LAADAGLDLDAALDRFEARLAALAARGIDLERLRFSASFGRPLDYYTGFV 323 (373)
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHH-HhccChHHHHHHHHHHHHHHHHHHHcCCCcceEEEecccccCCccccceE
Confidence 89999999999999999999987777753 344456 7899999999999999999986 67999999999999999999
Q ss_pred EEEEEcCCCcceEeeccchhhhhhhcCCCCCCCCccchhhhhhhhcccccccCcceeeeeHHHHHHH
Q psy1221 84 YEAVLKDQAVGSVAGGGRYDNLVGMFDPKNKTTPCVAAKLLHEVQGLLETSCRSCREDIGVERLFSI 150 (690)
Q Consensus 84 Fe~~~~~~~~~~i~~GGRYD~L~~~f~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~ 150 (690)
||+|.++....+||+|||||+|++.||+ ++++|| |||++++|||..+
T Consensus 324 Fe~~~~~~~~~~I~~GGRYD~Li~~fg~-~~~~pA-------------------vGfai~~drl~~~ 370 (373)
T PRK12295 324 FEIRAAGNGDPPLAGGGRYDGLLTRLGA-GEPIPA-------------------VGFSIWLDRLAAL 370 (373)
T ss_pred EEEEECCCCCCcccCCcCHHHHHHHhCC-CCCCCe-------------------eEEEEcHHHHHhh
Confidence 9999977324689999999999999984 245664 5599999999754
No 23
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=99.85 E-value=9.5e-21 Score=209.91 Aligned_cols=147 Identities=23% Similarity=0.364 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHHHHHHhCCCceEEEecCCCCCCCCcceeEEEEEEcC-CCcceEeeccchhhhhhhcCCCCCCCCccch
Q psy1221 43 AKEGLEAIKLLFHYCQIYGLKDTIVFDLSLARGLDYYTGVIYEAVLKD-QAVGSVAGGGRYDNLVGMFDPKNKTTPCVAA 121 (690)
Q Consensus 43 ~~~~l~~l~~~~~~l~~~g~~~~i~~d~~~~r~~~YYtG~vFe~~~~~-~~~~~i~~GGRYD~L~~~f~~~~~~~~~~g~ 121 (690)
..+++++|++++++|+.+|+. +.+||+++||++||||+|||++... ...++||+|||||+|++.||+ +.+||+
T Consensus 229 ~~~~~~~l~~~~~~l~~~g~~--~~~Dl~lvRgldYYTG~vFE~~~~~~~~~~~i~gGGRYD~L~~~fg~--~~~Pav-- 302 (430)
T CHL00201 229 SLESTEHFYDVCTYLNLLNIP--YKINYKLVRGLDYYNDTAFEIKTLSSNGQDTICGGGRYDSLIHQLGG--PKTPAV-- 302 (430)
T ss_pred hHHHHHHHHHHHHHHHHcCCc--EEECcccccCCccccccEEEEEECCCCCcceeeeccchHHHHHHhCC--CCCCee--
Confidence 367999999999999999985 9999999999999999999999854 345789999999999999985 567765
Q ss_pred hhhhhhhcccccccCcceeeeeHHHHHHHHHhhhhccCCcccCCceeEEEEeCCccchHHHHhHhhhhhcCCcc-cCCcc
Q psy1221 122 KLLHEVQGLLETSCRSCREDIGVERLFSIIENRNAEQGVKVKTTSTQVYVASAQKNLVEPRMQLCHELWGGEKT-QEKPK 200 (690)
Q Consensus 122 ~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~l~~~L~~~~i~-~~~~~ 200 (690)
||++|+|||+.++++... .+....+|+|++.++.....++++++.||+.++. +.+..
T Consensus 303 -----------------Gfa~g~erl~~~l~~~~~-----~~~~~~~v~v~~~~~~~~~~a~~ia~~LR~~Gi~veid~~ 360 (430)
T CHL00201 303 -----------------GCAIGLERLLLIAKDNII-----LPKQSIDVYIATQGLKAQKKGWEIIQFLEKQNIKFELDLS 360 (430)
T ss_pred -----------------EEEecHHHHHHHHhcccc-----CCCCCCCEEEEEcCHHHHHHHHHHHHHHHhCCCeEEEeeC
Confidence 599999999999875311 1234578999998888888999999999996544 44555
Q ss_pred cccHHHHHhhhhhcCCC
Q psy1221 201 LSGLQSFLKGVQENNPN 217 (690)
Q Consensus 201 ~~~Lk~~lk~~~kl~~~ 217 (690)
..++++.++.+++....
T Consensus 361 ~~~l~k~~k~A~~~~~~ 377 (430)
T CHL00201 361 SSNFHKQIKQAGKKRAK 377 (430)
T ss_pred CCCHHHHHHHHHHcCCC
Confidence 67799999999887643
No 24
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=99.84 E-value=2.7e-21 Score=187.19 Aligned_cols=97 Identities=33% Similarity=0.567 Sum_probs=78.1
Q ss_pred HHHhhhcccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCchhHHHHHHHhhhcccCCceEEEEeeC
Q psy1221 581 ITNLCTIVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKTSEVDKVLSDYGTSVEKGGALMLSVIG 660 (690)
Q Consensus 581 I~~l~~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~~~~~~~l~~f~~~~~~~~aiLfaV~g 660 (690)
|.++++.+|||+|||||||++|+.+++.|+..... ....+|.|. ..+.++++++|++. +++|||||+|
T Consensus 1 i~~l~~~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~-------~~~~v~~q~--~~~~~~~l~~~~~~---~~~il~~v~~ 68 (167)
T PF13307_consen 1 ILELISAVPGGVLVFFPSYRRLEKVYERLKERLEE-------KGIPVFVQG--SKSRDELLEEFKRG---EGAILLAVAG 68 (167)
T ss_dssp HHHHHHCCSSEEEEEESSHHHHHHHHTT-TSS-E--------ETSCEEEST--CCHHHHHHHHHCCS---SSEEEEEETT
T ss_pred ChHHHhcCCCCEEEEeCCHHHHHHHHHHHHhhccc-------ccceeeecC--cchHHHHHHHHHhc---cCeEEEEEec
Confidence 67889999999999999999999999999965422 345899984 44679999999996 8999999999
Q ss_pred cccccccccCCCcceEEEEEcCCCCCCCC
Q psy1221 661 GKLSEGLNFSDDLGRCVVVMCNSNPLRVP 689 (690)
Q Consensus 661 G~~sEGIDf~g~~~r~ViivgLPfp~p~d 689 (690)
|+|||||||+|+.||+|||+|||||+|+|
T Consensus 69 g~~~EGiD~~~~~~r~vii~glPfp~~~d 97 (167)
T PF13307_consen 69 GSFSEGIDFPGDLLRAVIIVGLPFPPPSD 97 (167)
T ss_dssp SCCGSSS--ECESEEEEEEES-----TTC
T ss_pred ccEEEeecCCCchhheeeecCCCCCCCCC
Confidence 99999999999999999999999999976
No 25
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=99.84 E-value=2e-20 Score=206.15 Aligned_cols=147 Identities=30% Similarity=0.434 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCceEEEecCCCCCCCCcceeEEEEEEcCC-CcceEeeccchhhhhhhcCCCCCCCCccchh
Q psy1221 44 KEGLEAIKLLFHYCQIYGLKDTIVFDLSLARGLDYYTGVIYEAVLKDQ-AVGSVAGGGRYDNLVGMFDPKNKTTPCVAAK 122 (690)
Q Consensus 44 ~~~l~~l~~~~~~l~~~g~~~~i~~d~~~~r~~~YYtG~vFe~~~~~~-~~~~i~~GGRYD~L~~~f~~~~~~~~~~g~~ 122 (690)
.+++++|++++++|+.+|+. +.|||+++|+++||||+|||+|.++. ..++||+|||||+|++.||+ ...||
T Consensus 225 ~~~~~~l~~l~~~l~~~~~~--i~~dl~~~r~~~YYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~f~~--~~~~a---- 296 (397)
T TIGR00442 225 EESRAHFEELKELLDALGIP--YKIDPSLVRGLDYYTGTVFEFVTDELGAQGTICGGGRYDGLVEELGG--PPTPA---- 296 (397)
T ss_pred HHHHHHHHHHHHHHHHcCCC--EEECCccccCchhhcceEEEEEECCCCccceeeeccchHHHHHHhCC--CCCce----
Confidence 58999999999999999985 99999999999999999999999762 23689999999999999985 34554
Q ss_pred hhhhhhcccccccCcceeeeeHHHHHHHHHhhhhccCCcccCCceeEEEEeCCccchHHHHhHhhhhhcCCcc-cCCccc
Q psy1221 123 LLHEVQGLLETSCRSCREDIGVERLFSIIENRNAEQGVKVKTTSTQVYVASAQKNLVEPRMQLCHELWGGEKT-QEKPKL 201 (690)
Q Consensus 123 ~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~l~~~L~~~~i~-~~~~~~ 201 (690)
|||++++|||..++...+... ++..+++|+|++.++.....++++++.||+.++. +.....
T Consensus 297 ---------------vGfs~~~~~l~~~l~~~~~~~---~~~~~~~vlV~~~~~~~~~~~~~i~~~Lr~~gi~v~~~~~~ 358 (397)
T TIGR00442 297 ---------------VGFAIGIERLLLLLEELGLEP---PEESSPDVYVVPLGEEAELEALKLAQKLRKAGIRVEVDLGG 358 (397)
T ss_pred ---------------EEeeecHHHHHHHHHhcCCCC---CCCCCCcEEEEEeCHHHHHHHHHHHHHHHhCCCeEEEeCCC
Confidence 669999999999998754321 2346689999998888888999999999996544 445566
Q ss_pred ccHHHHHhhhhhcCC
Q psy1221 202 SGLQSFLKGVQENNP 216 (690)
Q Consensus 202 ~~Lk~~lk~~~kl~~ 216 (690)
.++++.++.+++...
T Consensus 359 ~~l~k~~~~a~~~g~ 373 (397)
T TIGR00442 359 RKLKKQLKYADKLGA 373 (397)
T ss_pred CCHHHHHHHHHHcCC
Confidence 788999998887664
No 26
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=99.84 E-value=1.1e-20 Score=201.40 Aligned_cols=125 Identities=32% Similarity=0.551 Sum_probs=108.3
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHhhhhhhhccHHHHHHHHHHHHHHHHHHHhCCCceEEEecCCCCCCCCccee
Q psy1221 3 GEKNLSPEVADKIGEYVLKHGHVDLVENLLADEFLAKSKQAKEGLEAIKLLFHYCQIYGLKDTIVFDLSLARGLDYYTGV 82 (690)
Q Consensus 3 ~~~~l~~~~~~~l~~l~~~~G~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~l~~~g~~~~i~~d~~~~r~~~YYtG~ 82 (690)
++++++++.++.|..++.+.|+++.+.+.++. +..++.+.+++++|++++++|+.+|+...+.||++++|+++||||+
T Consensus 189 ~~~~l~~~~~~~l~~l~~~~g~~~~~l~~l~~--~~~~~~~~~~l~~l~~~~~~l~~~~~~~~i~~D~~~~r~~~YYtGi 266 (314)
T TIGR00443 189 AELGLDPEVRERLLALPRLRGDGEEVLEEARA--LAGSETAEAALDELEAVLELLEARGVEEYISLDLGLVRGYHYYTGL 266 (314)
T ss_pred HhcCCCHHHHHHHHHHHHhcCChHHHHHHHHH--hccCHHHHHHHHHHHHHHHHHHHhCCCCeEEEecccccCCCCccce
Confidence 45788999999999999999996666666653 4456788899999999999999999987899999999999999999
Q ss_pred EEEEEEcCCCcceEeeccchhhhhhhcCCCCCCCCccchhhhhhhhcccccccCcceeeeeHHHHHHHHH
Q psy1221 83 IYEAVLKDQAVGSVAGGGRYDNLVGMFDPKNKTTPCVAAKLLHEVQGLLETSCRSCREDIGVERLFSIIE 152 (690)
Q Consensus 83 vFe~~~~~~~~~~i~~GGRYD~L~~~f~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~ 152 (690)
|||+|..+ ...+||+|||||+|++.|| +.+|| |||++++|||..++.
T Consensus 267 vFe~~~~~-~~~~i~~GGRYD~L~~~fg---~~~~A-------------------vGfa~~~d~l~~~l~ 313 (314)
T TIGR00443 267 IFEGYAPG-LGAPIAGGGRYDNLLGRFG---RPLPA-------------------TGFALNLERLLEALT 313 (314)
T ss_pred EEEEEECC-CCCcccCCccHHHHHHHcC---CCCCC-------------------ceEEecHHHHHHHhc
Confidence 99999976 4568999999999999997 34665 559999999998764
No 27
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=99.79 E-value=4.1e-19 Score=196.78 Aligned_cols=142 Identities=32% Similarity=0.482 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCceEEEecCCCCCCCCcceeEEEEEEcC-CCcceEeeccchhhhhhhcCCCCCCCCccchh
Q psy1221 44 KEGLEAIKLLFHYCQIYGLKDTIVFDLSLARGLDYYTGVIYEAVLKD-QAVGSVAGGGRYDNLVGMFDPKNKTTPCVAAK 122 (690)
Q Consensus 44 ~~~l~~l~~~~~~l~~~g~~~~i~~d~~~~r~~~YYtG~vFe~~~~~-~~~~~i~~GGRYD~L~~~f~~~~~~~~~~g~~ 122 (690)
..++++|+.+.++|+.+|+. +.|||+++||++||||+|||++.++ +.+++||+|||||+|++.||+ +..||
T Consensus 226 ~~~~~~l~~l~~~l~~~~~~--i~~Dl~~~r~l~YYtG~vFe~~~~~~g~~~~i~~GGRYD~L~~~f~~--~~~pa---- 297 (412)
T PRK00037 226 EESKEHFEELKELLDALGIP--YVIDPRLVRGLDYYTGTVFEFVTDDLGAQGTVCGGGRYDGLVEQFGG--PPTPA---- 297 (412)
T ss_pred HHHHHHHHHHHHHHHHcCCC--EEECCCcccChhhccceEEEEEECCCCccceeeeccchhHHHHHhCC--CCCce----
Confidence 46788999999999999985 9999999999999999999999975 234689999999999999985 45665
Q ss_pred hhhhhhcccccccCcceeeeeHHHHHHHHHhhhhccCCcccCCceeEEEEeCCccchHHHHhHhhhhhcCCc-ccCCccc
Q psy1221 123 LLHEVQGLLETSCRSCREDIGVERLFSIIENRNAEQGVKVKTTSTQVYVASAQKNLVEPRMQLCHELWGGEK-TQEKPKL 201 (690)
Q Consensus 123 ~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~l~~~L~~~~i-~~~~~~~ 201 (690)
|||++++|||+.++.+.+. .+++|+|++.++.....++++++.||..++ ++.+...
T Consensus 298 ---------------vGfs~~le~l~~~l~~~~~--------~~~~vlI~~~~~~~~~~a~~i~~~Lr~~Gi~v~i~~~~ 354 (412)
T PRK00037 298 ---------------VGFAIGVERLLLLLEELGE--------EPVDVYVVPLGEDAELAALKLAEKLRAAGIRVELDYGG 354 (412)
T ss_pred ---------------EEEEEcHHHHHHHHHhcCC--------CCCCEEEEEeChHHHHHHHHHHHHHHHCCCeEEEeCCC
Confidence 5599999999998876531 467899999887777789999999999544 4444444
Q ss_pred ccHHHHHhhhhhcCC
Q psy1221 202 SGLQSFLKGVQENNP 216 (690)
Q Consensus 202 ~~Lk~~lk~~~kl~~ 216 (690)
.++.+.++.+++.+.
T Consensus 355 ~~~~~~~~~a~~~gi 369 (412)
T PRK00037 355 RKLKKQFKYADKSGA 369 (412)
T ss_pred CCHHHHHHHHHHcCC
Confidence 678888888877654
No 28
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A ....
Probab=99.78 E-value=2.8e-19 Score=190.67 Aligned_cols=119 Identities=39% Similarity=0.628 Sum_probs=103.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHhhhhhhhccHHHHHHHHHHHHHHHHHHHhC-CCceEEEecCCCCCCCCccee
Q psy1221 4 EKNLSPEVADKIGEYVLKHGHVDLVENLLADEFLAKSKQAKEGLEAIKLLFHYCQIYG-LKDTIVFDLSLARGLDYYTGV 82 (690)
Q Consensus 4 ~~~l~~~~~~~l~~l~~~~G~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~l~~~g-~~~~i~~d~~~~r~~~YYtG~ 82 (690)
+.+++++.++.|..|+.+.|+.+.+.++++ .+..++.+++++++|+++.+.++.+| ...+|.+||+++|+++||||+
T Consensus 192 ~~~l~~~~~~~l~~l~~~~g~~~~l~~~~~--~~~~~~~~~~~~~~L~~l~~~l~~~~~~~~~i~~D~~~~r~~~YYtG~ 269 (311)
T PF13393_consen 192 ELGLSSESLEILDKLPELEGDPEALEELLE--SLPSSPALQEALEELEELLKLLEALGYPSIKIIFDLSLVRGLDYYTGI 269 (311)
T ss_dssp HTTTTHHHHHHHHHHHHHHHSHHHHHHHHH--HHTCSCHHHHHHHHHHHHHHHHHHCTHTTTTEEEETT-GTSSTTEESE
T ss_pred ccccchhhhhhhhccccccchHHHHHHHHH--HHhhhhhhHHHHHHHHHHHHHHHHhcccCceEEEChhhccchhhcCCE
Confidence 467899999999999999999999998874 25666778999999999999999998 567799999999999999999
Q ss_pred EEEEEEcCCCcceEeeccchhhhhhhcCCCCCCCCccchhhhhhhhcccccccCcceeeeeHHHH
Q psy1221 83 IYEAVLKDQAVGSVAGGGRYDNLVGMFDPKNKTTPCVAAKLLHEVQGLLETSCRSCREDIGVERL 147 (690)
Q Consensus 83 vFe~~~~~~~~~~i~~GGRYD~L~~~f~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~l 147 (690)
|||++.++. ..+||+|||||+|++.|| +..|| |||+|++|||
T Consensus 270 vFe~~~~~~-~~~ia~GGRYD~L~~~fg---~~~~A-------------------vGfai~ld~L 311 (311)
T PF13393_consen 270 VFEVYAPGR-GSPIAGGGRYDNLLEQFG---KPIPA-------------------VGFAIGLDRL 311 (311)
T ss_dssp EEEEEETTS-SSESEEEEEETTHHHHTT---SS-EE-------------------EEEEEEHHHH
T ss_pred EEEEEEcCC-CceEecccChhHHHHHhC---CCCce-------------------EEEEEEeccC
Confidence 999999874 459999999999999996 34564 6699999997
No 29
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=99.75 E-value=2.1e-18 Score=161.83 Aligned_cols=85 Identities=38% Similarity=0.640 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCchhHHHHHHHhhhcccCCceEEEEeeCcccccccccCCCcceEEE
Q psy1221 599 YDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKTSEVDKVLSDYGTSVEKGGALMLSVIGGKLSEGLNFSDDLGRCVV 678 (690)
Q Consensus 599 y~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~~~~~~~l~~f~~~~~~~~aiLfaV~gG~~sEGIDf~g~~~r~Vi 678 (690)
|++|+++++.|++.+.+ ...+++|+|+++..+.++++++|++.++.+|+|||||+||+|||||||+|+.||+||
T Consensus 1 y~~m~~v~~~~~~~~~~------~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vi 74 (142)
T smart00491 1 YRYLEQVVEYWKENGIL------EINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVI 74 (142)
T ss_pred ChHHHHHHHHHHhcCcc------ccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEE
Confidence 78999999999975432 235789999988777789999999876445799999999999999999999999999
Q ss_pred EEcCCCCCCCC
Q psy1221 679 VMCNSNPLRVP 689 (690)
Q Consensus 679 ivgLPfp~p~d 689 (690)
|+|||||+|+|
T Consensus 75 i~glPfp~~~d 85 (142)
T smart00491 75 IVGIPFPNPDS 85 (142)
T ss_pred EEecCCCCCCC
Confidence 99999999986
No 30
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=99.74 E-value=7.9e-18 Score=174.98 Aligned_cols=86 Identities=44% Similarity=0.765 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHHhCCCceEEEecCCCCCCCCcceeEEEEEEcCC-CcceEeeccchhhhhhhcCCCCCCCCccchhh
Q psy1221 45 EGLEAIKLLFHYCQIYGLKDTIVFDLSLARGLDYYTGVIYEAVLKDQ-AVGSVAGGGRYDNLVGMFDPKNKTTPCVAAKL 123 (690)
Q Consensus 45 ~~l~~l~~~~~~l~~~g~~~~i~~d~~~~r~~~YYtG~vFe~~~~~~-~~~~i~~GGRYD~L~~~f~~~~~~~~~~g~~~ 123 (690)
+++++|+++.+.|+.+|+..++.+||+++|+++||||+|||+|.++. ...+||+|||||+|++.|++ +..||
T Consensus 174 ~~l~~l~~l~~~l~~~~~~~~i~~d~~~~r~~~YYtG~vF~~~~~~~~~~~~i~~GGRYD~L~~~f~~--~~~~a----- 246 (261)
T cd00773 174 EALAHLEKLLDYLEALGVDIKYSIDLSLVRGLDYYTGIVFEAVADGLGAQGSIAGGGRYDGLLEEFGG--EDVPA----- 246 (261)
T ss_pred HHHHHHHHHHHHHHHcCCCceEEEcCccccCCcccCceEEEEEECCCCccCeEeeccCHHHHHHHhCC--CCCCe-----
Confidence 89999999999999999877899999999999999999999999873 35799999999999999854 34564
Q ss_pred hhhhhcccccccCcceeeeeHHHHHHHH
Q psy1221 124 LHEVQGLLETSCRSCREDIGVERLFSII 151 (690)
Q Consensus 124 ~~~~~~~~~~~~~~~g~~~~~~~l~~~~ 151 (690)
|||++++|||..++
T Consensus 247 --------------vGfa~~~d~l~~~~ 260 (261)
T cd00773 247 --------------VGFAIGLERLLLAL 260 (261)
T ss_pred --------------EEEEEcHHHHHHhh
Confidence 66999999999876
No 31
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=99.66 E-value=2e-16 Score=148.09 Aligned_cols=84 Identities=24% Similarity=0.419 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCchhHHHHHHHhhhcccCCceEEEEeeCcccccccccCCCcceEEE
Q psy1221 599 YDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKTSEVDKVLSDYGTSVEKGGALMLSVIGGKLSEGLNFSDDLGRCVV 678 (690)
Q Consensus 599 y~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~~~~~~~l~~f~~~~~~~~aiLfaV~gG~~sEGIDf~g~~~r~Vi 678 (690)
|++|++++++|++.+.+ .+|.+.+++|.|+.+..+.++++++|++++ +++|||||++ |||||||+|+.+|+||
T Consensus 1 y~~m~~v~~~~~~~~~~---~~l~~~~~i~~e~~~~~~~~~~l~~f~~~~--~~~iL~~~~~--~~EGiD~~g~~~r~vi 73 (141)
T smart00492 1 YQYMESFVQYWKENGIL---ENINKNLLLLVQGEDGKETGKLLEKYVEAC--ENAILLATAR--FSEGVDFPGDYLRAVI 73 (141)
T ss_pred CHHHHHHHHHHHHcCch---hhHhcCCeEEEeCCChhHHHHHHHHHHHcC--CCEEEEEccc--eecceecCCCCeeEEE
Confidence 78999999999998877 888889999999987777899999999873 3599999965 9999999999999999
Q ss_pred EEcCCCCCCCC
Q psy1221 679 VMCNSNPLRVP 689 (690)
Q Consensus 679 ivgLPfp~p~d 689 (690)
|+|||||+|+|
T Consensus 74 i~glPfp~~~d 84 (141)
T smart00492 74 IDGLPFPYPDS 84 (141)
T ss_pred EEecCCCCCCC
Confidence 99999999986
No 32
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=99.60 E-value=4.3e-15 Score=155.26 Aligned_cols=100 Identities=15% Similarity=0.255 Sum_probs=68.5
Q ss_pred HHHHHHHHhcCCHHHHHHHhhhhhhhccHHHHHHHHHHHHHHHHHHHhCCCceEEEecCCCCCCCCcceeEEEEEEcCCC
Q psy1221 13 DKIGEYVLKHGHVDLVENLLADEFLAKSKQAKEGLEAIKLLFHYCQIYGLKDTIVFDLSLARGLDYYTGVIYEAVLKDQA 92 (690)
Q Consensus 13 ~~l~~l~~~~G~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~l~~~g~~~~i~~d~~~~r~~~YYtG~vFe~~~~~~~ 92 (690)
+.+.+++.+.|+ +.+.++.+ . .+..+++++++| .+.++.+|+. .+.+||+++||++||||+|||+|.++
T Consensus 181 ~~l~~l~~~~~~-~~~~~~~~---~-~~~~~~~~l~~l---~~~l~~l~~~-~~~~Dl~~vrgl~YYTGivFe~~~~~-- 249 (281)
T PRK12293 181 PWLNKLVRIKTL-EDLDEVIE---L-VPDEIKEELEKL---KELAESIKYE-NLVIAPLYYAKMRYYDDLFFRFFDGN-- 249 (281)
T ss_pred HHHHHHHhcCCH-HHHHHHHh---h-CCHHHHHHHHHH---HHHHHHcCCC-cEEEccccccCCCCccceEEEEEECC--
Confidence 334555555543 33443321 1 123444444444 4555666664 39999999999999999999999974
Q ss_pred cceEeeccchhhhhhhcCCCCCCCCccchhhhhhhhcccccccCcceeeeeHHHHHHHHH
Q psy1221 93 VGSVAGGGRYDNLVGMFDPKNKTTPCVAAKLLHEVQGLLETSCRSCREDIGVERLFSIIE 152 (690)
Q Consensus 93 ~~~i~~GGRYD~L~~~f~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~ 152 (690)
.+||+|||||+ ...|| ||||+++|||..+|.
T Consensus 250 -~~i~~GGRYD~---------~~~PA-------------------vGfa~~ld~l~~~l~ 280 (281)
T PRK12293 250 -STLASGGNYEI---------DGISS-------------------SGFALYTDNLIEILL 280 (281)
T ss_pred -ceeccccCCCC---------CCCCc-------------------ceEEeeHHHHHHHhh
Confidence 28999999992 23575 459999999998764
No 33
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.49 E-value=2e-13 Score=164.64 Aligned_cols=135 Identities=13% Similarity=0.212 Sum_probs=111.5
Q ss_pred ccCCCCeEEEEeCCCC---CccEEEEEecChhHHHHH-HHhcccEEEEecccCC---ChhhhHHhhccCCCCCCCceEee
Q psy1221 254 NKNEDGRILVTKNPEL---SKSHIKYILLNPANHFTD-IVQDARSIIVAGGTME---PVSEFKDQLFGSLGVPESRIHHF 326 (690)
Q Consensus 254 ~~~~~~~v~~~~~~~~---~~~~l~~~~ldps~~l~~-~~~~~~svIl~SGTL~---P~~~~~~~L~~~~g~~~~~~~~~ 326 (690)
...++++++|.+.+.. ....|+..|+||+..+.+ ++++++++|||||||+ +++||.+.| |+++.....+
T Consensus 630 ~~~~~~~v~w~e~~~~~~~~~~~l~~~pld~~~~l~~~l~~~~~~~iltSATL~~~~~f~~~~~~l----Gl~~~~~~~~ 705 (928)
T PRK08074 630 FEEDPDYVTWIEIDAKGAINATRLYAQPVEVAERLADEFFAKKKSVILTSATLTVNGSFDYIIERL----GLEDFYPRTL 705 (928)
T ss_pred hcCCCCeEEEEEecCCCCCceEEEEEeeccHHHHHHHHHHhcCCcEEEEeeecccCCCcHHHHHhc----CCCCCCccEE
Confidence 3445678999976522 356799999999999988 6699999999999999 588999999 8865444567
Q ss_pred ecCCccC-CCCeeEEEeecCCCCceeEEeecccCChHHHHHHHHHHHHHHhccCCeEEEEcCccchHHHHHhhc
Q psy1221 327 SCGHVIP-KENILPLILCSGPTNRKFDLTFENRTKGDTLKEIAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYM 399 (690)
Q Consensus 327 ~~~~~~~-~~~~~~~v~~~~~~~~~l~~~y~~R~~~~~~~~l~~~i~~~~~~~pgg~lvFFpSY~~l~~v~~~~ 399 (690)
..++||+ ++|..++++++.|+.. .++++++.+.+++.|.+++..++||+|||||||++|++|++.+
T Consensus 706 ~~~SpF~~~~q~~l~vp~d~p~~~-------~~~~~~~~~~la~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l 772 (928)
T PRK08074 706 QIPSPFSYEEQAKLMIPTDMPPIK-------DVPIEEYIEEVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNL 772 (928)
T ss_pred EeCCCCCHHHhcEEEeecCCCCCC-------CCChHHHHHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHH
Confidence 7888899 6888898887666443 2344788999999999999999999999999999999999977
No 34
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism]
Probab=99.47 E-value=1.1e-13 Score=147.90 Aligned_cols=153 Identities=21% Similarity=0.313 Sum_probs=120.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHhhhhhhhccHHHHHHHHHHHHHHHHHHHhCCCceEEEecCCCCCCCCcceeEE
Q psy1221 5 KNLSPEVADKIGEYVLKHGHVDLVENLLADEFLAKSKQAKEGLEAIKLLFHYCQIYGLKDTIVFDLSLARGLDYYTGVIY 84 (690)
Q Consensus 5 ~~l~~~~~~~l~~l~~~~G~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~l~~~g~~~~i~~d~~~~r~~~YYtG~vF 84 (690)
.+++++..+.+..+++++|..+++..+.. .+..-.....++++++.+.+....++ .++.+|++++|+++||||++|
T Consensus 199 ~~~~~~~~~~l~~l~~l~gg~e~l~~~~~--~l~~~~~~~~al~~~~~l~di~~~~~--e~i~lDLg~l~~~~YyTg~~F 274 (390)
T COG3705 199 APLSPELRGRLSELLALLGGREVLERARG--LLDELMAQGIALNEGRALADIARRLI--EKIALDLGRLRHFDYYTGLVF 274 (390)
T ss_pred cCCChhhhHHHHHHHHHhCCHHHHHHHHH--hhhhhhhhhhhhhhhhhHHHHHhccc--hhheehhhcccccchhhceee
Confidence 56788899999999999999998888753 23333333789999999999999854 449999999999999999999
Q ss_pred EEEEcCCCcceEeeccchhhhhhhcCCCCCCCCccchhhhhhhhcccccccCcceeeeeHHHHHHHHHhhhhccCCcccC
Q psy1221 85 EAVLKDQAVGSVAGGGRYDNLVGMFDPKNKTTPCVAAKLLHEVQGLLETSCRSCREDIGVERLFSIIENRNAEQGVKVKT 164 (690)
Q Consensus 85 e~~~~~~~~~~i~~GGRYD~L~~~f~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~ 164 (690)
++|..+. ..++++|||||+|.+.|++ ..|++| |++.+|.|..... ....
T Consensus 275 ~ay~~~~-~~al~~GGRYd~l~~~f~~---~~patG-------------------f~~~l~~l~~~~~--------~~~~ 323 (390)
T COG3705 275 LAYADGL-GDALASGGRYDGLLGLFGR---AAPATG-------------------FALRLDALAQGGL--------PLEE 323 (390)
T ss_pred eeeeccc-cchhhcccchhhhhhhcCc---cccchh-------------------hHhhHHHHHhcCC--------Cccc
Confidence 9998874 5699999999999999995 357655 9999999987111 1233
Q ss_pred CceeEEEEeCCccchHHHHhHhhhhhcC
Q psy1221 165 TSTQVYVASAQKNLVEPRMQLCHELWGG 192 (690)
Q Consensus 165 ~~~~v~v~~~~~~~~~~~~~l~~~L~~~ 192 (690)
...++.++...+.......++++.++..
T Consensus 324 ~~~~~~f~~~~~~~~~~~~e~~~~~r~~ 351 (390)
T COG3705 324 RRYAALFGRELDYYTGAAFEAAQALRLA 351 (390)
T ss_pred chhhhccCccchhhHHHHHHHHHHhccc
Confidence 4556667666665567778888888853
No 35
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.45 E-value=6.5e-13 Score=159.49 Aligned_cols=131 Identities=20% Similarity=0.326 Sum_probs=107.5
Q ss_pred CCeEEEEeCCCC---CccEEEEEecChhHHHHH-HHhcccEEEEecccCC---ChhhhHHhhccCCCCCCCceEeeecCC
Q psy1221 258 DGRILVTKNPEL---SKSHIKYILLNPANHFTD-IVQDARSIIVAGGTME---PVSEFKDQLFGSLGVPESRIHHFSCGH 330 (690)
Q Consensus 258 ~~~v~~~~~~~~---~~~~l~~~~ldps~~l~~-~~~~~~svIl~SGTL~---P~~~~~~~L~~~~g~~~~~~~~~~~~~ 330 (690)
+..++|.+.+.. ....|+..|+||+..+.+ ++++++++|||||||+ |+++|.+.| |+++.....+. ++
T Consensus 557 ~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~l----Gl~~~~~~~~~-~s 631 (850)
T TIGR01407 557 EGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLL----GLTDVHFNTIE-PT 631 (850)
T ss_pred cCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhc----CCCccccceec-CC
Confidence 456888875422 345789999999988866 8899999999999999 799999999 88655444555 88
Q ss_pred ccC-CCCeeEEEeecCCCCceeEEeecccCChHHHHHHHHHHHHHHhccCCeEEEEcCccchHHHHHhhcC
Q psy1221 331 VIP-KENILPLILCSGPTNRKFDLTFENRTKGDTLKEIAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYMP 400 (690)
Q Consensus 331 ~~~-~~~~~~~v~~~~~~~~~l~~~y~~R~~~~~~~~l~~~i~~~~~~~pgg~lvFFpSY~~l~~v~~~~~ 400 (690)
||+ ++|..++++++.|... .++.+++.+.+++.|.+++...+|++|||||||.+|++++..+.
T Consensus 632 pf~~~~~~~l~v~~d~~~~~-------~~~~~~~~~~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~ 695 (850)
T TIGR01407 632 PLNYAENQRVLIPTDAPAIQ-------NKSLEEYAQEIASYIIEITAITSPKILVLFTSYEMLHMVYDMLN 695 (850)
T ss_pred CCCHHHcCEEEecCCCCCCC-------CCChHHHHHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHh
Confidence 999 8999999887665432 23447788999999999999999999999999999999998773
No 36
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.45 E-value=8e-13 Score=154.81 Aligned_cols=127 Identities=14% Similarity=0.137 Sum_probs=101.8
Q ss_pred CeEEEEeCCC---CCccEEEEEecChhHHHHH-HHhcccEEEEecccCCC---hhhhHHhhccCCCCCC-CceEeeecCC
Q psy1221 259 GRILVTKNPE---LSKSHIKYILLNPANHFTD-IVQDARSIIVAGGTMEP---VSEFKDQLFGSLGVPE-SRIHHFSCGH 330 (690)
Q Consensus 259 ~~v~~~~~~~---~~~~~l~~~~ldps~~l~~-~~~~~~svIl~SGTL~P---~~~~~~~L~~~~g~~~-~~~~~~~~~~ 330 (690)
..++|.+... .....|+..|+||+..|+. ++++++++|||||||+| +++|.+.| |+++ .....+..++
T Consensus 419 ~~v~Wie~~~~~~~~~~~l~~~Pl~~~~~l~~~l~~~~~~vIltSATL~~~~~f~~~~~~l----GL~~~~~~~~~~~~S 494 (697)
T PRK11747 419 PMARWITREERDGQGDYLFHASPIRVGDQLERLLWSRAPGAVLTSATLRSLNSFDRFQEQS----GLPEKDGDRFLALPS 494 (697)
T ss_pred CceEEEEeccCCCCceEEEEEecCCHHHHHHHHHHhhCCEEEEEeeeCCCCCchHHHHHHc----CCCCCCCceEEEcCC
Confidence 4689998642 2467899999999999975 88999999999999998 67888888 8864 2345677888
Q ss_pred ccC-CCCeeEEEeecCCCCceeEEeecccCChHHHHHHHHHHHHHHhccCCeEEEEcCccchHHHHHhhc
Q psy1221 331 VIP-KENILPLILCSGPTNRKFDLTFENRTKGDTLKEIAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYM 399 (690)
Q Consensus 331 ~~~-~~~~~~~v~~~~~~~~~l~~~y~~R~~~~~~~~l~~~i~~~~~~~pgg~lvFFpSY~~l~~v~~~~ 399 (690)
||+ ++|..++++...+ ..|+++++.+.+++.|.+++. ++||+|||||||.+|+++++.+
T Consensus 495 pF~~~~q~~l~vp~~~~---------~p~~~~~~~~~~~~~i~~l~~-~~gg~LVlFtSy~~l~~v~~~l 554 (697)
T PRK11747 495 PFDYPNQGKLVIPKMRA---------EPDNEEAHTAEMAEFLPELLE-KHKGSLVLFASRRQMQKVADLL 554 (697)
T ss_pred CCCHHHccEEEeCCCCC---------CCCCcHHHHHHHHHHHHHHHh-cCCCEEEEeCcHHHHHHHHHHH
Confidence 899 4666665543211 123457899999999999999 9999999999999999999876
No 37
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=99.43 E-value=1.6e-13 Score=142.07 Aligned_cols=68 Identities=22% Similarity=0.386 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCceEEEecCCCCCCCCcceeEEEEEEcCCCcceEeeccchhhhhhhcCC
Q psy1221 42 QAKEGLEAIKLLFHYCQIYGLKDTIVFDLSLARGLDYYTGVIYEAVLKDQAVGSVAGGGRYDNLVGMFDP 111 (690)
Q Consensus 42 ~~~~~l~~l~~~~~~l~~~g~~~~i~~d~~~~r~~~YYtG~vFe~~~~~~~~~~i~~GGRYD~L~~~f~~ 111 (690)
..++++++|+.+.+.++..|+. .+.+|++++|+++||||+||++|.++ ...+|++|||||+|+++||.
T Consensus 201 ~~~~~~~~L~~l~~~l~~~~~~-~i~~Dl~~~r~~~YYTG~vF~~y~~~-~~~~i~~GGRYD~Ll~~Fg~ 268 (272)
T PRK12294 201 NDHPALVELKIWERWLHTQGYK-DIHLDITAQPPRSYYTGLFIQCHFAE-NESRVLTGGYYKGSIEGFGL 268 (272)
T ss_pred hhHHHHHHHHHHHHHHHhcCCC-eEEEcccccCCCCCcCCeEEEEEECC-CCCcccCCcCchhHHHhcCC
Confidence 4478999999999999998875 49999999999999999999999987 45699999999999999984
No 38
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.38 E-value=4.2e-12 Score=149.07 Aligned_cols=134 Identities=17% Similarity=0.270 Sum_probs=105.4
Q ss_pred cCCCCeEEEEeCCCCCcc-EEEEEecChhHHHHHHHhcccEEEEecccCCChhhhHHhhccCCCCCCCceEeeecCCccC
Q psy1221 255 KNEDGRILVTKNPELSKS-HIKYILLNPANHFTDIVQDARSIIVAGGTMEPVSEFKDQLFGSLGVPESRIHHFSCGHVIP 333 (690)
Q Consensus 255 ~~~~~~v~~~~~~~~~~~-~l~~~~ldps~~l~~~~~~~~svIl~SGTL~P~~~~~~~L~~~~g~~~~~~~~~~~~~~~~ 333 (690)
.+..++.+|.+..+.+.. .+...|++|+.+.++++++++++|||||||+|.++|...++.. |+.... ..+..+++|+
T Consensus 365 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vl~SaTL~~~~~f~~~~~~~-~~~~~~-~~~~~~spf~ 442 (654)
T COG1199 365 SDDPDYSYWLEIEEREGVLLLVLPLLVPSKLLEELFSKVASVVLTSATLSPLDSFSSLLGLL-GLEEKL-RFLSLPSPFN 442 (654)
T ss_pred cCCCCceEEEEecccccceeEEeecccHHHHHHHHHhhcCcEEEeeeeccCCCcHHHHHHHc-CCcccc-ceeccCCCCC
Confidence 345678999886543333 3788999999999999999999999999999999999877332 443332 3567777888
Q ss_pred -CCCeeEEEeecCCCCceeEEeecccCChHHHHHHHHHHHHHHhccCCeEEEEcCccchHHHHHhhcC
Q psy1221 334 -KENILPLILCSGPTNRKFDLTFENRTKGDTLKEIAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYMP 400 (690)
Q Consensus 334 -~~~~~~~v~~~~~~~~~l~~~y~~R~~~~~~~~l~~~i~~~~~~~pgg~lvFFpSY~~l~~v~~~~~ 400 (690)
..+..+.|.++ |..+.+++++++++.+|.++.+..|||+|||||||.+|+.++++|+
T Consensus 443 ~~~~~~~~v~~~----------~~~~~~~~~~~~~~~~i~~~~~~~~~~~lvlF~Sy~~l~~~~~~~~ 500 (654)
T COG1199 443 YEEQGQLYVPTD----------LPEPREPELLAKLAAYLREILKASPGGVLVLFPSYEYLKRVAERLK 500 (654)
T ss_pred hhhcceEecccc----------CCCCCChHHHHHHHHHHHHHHhhcCCCEEEEeccHHHHHHHHHHHh
Confidence 55555555443 4444446789999999999999999999999999999999999874
No 39
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.06 E-value=1.8e-09 Score=128.64 Aligned_cols=124 Identities=14% Similarity=0.133 Sum_probs=93.3
Q ss_pred EEEEeCCCC---CccEEEEEecChhHHHHHHHhcccEEEEecccCC--ChhhhHHhhccCCCCCCCceEeeecCCccCCC
Q psy1221 261 ILVTKNPEL---SKSHIKYILLNPANHFTDIVQDARSIIVAGGTME--PVSEFKDQLFGSLGVPESRIHHFSCGHVIPKE 335 (690)
Q Consensus 261 v~~~~~~~~---~~~~l~~~~ldps~~l~~~~~~~~svIl~SGTL~--P~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~ 335 (690)
++|.+.+.. ....|+..++|++. ++.++.+.+++|||||||+ |..+|.+.| |++.. ...+.++++ ++
T Consensus 540 ~~W~e~~~~~~~~~~~l~~~pl~v~~-~~~~~~~~~~~i~tSATL~v~~~f~~~~~l----Gl~~~--~~~~~~~~~-~~ 611 (820)
T PRK07246 540 DYWLESEKQSEKRVTYLNSASKAFTH-FSQLLPETCKTYFVSATLQISPRVSLADLL----GFEEY--LFHKIEKDK-KQ 611 (820)
T ss_pred eEEEEecCCCCcceeEEEeeeCcHHH-HHHHHhcCCeEEEEecccccCCCCcHHHHc----CCCcc--ceecCCCCh-HH
Confidence 789886532 23469999999985 5889999999999999996 544588888 88643 334445323 46
Q ss_pred CeeEEEeecCCCCceeEEeecccCChHHHHHHHHHHHHHHhccCCeEEEEcCccchHHHHHhhcC
Q psy1221 336 NILPLILCSGPTNRKFDLTFENRTKGDTLKEIAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYMP 400 (690)
Q Consensus 336 ~~~~~v~~~~~~~~~l~~~y~~R~~~~~~~~l~~~i~~~~~~~pgg~lvFFpSY~~l~~v~~~~~ 400 (690)
|..++++.+.|+.. ..+++++.+.+++.|..++ .++|++|||||||++|+.|++.+.
T Consensus 612 ~~~~~i~~~~p~~~-------~~~~~~~~~~~~~~i~~~~-~~~g~~LVLFtS~~~l~~v~~~l~ 668 (820)
T PRK07246 612 DQLVVVDQDMPLVT-------ETSDEVYAEEIAKRLEELK-QLQQPILVLFNSKKHLLAVSDLLD 668 (820)
T ss_pred ccEEEeCCCCCCCC-------CCChHHHHHHHHHHHHHHH-hcCCCEEEEECcHHHHHHHHHHHh
Confidence 66666655555432 2345788899999999988 899999999999999999988763
No 40
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=99.01 E-value=9.5e-10 Score=126.90 Aligned_cols=146 Identities=14% Similarity=0.099 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHhCCCceEEEecCCCCCCCCcceeEEEEEEcC-CC-------cceEeeccchhhh-hhhcCCCCCCCCc
Q psy1221 48 EAIKLLFHYCQIYGLKDTIVFDLSLARGLDYYTGVIYEAVLKD-QA-------VGSVAGGGRYDNL-VGMFDPKNKTTPC 118 (690)
Q Consensus 48 ~~l~~~~~~l~~~g~~~~i~~d~~~~r~~~YYtG~vFe~~~~~-~~-------~~~i~~GGRYD~L-~~~f~~~~~~~~~ 118 (690)
.+...+.+.|+.+|++ +.+|+. ||++||+.+.|++ .+. +. +..+++|||||.+ +...|+ +..|+
T Consensus 367 ~~~~~~~~~l~~~~i~--~~~~~~--~g~~y~~~~~f~~-~~~lg~~~~~~t~q~~~~~g~ryd~~~~~~~g~--~~~p~ 439 (563)
T TIGR00418 367 KAEAALEEALKELGVP--YEIDPG--RGAFYGPKIDFAF-KDALGREWQCATVQLDFELPERFDLTYVDEDNE--EKRPV 439 (563)
T ss_pred HHHHHHHHHHHhCCCc--eEEcCC--CcceecceEEEEe-ecCCCCceeeceeeeccCCHhhcCCEEECCCCC--EEeeE
Confidence 4455667777888987 899998 9999999999995 432 11 2347889999995 788875 56787
Q ss_pred cchhhhhhhhcccccccCcceeeeeHHHHHHHHHhh-hhccCCcccCCceeEEEEeCCccchHHHHhHhhhhhcCC-ccc
Q psy1221 119 VAAKLLHEVQGLLETSCRSCREDIGVERLFSIIENR-NAEQGVKVKTTSTQVYVASAQKNLVEPRMQLCHELWGGE-KTQ 196 (690)
Q Consensus 119 ~g~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~l~~~L~~~~-i~~ 196 (690)
++ -+||++|+|||+.++... +... ..+..+.+|+|++.++.....++.+++.||+.+ .+.
T Consensus 440 ii----------------~~Gfa~gieRli~~l~e~~~~~~--p~~~~p~~v~vi~~~~~~~~~a~~ia~~LR~~Gi~v~ 501 (563)
T TIGR00418 440 MI----------------HRAILGSIERFIAILLEKYAGNF--PLWLAPVQVVVIPVNERHLDYAKKVAQKLKKAGIRVD 501 (563)
T ss_pred EE----------------EeeccCcHHHHHHHHHHhccCCC--CCcCCCceEEEEEccchHHHHHHHHHHHHHHcCCEEE
Confidence 64 267999999999888542 2111 123467889999999888889999999999965 445
Q ss_pred CCcccccHHHHHhhhhhcCCCC
Q psy1221 197 EKPKLSGLQSFLKGVQENNPNL 218 (690)
Q Consensus 197 ~~~~~~~Lk~~lk~~~kl~~~~ 218 (690)
.+....++++.++.+++.+...
T Consensus 502 ~d~~~~sl~~q~k~A~~~g~~~ 523 (563)
T TIGR00418 502 VDDRNERLGKKIREAQKQKIPY 523 (563)
T ss_pred EECCCCCHHHHHHHHHhcCCCE
Confidence 5666778999999999987653
No 41
>KOG1035|consensus
Probab=98.99 E-value=2.4e-09 Score=125.48 Aligned_cols=148 Identities=15% Similarity=0.202 Sum_probs=106.3
Q ss_pred HHHHHhhhhhhhccHHHHHHHHHHHHHHHHHHHhCCCceEEEecCCCCCCCCcceeEEEEEEcCC-----CcceEeeccc
Q psy1221 27 LVENLLADEFLAKSKQAKEGLEAIKLLFHYCQIYGLKDTIVFDLSLARGLDYYTGVIYEAVLKDQ-----AVGSVAGGGR 101 (690)
Q Consensus 27 ~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~l~~~g~~~~i~~d~~~~r~~~YYtG~vFe~~~~~~-----~~~~i~~GGR 101 (690)
.+.++++.. +.....++ +|++|+.++.++..+|++..+.|+.++.+......|++|++.+... .+..+++|||
T Consensus 1138 ~~l~~~~~~-~~~~~~vr-~L~eLe~~~~~~~~~~i~~~~~i~~g~~~~~~~~~g~~~qi~a~~~~~~~~~~~~la~GgR 1215 (1351)
T KOG1035|consen 1138 QALKLIRGK-LRADSLVR-ALKELENVVGLLRSLGIEEHVHIYVGPTESRHRNGGIQFQITAEIKSNTSGDPVLLAAGGR 1215 (1351)
T ss_pred hhhHHHhhh-hhhhHHHH-HHHHHHHHHHHHHHhccccceEEeeccceeEEcCCcEEEEEeecccCCCcCCceeeecccc
Confidence 344444332 33334556 9999999999999999999999999988888888889999998752 2446999999
Q ss_pred hhhhhhhcCCCCCCCCccchhhhhhhhcccccccCcceeeeeHHHHHHHHHhhhhccCCcccCCceeEEEEeCCccchHH
Q psy1221 102 YDNLVGMFDPKNKTTPCVAAKLLHEVQGLLETSCRSCREDIGVERLFSIIENRNAEQGVKVKTTSTQVYVASAQKNLVEP 181 (690)
Q Consensus 102 YD~L~~~f~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~ 181 (690)
||.++..|+.. +... + +.|+|.+......-.+.++. ++.+.+..|||+||+.+...+..
T Consensus 1216 yd~~~~~~~~~-~~~~-~---------------p~a~gv~~~~~~~~~~~~~~----~~~~~~~~cdvlics~g~~l~t~ 1274 (1351)
T KOG1035|consen 1216 YDSLLQEVRDE-QKMN-L---------------PGAIGVSALSTIRQHAPKDL----EPIKTPSSCDVLICSRGSGLLTQ 1274 (1351)
T ss_pred hHHHHHHhhhh-hhhc-C---------------cccceehhhHHHHHhhhccc----cCCCCcccccEEEEecCCchHHH
Confidence 99999999863 2222 1 12455442222222233332 23355678999999999888899
Q ss_pred HHhHhhhhhcCCcccC
Q psy1221 182 RMQLCHELWGGEKTQE 197 (690)
Q Consensus 182 ~~~l~~~L~~~~i~~~ 197 (690)
++.|++.||..++.+.
T Consensus 1275 ~~~l~~~LWs~gI~a~ 1290 (1351)
T KOG1035|consen 1275 RMELVAKLWSKGIKAE 1290 (1351)
T ss_pred HHHHHHHHHHcCcccc
Confidence 9999999999766643
No 42
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.83 E-value=4.2e-08 Score=112.45 Aligned_cols=131 Identities=9% Similarity=0.049 Sum_probs=97.6
Q ss_pred CeEEEEeCCCCCccEEEEEecChhHHHHH-HHhcccEEEEecccCCC--------hhhhHHhhccCCCCCCCceEeeecC
Q psy1221 259 GRILVTKNPELSKSHIKYILLNPANHFTD-IVQDARSIIVAGGTMEP--------VSEFKDQLFGSLGVPESRIHHFSCG 329 (690)
Q Consensus 259 ~~v~~~~~~~~~~~~l~~~~ldps~~l~~-~~~~~~svIl~SGTL~P--------~~~~~~~L~~~~g~~~~~~~~~~~~ 329 (690)
.+++|.+... ....|...++|.+..|+. +++..+++|||||||+. |+||...| |++.. .+..+
T Consensus 338 ~~~~~~~~~~-~~~~L~~~Pl~va~~l~~~~~~~~~~~I~TSATL~v~~~~~~~~F~~f~~~l----GL~~~---~l~~~ 409 (636)
T TIGR03117 338 SAVLQFSPDR-RFPSLIVGREDLGKVMGGLWKDVTHGAIIVSATLYLPDRFGQMSCDYLKRVL----SLPLS---RLDTP 409 (636)
T ss_pred ceEEEEecCC-CceEEEEecccHHHHHHHHHhcCCCeEEEEccccccCCcCCCcCcHHHHHhc----CCCcc---ceeCC
Confidence 5678876432 335799999999999999 55677899999999998 79999999 88643 67788
Q ss_pred CccC----CCCe-eEEEeec----CCCCceeEEeecccC----ChHHHHHHHHHHHHHHhccCCeEEEEcCccchHHHHH
Q psy1221 330 HVIP----KENI-LPLILCS----GPTNRKFDLTFENRT----KGDTLKEIAMTITNLCTIVPKGMVCFFPSYDYEAIVY 396 (690)
Q Consensus 330 ~~~~----~~~~-~~~v~~~----~~~~~~l~~~y~~R~----~~~~~~~l~~~i~~~~~~~pgg~lvFFpSY~~l~~v~ 396 (690)
+||+ .+.. .++++.+ .|+...- .+.... .+.+.+.+++.|..+.....||+||.|+||..|+.++
T Consensus 410 SPFd~~y~~qa~~~LyvP~~~~~~lP~p~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lvLfTS~~~~~~~~ 487 (636)
T TIGR03117 410 SPIVAPWVRNAIPHLHVPNAKARFLRPVGKD--EQGDANLQEAERTWLENVSLSTAAILRKAQGGTLVLTTAFSHISAIG 487 (636)
T ss_pred CCCCchhHhcCceEEEEcCccccCCCCCCCC--cccchhhhcchhhHHHHHHHHHHHHHHHcCCCEEEEechHHHHHHHH
Confidence 8898 3332 5555533 2333210 011110 1447788999999999999999999999999999999
Q ss_pred hhc
Q psy1221 397 NYM 399 (690)
Q Consensus 397 ~~~ 399 (690)
..+
T Consensus 488 ~~l 490 (636)
T TIGR03117 488 QLV 490 (636)
T ss_pred HHH
Confidence 876
No 43
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=98.54 E-value=2.2e-07 Score=108.75 Aligned_cols=142 Identities=15% Similarity=0.116 Sum_probs=106.0
Q ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCCcceeEEEEEEcC-CCcceEeeccchhh---------hhhhcCCCCCCCCccc
Q psy1221 51 KLLFHYCQIYGLKDTIVFDLSLARGLDYYTGVIYEAVLKD-QAVGSVAGGGRYDN---------LVGMFDPKNKTTPCVA 120 (690)
Q Consensus 51 ~~~~~~l~~~g~~~~i~~d~~~~r~~~YYtG~vFe~~~~~-~~~~~i~~GGRYD~---------L~~~f~~~~~~~~~~g 120 (690)
..+.+.|+..|++ +.+|++ ||. || |.+|++...+ .++...|+|||||. ++...|+ +.+|+++
T Consensus 441 ~~l~~~l~~~~~~--y~~~~~--~ga-~Y-~~~~e~~~~~~~~~~~~~~t~~~d~~~~~~f~l~~~~~~g~--~~~P~i~ 512 (639)
T PRK12444 441 ASLENVLQSLNYK--YRLNEG--DGA-FY-GPKIDFHIKDALNRSHQCGTIQLDFQMPEKFDLNYIDEKNE--KRRPVVI 512 (639)
T ss_pred HHHHHHHHHcCCC--ceeccC--Ccc-cc-cceEEEEeecCCCChhcccceeeecccccccceEEECCCCC--ccccEEE
Confidence 3455666888887 899998 888 98 9999999876 34568999999999 6666664 4566554
Q ss_pred hhhhhhhhcccccccCcceeeeeHHHHHHHHHh-hhhccCCcccCCceeEEEEeCCc-cchHHHHhHhhhhhcCC-cccC
Q psy1221 121 AKLLHEVQGLLETSCRSCREDIGVERLFSIIEN-RNAEQGVKVKTTSTQVYVASAQK-NLVEPRMQLCHELWGGE-KTQE 197 (690)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~v~v~~~~~-~~~~~~~~l~~~L~~~~-i~~~ 197 (690)
- .++..++|||+.+|.. .+... ..+..+.+|+|++.++ .....++.+++.||+.+ .++.
T Consensus 513 ~----------------~~~~g~ieRli~~L~e~~~~~~--p~~~ap~qV~Ii~~~~~~~~~~a~~la~~LR~~Gi~vei 574 (639)
T PRK12444 513 H----------------RAVLGSLDRFLAILIEHFGGAF--PAWLAPVQVKVIPVSNAVHVQYADEVADKLAQAGIRVER 574 (639)
T ss_pred E----------------ECCCCCHHHHHHHHHHhcCCCC--CCccCCceEEEEEcccHHHHHHHHHHHHHHHHCCCEEEE
Confidence 1 1155599999988843 22111 1234678999999998 57788999999999954 4555
Q ss_pred CcccccHHHHHhhhhhcCCCC
Q psy1221 198 KPKLSGLQSFLKGVQENNPNL 218 (690)
Q Consensus 198 ~~~~~~Lk~~lk~~~kl~~~~ 218 (690)
+....++++.++.+++.+...
T Consensus 575 d~~~~sl~kq~k~A~k~g~~~ 595 (639)
T PRK12444 575 DERDEKLGYKIREAQMQKIPY 595 (639)
T ss_pred ECCCCCHHHHHHHHHHcCCCE
Confidence 677789999999999888653
No 44
>PRK04173 glycyl-tRNA synthetase; Provisional
Probab=98.05 E-value=1.1e-05 Score=90.42 Aligned_cols=158 Identities=15% Similarity=0.133 Sum_probs=103.4
Q ss_pred HHHHHHHHHHhCCC-ceEEEecCCCCCCCCcceeEEEEEEcC--C-Cc---ceEeeccchhhhhh--hcCCCCCCCCccc
Q psy1221 50 IKLLFHYCQIYGLK-DTIVFDLSLARGLDYYTGVIYEAVLKD--Q-AV---GSVAGGGRYDNLVG--MFDPKNKTTPCVA 120 (690)
Q Consensus 50 l~~~~~~l~~~g~~-~~i~~d~~~~r~~~YYtG~vFe~~~~~--~-~~---~~i~~GGRYD~L~~--~f~~~~~~~~~~g 120 (690)
++.+...+..+|++ .++.+++...++++||++.+|++.+.. + .. ..+++||||| |.. .|++ .+.+-+.
T Consensus 234 l~~~~~~l~~lG~~~~~~~~s~~~~~e~~~ys~~~wd~e~~~~~g~~~~e~~g~~~~~dyd-L~~~~~~s~--~dl~y~~ 310 (456)
T PRK04173 234 IELRKNWLLDLGIDPENLRFREHLPEELAHYSKATWDIEYKFPFGRFWGELEGIANRTDYD-LSRHSKHSG--EDLSYFD 310 (456)
T ss_pred HHHHHHHHHHcCCCccceEEEecCcchhhccHHHHHhHHHhCCCCCcEEEEeeeeccchhh-cccchhhcC--CCeEEEe
Confidence 34445556778986 469999999999999999998876532 1 01 3578999999 654 3443 2333110
Q ss_pred hhhhhhhhccc--ccccCcceeeeeHHHHHHHHHhhhhcc------------CCcccCCceeEEEEeCCcc--chHHHHh
Q psy1221 121 AKLLHEVQGLL--ETSCRSCREDIGVERLFSIIENRNAEQ------------GVKVKTTSTQVYVASAQKN--LVEPRMQ 184 (690)
Q Consensus 121 ~~~~~~~~~~~--~~~~~~~g~~~~~~~l~~~~~~~~~~~------------~~~~~~~~~~v~v~~~~~~--~~~~~~~ 184 (690)
.+.. ...++-+++|+|+|||+.++....... ....+..+.+|+|++.++. ....+.+
T Consensus 311 -------~~~~~~~~~P~vi~~siGieRl~~ail~~~~~~~~~~~~~~r~~l~~P~~lAP~qV~Iipi~~~~e~~~~A~~ 383 (456)
T PRK04173 311 -------DETTGEKYIPYVIEPSAGLDRLLLAFLEDAYTEEELGGGDKRTVLRLPPALAPVKVAVLPLVKKEKLSEKARE 383 (456)
T ss_pred -------cCCCCceeeeEEEEecccHHHHHHHHHHHHcccccccCCcceeEEECCCcCCCCEEEEEEecCcHHHHHHHHH
Confidence 0111 112567789999999765543222111 1123456789999998873 5678899
Q ss_pred HhhhhhcCCcccCCcccccHHHHHhhhhhcCCCC
Q psy1221 185 LCHELWGGEKTQEKPKLSGLQSFLKGVQENNPNL 218 (690)
Q Consensus 185 l~~~L~~~~i~~~~~~~~~Lk~~lk~~~kl~~~~ 218 (690)
+++.||+.+.+..+ ...++...++.+++.+...
T Consensus 384 la~~LR~~irVelD-~~~slgkkir~A~~~Gip~ 416 (456)
T PRK04173 384 IYAELRKDFNVDYD-DSGSIGKRYRRQDEIGTPF 416 (456)
T ss_pred HHHHHHhcCEEEEe-CCCCHHHHHHHHHHcCCCE
Confidence 99999988323334 3468999999998887643
No 45
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=97.70 E-value=0.00041 Score=63.21 Aligned_cols=97 Identities=13% Similarity=0.177 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHhhhcccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCc-hhHHHHHHHhhhcccC
Q psy1221 572 DTLKEIAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKT-SEVDKVLSDYGTSVEK 650 (690)
Q Consensus 572 ~~~~~l~~~I~~l~~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~-~~~~~~l~~f~~~~~~ 650 (690)
.-.+.+...+.+..+ ..+.+|||+++...++.+++.+++.. ....++..... .++..++++|++.
T Consensus 12 ~k~~~i~~~i~~~~~-~~~~~lvf~~~~~~~~~~~~~l~~~~----------~~~~~~~~~~~~~~~~~~~~~f~~~--- 77 (131)
T cd00079 12 EKLEALLELLKEHLK-KGGKVLIFCPSKKMLDELAELLRKPG----------IKVAALHGDGSQEEREEVLKDFREG--- 77 (131)
T ss_pred HHHHHHHHHHHhccc-CCCcEEEEeCcHHHHHHHHHHHHhcC----------CcEEEEECCCCHHHHHHHHHHHHcC---
Confidence 345556666666543 56789999999999999999998532 12344444433 3788899999875
Q ss_pred CceEEEEeeCcccccccccCCCcceEEEEEcCCCCC
Q psy1221 651 GGALMLSVIGGKLSEGLNFSDDLGRCVVVMCNSNPL 686 (690)
Q Consensus 651 ~~aiLfaV~gG~~sEGIDf~g~~~r~ViivgLPfp~ 686 (690)
...+|+++ ..++||+|+++ +.+||+.+.|+..
T Consensus 78 ~~~ili~t--~~~~~G~d~~~--~~~vi~~~~~~~~ 109 (131)
T cd00079 78 EIVVLVAT--DVIARGIDLPN--VSVVINYDLPWSP 109 (131)
T ss_pred CCcEEEEc--ChhhcCcChhh--CCEEEEeCCCCCH
Confidence 56788887 88999999986 8889999998764
No 46
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=97.46 E-value=0.003 Score=70.69 Aligned_cols=90 Identities=8% Similarity=0.148 Sum_probs=70.0
Q ss_pred HHHHHhhhc-ccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCc-hhHHHHHHHhhhcccCCceEEE
Q psy1221 579 MTITNLCTI-VPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKT-SEVDKVLSDYGTSVEKGGALML 656 (690)
Q Consensus 579 ~~I~~l~~~-~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~-~~~~~~l~~f~~~~~~~~aiLf 656 (690)
..+..+.+. ..+.+|||++|....+.+++.+++.++ ...++.+..+ .++...+++|++. .-.||+
T Consensus 234 ~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~----------~~~~l~g~~~~~~R~~~l~~f~~G---~~~vLV 300 (434)
T PRK11192 234 ALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKAGI----------NCCYLEGEMVQAKRNEAIKRLTDG---RVNVLV 300 (434)
T ss_pred HHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhCCC----------CEEEecCCCCHHHHHHHHHHHhCC---CCcEEE
Confidence 334444443 457899999999999999999986543 3556666554 3889999999976 568888
Q ss_pred EeeCcccccccccCCCcceEEEEEcCCCC
Q psy1221 657 SVIGGKLSEGLNFSDDLGRCVVVMCNSNP 685 (690)
Q Consensus 657 aV~gG~~sEGIDf~g~~~r~ViivgLPfp 685 (690)
|+ ..+++|||+++ ++.||..++|..
T Consensus 301 aT--d~~~~GiDip~--v~~VI~~d~p~s 325 (434)
T PRK11192 301 AT--DVAARGIDIDD--VSHVINFDMPRS 325 (434)
T ss_pred Ec--cccccCccCCC--CCEEEEECCCCC
Confidence 88 88999999985 788999999864
No 47
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=97.30 E-value=0.0055 Score=69.20 Aligned_cols=82 Identities=13% Similarity=0.168 Sum_probs=65.8
Q ss_pred cccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCc-hhHHHHHHHhhhcccCCceEEEEeeCccccc
Q psy1221 587 IVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKT-SEVDKVLSDYGTSVEKGGALMLSVIGGKLSE 665 (690)
Q Consensus 587 ~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~-~~~~~~l~~f~~~~~~~~aiLfaV~gG~~sE 665 (690)
..++.++||+++....+.+++.+.+.+.. ...+-+..+ .+++.++++|++. .-.||+|+ ..+++
T Consensus 240 ~~~~~~lVF~~t~~~~~~l~~~L~~~~~~----------v~~~hg~~~~~eR~~~l~~F~~g---~~~vLVaT--dv~~r 304 (460)
T PRK11776 240 HQPESCVVFCNTKKECQEVADALNAQGFS----------ALALHGDLEQRDRDQVLVRFANR---SCSVLVAT--DVAAR 304 (460)
T ss_pred cCCCceEEEECCHHHHHHHHHHHHhCCCc----------EEEEeCCCCHHHHHHHHHHHHcC---CCcEEEEe--ccccc
Confidence 34678999999999999999999876532 334444433 4889999999976 56899888 89999
Q ss_pred ccccCCCcceEEEEEcCCCC
Q psy1221 666 GLNFSDDLGRCVVVMCNSNP 685 (690)
Q Consensus 666 GIDf~g~~~r~ViivgLPfp 685 (690)
|||+++ ++.||..++|..
T Consensus 305 GiDi~~--v~~VI~~d~p~~ 322 (460)
T PRK11776 305 GLDIKA--LEAVINYELARD 322 (460)
T ss_pred ccchhc--CCeEEEecCCCC
Confidence 999997 679999999964
No 48
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=97.23 E-value=0.0078 Score=69.74 Aligned_cols=82 Identities=9% Similarity=0.100 Sum_probs=65.9
Q ss_pred ccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCc-hhHHHHHHHhhhcccCCceEEEEeeCcccccc
Q psy1221 588 VPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKT-SEVDKVLSDYGTSVEKGGALMLSVIGGKLSEG 666 (690)
Q Consensus 588 ~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~-~~~~~~l~~f~~~~~~~~aiLfaV~gG~~sEG 666 (690)
....+|||+.+-...+.+++.+.+.++ +..++-...+ .++..++++|++. +-.||+|+ ..+++|
T Consensus 256 ~~~k~LVF~nt~~~ae~l~~~L~~~g~----------~v~~lhg~l~~~eR~~il~~Fr~G---~~~VLVaT--dv~arG 320 (572)
T PRK04537 256 EGARTMVFVNTKAFVERVARTLERHGY----------RVGVLSGDVPQKKRESLLNRFQKG---QLEILVAT--DVAARG 320 (572)
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHHcCC----------CEEEEeCCCCHHHHHHHHHHHHcC---CCeEEEEe--hhhhcC
Confidence 355799999999999999999986543 2444444443 3789999999975 67899988 889999
Q ss_pred cccCCCcceEEEEEcCCCCC
Q psy1221 667 LNFSDDLGRCVVVMCNSNPL 686 (690)
Q Consensus 667 IDf~g~~~r~ViivgLPfp~ 686 (690)
||+++ +++||..++|+..
T Consensus 321 IDip~--V~~VInyd~P~s~ 338 (572)
T PRK04537 321 LHIDG--VKYVYNYDLPFDA 338 (572)
T ss_pred CCccC--CCEEEEcCCCCCH
Confidence 99996 6899999999754
No 49
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=97.21 E-value=0.0051 Score=73.66 Aligned_cols=97 Identities=8% Similarity=0.073 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHhhhcccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHh-cCceEEEcCCCc-hhHHHHHHHhhhcccC
Q psy1221 573 TLKEIAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIA-KKKVVFREPKKT-SEVDKVLSDYGTSVEK 650 (690)
Q Consensus 573 ~~~~l~~~I~~l~~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~-~~~~i~~E~~~~-~~~~~~l~~f~~~~~~ 650 (690)
+...+...|..++...+|.+|||+|+....+.+++.+++. +. ..+.+.+-+..+ .++.+.++.|+..
T Consensus 193 ~~~~v~~~l~~~l~~~~g~iLVFlpg~~eI~~l~~~L~~~--------~~~~~~v~pLHg~L~~~eq~~~~~~~~~G--- 261 (819)
T TIGR01970 193 LEDAVSRAVEHALASETGSILVFLPGQAEIRRVQEQLAER--------LDSDVLICPLYGELSLAAQDRAIKPDPQG--- 261 (819)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHhh--------cCCCcEEEEecCCCCHHHHHHHHhhcccC---
Confidence 3445566677776666899999999999999999999842 11 112233444433 3677888888765
Q ss_pred CceEEEEeeCcccccccccCCCcceEEEEEcCCC
Q psy1221 651 GGALMLSVIGGKLSEGLNFSDDLGRCVVVMCNSN 684 (690)
Q Consensus 651 ~~aiLfaV~gG~~sEGIDf~g~~~r~ViivgLPf 684 (690)
...|++|+ ....-|||++| ++.||=.|+|-
T Consensus 262 ~rkVlVAT--nIAErgItIp~--V~~VID~Gl~r 291 (819)
T TIGR01970 262 RRKVVLAT--NIAETSLTIEG--IRVVIDSGLAR 291 (819)
T ss_pred CeEEEEec--chHhhcccccC--ceEEEEcCccc
Confidence 46788888 89999999998 88999999984
No 50
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=97.16 E-value=0.0013 Score=76.31 Aligned_cols=143 Identities=16% Similarity=0.175 Sum_probs=93.7
Q ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCCcceeEEEEEEcC--CCc---ceE----eeccchhh-hhhhcCCCCCCCCccc
Q psy1221 51 KLLFHYCQIYGLKDTIVFDLSLARGLDYYTGVIYEAVLKD--QAV---GSV----AGGGRYDN-LVGMFDPKNKTTPCVA 120 (690)
Q Consensus 51 ~~~~~~l~~~g~~~~i~~d~~~~r~~~YYtG~vFe~~~~~--~~~---~~i----~~GGRYD~-L~~~f~~~~~~~~~~g 120 (690)
..+.+.++..|++ +.+++. +.+||+ ..|++...+ +.. +++ ..|+|||- +....|. +..|.+.
T Consensus 376 ~~l~~~l~~~g~~--~~~~~~---~~~~y~-~~~~~~~~d~~g~~~~~~t~~~~~~~~~~fdl~y~~~~~~--~~~p~~i 447 (575)
T PRK12305 376 EALREALEELGLE--YVEDPG---GAAFYG-PKIDVQIKDALGREWQMSTIQLDFNLPERFDLEYTAEDGK--RQRPVMI 447 (575)
T ss_pred HHHHHHHHhcCCC--cEecCC---Cccccc-ccEEEEeeccCCCceeccceeeecccHhhCCCEEECCCCC--ccCceEE
Confidence 3445556777876 667777 778996 557764432 111 233 35689994 4554443 4466551
Q ss_pred hhhhhhhhcccccccCcceeeeeHHHHHHHHHhhhhccCCcccCCceeEEEEeCCccchHHHHhHhhhhhcCC-cccCCc
Q psy1221 121 AKLLHEVQGLLETSCRSCREDIGVERLFSIIENRNAEQGVKVKTTSTQVYVASAQKNLVEPRMQLCHELWGGE-KTQEKP 199 (690)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~l~~~L~~~~-i~~~~~ 199 (690)
++ |+.-++|||+.+|.+.... ....+..+.+|+|++.++.....++++++.||+.+ .++.+.
T Consensus 448 --------------h~--~~~G~~eRl~~~l~e~~~~-~~p~~~~p~~v~Ii~~~~~~~~~a~~i~~~Lr~~gi~v~~d~ 510 (575)
T PRK12305 448 --------------HR--ALFGSIERFIGILTEHYAG-AFPFWLAPVQVVIIPVADAHNEYAEEVAKKLRAAGIRVEVDT 510 (575)
T ss_pred --------------Ec--cccccHHHHHHHHHHHhCC-CCCCCCCCccEEEEEeChHHHHHHHHHHHHHHHCCCEEEEEC
Confidence 00 2333899999999653110 01122456789999999888889999999999965 445566
Q ss_pred ccccHHHHHhhhhhcCCCC
Q psy1221 200 KLSGLQSFLKGVQENNPNL 218 (690)
Q Consensus 200 ~~~~Lk~~lk~~~kl~~~~ 218 (690)
...++++.++.+++.+...
T Consensus 511 ~~~~l~kk~~~A~~~g~p~ 529 (575)
T PRK12305 511 SNERLNKKIRNAQKQKIPY 529 (575)
T ss_pred CCCCHHHHHHHHHhcCCCE
Confidence 6678999999999987643
No 51
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=97.16 E-value=0.011 Score=66.12 Aligned_cols=82 Identities=9% Similarity=0.118 Sum_probs=65.9
Q ss_pred ccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCc-hhHHHHHHHhhhcccCCceEEEEeeCcccccc
Q psy1221 588 VPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKT-SEVDKVLSDYGTSVEKGGALMLSVIGGKLSEG 666 (690)
Q Consensus 588 ~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~-~~~~~~l~~f~~~~~~~~aiLfaV~gG~~sEG 666 (690)
.++.++||+++....+.+++.+...++ +..++-+... .++..++++|++. +-.||+|+ ..+++|
T Consensus 254 ~~~~~lVF~~t~~~~~~l~~~L~~~g~----------~v~~lhg~~~~~~R~~~l~~F~~g---~~~vLVaT--dv~~rG 318 (423)
T PRK04837 254 WPDRAIIFANTKHRCEEIWGHLAADGH----------RVGLLTGDVAQKKRLRILEEFTRG---DLDILVAT--DVAARG 318 (423)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhCCC----------cEEEecCCCChhHHHHHHHHHHcC---CCcEEEEe--chhhcC
Confidence 467899999999999999999986543 2344444433 3788999999886 67899988 889999
Q ss_pred cccCCCcceEEEEEcCCCCC
Q psy1221 667 LNFSDDLGRCVVVMCNSNPL 686 (690)
Q Consensus 667 IDf~g~~~r~ViivgLPfp~ 686 (690)
||+++ +++||..++|...
T Consensus 319 iDip~--v~~VI~~d~P~s~ 336 (423)
T PRK04837 319 LHIPA--VTHVFNYDLPDDC 336 (423)
T ss_pred CCccc--cCEEEEeCCCCch
Confidence 99997 7899999999643
No 52
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=97.15 E-value=0.012 Score=66.52 Aligned_cols=80 Identities=11% Similarity=0.107 Sum_probs=63.2
Q ss_pred cCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCc-hhHHHHHHHhhhcccCCceEEEEeeCccccccc
Q psy1221 589 PKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKT-SEVDKVLSDYGTSVEKGGALMLSVIGGKLSEGL 667 (690)
Q Consensus 589 ~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~-~~~~~~l~~f~~~~~~~~aiLfaV~gG~~sEGI 667 (690)
...+|||++|....+.+++.+.+.++. ...+-...+ .++..+++.|++. +-.||+|+ ..+++||
T Consensus 245 ~~~~lVF~~t~~~~~~l~~~L~~~g~~----------~~~lhg~~~~~~R~~~l~~F~~g---~~~iLVaT--dv~~rGi 309 (456)
T PRK10590 245 WQQVLVFTRTKHGANHLAEQLNKDGIR----------SAAIHGNKSQGARTRALADFKSG---DIRVLVAT--DIAARGL 309 (456)
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHCCCC----------EEEEECCCCHHHHHHHHHHHHcC---CCcEEEEc--cHHhcCC
Confidence 457999999999999999999865432 333444433 4789999999975 56789888 8899999
Q ss_pred ccCCCcceEEEEEcCCCC
Q psy1221 668 NFSDDLGRCVVVMCNSNP 685 (690)
Q Consensus 668 Df~g~~~r~ViivgLPfp 685 (690)
|+++ +++||..++|..
T Consensus 310 Dip~--v~~VI~~~~P~~ 325 (456)
T PRK10590 310 DIEE--LPHVVNYELPNV 325 (456)
T ss_pred Cccc--CCEEEEeCCCCC
Confidence 9997 679999999854
No 53
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.14 E-value=0.008 Score=68.08 Aligned_cols=82 Identities=13% Similarity=0.090 Sum_probs=64.0
Q ss_pred cccCc-EEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCc-hhHHHHHHHhhhcccCCceEEEEeeCcccc
Q psy1221 587 IVPKG-MVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKT-SEVDKVLSDYGTSVEKGGALMLSVIGGKLS 664 (690)
Q Consensus 587 ~~~gg-~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~-~~~~~~l~~f~~~~~~~~aiLfaV~gG~~s 664 (690)
..++. ++||++|....+.+++.++..++. ....-...+ .++..++++|++. +-.||+|+ ..|+
T Consensus 223 ~~~~~~~IIF~~s~~~~e~la~~L~~~g~~----------~~~~H~~l~~~eR~~i~~~F~~g---~~~vLVaT--~~~~ 287 (470)
T TIGR00614 223 EFKGKSGIIYCPSRKKSEQVTASLQNLGIA----------AGAYHAGLEISARDDVHHKFQRD---EIQVVVAT--VAFG 287 (470)
T ss_pred hcCCCceEEEECcHHHHHHHHHHHHhcCCC----------eeEeeCCCCHHHHHHHHHHHHcC---CCcEEEEe--chhh
Confidence 33454 499999999999999999865532 233333333 4789999999975 67899988 7899
Q ss_pred cccccCCCcceEEEEEcCCCC
Q psy1221 665 EGLNFSDDLGRCVVVMCNSNP 685 (690)
Q Consensus 665 EGIDf~g~~~r~ViivgLPfp 685 (690)
+|||+|+ ++.||..++|..
T Consensus 288 ~GID~p~--V~~VI~~~~P~s 306 (470)
T TIGR00614 288 MGINKPD--VRFVIHYSLPKS 306 (470)
T ss_pred ccCCccc--ceEEEEeCCCCC
Confidence 9999997 899999999953
No 54
>PTZ00110 helicase; Provisional
Probab=97.12 E-value=0.011 Score=68.33 Aligned_cols=93 Identities=16% Similarity=0.235 Sum_probs=70.0
Q ss_pred HHHHHHHHHhhhcccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCc-hhHHHHHHHhhhcccCCce
Q psy1221 575 KEIAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKT-SEVDKVLSDYGTSVEKGGA 653 (690)
Q Consensus 575 ~~l~~~I~~l~~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~-~~~~~~l~~f~~~~~~~~a 653 (690)
..+.+.+..+.. ..+.+|||+++....+.+.+.++..++ +.+.+-.... .+++.++++|++. +..
T Consensus 364 ~~L~~ll~~~~~-~~~k~LIF~~t~~~a~~l~~~L~~~g~----------~~~~ihg~~~~~eR~~il~~F~~G---~~~ 429 (545)
T PTZ00110 364 GKLKMLLQRIMR-DGDKILIFVETKKGADFLTKELRLDGW----------PALCIHGDKKQEERTWVLNEFKTG---KSP 429 (545)
T ss_pred HHHHHHHHHhcc-cCCeEEEEecChHHHHHHHHHHHHcCC----------cEEEEECCCcHHHHHHHHHHHhcC---CCc
Confidence 344455544433 457899999999999999999886543 2344444433 4788999999985 567
Q ss_pred EEEEeeCcccccccccCCCcceEEEEEcCCCC
Q psy1221 654 LMLSVIGGKLSEGLNFSDDLGRCVVVMCNSNP 685 (690)
Q Consensus 654 iLfaV~gG~~sEGIDf~g~~~r~ViivgLPfp 685 (690)
||+|+ ..+++|||+++ +++||..++|..
T Consensus 430 ILVaT--dv~~rGIDi~~--v~~VI~~d~P~s 457 (545)
T PTZ00110 430 IMIAT--DVASRGLDVKD--VKYVINFDFPNQ 457 (545)
T ss_pred EEEEc--chhhcCCCccc--CCEEEEeCCCCC
Confidence 88888 88999999997 889999999853
No 55
>PRK13767 ATP-dependent helicase; Provisional
Probab=97.05 E-value=0.016 Score=70.42 Aligned_cols=101 Identities=11% Similarity=0.061 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHhhhcccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCc-hhHHHHHHHhhhcccCC
Q psy1221 573 TLKEIAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKT-SEVDKVLSDYGTSVEKG 651 (690)
Q Consensus 573 ~~~~l~~~I~~l~~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~-~~~~~~l~~f~~~~~~~ 651 (690)
....+.+.|.++++. .+.+|||.+|....+.++..+++... +........+.-...+ .++..+.++|++. .
T Consensus 269 ~~~~l~~~L~~~i~~-~~~~LVF~nTr~~ae~la~~L~~~~~----~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G---~ 340 (876)
T PRK13767 269 ISEALYETLHELIKE-HRTTLIFTNTRSGAERVLYNLRKRFP----EEYDEDNIGAHHSSLSREVRLEVEEKLKRG---E 340 (876)
T ss_pred hHHHHHHHHHHHHhc-CCCEEEEeCCHHHHHHHHHHHHHhch----hhccccceeeeeCCCCHHHHHHHHHHHHcC---C
Confidence 334455666665543 46799999999999999988875211 0001112233333333 3788899999886 4
Q ss_pred ceEEEEeeCcccccccccCCCcceEEEEEcCCCC
Q psy1221 652 GALMLSVIGGKLSEGLNFSDDLGRCVVVMCNSNP 685 (690)
Q Consensus 652 ~aiLfaV~gG~~sEGIDf~g~~~r~ViivgLPfp 685 (690)
-.+|+|+ ..+.+|||+++ +++||..+.|..
T Consensus 341 i~vLVaT--s~Le~GIDip~--Vd~VI~~~~P~s 370 (876)
T PRK13767 341 LKVVVSS--TSLELGIDIGY--IDLVVLLGSPKS 370 (876)
T ss_pred CeEEEEC--ChHHhcCCCCC--CcEEEEeCCCCC
Confidence 5788777 88999999987 889999998854
No 56
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=97.04 E-value=0.0055 Score=73.46 Aligned_cols=96 Identities=13% Similarity=0.027 Sum_probs=69.8
Q ss_pred HHHHHHHHHHhhhcccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCch-hHHHHHHHhhhcccCCc
Q psy1221 574 LKEIAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKTS-EVDKVLSDYGTSVEKGG 652 (690)
Q Consensus 574 ~~~l~~~I~~l~~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~~-~~~~~l~~f~~~~~~~~ 652 (690)
...++..|.+++...+|.+|||+|+...++.+++.+++... .......+-+..+. ++.+.++.|+.. ..
T Consensus 197 ~~~v~~~l~~~l~~~~g~iLVFlpg~~ei~~l~~~L~~~~~-------~~~~v~~Lhg~l~~~eq~~~~~~~~~G---~r 266 (812)
T PRK11664 197 DEAVARATAELLRQESGSLLLFLPGVGEIQRVQEQLASRVA-------SDVLLCPLYGALSLAEQQKAILPAPAG---RR 266 (812)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEcCCHHHHHHHHHHHHHhcc-------CCceEEEeeCCCCHHHHHHHhccccCC---Ce
Confidence 34566677777766689999999999999999999985210 01112223343332 567778877764 56
Q ss_pred eEEEEeeCcccccccccCCCcceEEEEEcCC
Q psy1221 653 ALMLSVIGGKLSEGLNFSDDLGRCVVVMCNS 683 (690)
Q Consensus 653 aiLfaV~gG~~sEGIDf~g~~~r~ViivgLP 683 (690)
.|++|+ ....-|||++| ++.||=.|+|
T Consensus 267 kVlvAT--nIAErsLtIp~--V~~VID~Gl~ 293 (812)
T PRK11664 267 KVVLAT--NIAETSLTIEG--IRLVVDSGLE 293 (812)
T ss_pred EEEEec--chHHhcccccC--ceEEEECCCc
Confidence 899888 88999999998 7899999998
No 57
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=96.89 E-value=0.019 Score=65.92 Aligned_cols=81 Identities=17% Similarity=0.169 Sum_probs=62.2
Q ss_pred cCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCc-hhHHHHHHHhhhcccCCceEEEEeeCccccccc
Q psy1221 589 PKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKT-SEVDKVLSDYGTSVEKGGALMLSVIGGKLSEGL 667 (690)
Q Consensus 589 ~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~-~~~~~~l~~f~~~~~~~~aiLfaV~gG~~sEGI 667 (690)
.+.++||++|....+.+.+.+..... .+...+-+..+ .++..++++|+.. +-.||+|+ ..+++||
T Consensus 367 ~~~~iVFv~s~~~a~~l~~~L~~~~g---------~~~~~~Hg~~~~~eR~~il~~Fr~G---~~~ILVaT--dvl~rGi 432 (518)
T PLN00206 367 KPPAVVFVSSRLGADLLANAITVVTG---------LKALSIHGEKSMKERREVMKSFLVG---EVPVIVAT--GVLGRGV 432 (518)
T ss_pred CCCEEEEcCCchhHHHHHHHHhhccC---------cceEEeeCCCCHHHHHHHHHHHHCC---CCCEEEEe--cHhhccC
Confidence 35799999999999988887764211 12333444433 4889999999986 56899888 8899999
Q ss_pred ccCCCcceEEEEEcCCCC
Q psy1221 668 NFSDDLGRCVVVMCNSNP 685 (690)
Q Consensus 668 Df~g~~~r~ViivgLPfp 685 (690)
|+++ ++.||..++|..
T Consensus 433 Dip~--v~~VI~~d~P~s 448 (518)
T PLN00206 433 DLLR--VRQVIIFDMPNT 448 (518)
T ss_pred Cccc--CCEEEEeCCCCC
Confidence 9986 999999999853
No 58
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=96.84 E-value=0.021 Score=66.71 Aligned_cols=140 Identities=9% Similarity=0.051 Sum_probs=88.3
Q ss_pred ceEEEeCCCCCchhhHHHHhhccCCCCCCceEEEEeCCCccCCCeeEEEeecCCCCcceeeeccccCChHHHHHHHHHHH
Q psy1221 503 RSIIVAGGTMEPVSEFKDQLFGSLGVPESRIHHFSCGHVIPKENILPLILCSGPTNRKFDLTFENRTKGDTLKEIAMTIT 582 (690)
Q Consensus 503 ~svil~SgTLsP~~~f~~~l~~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~I~ 582 (690)
..+|+.|||+++... ..+...++++... .+ -+.|+..|....+... ......+.+.|.
T Consensus 163 ~~vi~lTAT~~~~~~--~~i~~~l~~~~~~--~~--~~~~~r~nl~~~v~~~----------------~~~~~~l~~~l~ 220 (591)
T TIGR01389 163 VPRIALTATADAETR--QDIRELLRLADAN--EF--ITSFDRPNLRFSVVKK----------------NNKQKFLLDYLK 220 (591)
T ss_pred CCEEEEEeCCCHHHH--HHHHHHcCCCCCC--eE--ecCCCCCCcEEEEEeC----------------CCHHHHHHHHHH
Confidence 348999999977422 1222333443321 11 2345544543333211 112233444443
Q ss_pred HhhhcccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCc-hhHHHHHHHhhhcccCCceEEEEeeCc
Q psy1221 583 NLCTIVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKT-SEVDKVLSDYGTSVEKGGALMLSVIGG 661 (690)
Q Consensus 583 ~l~~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~-~~~~~~l~~f~~~~~~~~aiLfaV~gG 661 (690)
+ ...+.++||++|....+.+++.++..++. ....-.+.+ .++..++++|.+. .-.||+|+ .
T Consensus 221 ~---~~~~~~IIf~~sr~~~e~la~~L~~~g~~----------~~~~H~~l~~~~R~~i~~~F~~g---~~~vlVaT--~ 282 (591)
T TIGR01389 221 K---HRGQSGIIYASSRKKVEELAERLESQGIS----------ALAYHAGLSNKVRAENQEDFLYD---DVKVMVAT--N 282 (591)
T ss_pred h---cCCCCEEEEECcHHHHHHHHHHHHhCCCC----------EEEEECCCCHHHHHHHHHHHHcC---CCcEEEEe--c
Confidence 2 22466899999999999999999865432 223333333 4788999999875 56889888 7
Q ss_pred ccccccccCCCcceEEEEEcCCC
Q psy1221 662 KLSEGLNFSDDLGRCVVVMCNSN 684 (690)
Q Consensus 662 ~~sEGIDf~g~~~r~ViivgLPf 684 (690)
.|.+|||+|+ ++.||..++|-
T Consensus 283 a~~~GID~p~--v~~VI~~~~p~ 303 (591)
T TIGR01389 283 AFGMGIDKPN--VRFVIHYDMPG 303 (591)
T ss_pred hhhccCcCCC--CCEEEEcCCCC
Confidence 7999999997 78999999885
No 59
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=96.83 E-value=0.021 Score=66.83 Aligned_cols=82 Identities=10% Similarity=0.003 Sum_probs=65.0
Q ss_pred cccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCc-hhHHHHHHHhhhcccCCceEEEEeeCccccc
Q psy1221 587 IVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKT-SEVDKVLSDYGTSVEKGGALMLSVIGGKLSE 665 (690)
Q Consensus 587 ~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~-~~~~~~l~~f~~~~~~~~aiLfaV~gG~~sE 665 (690)
..++.++||++|....+.+++.++..++. ....-.+.+ .++.+++++|++. .-.||+|+ ..+++
T Consensus 234 ~~~~~~IIFc~tr~~~e~la~~L~~~g~~----------v~~~Ha~l~~~~R~~i~~~F~~g---~~~VLVaT--~a~~~ 298 (607)
T PRK11057 234 QRGKSGIIYCNSRAKVEDTAARLQSRGIS----------AAAYHAGLDNDVRADVQEAFQRD---DLQIVVAT--VAFGM 298 (607)
T ss_pred cCCCCEEEEECcHHHHHHHHHHHHhCCCC----------EEEecCCCCHHHHHHHHHHHHCC---CCCEEEEe--chhhc
Confidence 34567899999999999999999865532 233344433 4789999999876 56899988 77999
Q ss_pred ccccCCCcceEEEEEcCCCC
Q psy1221 666 GLNFSDDLGRCVVVMCNSNP 685 (690)
Q Consensus 666 GIDf~g~~~r~ViivgLPfp 685 (690)
|||+|+ .+.||..++|..
T Consensus 299 GIDip~--V~~VI~~d~P~s 316 (607)
T PRK11057 299 GINKPN--VRFVVHFDIPRN 316 (607)
T ss_pred cCCCCC--cCEEEEeCCCCC
Confidence 999998 789999999863
No 60
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=96.82 E-value=0.025 Score=64.18 Aligned_cols=80 Identities=8% Similarity=0.024 Sum_probs=62.2
Q ss_pred cCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCC-chhHHHHHHHhhhcccCCceEEEEeeCccccccc
Q psy1221 589 PKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKK-TSEVDKVLSDYGTSVEKGGALMLSVIGGKLSEGL 667 (690)
Q Consensus 589 ~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~-~~~~~~~l~~f~~~~~~~~aiLfaV~gG~~sEGI 667 (690)
...+|||++|-...+.+++.+.+.++. ...+-+.. ..++.+++++|++. +-.+|+|+ ..+++||
T Consensus 335 ~~~~IVF~~s~~~~~~l~~~L~~~~~~----------~~~~~g~~~~~~R~~~~~~Fr~G---~~~vLvaT--~~l~~GI 399 (475)
T PRK01297 335 WERVMVFANRKDEVRRIEERLVKDGIN----------AAQLSGDVPQHKRIKTLEGFREG---KIRVLVAT--DVAGRGI 399 (475)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCC----------EEEEECCCCHHHHHHHHHHHhCC---CCcEEEEc--cccccCC
Confidence 357999999999999999888765432 22222322 24788999999876 56788887 8899999
Q ss_pred ccCCCcceEEEEEcCCCC
Q psy1221 668 NFSDDLGRCVVVMCNSNP 685 (690)
Q Consensus 668 Df~g~~~r~ViivgLPfp 685 (690)
|+++ +++||..++|..
T Consensus 400 Di~~--v~~VI~~~~P~s 415 (475)
T PRK01297 400 HIDG--ISHVINFTLPED 415 (475)
T ss_pred cccC--CCEEEEeCCCCC
Confidence 9986 889999999964
No 61
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=96.76 E-value=0.0011 Score=64.24 Aligned_cols=30 Identities=40% Similarity=0.713 Sum_probs=27.2
Q ss_pred HHHHHhccCCeEEEEcCccchHHHHHhhcC
Q psy1221 371 ITNLCTIVPKGMVCFFPSYDYEAIVYNYMP 400 (690)
Q Consensus 371 i~~~~~~~pgg~lvFFpSY~~l~~v~~~~~ 400 (690)
|.++++.+|||+|||||||++|+.+++.|.
T Consensus 1 i~~l~~~~~g~~lv~f~Sy~~l~~~~~~~~ 30 (167)
T PF13307_consen 1 ILELISAVPGGVLVFFPSYRRLEKVYERLK 30 (167)
T ss_dssp HHHHHHCCSSEEEEEESSHHHHHHHHTT-T
T ss_pred ChHHHhcCCCCEEEEeCCHHHHHHHHHHHH
Confidence 678999999999999999999999999773
No 62
>PTZ00424 helicase 45; Provisional
Probab=96.71 E-value=0.043 Score=60.58 Aligned_cols=81 Identities=9% Similarity=0.177 Sum_probs=63.4
Q ss_pred ccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCc-hhHHHHHHHhhhcccCCceEEEEeeCcccccc
Q psy1221 588 VPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKT-SEVDKVLSDYGTSVEKGGALMLSVIGGKLSEG 666 (690)
Q Consensus 588 ~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~-~~~~~~l~~f~~~~~~~~aiLfaV~gG~~sEG 666 (690)
....++||++|....+.+.+.+++.+. +..++.+..+ .++..++++|++. +-.||+|+ ..++||
T Consensus 266 ~~~~~ivF~~t~~~~~~l~~~l~~~~~----------~~~~~h~~~~~~~R~~i~~~f~~g---~~~vLvaT--~~l~~G 330 (401)
T PTZ00424 266 TITQAIIYCNTRRKVDYLTKKMHERDF----------TVSCMHGDMDQKDRDLIMREFRSG---STRVLITT--DLLARG 330 (401)
T ss_pred CCCeEEEEecCcHHHHHHHHHHHHCCC----------cEEEEeCCCCHHHHHHHHHHHHcC---CCCEEEEc--ccccCC
Confidence 346799999999999999988886432 2334444433 3788999999975 56889888 889999
Q ss_pred cccCCCcceEEEEEcCCCC
Q psy1221 667 LNFSDDLGRCVVVMCNSNP 685 (690)
Q Consensus 667 IDf~g~~~r~ViivgLPfp 685 (690)
||+++ +++||..++|..
T Consensus 331 iDip~--v~~VI~~~~p~s 347 (401)
T PTZ00424 331 IDVQQ--VSLVINYDLPAS 347 (401)
T ss_pred cCccc--CCEEEEECCCCC
Confidence 99997 788999999864
No 63
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=96.69 E-value=0.033 Score=66.48 Aligned_cols=101 Identities=14% Similarity=0.052 Sum_probs=67.2
Q ss_pred HHHHHHHHhhhcccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCchhHHHHHHHhhhcccCCceEE
Q psy1221 576 EIAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKTSEVDKVLSDYGTSVEKGGALM 655 (690)
Q Consensus 576 ~l~~~I~~l~~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~~~~~~~l~~f~~~~~~~~aiL 655 (690)
...+.+.+++.. ...++||+.|....+.+++.+++.... ....+...-..+.-+-...++.++.++|++. +-.+|
T Consensus 259 ~~~~~l~~l~~~-~~~~IVF~~sr~~ae~l~~~l~~~l~~-~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G---~i~vL 333 (742)
T TIGR03817 259 EAADLLADLVAE-GARTLTFVRSRRGAELVAAIARRLLGE-VDPDLAERVAAYRAGYLPEDRRELERALRDG---ELLGV 333 (742)
T ss_pred HHHHHHHHHHHC-CCCEEEEcCCHHHHHHHHHHHHHHHHh-hccccccchhheecCCCHHHHHHHHHHHHcC---CceEE
Confidence 345556666543 578999999999999999887742100 0000000111222222234789999999875 45677
Q ss_pred EEeeCcccccccccCCCcceEEEEEcCCCC
Q psy1221 656 LSVIGGKLSEGLNFSDDLGRCVVVMCNSNP 685 (690)
Q Consensus 656 faV~gG~~sEGIDf~g~~~r~ViivgLPfp 685 (690)
+|+ ..++.|||+++ +.+||..|+|..
T Consensus 334 VaT--d~lerGIDI~~--vd~VI~~~~P~s 359 (742)
T TIGR03817 334 ATT--NALELGVDISG--LDAVVIAGFPGT 359 (742)
T ss_pred EEC--chHhccCCccc--ccEEEEeCCCCC
Confidence 777 88999999997 899999999964
No 64
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=96.66 E-value=0.043 Score=64.31 Aligned_cols=81 Identities=10% Similarity=0.031 Sum_probs=63.8
Q ss_pred ccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCc-hhHHHHHHHhhhcccCCceEEEEeeCcccccc
Q psy1221 588 VPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKT-SEVDKVLSDYGTSVEKGGALMLSVIGGKLSEG 666 (690)
Q Consensus 588 ~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~-~~~~~~l~~f~~~~~~~~aiLfaV~gG~~sEG 666 (690)
.+..++||+++....+.+++.+...++. ...+-...+ .+++.++++|+.. +-.||+|+ ..+++|
T Consensus 244 ~~~~~IVF~~tk~~a~~l~~~L~~~g~~----------~~~lhgd~~q~~R~~il~~Fr~G---~~~ILVAT--dv~arG 308 (629)
T PRK11634 244 DFDAAIIFVRTKNATLEVAEALERNGYN----------SAALNGDMNQALREQTLERLKDG---RLDILIAT--DVAARG 308 (629)
T ss_pred CCCCEEEEeccHHHHHHHHHHHHhCCCC----------EEEeeCCCCHHHHHHHHHHHhCC---CCCEEEEc--chHhcC
Confidence 4578999999999999999999876532 233333332 3788999999875 56788887 889999
Q ss_pred cccCCCcceEEEEEcCCCC
Q psy1221 667 LNFSDDLGRCVVVMCNSNP 685 (690)
Q Consensus 667 IDf~g~~~r~ViivgLPfp 685 (690)
||+++ +++||...+|..
T Consensus 309 IDip~--V~~VI~~d~P~~ 325 (629)
T PRK11634 309 LDVER--ISLVVNYDIPMD 325 (629)
T ss_pred CCccc--CCEEEEeCCCCC
Confidence 99997 788999999865
No 65
>PHA02653 RNA helicase NPH-II; Provisional
Probab=96.57 E-value=0.046 Score=64.14 Aligned_cols=93 Identities=13% Similarity=0.129 Sum_probs=61.4
Q ss_pred HHHHHHHhhhcccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCchhHHHHHHHhhhcccCCceEEE
Q psy1221 577 IAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKTSEVDKVLSDYGTSVEKGGALML 656 (690)
Q Consensus 577 l~~~I~~l~~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~~~~~~~l~~f~~~~~~~~aiLf 656 (690)
+.+.+.+.....+|.+|||+|+-...+.+.+.+.+.. ..-+.+.+-+.. .+.++.+++|.+. .+..||+
T Consensus 383 ~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~--------~~~~v~~LHG~L-sq~eq~l~~ff~~--gk~kILV 451 (675)
T PHA02653 383 IVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRL--------PIYDFYIIHGKV-PNIDEILEKVYSS--KNPSIII 451 (675)
T ss_pred HHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhc--------CCceEEeccCCc-CHHHHHHHHHhcc--CceeEEe
Confidence 3344433332345789999999999999999888531 001223333433 3345677777432 1467898
Q ss_pred EeeCcccccccccCCCcceEEEEEcCCC
Q psy1221 657 SVIGGKLSEGLNFSDDLGRCVVVMCNSN 684 (690)
Q Consensus 657 aV~gG~~sEGIDf~g~~~r~ViivgLPf 684 (690)
|+ .-.+.|||++| ++.||=.|+..
T Consensus 452 AT--dIAERGIDIp~--V~~VID~G~~k 475 (675)
T PHA02653 452 ST--PYLESSVTIRN--ATHVYDTGRVY 475 (675)
T ss_pred cc--ChhhccccccC--eeEEEECCCcc
Confidence 88 99999999998 78999888543
No 66
>PRK09401 reverse gyrase; Reviewed
Probab=96.39 E-value=0.032 Score=69.54 Aligned_cols=85 Identities=14% Similarity=0.208 Sum_probs=62.4
Q ss_pred HHhhhcccCcEEEEeccHHH---HHHHHHHHHhcCchhHHHHHhcCceEEEcCCCchhHHHHHHHhhhcccCCceEEEEe
Q psy1221 582 TNLCTIVPKGMVCFFPSYDY---EAIVYNYMRDNHFIERIARIAKKKVVFREPKKTSEVDKVLSDYGTSVEKGGALMLSV 658 (690)
Q Consensus 582 ~~l~~~~~gg~lVfF~Sy~~---l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~~~~~~~l~~f~~~~~~~~aiLfaV 658 (690)
.++++..+.|+|||+++-.. .+.+.+.++..++. ...+-+.. .+.+++|++. +-.||.|+
T Consensus 321 ~~ll~~l~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~----------v~~~hg~l----~~~l~~F~~G---~~~VLVat 383 (1176)
T PRK09401 321 VELVKRLGDGGLIFVPSDKGKEYAEELAEYLEDLGIN----------AELAISGF----ERKFEKFEEG---EVDVLVGV 383 (1176)
T ss_pred HHHHHhcCCCEEEEEecccChHHHHHHHHHHHHCCCc----------EEEEeCcH----HHHHHHHHCC---CCCEEEEe
Confidence 33444456789999998544 99999999876542 22233322 3456999986 56799996
Q ss_pred e--CcccccccccCCCcceEEEEEcCCC
Q psy1221 659 I--GGKLSEGLNFSDDLGRCVVVMCNSN 684 (690)
Q Consensus 659 ~--gG~~sEGIDf~g~~~r~ViivgLPf 684 (690)
. .|.++.|||+|+ .+|.||-+|+|-
T Consensus 384 as~tdv~aRGIDiP~-~IryVI~y~vP~ 410 (1176)
T PRK09401 384 ASYYGVLVRGIDLPE-RIRYAIFYGVPK 410 (1176)
T ss_pred cCCCCceeecCCCCc-ceeEEEEeCCCC
Confidence 4 588999999997 789999999995
No 67
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=96.08 E-value=0.082 Score=64.45 Aligned_cols=141 Identities=12% Similarity=0.085 Sum_probs=90.4
Q ss_pred ceEEEeCCCCCch--hhHHHHhhccCCCCCCceEEEEeCCCccCCCeeEEEeecCCCCcceeeeccccCChHHHHHHHHH
Q psy1221 503 RSIIVAGGTMEPV--SEFKDQLFGSLGVPESRIHHFSCGHVIPKENILPLILCSGPTNRKFDLTFENRTKGDTLKEIAMT 580 (690)
Q Consensus 503 ~svil~SgTLsP~--~~f~~~l~~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ 580 (690)
..+++.+||+++. +.+...| ++.. ... ..+-|+..|+...+++. . ......+.+.
T Consensus 617 vPilALTATAT~~V~eDI~~~L----~l~~--~~v--fr~Sf~RpNL~y~Vv~k--------------~-kk~le~L~~~ 673 (1195)
T PLN03137 617 IPVLALTATATASVKEDVVQAL----GLVN--CVV--FRQSFNRPNLWYSVVPK--------------T-KKCLEDIDKF 673 (1195)
T ss_pred CCeEEEEecCCHHHHHHHHHHc----CCCC--cEE--eecccCccceEEEEecc--------------c-hhHHHHHHHH
Confidence 4578889999874 2333333 4432 112 22335555654444321 1 1122333333
Q ss_pred HHHhhhcccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCc-hhHHHHHHHhhhcccCCceEEEEee
Q psy1221 581 ITNLCTIVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKT-SEVDKVLSDYGTSVEKGGALMLSVI 659 (690)
Q Consensus 581 I~~l~~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~-~~~~~~l~~f~~~~~~~~aiLfaV~ 659 (690)
|... ...+..+||+.|....+.+++.+...++. ..+.-.+.. .++..++++|++. +-.||+|+
T Consensus 674 I~~~--~~~esgIIYC~SRke~E~LAe~L~~~Gik----------a~~YHAGLs~eeR~~vqe~F~~G---ei~VLVAT- 737 (1195)
T PLN03137 674 IKEN--HFDECGIIYCLSRMDCEKVAERLQEFGHK----------AAFYHGSMDPAQRAFVQKQWSKD---EINIICAT- 737 (1195)
T ss_pred HHhc--ccCCCceeEeCchhHHHHHHHHHHHCCCC----------eeeeeCCCCHHHHHHHHHHHhcC---CCcEEEEe-
Confidence 3221 12345799999999999999999876542 344444443 4889999999886 56889888
Q ss_pred CcccccccccCCCcceEEEEEcCCCC
Q psy1221 660 GGKLSEGLNFSDDLGRCVVVMCNSNP 685 (690)
Q Consensus 660 gG~~sEGIDf~g~~~r~ViivgLPfp 685 (690)
..|..|||+|+ +|.||-.++|..
T Consensus 738 -dAFGMGIDkPD--VR~VIHydlPkS 760 (1195)
T PLN03137 738 -VAFGMGINKPD--VRFVIHHSLPKS 760 (1195)
T ss_pred -chhhcCCCccC--CcEEEEcCCCCC
Confidence 77999999998 789999999953
No 68
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=96.05 E-value=0.069 Score=66.29 Aligned_cols=146 Identities=16% Similarity=0.197 Sum_probs=88.1
Q ss_pred cceEEEeCCCCCchhhHHHHhhccCCCCCCceEEEEeCCCccCCCeeEEEeecCCCCcceeeeccccCChHHHHHHHHHH
Q psy1221 502 ARSIIVAGGTMEPVSEFKDQLFGSLGVPESRIHHFSCGHVIPKENILPLILCSGPTNRKFDLTFENRTKGDTLKEIAMTI 581 (690)
Q Consensus 502 ~~svil~SgTLsP~~~f~~~l~~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~I 581 (690)
...+|++|||+.+ +.|..++.. .+++.++ +..++-+ ..+.+..... ...+.+++..+.+.+
T Consensus 218 dlKvILmSATid~-e~fs~~F~~------apvI~V~-Gr~~pVe---i~y~p~~~~~--------~~~~~d~l~~ll~~V 278 (1294)
T PRK11131 218 DLKVIITSATIDP-ERFSRHFNN------APIIEVS-GRTYPVE---VRYRPIVEEA--------DDTERDQLQAIFDAV 278 (1294)
T ss_pred CceEEEeeCCCCH-HHHHHHcCC------CCEEEEc-Cccccce---EEEeeccccc--------chhhHHHHHHHHHHH
Confidence 3579999999965 677666521 2233332 1223222 2222111000 001245677777777
Q ss_pred HHhhhcccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCc-hhHHHHHHHhhhcccCCceEEEEeeC
Q psy1221 582 TNLCTIVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKT-SEVDKVLSDYGTSVEKGGALMLSVIG 660 (690)
Q Consensus 582 ~~l~~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~-~~~~~~l~~f~~~~~~~~aiLfaV~g 660 (690)
..+....+|.+|||+|+....+.+.+.+++.++. ....+-+-+..+ .+..++++.+ .+.-|++|+
T Consensus 279 ~~l~~~~~GdILVFLpg~~EIe~lae~L~~~~~~-------~~~VlpLhg~Ls~~eQ~~Vf~~~-----g~rkIIVAT-- 344 (1294)
T PRK11131 279 DELGREGPGDILIFMSGEREIRDTADALNKLNLR-------HTEILPLYARLSNSEQNRVFQSH-----SGRRIVLAT-- 344 (1294)
T ss_pred HHHhcCCCCCEEEEcCCHHHHHHHHHHHHhcCCC-------cceEeecccCCCHHHHHHHhccc-----CCeeEEEec--
Confidence 7777667889999999999999999999865421 001112223322 2455555432 135788888
Q ss_pred cccccccccCCCcceEEEEEcC
Q psy1221 661 GKLSEGLNFSDDLGRCVVVMCN 682 (690)
Q Consensus 661 G~~sEGIDf~g~~~r~ViivgL 682 (690)
....-|||++| ++.||=.|+
T Consensus 345 NIAEtSITIpg--I~yVID~Gl 364 (1294)
T PRK11131 345 NVAETSLTVPG--IKYVIDPGT 364 (1294)
T ss_pred cHHhhccccCc--ceEEEECCC
Confidence 89999999997 888888874
No 69
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=95.99 E-value=0.13 Score=62.74 Aligned_cols=82 Identities=6% Similarity=0.171 Sum_probs=62.8
Q ss_pred ccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCch-hHHHHHHHhhhcccCCceEEEEeeCcccccc
Q psy1221 588 VPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKTS-EVDKVLSDYGTSVEKGGALMLSVIGGKLSEG 666 (690)
Q Consensus 588 ~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~~-~~~~~l~~f~~~~~~~~aiLfaV~gG~~sEG 666 (690)
..+.++||+++-...+.+++.+++.. ...+...+-++++. ++++.+++|++. +-.||+|+ ..++.|
T Consensus 659 ~g~qv~if~n~i~~~e~l~~~L~~~~--------p~~~v~~lHG~m~~~eRe~im~~F~~G---k~~ILVaT--~iie~G 725 (926)
T TIGR00580 659 RGGQVFYVHNRIESIEKLATQLRELV--------PEARIAIAHGQMTENELEEVMLEFYKG---EFQVLVCT--TIIETG 725 (926)
T ss_pred cCCeEEEEECCcHHHHHHHHHHHHhC--------CCCeEEEecCCCCHHHHHHHHHHHHcC---CCCEEEEC--Chhhcc
Confidence 35678999999999999988888421 12234555555543 889999999986 67899888 899999
Q ss_pred cccCCCcceEEEEEcCCC
Q psy1221 667 LNFSDDLGRCVVVMCNSN 684 (690)
Q Consensus 667 IDf~g~~~r~ViivgLPf 684 (690)
||+|+ +.+||+...|-
T Consensus 726 IDIp~--v~~VIi~~a~~ 741 (926)
T TIGR00580 726 IDIPN--ANTIIIERADK 741 (926)
T ss_pred ccccc--CCEEEEecCCC
Confidence 99997 67888877764
No 70
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=95.98 E-value=0.15 Score=60.40 Aligned_cols=89 Identities=10% Similarity=0.185 Sum_probs=60.8
Q ss_pred HHHHHhhhcccCcEEEEecc--------HHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCch-hHHHHHHHhhhccc
Q psy1221 579 MTITNLCTIVPKGMVCFFPS--------YDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKTS-EVDKVLSDYGTSVE 649 (690)
Q Consensus 579 ~~I~~l~~~~~gg~lVfF~S--------y~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~~-~~~~~l~~f~~~~~ 649 (690)
+.|.+.+ ...+.++||+|. +...+.+++.|.+. +...+..++-++.+. ++++++++|++.
T Consensus 462 ~~i~~~~-~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~--------~~~~~v~~lHG~m~~~eR~~i~~~F~~g-- 530 (681)
T PRK10917 462 ERIREEI-AKGRQAYVVCPLIEESEKLDLQSAEETYEELQEA--------FPELRVGLLHGRMKPAEKDAVMAAFKAG-- 530 (681)
T ss_pred HHHHHHH-HcCCcEEEEEcccccccchhHHHHHHHHHHHHHH--------CCCCcEEEEeCCCCHHHHHHHHHHHHcC--
Confidence 4444433 345578999984 44455666666632 112245556666443 899999999975
Q ss_pred CCceEEEEeeCcccccccccCCCcceEEEEEcCC
Q psy1221 650 KGGALMLSVIGGKLSEGLNFSDDLGRCVVVMCNS 683 (690)
Q Consensus 650 ~~~aiLfaV~gG~~sEGIDf~g~~~r~ViivgLP 683 (690)
+-.||+|+ ..+.+|||+|+ +++||+...|
T Consensus 531 -~~~ILVaT--~vie~GiDip~--v~~VIi~~~~ 559 (681)
T PRK10917 531 -EIDILVAT--TVIEVGVDVPN--ATVMVIENAE 559 (681)
T ss_pred -CCCEEEEC--cceeeCcccCC--CcEEEEeCCC
Confidence 56899888 88999999997 5778888776
No 71
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=95.95 E-value=0.069 Score=66.42 Aligned_cols=154 Identities=16% Similarity=0.221 Sum_probs=91.8
Q ss_pred HHHHHh--hcceEEEeCCCCCchhhHHHHhhccCCCCCCceEEEEeCCCccCCCeeEEEeecCCCCcceeeeccccCChH
Q psy1221 495 FTDIVQ--DARSIIVAGGTMEPVSEFKDQLFGSLGVPESRIHHFSCGHVIPKENILPLILCSGPTNRKFDLTFENRTKGD 572 (690)
Q Consensus 495 ~~~~~~--~~~svil~SgTLsP~~~f~~~l~~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 572 (690)
+++++. ....+|+||||+.+ +.|..++.. .+++.+. +..|+-+ +.+.+.... ....+..
T Consensus 202 Lk~il~~rpdLKlIlmSATld~-~~fa~~F~~------apvI~V~-Gr~~PVe---v~Y~~~~~~--------~~~~~~~ 262 (1283)
T TIGR01967 202 LKQLLPRRPDLKIIITSATIDP-ERFSRHFNN------APIIEVS-GRTYPVE---VRYRPLVEE--------QEDDDLD 262 (1283)
T ss_pred HHHHHhhCCCCeEEEEeCCcCH-HHHHHHhcC------CCEEEEC-CCcccce---eEEeccccc--------ccchhhh
Confidence 344442 23469999999965 677776621 2232222 2223322 111111000 0001234
Q ss_pred HHHHHHHHHHHhhhcccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCc-hhHHHHHHHhhhcccCC
Q psy1221 573 TLKEIAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKT-SEVDKVLSDYGTSVEKG 651 (690)
Q Consensus 573 ~~~~l~~~I~~l~~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~-~~~~~~l~~f~~~~~~~ 651 (690)
+.+.+.+.|.+++...+|.+|||+|+...++.+.+.+.+.+.. ....+-+-+..+ .+..++++.+ .+
T Consensus 263 ~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~-------~~~VlpLhg~Ls~~eQ~~vf~~~-----~~ 330 (1283)
T TIGR01967 263 QLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRKRNLR-------HTEILPLYARLSNKEQQRVFQPH-----SG 330 (1283)
T ss_pred HHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCC-------CcEEEeccCCCCHHHHHHHhCCC-----CC
Confidence 6677888888888777899999999999999999999854321 011112223322 2444554332 13
Q ss_pred ceEEEEeeCcccccccccCCCcceEEEEEcCC
Q psy1221 652 GALMLSVIGGKLSEGLNFSDDLGRCVVVMCNS 683 (690)
Q Consensus 652 ~aiLfaV~gG~~sEGIDf~g~~~r~ViivgLP 683 (690)
.-|++|+ ....-|||++| ++.||=.|+|
T Consensus 331 rkIVLAT--NIAEtSLTIpg--V~yVIDsGl~ 358 (1283)
T TIGR01967 331 RRIVLAT--NVAETSLTVPG--IHYVIDTGTA 358 (1283)
T ss_pred ceEEEec--cHHHhccccCC--eeEEEeCCCc
Confidence 4788888 88999999998 8889988876
No 72
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=95.84 E-value=0.12 Score=64.58 Aligned_cols=85 Identities=12% Similarity=0.225 Sum_probs=63.7
Q ss_pred HhhhcccCcEEEEeccH---HHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCchhHHHHHHHhhhcccCCceEEEEee
Q psy1221 583 NLCTIVPKGMVCFFPSY---DYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKTSEVDKVLSDYGTSVEKGGALMLSVI 659 (690)
Q Consensus 583 ~l~~~~~gg~lVfF~Sy---~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~~~~~~~l~~f~~~~~~~~aiLfaV~ 659 (690)
++++..++|.+||+++- ...+.+.+.+++.++. ...+.+... ++.+++|++. +--||.|+.
T Consensus 320 ~ll~~l~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~----------a~~lhg~~~---~~~l~~Fr~G---~~~vLVata 383 (1171)
T TIGR01054 320 EIVKKLGTGGIVYVSIDYGKEKAEEIAEFLENHGVK----------AVAYHATKP---KEDYEKFAEG---EIDVLIGVA 383 (1171)
T ss_pred HHHHHcCCCEEEEEeccccHHHHHHHHHHHHhCCce----------EEEEeCCCC---HHHHHHHHcC---CCCEEEEec
Confidence 34444457889999998 9999999999876532 233333322 4789999986 567999864
Q ss_pred --CcccccccccCCCcceEEEEEcCCC
Q psy1221 660 --GGKLSEGLNFSDDLGRCVVVMCNSN 684 (690)
Q Consensus 660 --gG~~sEGIDf~g~~~r~ViivgLPf 684 (690)
.|.++.|||+|+ ..|.||-+|+|=
T Consensus 384 ~~tdv~aRGIDip~-~V~~vI~~~~P~ 409 (1171)
T TIGR01054 384 SYYGTLVRGLDLPE-RVRYAVFLGVPK 409 (1171)
T ss_pred cccCcccccCCCCc-cccEEEEECCCC
Confidence 689999999997 678999999983
No 73
>PRK01172 ski2-like helicase; Provisional
Probab=95.62 E-value=0.25 Score=58.66 Aligned_cols=89 Identities=11% Similarity=0.117 Sum_probs=60.0
Q ss_pred ccCcEEEEeccHHHHHHHHHHHHhcCch---------------hHHHHHhcCceEEEcCCCc-hhHHHHHHHhhhcccCC
Q psy1221 588 VPKGMVCFFPSYDYEAIVYNYMRDNHFI---------------ERIARIAKKKVVFREPKKT-SEVDKVLSDYGTSVEKG 651 (690)
Q Consensus 588 ~~gg~lVfF~Sy~~l~~v~~~~~~~~~~---------------~~~~~~~~~~~i~~E~~~~-~~~~~~l~~f~~~~~~~ 651 (690)
.++.+|||.+|....+.+.+.+.+.... ....++.....-+.-.+.+ .++..+.+.|++. .
T Consensus 235 ~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g---~ 311 (674)
T PRK01172 235 DGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNR---Y 311 (674)
T ss_pred CCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcC---C
Confidence 4678999999999999998888643100 0001111122333333333 3788888899875 5
Q ss_pred ceEEEEeeCcccccccccCCCcceEEEEEcCCC
Q psy1221 652 GALMLSVIGGKLSEGLNFSDDLGRCVVVMCNSN 684 (690)
Q Consensus 652 ~aiLfaV~gG~~sEGIDf~g~~~r~ViivgLPf 684 (690)
-.||+|+ ..++.|||+|+ +.|||.+.|.
T Consensus 312 i~VLvaT--~~la~Gvnipa---~~VII~~~~~ 339 (674)
T PRK01172 312 IKVIVAT--PTLAAGVNLPA---RLVIVRDITR 339 (674)
T ss_pred CeEEEec--chhhccCCCcc---eEEEEcCceE
Confidence 6888888 88999999997 6888887653
No 74
>PRK14701 reverse gyrase; Provisional
Probab=95.39 E-value=0.18 Score=64.74 Aligned_cols=86 Identities=17% Similarity=0.251 Sum_probs=63.5
Q ss_pred HHHhhhcccCcEEEEeccHHH---HHHHHHHHHhcCchhHHHHHhcCceEEEcCCCchhHHHHHHHhhhcccCCceEEEE
Q psy1221 581 ITNLCTIVPKGMVCFFPSYDY---EAIVYNYMRDNHFIERIARIAKKKVVFREPKKTSEVDKVLSDYGTSVEKGGALMLS 657 (690)
Q Consensus 581 I~~l~~~~~gg~lVfF~Sy~~---l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~~~~~~~l~~f~~~~~~~~aiLfa 657 (690)
+.++++..+.+.+||++|-.- .+.+.+.+.+.++. ...+.. .+.+.+++|++. +.-||+|
T Consensus 322 L~~ll~~~g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~----------a~~~h~----~R~~~l~~F~~G---~~~VLVa 384 (1638)
T PRK14701 322 VRELLKKLGKGGLIFVPIDEGAEKAEEIEKYLLEDGFK----------IELVSA----KNKKGFDLFEEG---EIDYLIG 384 (1638)
T ss_pred HHHHHHhCCCCeEEEEeccccchHHHHHHHHHHHCCCe----------EEEecc----hHHHHHHHHHcC---CCCEEEE
Confidence 334444445688999998764 47888888876542 122222 367889999986 6789999
Q ss_pred ee--CcccccccccCCCcceEEEEEcCCC
Q psy1221 658 VI--GGKLSEGLNFSDDLGRCVVVMCNSN 684 (690)
Q Consensus 658 V~--gG~~sEGIDf~g~~~r~ViivgLPf 684 (690)
+. .|.++.|||+|+ ..|-||=.|+|=
T Consensus 385 T~s~~gvaaRGIDiP~-~Vryvi~~~~Pk 412 (1638)
T PRK14701 385 VATYYGTLVRGLDLPE-RIRFAVFYGVPK 412 (1638)
T ss_pred ecCCCCeeEecCccCC-ccCEEEEeCCCC
Confidence 94 378999999997 789999999994
No 75
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=95.21 E-value=0.35 Score=52.50 Aligned_cols=70 Identities=11% Similarity=0.207 Sum_probs=50.7
Q ss_pred ccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCch-hHHH----HHHHhhhcccCCceEEEEeeCcc
Q psy1221 588 VPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKTS-EVDK----VLSDYGTSVEKGGALMLSVIGGK 662 (690)
Q Consensus 588 ~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~~-~~~~----~l~~f~~~~~~~~aiLfaV~gG~ 662 (690)
.++.+|||+++....+.+++.+++.+.. .....+-++... ++.+ ++++|++. +..+|+|+ ..
T Consensus 221 ~~~~~lVf~~t~~~~~~~~~~L~~~~~~--------~~~~~~h~~~~~~~r~~~~~~~~~~f~~~---~~~ilvaT--~~ 287 (358)
T TIGR01587 221 KGGKIAIIVNTVDRAQEFYQQLKENAPE--------EEIMLLHSRFTEKDRAKKEAELLEEMKKN---EKFVIVAT--QV 287 (358)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhhcCC--------CeEEEEECCCCHHHHHHHHHHHHHHhcCC---CCeEEEEC--cc
Confidence 4678999999999999999999854321 123444444332 4433 58888875 56788888 88
Q ss_pred cccccccC
Q psy1221 663 LSEGLNFS 670 (690)
Q Consensus 663 ~sEGIDf~ 670 (690)
+++|||++
T Consensus 288 ~~~GiDi~ 295 (358)
T TIGR01587 288 IEASLDIS 295 (358)
T ss_pred hhceeccC
Confidence 99999996
No 76
>KOG0343|consensus
Probab=95.18 E-value=0.59 Score=52.25 Aligned_cols=80 Identities=13% Similarity=0.149 Sum_probs=59.4
Q ss_pred ccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCch--hHHHHHHHhhhcccCCceEEEEeeCccccc
Q psy1221 588 VPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKTS--EVDKVLSDYGTSVEKGGALMLSVIGGKLSE 665 (690)
Q Consensus 588 ~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~~--~~~~~l~~f~~~~~~~~aiLfaV~gG~~sE 665 (690)
..-.++|||+|-....-+|+.+.+. ....+++.-.+.++ .+-++..+|-+. ..+||||+ ...+.
T Consensus 312 lk~K~iVF~SscKqvkf~~e~F~rl---------rpg~~l~~L~G~~~Q~~R~ev~~~F~~~---~~~vLF~T--Dv~aR 377 (758)
T KOG0343|consen 312 LKKKSIVFLSSCKQVKFLYEAFCRL---------RPGIPLLALHGTMSQKKRIEVYKKFVRK---RAVVLFCT--DVAAR 377 (758)
T ss_pred cccceEEEEehhhHHHHHHHHHHhc---------CCCCceeeeccchhHHHHHHHHHHHHHh---cceEEEee--hhhhc
Confidence 3467899999999999988877643 33345554444333 566778888776 78999999 99999
Q ss_pred ccccCCCcceEEEEEcCC
Q psy1221 666 GLNFSDDLGRCVVVMCNS 683 (690)
Q Consensus 666 GIDf~g~~~r~ViivgLP 683 (690)
|+||| ..-+||=+--|
T Consensus 378 GLDFp--aVdwViQ~DCP 393 (758)
T KOG0343|consen 378 GLDFP--AVDWVIQVDCP 393 (758)
T ss_pred cCCCc--ccceEEEecCc
Confidence 99999 67777765544
No 77
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=95.12 E-value=0.43 Score=56.15 Aligned_cols=80 Identities=11% Similarity=0.269 Sum_probs=56.2
Q ss_pred cCcEEEEeccHH--------HHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCch-hHHHHHHHhhhcccCCceEEEEee
Q psy1221 589 PKGMVCFFPSYD--------YEAIVYNYMRDNHFIERIARIAKKKVVFREPKKTS-EVDKVLSDYGTSVEKGGALMLSVI 659 (690)
Q Consensus 589 ~gg~lVfF~Sy~--------~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~~-~~~~~l~~f~~~~~~~~aiLfaV~ 659 (690)
...++||+|..+ ..+.+++.|.+ .+...+..++-++.+. ++.+++++|++. +..||+|+
T Consensus 448 g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~--------~~~~~~v~~lHG~m~~~eR~~i~~~F~~g---~~~ILVaT- 515 (630)
T TIGR00643 448 GRQAYVVYPLIEESEKLDLKAAEALYERLKK--------AFPKYNVGLLHGRMKSDEKEAVMEEFREG---EVDILVAT- 515 (630)
T ss_pred CCcEEEEEccccccccchHHHHHHHHHHHHh--------hCCCCcEEEEeCCCCHHHHHHHHHHHHcC---CCCEEEEC-
Confidence 457889998753 33444444542 1222344556665443 889999999986 67899988
Q ss_pred CcccccccccCCCcceEEEEEcCC
Q psy1221 660 GGKLSEGLNFSDDLGRCVVVMCNS 683 (690)
Q Consensus 660 gG~~sEGIDf~g~~~r~ViivgLP 683 (690)
..+.+|||+|+ +++||+...|
T Consensus 516 -~vie~GvDiP~--v~~VIi~~~~ 536 (630)
T TIGR00643 516 -TVIEVGVDVPN--ATVMVIEDAE 536 (630)
T ss_pred -ceeecCcccCC--CcEEEEeCCC
Confidence 78999999998 6778888766
No 78
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=95.11 E-value=0.077 Score=62.56 Aligned_cols=142 Identities=16% Similarity=0.111 Sum_probs=89.7
Q ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCCcceeEEEEEEcCC--Ccce-------Eeeccchh-hhhhhcCCCCCCCCcc
Q psy1221 50 IKLLFHYCQIYGLKDTIVFDLSLARGLDYYTGVIYEAVLKDQ--AVGS-------VAGGGRYD-NLVGMFDPKNKTTPCV 119 (690)
Q Consensus 50 l~~~~~~l~~~g~~~~i~~d~~~~r~~~YYtG~vFe~~~~~~--~~~~-------i~~GGRYD-~L~~~f~~~~~~~~~~ 119 (690)
...+.+.|...|++ +..+ .+..+|.|..++...... .... +..++||| ...+.-|. ...|.+
T Consensus 438 ~~~l~~~l~~~g~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~dl~Yt~~~~~--~~~p~~ 509 (638)
T PRK00413 438 EAALKEALDELGLD--YEIA----PGEGAFYGPKIDFQLKDALGREWQCGTIQLDFNLPERFDLTYVGEDGE--KHRPVM 509 (638)
T ss_pred HHHHHHHHHHcCCC--ceec----CCccccccceEEEEeecCCCCeEEeccEeecccChhhcCCEEECCCCC--ccCcEE
Confidence 35566667777775 4444 344556688777654331 1011 33457787 23333332 234544
Q ss_pred --chhhhhhhhcccccccCcceeeeeHHHHHHHHHhhhhccCCcccCCceeEEEEeCCccchHHHHhHhhhhhcCC-ccc
Q psy1221 120 --AAKLLHEVQGLLETSCRSCREDIGVERLFSIIENRNAEQGVKVKTTSTQVYVASAQKNLVEPRMQLCHELWGGE-KTQ 196 (690)
Q Consensus 120 --g~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~l~~~L~~~~-i~~ 196 (690)
+ |+.-++||++.++.+..... ...+..+.+|+|++.++.....++++++.||+.+ .+.
T Consensus 510 i~~------------------~~~g~~eRli~~l~e~~~~~-~p~~~~p~~v~Ii~~~~~~~~~a~~i~~~Lr~~gi~v~ 570 (638)
T PRK00413 510 IHR------------------AILGSMERFIGILIEHYAGA-FPTWLAPVQVVVLPITDKHADYAKEVAKKLKAAGIRVE 570 (638)
T ss_pred EEe------------------cceehHHHHHHHHHHHcCCC-CCcccCcceEEEEEeChhHHHHHHHHHHHHHhCCCEEE
Confidence 2 35558999999985431100 1122356789999999888888999999999865 445
Q ss_pred CCcccccHHHHHhhhhhcCCCC
Q psy1221 197 EKPKLSGLQSFLKGVQENNPNL 218 (690)
Q Consensus 197 ~~~~~~~Lk~~lk~~~kl~~~~ 218 (690)
.+....++.+.++.+++.+...
T Consensus 571 ~d~~~~~l~kki~~A~~~g~~~ 592 (638)
T PRK00413 571 VDLRNEKIGYKIREAQLQKVPY 592 (638)
T ss_pred EECCCCCHhHHHHHhhccCCCE
Confidence 5666788999999999887653
No 79
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=95.09 E-value=0.39 Score=52.38 Aligned_cols=83 Identities=11% Similarity=0.141 Sum_probs=52.9
Q ss_pred hHHHHHHHHHHHHhhhcc-cCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCch-hHHHHHHHhhhcc
Q psy1221 571 GDTLKEIAMTITNLCTIV-PKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKTS-EVDKVLSDYGTSV 648 (690)
Q Consensus 571 ~~~~~~l~~~I~~l~~~~-~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~~-~~~~~l~~f~~~~ 648 (690)
.+.+..+++.+.+..+.. ++.+|||+++....+.+++.+++.+.. .+....-+.... ++.+ ..
T Consensus 253 ~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~--------~~~~~l~g~~~~~~R~~------~~- 317 (357)
T TIGR03158 253 EEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLG--------DDIGRITGFAPKKDRER------AM- 317 (357)
T ss_pred HHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCC--------ceEEeeecCCCHHHHHH------hc-
Confidence 345566667666655443 457999999999999999999854311 011122222222 1211 11
Q ss_pred cCCceEEEEeeCcccccccccCCC
Q psy1221 649 EKGGALMLSVIGGKLSEGLNFSDD 672 (690)
Q Consensus 649 ~~~~aiLfaV~gG~~sEGIDf~g~ 672 (690)
+..||+|+ ..++.|||++++
T Consensus 318 --~~~iLVaT--dv~~rGiDi~~~ 337 (357)
T TIGR03158 318 --QFDILLGT--STVDVGVDFKRD 337 (357)
T ss_pred --cCCEEEEe--cHHhcccCCCCc
Confidence 35788888 889999999986
No 80
>KOG0345|consensus
Probab=95.01 E-value=0.088 Score=57.50 Aligned_cols=87 Identities=20% Similarity=0.261 Sum_probs=60.0
Q ss_pred HHHHHhhhcccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEE-EcCCCch-hHHHHHHHhhhcccCCceEEE
Q psy1221 579 MTITNLCTIVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVF-REPKKTS-EVDKVLSDYGTSVEKGGALML 656 (690)
Q Consensus 579 ~~I~~l~~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~-~E~~~~~-~~~~~l~~f~~~~~~~~aiLf 656 (690)
..+.-+.+.....++||||+-...+-.+..+. ++.....+| +-++... ++.+.++.|++. ..++||
T Consensus 245 ~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~---------~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~---~~~vl~ 312 (567)
T KOG0345|consen 245 QLVHLLNNNKDKKCIVFFPTCASVEYFGKLFS---------RLLKKREIFSIHGKMSQKARAKVLEAFRKL---SNGVLF 312 (567)
T ss_pred HHHHHHhccccccEEEEecCcchHHHHHHHHH---------HHhCCCcEEEecchhcchhHHHHHHHHHhc---cCceEE
Confidence 33444444677899999999877665554443 333333444 4454443 689999999996 689999
Q ss_pred EeeCcccccccccCCCcceEEEEEc
Q psy1221 657 SVIGGKLSEGLNFSDDLGRCVVVMC 681 (690)
Q Consensus 657 aV~gG~~sEGIDf~g~~~r~Viivg 681 (690)
|+ ...+.|||+|| ...||=.-
T Consensus 313 ~T--DVaARGlDip~--iD~VvQ~D 333 (567)
T KOG0345|consen 313 CT--DVAARGLDIPG--IDLVVQFD 333 (567)
T ss_pred ee--hhhhccCCCCC--ceEEEecC
Confidence 98 99999999998 44555433
No 81
>PRK10689 transcription-repair coupling factor; Provisional
Probab=94.98 E-value=0.31 Score=60.84 Aligned_cols=77 Identities=5% Similarity=0.207 Sum_probs=59.2
Q ss_pred cCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCch-hHHHHHHHhhhcccCCceEEEEeeCccccccc
Q psy1221 589 PKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKTS-EVDKVLSDYGTSVEKGGALMLSVIGGKLSEGL 667 (690)
Q Consensus 589 ~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~~-~~~~~l~~f~~~~~~~~aiLfaV~gG~~sEGI 667 (690)
.|.++||+++-..++.+++.+++.. ...+.....++++. ++++++.+|++. +-.||+|+ .-++.||
T Consensus 809 ~gqv~vf~n~i~~ie~la~~L~~~~--------p~~~v~~lHG~m~q~eRe~im~~Fr~G---k~~VLVaT--dIierGI 875 (1147)
T PRK10689 809 GGQVYYLYNDVENIQKAAERLAELV--------PEARIAIGHGQMRERELERVMNDFHHQ---RFNVLVCT--TIIETGI 875 (1147)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhC--------CCCcEEEEeCCCCHHHHHHHHHHHHhc---CCCEEEEC--chhhccc
Confidence 5679999999999999998888531 12234445555443 788999999986 67899888 8899999
Q ss_pred ccCCCcceEEEEE
Q psy1221 668 NFSDDLGRCVVVM 680 (690)
Q Consensus 668 Df~g~~~r~Viiv 680 (690)
|+|+ +++|||.
T Consensus 876 DIP~--v~~VIi~ 886 (1147)
T PRK10689 876 DIPT--ANTIIIE 886 (1147)
T ss_pred cccc--CCEEEEe
Confidence 9998 7777764
No 82
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=94.83 E-value=0.37 Score=56.18 Aligned_cols=153 Identities=10% Similarity=0.121 Sum_probs=91.3
Q ss_pred hhHHHHHhhcceEEEeCCCCCch-hhHHHHhhccCCCCCCceEEEEeCCCccCCCeeEEEeecCCCCcceeeeccccCCh
Q psy1221 493 NHFTDIVQDARSIIVAGGTMEPV-SEFKDQLFGSLGVPESRIHHFSCGHVIPKENILPLILCSGPTNRKFDLTFENRTKG 571 (690)
Q Consensus 493 ~~~~~~~~~~~svil~SgTLsP~-~~f~~~l~~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 571 (690)
..++.++.....+--+|||.... +.|...+ +++ +..+....|........+ -|.+ ..
T Consensus 399 It~q~~Fr~Y~kl~GmTGTa~~~~~El~~~y----~l~---vv~IPt~kp~~r~~~~~~-------------v~~t--~~ 456 (656)
T PRK12898 399 ITYQRFFRRYLRLAGMTGTAREVAGELWSVY----GLP---VVRIPTNRPSQRRHLPDE-------------VFLT--AA 456 (656)
T ss_pred ehHHHHHHhhHHHhcccCcChHHHHHHHHHH----CCC---eEEeCCCCCccceecCCE-------------EEeC--HH
Confidence 55667777777888899999653 2343333 443 222211111110000001 1111 23
Q ss_pred HHHHHHHHHHHHhhhcccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCchhHHHHHHHhhhcccCC
Q psy1221 572 DTLKEIAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKTSEVDKVLSDYGTSVEKG 651 (690)
Q Consensus 572 ~~~~~l~~~I~~l~~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~~~~~~~l~~f~~~~~~~ 651 (690)
+-...+.+.|.+... .+..+|||+.|-...+.+.+.+.+.++. ...+-.. ..+.+..+..+... .
T Consensus 457 ~K~~aL~~~i~~~~~-~~~pvLIft~t~~~se~L~~~L~~~gi~----------~~~Lhg~-~~~rE~~ii~~ag~---~ 521 (656)
T PRK12898 457 AKWAAVAARVRELHA-QGRPVLVGTRSVAASERLSALLREAGLP----------HQVLNAK-QDAEEAAIVARAGQ---R 521 (656)
T ss_pred HHHHHHHHHHHHHHh-cCCCEEEEeCcHHHHHHHHHHHHHCCCC----------EEEeeCC-cHHHHHHHHHHcCC---C
Confidence 345556666665432 3456999999999999999999976543 3333333 33455666665543 5
Q ss_pred ceEEEEeeCcccccccccC-CCcce-----EEEEEcCCC
Q psy1221 652 GALMLSVIGGKLSEGLNFS-DDLGR-----CVVVMCNSN 684 (690)
Q Consensus 652 ~aiLfaV~gG~~sEGIDf~-g~~~r-----~ViivgLPf 684 (690)
+.|++|+ .-.+.|+|++ ++..+ +||..-+|-
T Consensus 522 g~VlVAT--dmAgRGtDI~l~~~V~~~GGLhVI~~d~P~ 558 (656)
T PRK12898 522 GRITVAT--NMAGRGTDIKLEPGVAARGGLHVILTERHD 558 (656)
T ss_pred CcEEEEc--cchhcccCcCCccchhhcCCCEEEEcCCCC
Confidence 7899887 8899999998 33344 888888774
No 83
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=94.80 E-value=0.1 Score=42.88 Aligned_cols=54 Identities=11% Similarity=0.142 Sum_probs=41.8
Q ss_pred eEEEcCCCc-hhHHHHHHHhhhcccCCceEEEEeeCcccccccccCCCcceEEEEEcCCCCC
Q psy1221 626 VVFREPKKT-SEVDKVLSDYGTSVEKGGALMLSVIGGKLSEGLNFSDDLGRCVVVMCNSNPL 686 (690)
Q Consensus 626 ~i~~E~~~~-~~~~~~l~~f~~~~~~~~aiLfaV~gG~~sEGIDf~g~~~r~ViivgLPfp~ 686 (690)
.+.+-+..+ .++.++++.|.+. ...+|+++ ..++||+|+++ ++.||+.+.|+..
T Consensus 14 ~~~~~~~~~~~~r~~~~~~f~~~---~~~vli~t--~~~~~Gi~~~~--~~~vi~~~~~~~~ 68 (82)
T smart00490 14 VARLHGGLSQEEREEILEKFNNG---KIKVLVAT--DVAERGLDLPG--VDLVIIYDLPWSP 68 (82)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC---CCeEEEEC--ChhhCCcChhc--CCEEEEeCCCCCH
Confidence 344444333 3778899999876 56888877 78999999987 8999999998754
No 84
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=94.77 E-value=0.43 Score=57.12 Aligned_cols=83 Identities=13% Similarity=0.215 Sum_probs=55.4
Q ss_pred HHHHHHHHhhhcccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCch-hHH-----HHHHHhhh---
Q psy1221 576 EIAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKTS-EVD-----KVLSDYGT--- 646 (690)
Q Consensus 576 ~l~~~I~~l~~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~~-~~~-----~~l~~f~~--- 646 (690)
.+...+..+....++.+|||+++-...+.+++.+++.++ +++-++... ++. .++++|+.
T Consensus 259 ~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~------------~lLHG~m~q~dR~~~~~~~il~~Fk~~~~ 326 (844)
T TIGR02621 259 TMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF------------ELLTGTLRGAERDDLVKKEIFNRFLPQML 326 (844)
T ss_pred HHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC------------eEeeCCCCHHHHhhHHHHHHHHHHhcccc
Confidence 333444444445567799999999999999999985431 344444433 566 67889986
Q ss_pred -cc----cCCceEEEEeeCcccccccccCCC
Q psy1221 647 -SV----EKGGALMLSVIGGKLSEGLNFSDD 672 (690)
Q Consensus 647 -~~----~~~~aiLfaV~gG~~sEGIDf~g~ 672 (690)
.. ..+..||+|+ ..+..|||++.+
T Consensus 327 ~g~~~~~~~g~~ILVAT--dVaerGLDId~d 355 (844)
T TIGR02621 327 SGSRARPQQGTVYLVCT--SAGEVGVNISAD 355 (844)
T ss_pred ccccccccccceEEecc--chhhhcccCCcc
Confidence 21 0013467666 889999999863
No 85
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=94.73 E-value=0.71 Score=58.65 Aligned_cols=91 Identities=7% Similarity=0.046 Sum_probs=59.9
Q ss_pred cCcEEEEeccHHHHHHHHHHHHhcCchh---------HHHHHhc-----------C--ceE-EEcCCCc-hhHHHHHHHh
Q psy1221 589 PKGMVCFFPSYDYEAIVYNYMRDNHFIE---------RIARIAK-----------K--KVV-FREPKKT-SEVDKVLSDY 644 (690)
Q Consensus 589 ~gg~lVfF~Sy~~l~~v~~~~~~~~~~~---------~~~~~~~-----------~--~~i-~~E~~~~-~~~~~~l~~f 644 (690)
...+|||..|...-+.+...+++..... ....+.+ . ..+ +.-...+ .++..+.+.|
T Consensus 244 ~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~f 323 (1490)
T PRK09751 244 HRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQAL 323 (1490)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHHH
Confidence 4678999999999999998887531000 0000000 0 011 2223322 3788999999
Q ss_pred hhcccCCceEEEEeeCcccccccccCCCcceEEEEEcCCCCC
Q psy1221 645 GTSVEKGGALMLSVIGGKLSEGLNFSDDLGRCVVVMCNSNPL 686 (690)
Q Consensus 645 ~~~~~~~~aiLfaV~gG~~sEGIDf~g~~~r~ViivgLPfp~ 686 (690)
++. .-.+|.|+ .++.-|||+++ +..||.+|.|+..
T Consensus 324 K~G---~LrvLVAT--ssLELGIDIg~--VDlVIq~gsP~sV 358 (1490)
T PRK09751 324 KSG---ELRCVVAT--SSLELGIDMGA--VDLVIQVATPLSV 358 (1490)
T ss_pred HhC---CceEEEeC--cHHHccCCccc--CCEEEEeCCCCCH
Confidence 975 44666666 88999999875 7899999999653
No 86
>PHA02558 uvsW UvsW helicase; Provisional
Probab=94.66 E-value=0.26 Score=56.28 Aligned_cols=81 Identities=12% Similarity=0.169 Sum_probs=59.2
Q ss_pred cccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCch-hHHHHHHHhhhcccCCceEEEEeeCccccc
Q psy1221 587 IVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKTS-EVDKVLSDYGTSVEKGGALMLSVIGGKLSE 665 (690)
Q Consensus 587 ~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~~-~~~~~l~~f~~~~~~~~aiLfaV~gG~~sE 665 (690)
..+++++|||.+-+..+.+++.+++.+. +..++.+..+. ++..+++.|+.. +..+|+|. ++-++|
T Consensus 342 ~~~~~~lV~~~~~~h~~~L~~~L~~~g~----------~v~~i~G~~~~~eR~~i~~~~~~~---~~~vLvaT-~~~l~e 407 (501)
T PHA02558 342 KKGENTFVMFKYVEHGKPLYEMLKKVYD----------KVYYVSGEVDTEDRNEMKKIAEGG---KGIIIVAS-YGVFST 407 (501)
T ss_pred hcCCCEEEEEEEHHHHHHHHHHHHHcCC----------CEEEEeCCCCHHHHHHHHHHHhCC---CCeEEEEE-cceecc
Confidence 3467899999999999999998886542 35556665543 788888888764 44567664 368999
Q ss_pred ccccCCCcceEEEEEcCC
Q psy1221 666 GLNFSDDLGRCVVVMCNS 683 (690)
Q Consensus 666 GIDf~g~~~r~ViivgLP 683 (690)
|||+|+ +.+||+...|
T Consensus 408 G~Dip~--ld~vIl~~p~ 423 (501)
T PHA02558 408 GISIKN--LHHVIFAHPS 423 (501)
T ss_pred cccccc--ccEEEEecCC
Confidence 999996 7778765433
No 87
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=94.66 E-value=0.69 Score=53.03 Aligned_cols=89 Identities=13% Similarity=0.128 Sum_probs=66.9
Q ss_pred HHHHHhhhcc-cCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCc-hhHHHHHHHhhhcccCCceEEE
Q psy1221 579 MTITNLCTIV-PKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKT-SEVDKVLSDYGTSVEKGGALML 656 (690)
Q Consensus 579 ~~I~~l~~~~-~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~-~~~~~~l~~f~~~~~~~~aiLf 656 (690)
..+..+++.. ++.++||+.+....+.+...|...++. ...+-+..+ .++...+++|++. +-.||+
T Consensus 262 ~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~----------~~~lhG~l~q~~R~~~l~~F~~g---~~~vLV 328 (513)
T COG0513 262 ELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFK----------VAALHGDLPQEERDRALEKFKDG---ELRVLV 328 (513)
T ss_pred HHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCCe----------EEEecCCCCHHHHHHHHHHHHcC---CCCEEE
Confidence 3444555543 345999999999999999999977632 344444433 4899999999976 678999
Q ss_pred EeeCcccccccccCCCcceEEEEEcCCC
Q psy1221 657 SVIGGKLSEGLNFSDDLGRCVVVMCNSN 684 (690)
Q Consensus 657 aV~gG~~sEGIDf~g~~~r~ViivgLPf 684 (690)
|+ +..++|||+++ +..||=.=+|.
T Consensus 329 aT--DvaaRGiDi~~--v~~VinyD~p~ 352 (513)
T COG0513 329 AT--DVAARGLDIPD--VSHVINYDLPL 352 (513)
T ss_pred Ee--chhhccCCccc--cceeEEccCCC
Confidence 88 99999999997 67777666664
No 88
>KOG0342|consensus
Probab=94.63 E-value=0.3 Score=53.82 Aligned_cols=77 Identities=13% Similarity=0.167 Sum_probs=57.3
Q ss_pred CcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCC-CchhHHHHHHHhhhcccCCceEEEEeeCcccccccc
Q psy1221 590 KGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPK-KTSEVDKVLSDYGTSVEKGGALMLSVIGGKLSEGLN 668 (690)
Q Consensus 590 gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~-~~~~~~~~l~~f~~~~~~~~aiLfaV~gG~~sEGID 668 (690)
-.++|||||-..-.-+++.++...+. ..-+-++ ....+..+..+|+++ +..||+|+ ..-+.|+|
T Consensus 331 ~KiiVF~sT~~~vk~~~~lL~~~dlp----------v~eiHgk~~Q~kRT~~~~~F~ka---esgIL~cT--DVaARGlD 395 (543)
T KOG0342|consen 331 YKIIVFFSTCMSVKFHAELLNYIDLP----------VLEIHGKQKQNKRTSTFFEFCKA---ESGILVCT--DVAARGLD 395 (543)
T ss_pred ceEEEEechhhHHHHHHHHHhhcCCc----------hhhhhcCCcccccchHHHHHhhc---ccceEEec--chhhccCC
Confidence 68999999988887777777743221 1111122 223567789999987 89999988 99999999
Q ss_pred cCCCcceEEEEEcCC
Q psy1221 669 FSDDLGRCVVVMCNS 683 (690)
Q Consensus 669 f~g~~~r~ViivgLP 683 (690)
||+ ...||=+|+|
T Consensus 396 ~P~--V~~VvQ~~~P 408 (543)
T KOG0342|consen 396 IPD--VDWVVQYDPP 408 (543)
T ss_pred CCC--ceEEEEeCCC
Confidence 997 7888888877
No 89
>KOG0332|consensus
Probab=94.15 E-value=0.92 Score=48.51 Aligned_cols=143 Identities=13% Similarity=0.156 Sum_probs=94.8
Q ss_pred hhcceEEEeCCCCC-chhhHHHHhhccCCCCCCceEE--EEeCCCccCCCeeEEEeecCCCCcceeeeccccCChHHHHH
Q psy1221 500 QDARSIIVAGGTME-PVSEFKDQLFGSLGVPESRIHH--FSCGHVIPKENILPLILCSGPTNRKFDLTFENRTKGDTLKE 576 (690)
Q Consensus 500 ~~~~svil~SgTLs-P~~~f~~~l~~~~Gl~~~~~~~--~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 576 (690)
.....+++.|||.. +...|...+ +++.++.. -+.-|.++-.|+.+.+. .|+ .-++.
T Consensus 262 P~~~QllLFSATf~e~V~~Fa~ki-----vpn~n~i~Lk~eel~L~~IkQlyv~C~--------------~~~--~K~~~ 320 (477)
T KOG0332|consen 262 PRNQQLLLFSATFVEKVAAFALKI-----VPNANVIILKREELALDNIKQLYVLCA--------------CRD--DKYQA 320 (477)
T ss_pred CCcceEEeeechhHHHHHHHHHHh-----cCCCceeeeehhhccccchhhheeecc--------------chh--hHHHH
Confidence 34567899999993 455665555 23333332 23446666666655543 223 33454
Q ss_pred HHHHHHHhhhc-ccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCc-hhHHHHHHHhhhcccCCceE
Q psy1221 577 IAMTITNLCTI-VPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKT-SEVDKVLSDYGTSVEKGGAL 654 (690)
Q Consensus 577 l~~~I~~l~~~-~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~-~~~~~~l~~f~~~~~~~~ai 654 (690)
+.+ +... .=|..++|+...+..+.+++.+...|.. .-++-+... .++..++++|+++ ...|
T Consensus 321 l~~----lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~----------V~~l~G~l~~~~R~~ii~~Fr~g---~~kV 383 (477)
T KOG0332|consen 321 LVN----LYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQ----------VSLLHGDLTVEQRAAIIDRFREG---KEKV 383 (477)
T ss_pred HHH----HHhhhhhhheEEEEeehhhHHHHHHHHHhcCce----------eEEeeccchhHHHHHHHHHHhcC---cceE
Confidence 444 3332 3477899999999999999999987643 122223222 3899999999997 6789
Q ss_pred EEEeeCcccccccccCCCcceEEEEEcCCC
Q psy1221 655 MLSVIGGKLSEGLNFSDDLGRCVVVMCNSN 684 (690)
Q Consensus 655 LfaV~gG~~sEGIDf~g~~~r~ViivgLPf 684 (690)
|.++ ..++.|||.+ ....||=.-||-
T Consensus 384 LitT--nV~ARGiDv~--qVs~VvNydlP~ 409 (477)
T KOG0332|consen 384 LITT--NVCARGIDVA--QVSVVVNYDLPV 409 (477)
T ss_pred EEEe--chhhcccccc--eEEEEEecCCcc
Confidence 9988 8999999987 466677666764
No 90
>PRK02362 ski2-like helicase; Provisional
Probab=94.07 E-value=1.1 Score=53.84 Aligned_cols=86 Identities=16% Similarity=0.103 Sum_probs=56.3
Q ss_pred ccCcEEEEeccHHHHHHHHHHHHhcCc-----------hhHHHHHh---------------cCceEEEcCCCc-hhHHHH
Q psy1221 588 VPKGMVCFFPSYDYEAIVYNYMRDNHF-----------IERIARIA---------------KKKVVFREPKKT-SEVDKV 640 (690)
Q Consensus 588 ~~gg~lVfF~Sy~~l~~v~~~~~~~~~-----------~~~~~~~~---------------~~~~i~~E~~~~-~~~~~~ 640 (690)
.++.+|||++|....+.+.+.+..... ..+.+.+. ....-+.-.+.+ .++..+
T Consensus 242 ~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~v 321 (737)
T PRK02362 242 EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELV 321 (737)
T ss_pred cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHH
Confidence 467899999999998888877764311 00001110 112233333333 378899
Q ss_pred HHHhhhcccCCceEEEEeeCcccccccccCCCcceEEEEEc
Q psy1221 641 LSDYGTSVEKGGALMLSVIGGKLSEGLNFSDDLGRCVVVMC 681 (690)
Q Consensus 641 l~~f~~~~~~~~aiLfaV~gG~~sEGIDf~g~~~r~Viivg 681 (690)
.+.|++. .-.||+|+ ..++.|||+|+ +.|||-+
T Consensus 322 e~~Fr~G---~i~VLvaT--~tla~GvnlPa---~~VVI~~ 354 (737)
T PRK02362 322 EDAFRDR---LIKVISST--PTLAAGLNLPA---RRVIIRD 354 (737)
T ss_pred HHHHHcC---CCeEEEec--hhhhhhcCCCc---eEEEEec
Confidence 9999875 45788877 88999999997 4577754
No 91
>PF12745 HGTP_anticodon2: Anticodon binding domain of tRNAs; InterPro: IPR024435 This is an anticodon binding domain, found largely on Gcn2 proteins which bind tRNA to down regulate translation in certain stress situations [].; GO: 0000049 tRNA binding
Probab=94.03 E-value=0.063 Score=56.02 Aligned_cols=57 Identities=14% Similarity=0.208 Sum_probs=45.6
Q ss_pred ccCCceeEEEEeCCccch-HHHHhHhhhhhcCCcccCC-cc-cccHHHHHhhhhhcCCCC
Q psy1221 162 VKTTSTQVYVASAQKNLV-EPRMQLCHELWGGEKTQEK-PK-LSGLQSFLKGVQENNPNL 218 (690)
Q Consensus 162 ~~~~~~~v~v~~~~~~~~-~~~~~l~~~L~~~~i~~~~-~~-~~~Lk~~lk~~~kl~~~~ 218 (690)
|.+.+|||||++++...+ ..+++|++.||.+++.+.- +. ..++.++...+...+...
T Consensus 1 W~~~RCDVLV~S~~~~~L~~~~~~iv~~LW~~gIsAd~~~~~~~S~Eel~~~~~~~gi~w 60 (273)
T PF12745_consen 1 WKPSRCDVLVCSFGPSSLRTEGIEIVQELWAAGISADLMYDASPSQEELQSYCREDGISW 60 (273)
T ss_pred CCCCcceEEEEeCChhHHHHHHHHHHHHHHHCCCceEeccccCCCHHHHHHHHHHCCCCE
Confidence 456899999999999887 7999999999998776553 44 358899988887766533
No 92
>PRK00254 ski2-like helicase; Provisional
Probab=93.56 E-value=1.5 Score=52.56 Aligned_cols=96 Identities=13% Similarity=0.071 Sum_probs=57.8
Q ss_pred HHHHHHHhhhcccCcEEEEeccHHHHHHHHHHHHhcCc-----------hhHHHHH------------hcCceEEEcCCC
Q psy1221 577 IAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYMRDNHF-----------IERIARI------------AKKKVVFREPKK 633 (690)
Q Consensus 577 l~~~I~~l~~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~-----------~~~~~~~------------~~~~~i~~E~~~ 633 (690)
+...+.+.++ .++.+|||.+|....+.+...+.+... ....+.+ -.....+.-...
T Consensus 227 ~~~~~~~~i~-~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl 305 (720)
T PRK00254 227 WESLVYDAVK-KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGL 305 (720)
T ss_pred HHHHHHHHHH-hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCC
Confidence 3444444443 467899999999988777655542100 0000111 111233444443
Q ss_pred c-hhHHHHHHHhhhcccCCceEEEEeeCcccccccccCCCcceEEEEEc
Q psy1221 634 T-SEVDKVLSDYGTSVEKGGALMLSVIGGKLSEGLNFSDDLGRCVVVMC 681 (690)
Q Consensus 634 ~-~~~~~~l~~f~~~~~~~~aiLfaV~gG~~sEGIDf~g~~~r~Viivg 681 (690)
+ .++..+.+.|++. .-.||+|+ -.++.|||+|+ +.|||.+
T Consensus 306 ~~~eR~~ve~~F~~G---~i~VLvaT--~tLa~Gvnipa---~~vVI~~ 346 (720)
T PRK00254 306 GRTERVLIEDAFREG---LIKVITAT--PTLSAGINLPA---FRVIIRD 346 (720)
T ss_pred CHHHHHHHHHHHHCC---CCeEEEeC--cHHhhhcCCCc---eEEEECC
Confidence 3 3788888999875 45778777 78999999996 4566643
No 93
>KOG0333|consensus
Probab=93.51 E-value=1.3 Score=49.47 Aligned_cols=81 Identities=10% Similarity=0.213 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhhhcccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCC-chhHHHHHHHhhhcccCCc
Q psy1221 574 LKEIAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKK-TSEVDKVLSDYGTSVEKGG 652 (690)
Q Consensus 574 ~~~l~~~I~~l~~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~-~~~~~~~l~~f~~~~~~~~ 652 (690)
..++.+.+.+. ....++||..-..-.+.+.+.|.+.++. ...+-++. ..+++..|+.|+.. .+
T Consensus 505 ~kkL~eil~~~---~~ppiIIFvN~kk~~d~lAk~LeK~g~~----------~~tlHg~k~qeQRe~aL~~fr~~---t~ 568 (673)
T KOG0333|consen 505 RKKLIEILESN---FDPPIIIFVNTKKGADALAKILEKAGYK----------VTTLHGGKSQEQRENALADFREG---TG 568 (673)
T ss_pred HHHHHHHHHhC---CCCCEEEEEechhhHHHHHHHHhhccce----------EEEeeCCccHHHHHHHHHHHHhc---CC
Confidence 55566655544 3567899999999999999999887642 33444443 35899999999986 68
Q ss_pred eEEEEeeCcccccccccCCC
Q psy1221 653 ALMLSVIGGKLSEGLNFSDD 672 (690)
Q Consensus 653 aiLfaV~gG~~sEGIDf~g~ 672 (690)
.||.|+ .....|||+|+=
T Consensus 569 dIlVaT--DvAgRGIDIpnV 586 (673)
T KOG0333|consen 569 DILVAT--DVAGRGIDIPNV 586 (673)
T ss_pred CEEEEe--cccccCCCCCcc
Confidence 999988 999999999983
No 94
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=93.15 E-value=0.25 Score=40.75 Aligned_cols=53 Identities=15% Similarity=0.292 Sum_probs=42.4
Q ss_pred eEEEcCCCc-hhHHHHHHHhhhcccCCceEEEEeeCcccccccccCCCcceEEEEEcCCCC
Q psy1221 626 VVFREPKKT-SEVDKVLSDYGTSVEKGGALMLSVIGGKLSEGLNFSDDLGRCVVVMCNSNP 685 (690)
Q Consensus 626 ~i~~E~~~~-~~~~~~l~~f~~~~~~~~aiLfaV~gG~~sEGIDf~g~~~r~ViivgLPfp 685 (690)
...+-+... .++++++++|... ...+|+++ ..++||||+++ ++.||..+.|..
T Consensus 10 ~~~i~~~~~~~~r~~~~~~f~~~---~~~vli~t--~~~~~Gid~~~--~~~vi~~~~~~~ 63 (78)
T PF00271_consen 10 VAIIHGDMSQKERQEILKKFNSG---EIRVLIAT--DILGEGIDLPD--ASHVIFYDPPWS 63 (78)
T ss_dssp EEEESTTSHHHHHHHHHHHHHTT---SSSEEEES--CGGTTSSTSTT--ESEEEESSSESS
T ss_pred EEEEECCCCHHHHHHHHHHhhcc---CceEEEee--ccccccccccc--cccccccccCCC
Confidence 444444433 3789999999987 67899988 78999999995 999999998764
No 95
>KOG0347|consensus
Probab=92.49 E-value=0.28 Score=54.68 Aligned_cols=80 Identities=13% Similarity=0.115 Sum_probs=60.9
Q ss_pred cccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCC-chhHHHHHHHhhhcccCCceEEEEeeCccccc
Q psy1221 587 IVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKK-TSEVDKVLSDYGTSVEKGGALMLSVIGGKLSE 665 (690)
Q Consensus 587 ~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~-~~~~~~~l~~f~~~~~~~~aiLfaV~gG~~sE 665 (690)
.-||.++||..|-+-..+++..++..++. ++-+-..+ ..++-+-|++|+++ ..+||+|+ ...+.
T Consensus 461 ryPGrTlVF~NsId~vKRLt~~L~~L~i~----------p~~LHA~M~QKqRLknLEkF~~~---~~~VLiaT--DVAAR 525 (731)
T KOG0347|consen 461 RYPGRTLVFCNSIDCVKRLTVLLNNLDIP----------PLPLHASMIQKQRLKNLEKFKQS---PSGVLIAT--DVAAR 525 (731)
T ss_pred ecCCceEEEechHHHHHHHHHHHhhcCCC----------CchhhHHHHHHHHHHhHHHHhcC---CCeEEEee--hhhhc
Confidence 34899999999999999999999865432 12222221 12566779999997 78999998 99999
Q ss_pred ccccCCCcceEEEEEcCC
Q psy1221 666 GLNFSDDLGRCVVVMCNS 683 (690)
Q Consensus 666 GIDf~g~~~r~ViivgLP 683 (690)
|+|+|| ..+||=.-+|
T Consensus 526 GLDIp~--V~HVIHYqVP 541 (731)
T KOG0347|consen 526 GLDIPG--VQHVIHYQVP 541 (731)
T ss_pred cCCCCC--cceEEEeecC
Confidence 999998 5677766665
No 96
>KOG0328|consensus
Probab=92.48 E-value=1.8 Score=44.67 Aligned_cols=77 Identities=16% Similarity=0.229 Sum_probs=57.3
Q ss_pred CcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCc-hhHHHHHHHhhhcccCCceEEEEeeCcccccccc
Q psy1221 590 KGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKT-SEVDKVLSDYGTSVEKGGALMLSVIGGKLSEGLN 668 (690)
Q Consensus 590 gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~-~~~~~~l~~f~~~~~~~~aiLfaV~gG~~sEGID 668 (690)
--+++|+.+.+-.+...+.+++.++. .....+... .++++++.+|+.. +.-||+++ ..++.|||
T Consensus 267 tQavIFcnTk~kVdwLtekm~~~nft----------VssmHGDm~qkERd~im~dFRsg---~SrvLitT--DVwaRGiD 331 (400)
T KOG0328|consen 267 TQAVIFCNTKRKVDWLTEKMREANFT----------VSSMHGDMEQKERDKIMNDFRSG---KSRVLITT--DVWARGID 331 (400)
T ss_pred heEEEEecccchhhHHHHHHHhhCce----------eeeccCCcchhHHHHHHHHhhcC---CceEEEEe--chhhccCC
Confidence 45789999999999888888865542 112222222 3899999999987 78899988 99999999
Q ss_pred cCCCcceEEEEEcCC
Q psy1221 669 FSDDLGRCVVVMCNS 683 (690)
Q Consensus 669 f~g~~~r~ViivgLP 683 (690)
.+- ...||=.-||
T Consensus 332 v~q--VslviNYDLP 344 (400)
T KOG0328|consen 332 VQQ--VSLVINYDLP 344 (400)
T ss_pred cce--eEEEEecCCC
Confidence 984 6667666666
No 97
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=92.07 E-value=0.8 Score=54.83 Aligned_cols=87 Identities=18% Similarity=0.287 Sum_probs=64.5
Q ss_pred HHHHHhhhcccCcEEEEecc---HHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCchhHHHHHHHhhhcccCCceEE
Q psy1221 579 MTITNLCTIVPKGMVCFFPS---YDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKTSEVDKVLSDYGTSVEKGGALM 655 (690)
Q Consensus 579 ~~I~~l~~~~~gg~lVfF~S---y~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~~~~~~~l~~f~~~~~~~~aiL 655 (690)
+.+.++++..+.|.|||.|. -+..+.++++++..++. -..+.- ...+.++.|.+. +=.+|
T Consensus 325 e~~~elvk~lG~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~---------a~~~~a-----~~~~~le~F~~G---eidvL 387 (1187)
T COG1110 325 EKVVELVKKLGDGGLIFVPIDYGREKAEELAEYLRSHGIN---------AELIHA-----EKEEALEDFEEG---EVDVL 387 (1187)
T ss_pred HHHHHHHHHhCCCeEEEEEcHHhHHHHHHHHHHHHhcCce---------EEEeec-----cchhhhhhhccC---ceeEE
Confidence 33445555666788999999 89999999999987754 112211 125789999886 44555
Q ss_pred EEe--eCcccccccccCCCcceEEEEEcCC
Q psy1221 656 LSV--IGGKLSEGLNFSDDLGRCVVVMCNS 683 (690)
Q Consensus 656 faV--~gG~~sEGIDf~g~~~r~ViivgLP 683 (690)
.|| .-|.+-.|||+| +..|-+|-+|.|
T Consensus 388 VGvAsyYG~lVRGlDLP-~rirYaIF~GvP 416 (1187)
T COG1110 388 VGVASYYGVLVRGLDLP-HRIRYAVFYGVP 416 (1187)
T ss_pred EEecccccceeecCCch-hheeEEEEecCC
Confidence 555 469999999999 578999999999
No 98
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=91.83 E-value=2.6 Score=49.84 Aligned_cols=154 Identities=10% Similarity=0.110 Sum_probs=96.6
Q ss_pred hhHHHHHhhcceEEEeCCCCCch-hhHHHHhhccCCCCCCceEEEEeCCCccCCCeeEEEeecCCCCcceeeeccccCCh
Q psy1221 493 NHFTDIVQDARSIIVAGGTMEPV-SEFKDQLFGSLGVPESRIHHFSCGHVIPKENILPLILCSGPTNRKFDLTFENRTKG 571 (690)
Q Consensus 493 ~~~~~~~~~~~svil~SgTLsP~-~~f~~~l~~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 571 (690)
..++.++...+.+.-|+||...- +.|.... |++ +.. . |...-... .+.|+- -|.+ ..
T Consensus 331 It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY----~l~---vv~--I----Ptnkp~~R--~d~~d~-----i~~t--~~ 388 (745)
T TIGR00963 331 ITYQNFFRLYEKLSGMTGTAKTEEEEFEKIY----NLE---VVV--V----PTNRPVIR--KDLSDL-----VYKT--EE 388 (745)
T ss_pred eeHHHHHhhCchhhccCCCcHHHHHHHHHHh----CCC---EEE--e----CCCCCeee--eeCCCe-----EEcC--HH
Confidence 45566666677788889998432 3343333 443 221 1 11111011 111111 2443 23
Q ss_pred HHHHHHHHHHHHhhhcccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCchhHHHHHHHhhhcccCC
Q psy1221 572 DTLKEIAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKTSEVDKVLSDYGTSVEKG 651 (690)
Q Consensus 572 ~~~~~l~~~I~~l~~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~~~~~~~l~~f~~~~~~~ 651 (690)
+...++.+.|.+.. ..+..+|||+.|-..-+.+.+.+.+.++. ...+-.. ..+++..+..|... .
T Consensus 389 ~k~~ai~~~i~~~~-~~grpvLV~t~si~~se~ls~~L~~~gi~----------~~~Lna~-q~~rEa~ii~~ag~---~ 453 (745)
T TIGR00963 389 EKWKAVVDEIKERH-AKGQPVLVGTTSVEKSELLSNLLKERGIP----------HNVLNAK-NHEREAEIIAQAGR---K 453 (745)
T ss_pred HHHHHHHHHHHHHH-hcCCCEEEEeCcHHHHHHHHHHHHHcCCC----------eEEeeCC-hHHHHHHHHHhcCC---C
Confidence 45677777777765 45778999999999999999999976643 2222222 34667778777665 7
Q ss_pred ceEEEEeeCcccccccccCCCc-----ceEEEEEcCCCC
Q psy1221 652 GALMLSVIGGKLSEGLNFSDDL-----GRCVVVMCNSNP 685 (690)
Q Consensus 652 ~aiLfaV~gG~~sEGIDf~g~~-----~r~ViivgLPfp 685 (690)
+.|+.|+ .-.+.|+|++.+. +-+||.+-+|-.
T Consensus 454 g~VtIAT--nmAgRGtDI~l~~V~~~GGl~VI~t~~p~s 490 (745)
T TIGR00963 454 GAVTIAT--NMAGRGTDIKLEEVKELGGLYVIGTERHES 490 (745)
T ss_pred ceEEEEe--ccccCCcCCCccchhhcCCcEEEecCCCCc
Confidence 8999988 8899999999954 448888777743
No 99
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=90.80 E-value=1.5 Score=51.78 Aligned_cols=89 Identities=12% Similarity=0.213 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhhhcccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCC-CchhHHHHHHHhhhcccCCc
Q psy1221 574 LKEIAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPK-KTSEVDKVLSDYGTSVEKGG 652 (690)
Q Consensus 574 ~~~l~~~I~~l~~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~-~~~~~~~~l~~f~~~~~~~~ 652 (690)
++.+.+.|.+.. ..+..++||+++-...+.+.+.+.+.++. ...+... ...++.+.+++|+.. +-
T Consensus 428 i~~Ll~eI~~~~-~~g~~vLIf~~tk~~ae~L~~~L~~~gi~----------~~~lh~~~~~~eR~~~l~~fr~G---~i 493 (655)
T TIGR00631 428 VDDLLSEIRQRV-ARNERVLVTTLTKKMAEDLTDYLKELGIK----------VRYLHSEIDTLERVEIIRDLRLG---EF 493 (655)
T ss_pred HHHHHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHhhhccc----------eeeeeCCCCHHHHHHHHHHHhcC---Cc
Confidence 444555555443 33567999999999999999999865432 2333232 234788999999874 45
Q ss_pred eEEEEeeCcccccccccCCCcceEEEEE
Q psy1221 653 ALMLSVIGGKLSEGLNFSDDLGRCVVVM 680 (690)
Q Consensus 653 aiLfaV~gG~~sEGIDf~g~~~r~Viiv 680 (690)
.||+|+ |.+++|+|+|+ +++||+.
T Consensus 494 ~VLV~t--~~L~rGfDiP~--v~lVvi~ 517 (655)
T TIGR00631 494 DVLVGI--NLLREGLDLPE--VSLVAIL 517 (655)
T ss_pred eEEEEc--ChhcCCeeeCC--CcEEEEe
Confidence 666666 99999999997 5556654
No 100
>KOG0331|consensus
Probab=90.69 E-value=1.6 Score=49.38 Aligned_cols=96 Identities=15% Similarity=0.190 Sum_probs=74.5
Q ss_pred hHHHHHHHHHHHHhhhcccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCc-hhHHHHHHHhhhccc
Q psy1221 571 GDTLKEIAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKT-SEVDKVLSDYGTSVE 649 (690)
Q Consensus 571 ~~~~~~l~~~I~~l~~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~-~~~~~~l~~f~~~~~ 649 (690)
.+..+.+.+.|..+....+|.++||.-....-+++...++..++ +.+.+-+..+ .+++..|+.|++.
T Consensus 323 ~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~----------~a~~iHGd~sQ~eR~~~L~~FreG-- 390 (519)
T KOG0331|consen 323 TAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGW----------PAVAIHGDKSQSERDWVLKGFREG-- 390 (519)
T ss_pred HHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCc----------ceeeecccccHHHHHHHHHhcccC--
Confidence 35566778888888777788999999999999999888885431 2344444433 4899999999986
Q ss_pred CCceEEEEeeCcccccccccCCCcceEEEEEcCC
Q psy1221 650 KGGALMLSVIGGKLSEGLNFSDDLGRCVVVMCNS 683 (690)
Q Consensus 650 ~~~aiLfaV~gG~~sEGIDf~g~~~r~ViivgLP 683 (690)
+-.||.|+ +..+.|+|++| .+.||-.=.|
T Consensus 391 -~~~vLVAT--dVAaRGLDi~d--V~lVInydfP 419 (519)
T KOG0331|consen 391 -KSPVLVAT--DVAARGLDVPD--VDLVINYDFP 419 (519)
T ss_pred -CcceEEEc--ccccccCCCcc--ccEEEeCCCC
Confidence 67999888 99999999998 7777765555
No 101
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=90.37 E-value=4.2 Score=48.75 Aligned_cols=95 Identities=8% Similarity=0.060 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHhhhcccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCch-hHHHHHHHhhhcccC
Q psy1221 572 DTLKEIAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKTS-EVDKVLSDYGTSVEK 650 (690)
Q Consensus 572 ~~~~~l~~~I~~l~~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~~-~~~~~l~~f~~~~~~ 650 (690)
+-..++.+.|.+.. ..+..+|||+.|-...+.+.+.+.+.++. ...+...... +.......++
T Consensus 412 ~K~~al~~~i~~~~-~~~~pvLIf~~t~~~se~l~~~L~~~gi~----------~~~L~~~~~~~e~~~i~~ag~----- 475 (790)
T PRK09200 412 EKYKAVIEEVKERH-ETGRPVLIGTGSIEQSETFSKLLDEAGIP----------HNLLNAKNAAKEAQIIAEAGQ----- 475 (790)
T ss_pred HHHHHHHHHHHHHH-hcCCCEEEEeCcHHHHHHHHHHHHHCCCC----------EEEecCCccHHHHHHHHHcCC-----
Confidence 45566666666543 24667999999999999999999876543 2333333222 2222332222
Q ss_pred CceEEEEeeCcccccccccC-CCcce-----EEEEEcCCC
Q psy1221 651 GGALMLSVIGGKLSEGLNFS-DDLGR-----CVVVMCNSN 684 (690)
Q Consensus 651 ~~aiLfaV~gG~~sEGIDf~-g~~~r-----~ViivgLPf 684 (690)
.|.|+.|+ .-.+.|+|++ |...+ +||..-+|-
T Consensus 476 ~g~VlIAT--dmAgRG~DI~l~~~V~~~GGL~VI~~d~p~ 513 (790)
T PRK09200 476 KGAVTVAT--NMAGRGTDIKLGEGVHELGGLAVIGTERME 513 (790)
T ss_pred CCeEEEEc--cchhcCcCCCcccccccccCcEEEeccCCC
Confidence 57899888 8999999995 43444 888887774
No 102
>PRK13766 Hef nuclease; Provisional
Probab=90.25 E-value=1.7 Score=52.61 Aligned_cols=93 Identities=12% Similarity=0.121 Sum_probs=67.7
Q ss_pred HHHHHHHHHHhhh-cccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCC--------Cc-hhHHHHHHH
Q psy1221 574 LKEIAMTITNLCT-IVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPK--------KT-SEVDKVLSD 643 (690)
Q Consensus 574 ~~~l~~~I~~l~~-~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~--------~~-~~~~~~l~~ 643 (690)
.+.+.+.|.++.+ ..++.+|||..+.+..+.+++.+...++. ...+.+. .. .++.+++++
T Consensus 349 ~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~----------~~~~~g~~~~~~~~~~~~~~r~~~~~~ 418 (773)
T PRK13766 349 LEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIK----------AVRFVGQASKDGDKGMSQKEQIEILDK 418 (773)
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCc----------eEEEEccccccccCCCCHHHHHHHHHH
Confidence 4556666766654 35668999999999999999999755432 1222221 11 367789999
Q ss_pred hhhcccCCceEEEEeeCcccccccccCCCcceEEEEEcCC
Q psy1221 644 YGTSVEKGGALMLSVIGGKLSEGLNFSDDLGRCVVVMCNS 683 (690)
Q Consensus 644 f~~~~~~~~aiLfaV~gG~~sEGIDf~g~~~r~ViivgLP 683 (690)
|+.. ...+|+|+ ...+||+|++ .++.||....|
T Consensus 419 F~~g---~~~vLvaT--~~~~eGldi~--~~~~VI~yd~~ 451 (773)
T PRK13766 419 FRAG---EFNVLVST--SVAEEGLDIP--SVDLVIFYEPV 451 (773)
T ss_pred HHcC---CCCEEEEC--ChhhcCCCcc--cCCEEEEeCCC
Confidence 9875 57889888 6799999997 58999998865
No 103
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.24 E-value=1.5 Score=51.90 Aligned_cols=80 Identities=5% Similarity=-0.015 Sum_probs=54.5
Q ss_pred hcccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCc-hhHHHHHHHhhhcccCCceEEEEeeCcccc
Q psy1221 586 TIVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKT-SEVDKVLSDYGTSVEKGGALMLSVIGGKLS 664 (690)
Q Consensus 586 ~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~-~~~~~~l~~f~~~~~~~~aiLfaV~gG~~s 664 (690)
+..+..+|||+.+-..++.+.+.+. .-++.+..+ .++.+++++|+..- .-.+|+++ ....
T Consensus 493 e~~g~kiLVF~~~~~~l~~~a~~L~---------------~~~I~G~ts~~ER~~il~~Fr~~~--~i~vLv~S--kVgd 553 (732)
T TIGR00603 493 EQRGDKIIVFSDNVFALKEYAIKLG---------------KPFIYGPTSQQERMQILQNFQHNP--KVNTIFLS--KVGD 553 (732)
T ss_pred hhcCCeEEEEeCCHHHHHHHHHHcC---------------CceEECCCCHHHHHHHHHHHHhCC--CccEEEEe--cccc
Confidence 3445688998877777666655442 123445444 38999999998631 22456655 5678
Q ss_pred cccccCCCcceEEEEEcCCCCC
Q psy1221 665 EGLNFSDDLGRCVVVMCNSNPL 686 (690)
Q Consensus 665 EGIDf~g~~~r~ViivgLPfp~ 686 (690)
||||+|+ +.+||++..|+-+
T Consensus 554 eGIDlP~--a~vvI~~s~~~gS 573 (732)
T TIGR00603 554 TSIDLPE--ANVLIQISSHYGS 573 (732)
T ss_pred cccCCCC--CCEEEEeCCCCCC
Confidence 9999997 7889998888644
No 104
>KOG0348|consensus
Probab=89.08 E-value=2.4 Score=47.44 Aligned_cols=106 Identities=17% Similarity=0.233 Sum_probs=72.8
Q ss_pred HHHHHHHHHHhhhccc-CcEEEEeccHHHHHHHHHHHHhcCch----h----H---HHHHhcCceEEEcCCCch--hHHH
Q psy1221 574 LKEIAMTITNLCTIVP-KGMVCFFPSYDYEAIVYNYMRDNHFI----E----R---IARIAKKKVVFREPKKTS--EVDK 639 (690)
Q Consensus 574 ~~~l~~~I~~l~~~~~-gg~lVfF~Sy~~l~~v~~~~~~~~~~----~----~---~~~~~~~~~i~~E~~~~~--~~~~ 639 (690)
+-.++..|.+.++.-+ -.++|||++-+..+.=|+.+...... + - ...+..+-++|.--+.++ ++..
T Consensus 409 LV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts 488 (708)
T KOG0348|consen 409 LVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTS 488 (708)
T ss_pred HHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHH
Confidence 4568888888887643 47999999999988888877643110 0 0 000111123443333333 6788
Q ss_pred HHHHhhhcccCCceEEEEeeCcccccccccCCCcceEEEEEcCCCCC
Q psy1221 640 VLSDYGTSVEKGGALMLSVIGGKLSEGLNFSDDLGRCVVVMCNSNPL 686 (690)
Q Consensus 640 ~l~~f~~~~~~~~aiLfaV~gG~~sEGIDf~g~~~r~ViivgLPfp~ 686 (690)
.+..|+.+ ..+||||+ ...+.|+|||+ .++||=.--||..
T Consensus 489 ~f~~Fs~~---~~~VLLcT--DVAaRGLDlP~--V~~vVQYd~P~s~ 528 (708)
T KOG0348|consen 489 VFQEFSHS---RRAVLLCT--DVAARGLDLPH--VGLVVQYDPPFST 528 (708)
T ss_pred HHHhhccc---cceEEEeh--hhhhccCCCCC--cCeEEEeCCCCCH
Confidence 99999987 78999998 99999999997 7788877777653
No 105
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=88.90 E-value=2.9 Score=52.33 Aligned_cols=102 Identities=8% Similarity=0.150 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhhh-cccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCchhHHHHHHHhhhcccCCc
Q psy1221 574 LKEIAMTITNLCT-IVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKTSEVDKVLSDYGTSVEKGG 652 (690)
Q Consensus 574 ~~~l~~~I~~l~~-~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~~~~~~~l~~f~~~~~~~~ 652 (690)
.+.+++.|.+.+. ..++.++||+.|-...+.+.+.+++..-. .|..........+-.. ....+.++++|++. ...
T Consensus 682 ~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~-~~~~~~~~~v~~itg~-~~~~~~li~~Fk~~--~~p 757 (1123)
T PRK11448 682 NRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKK-KYGQVEDDAVIKITGS-IDKPDQLIRRFKNE--RLP 757 (1123)
T ss_pred HHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHh-hcCCcCccceEEEeCC-ccchHHHHHHHhCC--CCC
Confidence 3344454444432 24578999999999988888877642100 0000111111222222 34568899999874 134
Q ss_pred eEEEEeeCcccccccccCCCcceEEEEEcCC
Q psy1221 653 ALMLSVIGGKLSEGLNFSDDLGRCVVVMCNS 683 (690)
Q Consensus 653 aiLfaV~gG~~sEGIDf~g~~~r~ViivgLP 683 (690)
.|+++| +-+++|||.|. +.+||+.+-|
T Consensus 758 ~IlVsv--dmL~TG~DvP~--v~~vVf~rpv 784 (1123)
T PRK11448 758 NIVVTV--DLLTTGIDVPS--ICNLVFLRRV 784 (1123)
T ss_pred eEEEEe--cccccCCCccc--ccEEEEecCC
Confidence 688888 99999999995 8888888765
No 106
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=88.85 E-value=8.6 Score=41.05 Aligned_cols=81 Identities=11% Similarity=0.259 Sum_probs=58.4
Q ss_pred HHHHHHHHhhhcccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCchhHHHHHHHhhhcccCCceEE
Q psy1221 576 EIAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKTSEVDKVLSDYGTSVEKGGALM 655 (690)
Q Consensus 576 ~l~~~I~~l~~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~~~~~~~l~~f~~~~~~~~aiL 655 (690)
++-+.|.+.. ....-+|+|||+-..|+++.+.+++ ++...+..++-..+ ..+.+-+++|++. .-.||
T Consensus 293 kl~~~lekq~-~~~~P~liF~p~I~~~eq~a~~lk~--------~~~~~~i~~Vhs~d-~~R~EkV~~fR~G---~~~lL 359 (441)
T COG4098 293 KLKRWLEKQR-KTGRPVLIFFPEIETMEQVAAALKK--------KLPKETIASVHSED-QHRKEKVEAFRDG---KITLL 359 (441)
T ss_pred HHHHHHHHHH-hcCCcEEEEecchHHHHHHHHHHHh--------hCCccceeeeeccC-ccHHHHHHHHHcC---ceEEE
Confidence 3444444432 3456799999999999999999973 33444545554443 3567889999986 67889
Q ss_pred EEeeCcccccccccCC
Q psy1221 656 LSVIGGKLSEGLNFSD 671 (690)
Q Consensus 656 faV~gG~~sEGIDf~g 671 (690)
+++ --+-.|+-||+
T Consensus 360 iTT--TILERGVTfp~ 373 (441)
T COG4098 360 ITT--TILERGVTFPN 373 (441)
T ss_pred EEe--ehhhccccccc
Confidence 888 77999999986
No 107
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=88.71 E-value=2.9 Score=49.41 Aligned_cols=92 Identities=12% Similarity=0.175 Sum_probs=63.9
Q ss_pred HHHHHHHHHHhhhcccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcC-CCchhHHHHHHHhhhcccCCc
Q psy1221 574 LKEIAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREP-KKTSEVDKVLSDYGTSVEKGG 652 (690)
Q Consensus 574 ~~~l~~~I~~l~~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~-~~~~~~~~~l~~f~~~~~~~~ 652 (690)
+..+.+.|.+.. .....++||+.+....+.+.+.+...++. ...+.. ....++...+++|+.. +-
T Consensus 432 ~~~L~~~L~~~~-~~g~~viIf~~t~~~ae~L~~~L~~~gi~----------~~~~h~~~~~~~R~~~l~~f~~g---~i 497 (652)
T PRK05298 432 VDDLLSEIRKRV-AKGERVLVTTLTKRMAEDLTDYLKELGIK----------VRYLHSDIDTLERVEIIRDLRLG---EF 497 (652)
T ss_pred HHHHHHHHHHHH-hCCCEEEEEeCCHHHHHHHHHHHhhccee----------EEEEECCCCHHHHHHHHHHHHcC---Cc
Confidence 344555555543 23456899999999999999999865432 233323 3334788999999864 44
Q ss_pred eEEEEeeCcccccccccCCCcceEEEEEcCC
Q psy1221 653 ALMLSVIGGKLSEGLNFSDDLGRCVVVMCNS 683 (690)
Q Consensus 653 aiLfaV~gG~~sEGIDf~g~~~r~ViivgLP 683 (690)
.|+.|+ |.+++|+|+++ .+.||+...+
T Consensus 498 ~vlV~t--~~L~rGfdlp~--v~lVii~d~e 524 (652)
T PRK05298 498 DVLVGI--NLLREGLDIPE--VSLVAILDAD 524 (652)
T ss_pred eEEEEe--CHHhCCccccC--CcEEEEeCCc
Confidence 666666 99999999997 4677777654
No 108
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=88.67 E-value=2.2 Score=52.17 Aligned_cols=84 Identities=17% Similarity=0.169 Sum_probs=61.3
Q ss_pred cCcEEEEeccHHHHHHHHHHHHh-cCchhHHHHHhcCceEEEcCCCchhHHHHHHHhhhcccCCceEEEEeeCccccccc
Q psy1221 589 PKGMVCFFPSYDYEAIVYNYMRD-NHFIERIARIAKKKVVFREPKKTSEVDKVLSDYGTSVEKGGALMLSVIGGKLSEGL 667 (690)
Q Consensus 589 ~gg~lVfF~Sy~~l~~v~~~~~~-~~~~~~~~~~~~~~~i~~E~~~~~~~~~~l~~f~~~~~~~~aiLfaV~gG~~sEGI 667 (690)
+..++||+.+......+.+.++. .++. ...|-......++++.+++|+..- .+..||+|+ ...+||+
T Consensus 493 ~~KvLVF~~~~~t~~~L~~~L~~~~Gi~---------~~~ihG~~s~~eR~~~~~~F~~~~-~~~~VLIsT--dvgseGl 560 (956)
T PRK04914 493 SEKVLVICAKAATALQLEQALREREGIR---------AAVFHEGMSIIERDRAAAYFADEE-DGAQVLLCS--EIGSEGR 560 (956)
T ss_pred CCeEEEEeCcHHHHHHHHHHHhhccCee---------EEEEECCCCHHHHHHHHHHHhcCC-CCccEEEec--hhhccCC
Confidence 67899999999999999999953 2321 223444333348999999998741 024577666 8899999
Q ss_pred ccCCCcceEEEEEcCCCCC
Q psy1221 668 NFSDDLGRCVVVMCNSNPL 686 (690)
Q Consensus 668 Df~g~~~r~ViivgLPfp~ 686 (690)
||+. ++.||..-+|..+
T Consensus 561 Nlq~--a~~VInfDlP~nP 577 (956)
T PRK04914 561 NFQF--ASHLVLFDLPFNP 577 (956)
T ss_pred Cccc--ccEEEEecCCCCH
Confidence 9975 6789999999654
No 109
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=88.23 E-value=5.9 Score=48.15 Aligned_cols=99 Identities=10% Similarity=0.137 Sum_probs=70.7
Q ss_pred hHHHHHHHHHHHHhhhcccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCchhHHHHHHHhhhcccC
Q psy1221 571 GDTLKEIAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKTSEVDKVLSDYGTSVEK 650 (690)
Q Consensus 571 ~~~~~~l~~~I~~l~~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~~~~~~~l~~f~~~~~~ 650 (690)
.+-+.++.+.|.+.. ..+..+|||+.|-...+.+...+++.++. ..++- . ...+++..+..|...
T Consensus 581 ~eK~~Ali~~I~~~~-~~grpVLIft~Sve~sE~Ls~~L~~~gI~---------h~vLn-a-kq~~REa~Iia~AG~--- 645 (1025)
T PRK12900 581 REKYNAIVLKVEELQ-KKGQPVLVGTASVEVSETLSRMLRAKRIA---------HNVLN-A-KQHDREAEIVAEAGQ--- 645 (1025)
T ss_pred HHHHHHHHHHHHHHh-hCCCCEEEEeCcHHHHHHHHHHHHHcCCC---------ceeec-C-CHHHhHHHHHHhcCC---
Confidence 356677777776654 35678999999999999999999876653 12221 1 234667788888765
Q ss_pred CceEEEEeeCcccccccccCC-CcceE---EEEEcCCCCC
Q psy1221 651 GGALMLSVIGGKLSEGLNFSD-DLGRC---VVVMCNSNPL 686 (690)
Q Consensus 651 ~~aiLfaV~gG~~sEGIDf~g-~~~r~---ViivgLPfp~ 686 (690)
.++|++|+ .-.+.|+|++- +..+. +.++|.+.|.
T Consensus 646 ~g~VtIAT--NMAGRGtDIkl~~~V~~vGGL~VIgterhe 683 (1025)
T PRK12900 646 KGAVTIAT--NMAGRGTDIKLGEGVRELGGLFILGSERHE 683 (1025)
T ss_pred CCeEEEec--cCcCCCCCcCCccchhhhCCceeeCCCCCc
Confidence 78999998 88999999983 33333 3777777654
No 110
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=87.81 E-value=5.6 Score=47.95 Aligned_cols=84 Identities=10% Similarity=0.198 Sum_probs=58.6
Q ss_pred ceEEEeCCCCCchhhHHHHhhccCCCCCCceEEEEeCCCccCCCeeEEEeecCCCCcceeeec-cccCChH-HHHHHHHH
Q psy1221 503 RSIIVAGGTMEPVSEFKDQLFGSLGVPESRIHHFSCGHVIPKENILPLILCSGPTNRKFDLTF-ENRTKGD-TLKEIAMT 580 (690)
Q Consensus 503 ~svil~SgTLsP~~~f~~~l~~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~-~~r~~~~-~~~~l~~~ 580 (690)
=.+|.|||||.+ +.|+.+|.. .+++.++ +.- -+++..| +....+. ..+.+...
T Consensus 196 LKiIimSATld~-~rfs~~f~~------apvi~i~-GR~-----------------fPVei~Y~~~~~~d~~l~~ai~~~ 250 (845)
T COG1643 196 LKLIIMSATLDA-ERFSAYFGN------APVIEIE-GRT-----------------YPVEIRYLPEAEADYILLDAIVAA 250 (845)
T ss_pred ceEEEEecccCH-HHHHHHcCC------CCEEEec-CCc-----------------cceEEEecCCCCcchhHHHHHHHH
Confidence 369999999977 778777621 1222211 111 2344455 2222233 67888888
Q ss_pred HHHhhhcccCcEEEEeccHHHHHHHHHHHHh
Q psy1221 581 ITNLCTIVPKGMVCFFPSYDYEAIVYNYMRD 611 (690)
Q Consensus 581 I~~l~~~~~gg~lVfF~Sy~~l~~v~~~~~~ 611 (690)
+......-+|.+|||+|-=+..+++.+.+.+
T Consensus 251 v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~ 281 (845)
T COG1643 251 VDIHLREGSGSILVFLPGQREIERTAEWLEK 281 (845)
T ss_pred HHHhccCCCCCEEEECCcHHHHHHHHHHHHh
Confidence 8888888899999999999999999999985
No 111
>PRK09694 helicase Cas3; Provisional
Probab=87.39 E-value=12 Score=45.71 Aligned_cols=74 Identities=9% Similarity=0.249 Sum_probs=49.8
Q ss_pred ccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCch-hH----HHHHHHhhhcccC-CceEEEEeeCc
Q psy1221 588 VPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKTS-EV----DKVLSDYGTSVEK-GGALMLSVIGG 661 (690)
Q Consensus 588 ~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~~-~~----~~~l~~f~~~~~~-~~aiLfaV~gG 661 (690)
.++.+|||+++-+..+.+|+.+++... ...+..++-.+... ++ +++++.|.+..+. .+.||+|+ -
T Consensus 559 ~g~~vLVf~NTV~~Aq~ly~~L~~~~~-------~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaT--Q 629 (878)
T PRK09694 559 AGAQVCLICNLVDDAQKLYQRLKELNN-------TQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVAT--Q 629 (878)
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhhCC-------CCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEEC--c
Confidence 345689999999999999999985321 01234555555332 44 4678888443211 25788887 7
Q ss_pred ccccccccC
Q psy1221 662 KLSEGLNFS 670 (690)
Q Consensus 662 ~~sEGIDf~ 670 (690)
.+..|||+.
T Consensus 630 ViE~GLDId 638 (878)
T PRK09694 630 VVEQSLDLD 638 (878)
T ss_pred chhheeecC
Confidence 799999995
No 112
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=87.36 E-value=0.83 Score=52.53 Aligned_cols=79 Identities=11% Similarity=0.064 Sum_probs=59.2
Q ss_pred eeeeeHHHHHHHHHhhhhccCCcccCCceeEEEEeCCccchHHHHhHhhhhhcCC-cccCCcccccHHHHHhhhhhcCCC
Q psy1221 139 REDIGVERLFSIIENRNAEQGVKVKTTSTQVYVASAQKNLVEPRMQLCHELWGGE-KTQEKPKLSGLQSFLKGVQENNPN 217 (690)
Q Consensus 139 g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~l~~~L~~~~-i~~~~~~~~~Lk~~lk~~~kl~~~ 217 (690)
|+..|+|||+.++.+... .....+..+.+|+|++.++.....++++++.||+.+ .++.+....++++.++.+++.+..
T Consensus 412 ~~~GgiERli~iL~e~~~-G~~P~wlaP~qV~Iipi~e~~~~~A~~Ia~~LR~~GirVelD~~~~~lgkkir~A~k~gip 490 (545)
T PRK14799 412 AIYGSIDRFVAILLEHFK-GKLPTWLSSVQVRVLPITDEVNEYAEKVLNDMRKRRIRAEIDYAGETLSKRIKNAYDQGVP 490 (545)
T ss_pred cCCCCHHHHHHHHHHHcC-CCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHHcCCC
Confidence 577799999998854211 011123457899999999888889999999999854 455566677999999999988765
Q ss_pred C
Q psy1221 218 L 218 (690)
Q Consensus 218 ~ 218 (690)
.
T Consensus 491 ~ 491 (545)
T PRK14799 491 Y 491 (545)
T ss_pred E
Confidence 3
No 113
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=86.91 E-value=10 Score=42.29 Aligned_cols=85 Identities=16% Similarity=0.181 Sum_probs=67.0
Q ss_pred hcccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCchhHHHHHHHhhhcccCCceEEEEeeCccccc
Q psy1221 586 TIVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKTSEVDKVLSDYGTSVEKGGALMLSVIGGKLSE 665 (690)
Q Consensus 586 ~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~~~~~~~l~~f~~~~~~~~aiLfaV~gG~~sE 665 (690)
....+|+|||.|||-..=++.+++++..+. -..+-|-...++.......|... +..+|+-+-|-.|-.
T Consensus 297 ~~~~~~~LIfIPSYfDfVRlRN~lk~~~~s---------F~~i~EYts~~~isRAR~~F~~G---~~~iLL~TER~HFfr 364 (442)
T PF06862_consen 297 DSKMSGTLIFIPSYFDFVRLRNYLKKENIS---------FVQISEYTSNSDISRARSQFFHG---RKPILLYTERFHFFR 364 (442)
T ss_pred ccCCCcEEEEecchhhhHHHHHHHHhcCCe---------EEEecccCCHHHHHHHHHHHHcC---CceEEEEEhHHhhhh
Confidence 456799999999999999999999965542 23445655556778888889887 689999887777777
Q ss_pred ccccCCCcceEEEEEcCCC
Q psy1221 666 GLNFSDDLGRCVVVMCNSN 684 (690)
Q Consensus 666 GIDf~g~~~r~ViivgLPf 684 (690)
=-.+.| .+.||..|+|=
T Consensus 365 Ry~irG--i~~viFY~~P~ 381 (442)
T PF06862_consen 365 RYRIRG--IRHVIFYGPPE 381 (442)
T ss_pred hceecC--CcEEEEECCCC
Confidence 677776 89999999994
No 114
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=86.75 E-value=4.6 Score=45.39 Aligned_cols=75 Identities=15% Similarity=0.250 Sum_probs=55.1
Q ss_pred cCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCC-chhHHHHHHHhhhcccCCceEEEEeeCccccccc
Q psy1221 589 PKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKK-TSEVDKVLSDYGTSVEKGGALMLSVIGGKLSEGL 667 (690)
Q Consensus 589 ~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~-~~~~~~~l~~f~~~~~~~~aiLfaV~gG~~sEGI 667 (690)
..++++|..+-...+.+...+...+. .-++.... ..+++.++++|+.. +--+|+++ .-+.|||
T Consensus 283 ~~~~lif~~~~~~a~~i~~~~~~~~~-----------~~~it~~t~~~eR~~il~~fr~g---~~~~lv~~--~vl~EGv 346 (442)
T COG1061 283 GDKTLIFASDVEHAYEIAKLFLAPGI-----------VEAITGETPKEEREAILERFRTG---GIKVLVTV--KVLDEGV 346 (442)
T ss_pred CCcEEEEeccHHHHHHHHHHhcCCCc-----------eEEEECCCCHHHHHHHHHHHHcC---CCCEEEEe--eecccee
Confidence 45899999999999888887775421 11222332 34899999999985 35677777 7899999
Q ss_pred ccCCCcceEEEEEc
Q psy1221 668 NFSDDLGRCVVVMC 681 (690)
Q Consensus 668 Df~g~~~r~Viivg 681 (690)
|+|+ +.++|+++
T Consensus 347 DiP~--~~~~i~~~ 358 (442)
T COG1061 347 DIPD--ADVLIILR 358 (442)
T ss_pred cCCC--CcEEEEeC
Confidence 9998 66677765
No 115
>KOG0341|consensus
Probab=86.46 E-value=2.1 Score=46.05 Aligned_cols=82 Identities=12% Similarity=0.135 Sum_probs=63.8
Q ss_pred HHHhhhcccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEc-CCCchhHHHHHHHhhhcccCCceEEEEee
Q psy1221 581 ITNLCTIVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFRE-PKKTSEVDKVLSDYGTSVEKGGALMLSVI 659 (690)
Q Consensus 581 I~~l~~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E-~~~~~~~~~~l~~f~~~~~~~~aiLfaV~ 659 (690)
+.+..+.++.-+|+|.-.....+.+++++--.+.. .+-+- +++.++++..++.|+.. ++-||.|+
T Consensus 413 lLeCLQKT~PpVLIFaEkK~DVD~IhEYLLlKGVE----------avaIHGGKDQedR~~ai~afr~g---kKDVLVAT- 478 (610)
T KOG0341|consen 413 LLECLQKTSPPVLIFAEKKADVDDIHEYLLLKGVE----------AVAIHGGKDQEDRHYAIEAFRAG---KKDVLVAT- 478 (610)
T ss_pred HHHHhccCCCceEEEeccccChHHHHHHHHHccce----------eEEeecCcchhHHHHHHHHHhcC---CCceEEEe-
Confidence 45666778889999999999999999998854432 33333 34445899999999987 78999988
Q ss_pred CcccccccccCCCcceEEEE
Q psy1221 660 GGKLSEGLNFSDDLGRCVVV 679 (690)
Q Consensus 660 gG~~sEGIDf~g~~~r~Vii 679 (690)
...|.|+|||| ...||=
T Consensus 479 -DVASKGLDFp~--iqHVIN 495 (610)
T KOG0341|consen 479 -DVASKGLDFPD--IQHVIN 495 (610)
T ss_pred -cchhccCCCcc--chhhcc
Confidence 99999999998 344443
No 116
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=86.33 E-value=12 Score=44.97 Aligned_cols=98 Identities=6% Similarity=0.044 Sum_probs=65.9
Q ss_pred hHHHHHHHHHHHHhhhcccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCchhHHHHHHHhhhcccC
Q psy1221 571 GDTLKEIAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKTSEVDKVLSDYGTSVEK 650 (690)
Q Consensus 571 ~~~~~~l~~~I~~l~~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~~~~~~~l~~f~~~~~~ 650 (690)
.+...++.+.|.+.. ..+..+|||+.|-..-+.+.+.+.+.++. ...+..+. .+.+..+-.+.- .
T Consensus 423 ~~K~~al~~~i~~~~-~~g~pvLI~t~si~~se~ls~~L~~~gi~----------~~~Lna~~-~~~Ea~ii~~ag---~ 487 (796)
T PRK12906 423 DSKFNAVVKEIKERH-AKGQPVLVGTVAIESSERLSHLLDEAGIP----------HAVLNAKN-HAKEAEIIMNAG---Q 487 (796)
T ss_pred HHHHHHHHHHHHHHH-hCCCCEEEEeCcHHHHHHHHHHHHHCCCC----------eeEecCCc-HHHHHHHHHhcC---C
Confidence 355667777776654 46778999999999999999999976653 12222222 223333322222 1
Q ss_pred CceEEEEeeCcccccccccC-CCcce-----EEEEEcCCCC
Q psy1221 651 GGALMLSVIGGKLSEGLNFS-DDLGR-----CVVVMCNSNP 685 (690)
Q Consensus 651 ~~aiLfaV~gG~~sEGIDf~-g~~~r-----~ViivgLPfp 685 (690)
.|+|++|+ .-...|+|++ |+..+ +||.+-+|-.
T Consensus 488 ~g~VtIAT--nmAGRGtDI~l~~~V~~~GGLhVI~te~pes 526 (796)
T PRK12906 488 RGAVTIAT--NMAGRGTDIKLGPGVKELGGLAVIGTERHES 526 (796)
T ss_pred CceEEEEe--ccccCCCCCCCCcchhhhCCcEEEeeecCCc
Confidence 57899988 8899999996 45555 8888877743
No 117
>KOG0339|consensus
Probab=85.74 E-value=8.5 Score=43.02 Aligned_cols=90 Identities=13% Similarity=0.184 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHHHhhhcccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCC-CchhHHHHHHHhhhccc
Q psy1221 571 GDTLKEIAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPK-KTSEVDKVLSDYGTSVE 649 (690)
Q Consensus 571 ~~~~~~l~~~I~~l~~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~-~~~~~~~~l~~f~~~~~ 649 (690)
+.-+..+.+.|.+.+ ..|.+|+|.|=....+.+...|+-.++. ....-.. +..++.+.|.+|++.
T Consensus 452 ~~Kl~wl~~~L~~f~--S~gkvlifVTKk~~~e~i~a~Lklk~~~----------v~llhgdkdqa~rn~~ls~fKkk-- 517 (731)
T KOG0339|consen 452 EKKLNWLLRHLVEFS--SEGKVLIFVTKKADAEEIAANLKLKGFN----------VSLLHGDKDQAERNEVLSKFKKK-- 517 (731)
T ss_pred HHHHHHHHHHhhhhc--cCCcEEEEEeccCCHHHHHHHhccccce----------eeeecCchhhHHHHHHHHHHhhc--
Confidence 344555555554442 4688999999999999998888754332 2233222 234889999999986
Q ss_pred CCceEEEEeeCcccccccccCCCcceEEEE
Q psy1221 650 KGGALMLSVIGGKLSEGLNFSDDLGRCVVV 679 (690)
Q Consensus 650 ~~~aiLfaV~gG~~sEGIDf~g~~~r~Vii 679 (690)
..-||.++ ..-..|.|++ .++.||-
T Consensus 518 -~~~Vlvat--DvaargldI~--~ikTVvn 542 (731)
T KOG0339|consen 518 -RKPVLVAT--DVAARGLDIP--SIKTVVN 542 (731)
T ss_pred -CCceEEEe--eHhhcCCCcc--ccceeec
Confidence 57899888 8899999999 5777764
No 118
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=84.19 E-value=16 Score=43.96 Aligned_cols=85 Identities=8% Similarity=0.083 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHHHhhhcccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCchhHHHHHHHhhhcccC
Q psy1221 571 GDTLKEIAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKTSEVDKVLSDYGTSVEK 650 (690)
Q Consensus 571 ~~~~~~l~~~I~~l~~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~~~~~~~l~~f~~~~~~ 650 (690)
.+-..++.+.|.+... .+..+|||+.|-..-+.+.+.+.+.++. ...+-. ...+++..+..|...
T Consensus 413 ~~K~~aI~~~I~~~~~-~grpVLIft~Si~~se~Ls~~L~~~gi~----------~~vLna-kq~eREa~Iia~Ag~--- 477 (830)
T PRK12904 413 KEKFDAVVEDIKERHK-KGQPVLVGTVSIEKSELLSKLLKKAGIP----------HNVLNA-KNHEREAEIIAQAGR--- 477 (830)
T ss_pred HHHHHHHHHHHHHHHh-cCCCEEEEeCcHHHHHHHHHHHHHCCCc----------eEeccC-chHHHHHHHHHhcCC---
Confidence 3556778777766553 4567999999999999999999976643 112222 234677788888765
Q ss_pred CceEEEEeeCcccccccccCCC
Q psy1221 651 GGALMLSVIGGKLSEGLNFSDD 672 (690)
Q Consensus 651 ~~aiLfaV~gG~~sEGIDf~g~ 672 (690)
.++|+.|+ .-.+.|+|++=.
T Consensus 478 ~g~VtIAT--NmAGRGtDI~Lg 497 (830)
T PRK12904 478 PGAVTIAT--NMAGRGTDIKLG 497 (830)
T ss_pred CceEEEec--ccccCCcCccCC
Confidence 78999998 889999999654
No 119
>KOG0327|consensus
Probab=84.01 E-value=9.3 Score=41.29 Aligned_cols=87 Identities=15% Similarity=0.197 Sum_probs=62.0
Q ss_pred HHHHHhhhcccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCC-chhHHHHHHHhhhcccCCceEEEE
Q psy1221 579 MTITNLCTIVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKK-TSEVDKVLSDYGTSVEKGGALMLS 657 (690)
Q Consensus 579 ~~I~~l~~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~-~~~~~~~l~~f~~~~~~~~aiLfa 657 (690)
..+..+.. .-.+.++|+.+.+.+..+.+.+...+. +...+-... ..+++.++.+|+.. ...+|..
T Consensus 254 ~~l~dl~~-~~~q~~if~nt~r~v~~l~~~L~~~~~----------~~s~~~~d~~q~~R~~~~~ef~~g---ssrvlIt 319 (397)
T KOG0327|consen 254 DTLCDLYR-RVTQAVIFCNTRRKVDNLTDKLRAHGF----------TVSAIHGDMEQNERDTLMREFRSG---SSRVLIT 319 (397)
T ss_pred cHHHHHHH-hhhcceEEecchhhHHHHHHHHhhCCc----------eEEEeecccchhhhhHHHHHhhcC---CceEEee
Confidence 34444444 446779999999999999998864432 122222221 23788999999986 6789988
Q ss_pred eeCcccccccccCCCcceEEEEEcCC
Q psy1221 658 VIGGKLSEGLNFSDDLGRCVVVMCNS 683 (690)
Q Consensus 658 V~gG~~sEGIDf~g~~~r~ViivgLP 683 (690)
. +.++.|||+.. +..||..=+|
T Consensus 320 t--dl~argidv~~--~slvinydlP 341 (397)
T KOG0327|consen 320 T--DLLARGIDVQQ--VSLVVNYDLP 341 (397)
T ss_pred c--cccccccchhh--cceeeeeccc
Confidence 8 88999999975 6677777666
No 120
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=83.87 E-value=1.9 Score=48.46 Aligned_cols=79 Identities=13% Similarity=0.026 Sum_probs=56.0
Q ss_pred eeeeHHHHHHHHHhhhhc-cC--CcccCCceeEEEEeC---CccchHHHHhHhhhhhcCCc-ccCCcccccHHHHHhhhh
Q psy1221 140 EDIGVERLFSIIENRNAE-QG--VKVKTTSTQVYVASA---QKNLVEPRMQLCHELWGGEK-TQEKPKLSGLQSFLKGVQ 212 (690)
Q Consensus 140 ~~~~~~~l~~~~~~~~~~-~~--~~~~~~~~~v~v~~~---~~~~~~~~~~l~~~L~~~~i-~~~~~~~~~Lk~~lk~~~ 212 (690)
|++|++|++.++.+.... .+ ...+..+.+|+|++. ++...+.+.++++.||+.++ +..+....++...++.++
T Consensus 316 ~GiGieRli~~l~e~~~d~~g~~~P~~iaP~qV~Iipi~~~~~~~~~~a~~i~~~L~~~Gi~v~~D~~~~~lg~ki~~a~ 395 (439)
T PRK12325 316 YGIGVSRLVAAIIEASHDDKGIIWPESVAPFKVGIINLKQGDEACDAACEKLYAALSAAGIDVLYDDTDERPGAKFATMD 395 (439)
T ss_pred eECCHHHHHHHHHHHhCccCCCcCCCCcCCeEEEEEecCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHhHHHHHHH
Confidence 889999999998865211 11 112335689999998 45566788999999998544 444444578899999888
Q ss_pred hcCCCC
Q psy1221 213 ENNPNL 218 (690)
Q Consensus 213 kl~~~~ 218 (690)
+.+...
T Consensus 396 ~~giP~ 401 (439)
T PRK12325 396 LIGLPW 401 (439)
T ss_pred HcCCCE
Confidence 877544
No 121
>COG1204 Superfamily II helicase [General function prediction only]
Probab=83.81 E-value=9.9 Score=45.69 Aligned_cols=95 Identities=16% Similarity=0.083 Sum_probs=49.9
Q ss_pred ceEEEeCCCCCchhhHHHHhhccCCCCCCceEEEEeCCCccCCCeeEEEeecCCCCcceeeeccccCChHHHHHHHHHHH
Q psy1221 503 RSIIVAGGTMEPVSEFKDQLFGSLGVPESRIHHFSCGHVIPKENILPLILCSGPTNRKFDLTFENRTKGDTLKEIAMTIT 582 (690)
Q Consensus 503 ~svil~SgTLsP~~~f~~~l~~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~I~ 582 (690)
-.+|-.|||+.....+++.+..... .........-++.+..+..... ++ ..+..+.........+.
T Consensus 181 ~rivgLSATlpN~~evA~wL~a~~~--~~~~rp~~l~~~v~~~~~~~~~--~~----------~~k~~~~~~~~~~~~~v 246 (766)
T COG1204 181 IRIVGLSATLPNAEEVADWLNAKLV--ESDWRPVPLRRGVPYVGAFLGA--DG----------KKKTWPLLIDNLALELV 246 (766)
T ss_pred eEEEEEeeecCCHHHHHHHhCCccc--ccCCCCcccccCCccceEEEEe--cC----------ccccccccchHHHHHHH
Confidence 4799999999999999998844321 1111112222223333222111 11 11100111111111122
Q ss_pred HhhhcccCcEEEEeccHHHHHHHHHHHHh
Q psy1221 583 NLCTIVPKGMVCFFPSYDYEAIVYNYMRD 611 (690)
Q Consensus 583 ~l~~~~~gg~lVfF~Sy~~l~~v~~~~~~ 611 (690)
.-+-...|.+|||.+|...-..+.+.+..
T Consensus 247 ~~~~~~~~qvLvFv~sR~~a~~~A~~l~~ 275 (766)
T COG1204 247 LESLAEGGQVLVFVHSRKEAEKTAKKLRI 275 (766)
T ss_pred HHHHhcCCeEEEEEecCchHHHHHHHHHH
Confidence 22224567899999999999888888873
No 122
>KOG0330|consensus
Probab=83.07 E-value=20 Score=39.02 Aligned_cols=85 Identities=13% Similarity=0.146 Sum_probs=53.1
Q ss_pred HhhhcccCcEE-EEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCch-hHHHHHHHhhhcccCCceEEEEeeC
Q psy1221 583 NLCTIVPKGMV-CFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKTS-EVDKVLSDYGTSVEKGGALMLSVIG 660 (690)
Q Consensus 583 ~l~~~~~gg~l-VfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~~-~~~~~l~~f~~~~~~~~aiLfaV~g 660 (690)
.+.+...|+.+ ||..+-..-+.+.-.++..++. .+=+.++++. .+-..+++|+.. ...||.|+
T Consensus 293 ~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~----------a~~LhGqmsq~~Rlg~l~~Fk~~---~r~iLv~T-- 357 (476)
T KOG0330|consen 293 YLLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQ----------AIPLHGQMSQSKRLGALNKFKAG---ARSILVCT-- 357 (476)
T ss_pred HHHHhhcCCcEEEEEeccchHHHHHHHHHhcCcc----------eecccchhhHHHHHHHHHHHhcc---CCcEEEec--
Confidence 34444455655 4544444445554455544432 2333444332 566789999987 68999988
Q ss_pred cccccccccCCCcceEEEEEcCCC
Q psy1221 661 GKLSEGLNFSDDLGRCVVVMCNSN 684 (690)
Q Consensus 661 G~~sEGIDf~g~~~r~ViivgLPf 684 (690)
..-|.|+|.|. .+.||=.-+|-
T Consensus 358 DVaSRGLDip~--Vd~VVNyDiP~ 379 (476)
T KOG0330|consen 358 DVASRGLDIPH--VDVVVNYDIPT 379 (476)
T ss_pred chhcccCCCCC--ceEEEecCCCC
Confidence 99999999996 56666666654
No 123
>KOG0344|consensus
Probab=82.76 E-value=7 Score=44.36 Aligned_cols=81 Identities=11% Similarity=0.172 Sum_probs=59.0
Q ss_pred ccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCchhHHHHHHHhhhcccCCceEEEEeeCccccccc
Q psy1221 588 VPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKTSEVDKVLSDYGTSVEKGGALMLSVIGGKLSEGL 667 (690)
Q Consensus 588 ~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~~~~~~~l~~f~~~~~~~~aiLfaV~gG~~sEGI 667 (690)
.+--+|||..||+.-.++++.+.. + +.|. ..+..-.+...++++.+++|+.. +=-+|+|+ +.++.||
T Consensus 386 ~~PP~lIfVQs~eRak~L~~~L~~---~---~~i~--v~vIh~e~~~~qrde~~~~FR~g---~IwvLicT--dll~RGi 452 (593)
T KOG0344|consen 386 FKPPVLIFVQSKERAKQLFEELEI---Y---DNIN--VDVIHGERSQKQRDETMERFRIG---KIWVLICT--DLLARGI 452 (593)
T ss_pred CCCCeEEEEecHHHHHHHHHHhhh---c---cCcc--eeeEecccchhHHHHHHHHHhcc---CeeEEEeh--hhhhccc
Confidence 677899999999999999988841 1 2232 22333333345889999999985 45677777 9999999
Q ss_pred ccCCCcceEEEEEcCC
Q psy1221 668 NFSDDLGRCVVVMCNS 683 (690)
Q Consensus 668 Df~g~~~r~ViivgLP 683 (690)
||.| ..+||..=+|
T Consensus 453 Df~g--vn~VInyD~p 466 (593)
T KOG0344|consen 453 DFKG--VNLVINYDFP 466 (593)
T ss_pred cccC--cceEEecCCC
Confidence 9998 5677774444
No 124
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=81.26 E-value=12 Score=45.64 Aligned_cols=170 Identities=16% Similarity=0.147 Sum_probs=92.2
Q ss_pred chhhHHHHHhhcc------eEEEeCCCCCchhhHHHHhhccCCCCCCceEEEEeCCCccCCCeeEEEeecCCCCcceeee
Q psy1221 491 PANHFTDIVQDAR------SIIVAGGTMEPVSEFKDQLFGSLGVPESRIHHFSCGHVIPKENILPLILCSGPTNRKFDLT 564 (690)
Q Consensus 491 p~~~~~~~~~~~~------svil~SgTLsP~~~f~~~l~~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 564 (690)
.+..++.+.+.++ .+|++|||+....+|...+.. .+.. ........+..- ..++....+.... .
T Consensus 215 vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~---~~f~---~~v~~~g~~~~~-~~~~~~~p~~~~~---~ 284 (851)
T COG1205 215 VALLLRRLLRRLRRYGSPLQIICTSATLANPGEFAEELFG---RDFE---VPVDEDGSPRGL-RYFVRREPPIREL---A 284 (851)
T ss_pred HHHHHHHHHHHHhccCCCceEEEEeccccChHHHHHHhcC---Ccce---eeccCCCCCCCc-eEEEEeCCcchhh---h
Confidence 4556666665444 799999999877777666633 2111 101222233222 2222222211100 0
Q ss_pred ccccCChHHHHHHHHHHHHhhhcccCcEEEEeccHHHHHHHHHHHHhcCchhHHH-HHhcCceEEEcCCC--chhHHHHH
Q psy1221 565 FENRTKGDTLKEIAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIA-RIAKKKVVFREPKK--TSEVDKVL 641 (690)
Q Consensus 565 ~~~r~~~~~~~~l~~~I~~l~~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~-~~~~~~~i~~E~~~--~~~~~~~l 641 (690)
..-|. +.....+..+..++ ...--+||||-|....+.++...+..-.. .. ++. ..+..-... ..++.++.
T Consensus 285 ~~~r~--s~~~~~~~~~~~~~-~~~~~tL~F~~sr~~~e~~~~~~~~~~~~--~~~~l~--~~v~~~~~~~~~~er~~ie 357 (851)
T COG1205 285 ESIRR--SALAELATLAALLV-RNGIQTLVFFRSRKQVELLYLSPRRRLVR--EGGKLL--DAVSTYRAGLHREERRRIE 357 (851)
T ss_pred hhccc--chHHHHHHHHHHHH-HcCceEEEEEehhhhhhhhhhchhHHHhh--cchhhh--hheeeccccCCHHHHHHHH
Confidence 00111 23333444443333 34456899999999999998544422110 00 000 112222222 23778888
Q ss_pred HHhhhcccCCceEEEEeeCcccccccccCCCcceEEEEEcCCC
Q psy1221 642 SDYGTSVEKGGALMLSVIGGKLSEGLNFSDDLGRCVVVMCNSN 684 (690)
Q Consensus 642 ~~f~~~~~~~~aiLfaV~gG~~sEGIDf~g~~~r~ViivgLPf 684 (690)
..|++. +..+++++ -.+-=|||+-+ +-+||..|+|-
T Consensus 358 ~~~~~g---~~~~~~st--~AlelgidiG~--ldavi~~g~P~ 393 (851)
T COG1205 358 AEFKEG---ELLGVIAT--NALELGIDIGS--LDAVIAYGYPG 393 (851)
T ss_pred HHHhcC---CccEEecc--hhhhhceeehh--hhhHhhcCCCC
Confidence 899876 56777777 66888999976 77899999986
No 125
>KOG0926|consensus
Probab=80.11 E-value=5.3 Score=46.95 Aligned_cols=54 Identities=17% Similarity=0.302 Sum_probs=41.4
Q ss_pred ceeeeccccCChHHHHHHHHHHHHhhhcc-cCcEEEEeccHHHHHHHHHHHHhcC
Q psy1221 560 KFDLTFENRTKGDTLKEIAMTITNLCTIV-PKGMVCFFPSYDYEAIVYNYMRDNH 613 (690)
Q Consensus 560 ~~~~~~~~r~~~~~~~~l~~~I~~l~~~~-~gg~lVfF~Sy~~l~~v~~~~~~~~ 613 (690)
+++..|..|...+|+.+--+-...+.+.. |||+|||.|--...++..+.++++.
T Consensus 451 PVsIHF~krT~~DYi~eAfrKtc~IH~kLP~G~ILVFvTGQqEV~qL~~kLRK~~ 505 (1172)
T KOG0926|consen 451 PVSIHFNKRTPDDYIAEAFRKTCKIHKKLPPGGILVFVTGQQEVDQLCEKLRKRF 505 (1172)
T ss_pred ceEEEeccCCCchHHHHHHHHHHHHhhcCCCCcEEEEEeChHHHHHHHHHHHhhC
Confidence 45556778877778666555556666544 6999999999999999999999763
No 126
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=80.04 E-value=38 Score=40.56 Aligned_cols=82 Identities=7% Similarity=0.083 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHhhhcccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCchhHHHHHHHhhhcccCC
Q psy1221 572 DTLKEIAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKTSEVDKVLSDYGTSVEKG 651 (690)
Q Consensus 572 ~~~~~l~~~I~~l~~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~~~~~~~l~~f~~~~~~~ 651 (690)
+-..++.+.|.+.. ..+..+|||+.|-...+.+.+.+.+.++. ...+-.... +.+..+-.+.- ..
T Consensus 408 ~K~~ai~~~i~~~~-~~~~pvLIft~s~~~se~ls~~L~~~gi~----------~~~L~a~~~-~~E~~ii~~ag---~~ 472 (762)
T TIGR03714 408 EKLMATLEDVKEYH-ETGQPVLLITGSVEMSEIYSELLLREGIP----------HNLLNAQNA-AKEAQIIAEAG---QK 472 (762)
T ss_pred HHHHHHHHHHHHHh-hCCCCEEEEECcHHHHHHHHHHHHHCCCC----------EEEecCCCh-HHHHHHHHHcC---CC
Confidence 44566666666554 34667999999999999999999876543 233333322 22222222221 15
Q ss_pred ceEEEEeeCcccccccccC
Q psy1221 652 GALMLSVIGGKLSEGLNFS 670 (690)
Q Consensus 652 ~aiLfaV~gG~~sEGIDf~ 670 (690)
|+|+.|+ .-.+.|+|++
T Consensus 473 g~VlIAT--dmAgRGtDI~ 489 (762)
T TIGR03714 473 GAVTVAT--SMAGRGTDIK 489 (762)
T ss_pred CeEEEEc--cccccccCCC
Confidence 7999888 8899999998
No 127
>PLN02908 threonyl-tRNA synthetase
Probab=79.23 E-value=2.7 Score=49.97 Aligned_cols=74 Identities=16% Similarity=0.115 Sum_probs=56.4
Q ss_pred eHHHHHHHHHhhhhccCCcccCCceeEEEEeCCccchHHHHhHhhhhhcCC-cccCCcccccHHHHHhhhhhcCCC
Q psy1221 143 GVERLFSIIENRNAEQGVKVKTTSTQVYVASAQKNLVEPRMQLCHELWGGE-KTQEKPKLSGLQSFLKGVQENNPN 217 (690)
Q Consensus 143 ~~~~l~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~l~~~L~~~~-i~~~~~~~~~Lk~~lk~~~kl~~~ 217 (690)
++||++.+|.+... .....+..+.+|+|++.++.....++++++.||+++ .++.+....++++.++.+++.+..
T Consensus 567 siERli~iL~e~~~-g~~p~wlsp~qv~Vipv~~~~~~~A~~va~~LR~~Gi~vevd~~~~~l~kkir~A~~~g~~ 641 (686)
T PLN02908 567 SVERMFAILLEHYA-GKWPFWLSPRQAIVVPISEKSQDYAEEVRAQLHAAGFYVDVDVTDRKIQKKVREAQLAQYN 641 (686)
T ss_pred hHHHHHHHHHHHcC-CCCCCCCCCceEEEEEECHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHcCCC
Confidence 89999999865311 011123456799999999888889999999999954 455566778999999999888764
No 128
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=78.81 E-value=2.8 Score=38.03 Aligned_cols=56 Identities=14% Similarity=0.066 Sum_probs=45.1
Q ss_pred ccCCceeEEEEeCC--ccchHHHHhHhhhhhcCC-cccCCcccccHHHHHhhhhhcCCCC
Q psy1221 162 VKTTSTQVYVASAQ--KNLVEPRMQLCHELWGGE-KTQEKPKLSGLQSFLKGVQENNPNL 218 (690)
Q Consensus 162 ~~~~~~~v~v~~~~--~~~~~~~~~l~~~L~~~~-i~~~~~~~~~Lk~~lk~~~kl~~~~ 218 (690)
.+-.+.+|+|++.+ +.....++.++..||+.+ .++.+.. .++++.++.+++.++..
T Consensus 22 ~~lap~~v~Ii~~~~~~~~~~~a~~la~~LR~~gi~v~~d~~-~sl~kqlk~A~k~g~~~ 80 (121)
T cd00858 22 PALAPIKVAVLPLVKRDELVEIAKEISEELRELGFSVKYDDS-GSIGRRYARQDEIGTPF 80 (121)
T ss_pred CCcCCcEEEEEecCCcHHHHHHHHHHHHHHHHCCCEEEEeCC-CCHHHHHHHhHhcCCCE
Confidence 34567899999998 777788999999999854 4555666 89999999999888653
No 129
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=78.48 E-value=5.5 Score=50.18 Aligned_cols=39 Identities=18% Similarity=0.225 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHhccCCeEEEEcCccchHHHHHhhcC
Q psy1221 362 DTLKEIAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYMP 400 (690)
Q Consensus 362 ~~~~~l~~~i~~~~~~~pgg~lvFFpSY~~l~~v~~~~~ 400 (690)
++.+.+..+|.+++..-+|.+|||+|+..-.+.+.+.++
T Consensus 262 ~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~ 300 (1283)
T TIGR01967 262 DQLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILR 300 (1283)
T ss_pred hHHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHH
Confidence 456778888888887788999999999999888887774
No 130
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=78.31 E-value=2.9 Score=35.28 Aligned_cols=51 Identities=12% Similarity=0.102 Sum_probs=41.6
Q ss_pred eeEEEEeCCccchHHHHhHhhhhhcCC-cccCCcccccHHHHHhhhhhcCCC
Q psy1221 167 TQVYVASAQKNLVEPRMQLCHELWGGE-KTQEKPKLSGLQSFLKGVQENNPN 217 (690)
Q Consensus 167 ~~v~v~~~~~~~~~~~~~l~~~L~~~~-i~~~~~~~~~Lk~~lk~~~kl~~~ 217 (690)
.+|+|++.++.....++.+++.||..+ ..+.+....++.+.++.+++.+..
T Consensus 2 ~~v~ii~~~~~~~~~a~~~~~~Lr~~g~~v~~d~~~~~~~~~~~~a~~~g~~ 53 (91)
T cd00860 2 VQVVVIPVTDEHLDYAKEVAKKLSDAGIRVEVDLRNEKLGKKIREAQLQKIP 53 (91)
T ss_pred eEEEEEeeCchHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHcCCC
Confidence 578899988888889999999999854 444455678999999999888764
No 131
>KOG0922|consensus
Probab=78.18 E-value=12 Score=43.17 Aligned_cols=93 Identities=13% Similarity=0.338 Sum_probs=60.7
Q ss_pred HHHHHh-h-cceEEEeCCCCCchhhHHHHhhccCCCCCCceEEEEeCCCccCCCeeEEEeecCCCCcceeeeccccCChH
Q psy1221 495 FTDIVQ-D-ARSIIVAGGTMEPVSEFKDQLFGSLGVPESRIHHFSCGHVIPKENILPLILCSGPTNRKFDLTFENRTKGD 572 (690)
Q Consensus 495 ~~~~~~-~-~~svil~SgTLsP~~~f~~~l~~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 572 (690)
+++++. + .=.+|+|||||.- +-|++++.. -++..+ -+.-|| ++.-|.+....+
T Consensus 186 LKki~~~R~~LklIimSATlda-~kfS~yF~~------a~i~~i-~GR~fP-----------------Vei~y~~~p~~d 240 (674)
T KOG0922|consen 186 LKKILKKRPDLKLIIMSATLDA-EKFSEYFNN------APILTI-PGRTFP-----------------VEILYLKEPTAD 240 (674)
T ss_pred HHHHHhcCCCceEEEEeeeecH-HHHHHHhcC------CceEee-cCCCCc-----------------eeEEeccCCchh
Confidence 455543 2 2379999999954 677666622 112111 111222 233344444568
Q ss_pred HHHHHHHHHHHhhhc-ccCcEEEEeccHHHHHHHHHHHHhc
Q psy1221 573 TLKEIAMTITNLCTI-VPKGMVCFFPSYDYEAIVYNYMRDN 612 (690)
Q Consensus 573 ~~~~l~~~I~~l~~~-~~gg~lVfF~Sy~~l~~v~~~~~~~ 612 (690)
|+++....+.++... -||.+|||.|.-+..+.+.+.+.+.
T Consensus 241 Yv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~ 281 (674)
T KOG0922|consen 241 YVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRER 281 (674)
T ss_pred hHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHH
Confidence 888888888887764 5788999999999999999999854
No 132
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=78.00 E-value=5.9 Score=49.87 Aligned_cols=40 Identities=15% Similarity=0.122 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHHHHhccCCeEEEEcCccchHHHHHhhcC
Q psy1221 361 GDTLKEIAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYMP 400 (690)
Q Consensus 361 ~~~~~~l~~~i~~~~~~~pgg~lvFFpSY~~l~~v~~~~~ 400 (690)
.+++..+.+.+..++..-+|.+|||+|+..-.+.+.+.+.
T Consensus 268 ~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~ 307 (1294)
T PRK11131 268 RDQLQAIFDAVDELGREGPGDILIFMSGEREIRDTADALN 307 (1294)
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHH
Confidence 4567777777777777778999999999999888887774
No 133
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=77.70 E-value=18 Score=43.80 Aligned_cols=83 Identities=10% Similarity=0.150 Sum_probs=61.6
Q ss_pred hHHHHHHHHHHHHhhhcccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCchhHHHHHHHhhhcccC
Q psy1221 571 GDTLKEIAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKTSEVDKVLSDYGTSVEK 650 (690)
Q Consensus 571 ~~~~~~l~~~I~~l~~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~~~~~~~l~~f~~~~~~ 650 (690)
.+-+.++.+.|.++. ..+.-+|||..|-..-+.+.+.+++.++. ..++--.....+++.+.+.|+.
T Consensus 427 ~~k~~av~~~i~~~~-~~g~PVLVgt~Sie~sE~ls~~L~~~gi~---------h~vLnak~~q~Ea~iia~Ag~~---- 492 (896)
T PRK13104 427 ADKFQAIIEDVRECG-VRKQPVLVGTVSIEASEFLSQLLKKENIK---------HQVLNAKFHEKEAQIIAEAGRP---- 492 (896)
T ss_pred HHHHHHHHHHHHHHH-hCCCCEEEEeCcHHHHHHHHHHHHHcCCC---------eEeecCCCChHHHHHHHhCCCC----
Confidence 356677777777654 46778999999999999999999987653 2233222233467778877764
Q ss_pred CceEEEEeeCcccccccccC
Q psy1221 651 GGALMLSVIGGKLSEGLNFS 670 (690)
Q Consensus 651 ~~aiLfaV~gG~~sEGIDf~ 670 (690)
|+|+.|+ .-.+.|+|+.
T Consensus 493 -G~VtIAT--NmAGRGtDI~ 509 (896)
T PRK13104 493 -GAVTIAT--NMAGRGTDIV 509 (896)
T ss_pred -CcEEEec--cCccCCccee
Confidence 6899888 8899999986
No 134
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=77.48 E-value=9.5 Score=38.51 Aligned_cols=84 Identities=18% Similarity=0.097 Sum_probs=50.3
Q ss_pred HHHHHHhCCCceEEEecCCCC--------CCCCcceeE--EEEEEcC-CCcceEeeccchhhhhhhcCCCCCCCCccchh
Q psy1221 54 FHYCQIYGLKDTIVFDLSLAR--------GLDYYTGVI--YEAVLKD-QAVGSVAGGGRYDNLVGMFDPKNKTTPCVAAK 122 (690)
Q Consensus 54 ~~~l~~~g~~~~i~~d~~~~r--------~~~YYtG~v--Fe~~~~~-~~~~~i~~GGRYD~L~~~f~~~~~~~~~~g~~ 122 (690)
.+.++.+|++ +.+.++-.. +.+||.+.. |+++.+. +....|+++++|+++-..+... ....-|
T Consensus 140 ~~~l~~lgl~--~~i~~~~~~~~~~~~~~~~~~~~~~~~d~e~~~~~~g~~~~i~~~~~~~~~~~~~~~~--~~~~~~-- 213 (235)
T cd00670 140 EEIARELGLP--VRVVVADDPFFGRGGKRGLDAGRETVVEFELLLPLPGRAKETAVGSANVHLDHFGASF--KIDEDG-- 213 (235)
T ss_pred HHHHHHcCCc--EEEEEccChhhccCCccccccccCCceEEEEEecCCCCceeeeEEEeecchhhhhccE--EEccCC--
Confidence 3445667875 666555443 334777754 5555544 3456899999998887765421 111001
Q ss_pred hhhhhhcccccccCcceeeeeHHHHHHHH
Q psy1221 123 LLHEVQGLLETSCRSCREDIGVERLFSII 151 (690)
Q Consensus 123 ~~~~~~~~~~~~~~~~g~~~~~~~l~~~~ 151 (690)
....++.|++++++||++.++
T Consensus 214 --------~~~~~~~~~~~~~~eR~l~al 234 (235)
T cd00670 214 --------GGRAHTGCGGAGGEERLVLAL 234 (235)
T ss_pred --------CceeeEEEeCccHHHHHHHHH
Confidence 011256788899999998765
No 135
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=77.12 E-value=15 Score=42.99 Aligned_cols=76 Identities=13% Similarity=0.136 Sum_probs=55.2
Q ss_pred ee-HHHHHHHHHhhhhcc-----C--CcccCCceeEEEEeCCccchHHHHhHhhhhhcCCc-ccCCcccccHHHHHhhhh
Q psy1221 142 IG-VERLFSIIENRNAEQ-----G--VKVKTTSTQVYVASAQKNLVEPRMQLCHELWGGEK-TQEKPKLSGLQSFLKGVQ 212 (690)
Q Consensus 142 ~~-~~~l~~~~~~~~~~~-----~--~~~~~~~~~v~v~~~~~~~~~~~~~l~~~L~~~~i-~~~~~~~~~Lk~~lk~~~ 212 (690)
+| ++|++.++-...... + ...+-.+.+|+|++.++.....+.++++.||..++ +..+....++.+.++.++
T Consensus 467 ~GsieR~i~aliE~~~~~~~~g~gl~~P~~lAP~qV~IIpi~e~~~~~A~eIa~~Lr~~GirV~lDdr~~slgkKir~A~ 546 (613)
T PRK03991 467 TGSIERVIYALLEKAAKEEEEGKVPMLPTWLSPTQVRVIPVSERHLDYAEEVADKLEAAGIRVDVDDRDESLGKKIRDAG 546 (613)
T ss_pred EeHHHHHHHHHHHHhCCccccCceeEcCccccCceEEEEEeCHHHHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHH
Confidence 55 999998765432211 1 23445678999999988888899999999998644 444555678999999988
Q ss_pred hcCCC
Q psy1221 213 ENNPN 217 (690)
Q Consensus 213 kl~~~ 217 (690)
+.+..
T Consensus 547 ~~GiP 551 (613)
T PRK03991 547 KEWIP 551 (613)
T ss_pred HcCCC
Confidence 87654
No 136
>KOG0926|consensus
Probab=76.94 E-value=4.5 Score=47.47 Aligned_cols=49 Identities=16% Similarity=0.300 Sum_probs=36.1
Q ss_pred eEEeecccCChHHHHHHHHHHHHHHhccC-CeEEEEcCccchHHHHHhhc
Q psy1221 351 FDLTFENRTKGDTLKEIAMTITNLCTIVP-KGMVCFFPSYDYEAIVYNYM 399 (690)
Q Consensus 351 l~~~y~~R~~~~~~~~l~~~i~~~~~~~p-gg~lvFFpSY~~l~~v~~~~ 399 (690)
++..|+.|...+|+..--+-...|-+..| ||+|||.+--.=.+++.+.+
T Consensus 452 VsIHF~krT~~DYi~eAfrKtc~IH~kLP~G~ILVFvTGQqEV~qL~~kL 501 (1172)
T KOG0926|consen 452 VSIHFNKRTPDDYIAEAFRKTCKIHKKLPPGGILVFVTGQQEVDQLCEKL 501 (1172)
T ss_pred eEEEeccCCCchHHHHHHHHHHHHhhcCCCCcEEEEEeChHHHHHHHHHH
Confidence 45568888877887766666666766665 99999999877666666555
No 137
>KOG0336|consensus
Probab=75.86 E-value=18 Score=39.45 Aligned_cols=76 Identities=12% Similarity=0.132 Sum_probs=48.2
Q ss_pred ccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCchhHHHHHHHhhhcccCCceEEEEeeCccccccc
Q psy1221 588 VPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKTSEVDKVLSDYGTSVEKGGALMLSVIGGKLSEGL 667 (690)
Q Consensus 588 ~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~~~~~~~l~~f~~~~~~~~aiLfaV~gG~~sEGI 667 (690)
....+++|..+.-+.+.+...+.-.++. ..-+--.+..++++..++.|+.. .=-||.|+ .-.|.|+
T Consensus 464 ~ndKvIiFv~~K~~AD~LSSd~~l~gi~---------~q~lHG~r~Q~DrE~al~~~ksG---~vrILvaT--DlaSRGl 529 (629)
T KOG0336|consen 464 SNDKVIIFVSRKVMADHLSSDFCLKGIS---------SQSLHGNREQSDREMALEDFKSG---EVRILVAT--DLASRGL 529 (629)
T ss_pred CCceEEEEEechhhhhhccchhhhcccc---------hhhccCChhhhhHHHHHHhhhcC---ceEEEEEe--chhhcCC
Confidence 3567888888877766555544432222 01111122234788999999875 45788777 8999999
Q ss_pred ccCCCcceEEEE
Q psy1221 668 NFSDDLGRCVVV 679 (690)
Q Consensus 668 Df~g~~~r~Vii 679 (690)
|++| ..+|+=
T Consensus 530 Dv~D--iTHV~N 539 (629)
T KOG0336|consen 530 DVPD--ITHVYN 539 (629)
T ss_pred Cchh--cceeec
Confidence 9987 445543
No 138
>KOG0337|consensus
Probab=75.33 E-value=25 Score=38.70 Aligned_cols=69 Identities=12% Similarity=0.065 Sum_probs=47.6
Q ss_pred cCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCchhHHHHHHHhhhcccCCceEEEEeeCcccccccc
Q psy1221 589 PKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKTSEVDKVLSDYGTSVEKGGALMLSVIGGKLSEGLN 668 (690)
Q Consensus 589 ~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~~~~~~~l~~f~~~~~~~~aiLfaV~gG~~sEGID 668 (690)
+..++||.+..-..+-+.+-++..++. ...+.-.-+...+..-+.+|... ++++|..+ .--+.|+|
T Consensus 261 ~~~t~vf~~tk~hve~~~~ll~~~g~~---------~s~iysslD~~aRk~~~~~F~~~---k~~~lvvT--dvaaRG~d 326 (529)
T KOG0337|consen 261 DKQTIVFVATKHHVEYVRGLLRDFGGE---------GSDIYSSLDQEARKINGRDFRGR---KTSILVVT--DVAARGLD 326 (529)
T ss_pred ccceeEEecccchHHHHHHHHHhcCCC---------ccccccccChHhhhhccccccCC---ccceEEEe--hhhhccCC
Confidence 447899999999999998888877654 11222222223444456777765 67888766 67899999
Q ss_pred cCC
Q psy1221 669 FSD 671 (690)
Q Consensus 669 f~g 671 (690)
.|.
T Consensus 327 ipl 329 (529)
T KOG0337|consen 327 IPL 329 (529)
T ss_pred Ccc
Confidence 986
No 139
>KOG0335|consensus
Probab=75.27 E-value=31 Score=38.75 Aligned_cols=78 Identities=12% Similarity=0.237 Sum_probs=61.8
Q ss_pred cEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCchhHHHHHHHhhhcccCCceEEEEeeCcccccccccC
Q psy1221 591 GMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKTSEVDKVLSDYGTSVEKGGALMLSVIGGKLSEGLNFS 670 (690)
Q Consensus 591 g~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~~~~~~~l~~f~~~~~~~~aiLfaV~gG~~sEGIDf~ 670 (690)
.++||.-..+...++...+...++. -+.|..+.. ..+++..|..|+.. .--+|.|+ ...+.|+|++
T Consensus 339 ~tlvFvEt~~~~d~l~~~l~~~~~~--------~~sIhg~~t-q~er~~al~~Fr~g---~~pvlVaT--~VaaRGlDi~ 404 (482)
T KOG0335|consen 339 KTLVFVETKRGADELAAFLSSNGYP--------AKSIHGDRT-QIEREQALNDFRNG---KAPVLVAT--NVAARGLDIP 404 (482)
T ss_pred eEEEEeeccchhhHHHHHHhcCCCC--------ceeecchhh-hhHHHHHHHHhhcC---CcceEEEe--hhhhcCCCCC
Confidence 6999999999999999988876643 234444332 34789999999986 45688877 8899999999
Q ss_pred CCcceEEEEEcCCC
Q psy1221 671 DDLGRCVVVMCNSN 684 (690)
Q Consensus 671 g~~~r~ViivgLPf 684 (690)
+ .+.||..=+|=
T Consensus 405 ~--V~hVInyDmP~ 416 (482)
T KOG0335|consen 405 N--VKHVINYDMPA 416 (482)
T ss_pred C--CceeEEeecCc
Confidence 7 88999988873
No 140
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=74.93 E-value=5.1 Score=46.55 Aligned_cols=79 Identities=15% Similarity=0.107 Sum_probs=55.8
Q ss_pred eeeeHHHHHHHHHhhhhc-cCCc--ccCCceeEEEEeCC---ccchHHHHhHhhhhhcCCc-ccCCcccccHHHHHhhhh
Q psy1221 140 EDIGVERLFSIIENRNAE-QGVK--VKTTSTQVYVASAQ---KNLVEPRMQLCHELWGGEK-TQEKPKLSGLQSFLKGVQ 212 (690)
Q Consensus 140 ~~~~~~~l~~~~~~~~~~-~~~~--~~~~~~~v~v~~~~---~~~~~~~~~l~~~L~~~~i-~~~~~~~~~Lk~~lk~~~ 212 (690)
|+||++||+.++.+.... .+.. ....+.+|+|++.+ +...+.+.++++.||..++ ...+....++...++.++
T Consensus 439 ~gIGv~Rli~al~e~~~d~~gl~~P~~iaP~~v~Iv~~~~~~~~~~~~a~~i~~~L~~~gi~v~~Ddr~~~~g~k~~~ad 518 (565)
T PRK09194 439 YGIGVSRLVAAAIEQNHDEKGIIWPKAIAPFDVHIVPVNMKDEEVKELAEKLYAELQAAGIEVLLDDRKERPGVKFADAD 518 (565)
T ss_pred EechHHHHHHHHHHhhccccCccCCCccCCceEEEEECCCCcHHHHHHHHHHHHHHhccCCeEEEECCCCCHHHHHHHHH
Confidence 899999999988764211 1211 23467899999987 4456788899999998654 333444568889999888
Q ss_pred hcCCCC
Q psy1221 213 ENNPNL 218 (690)
Q Consensus 213 kl~~~~ 218 (690)
..+...
T Consensus 519 ~~GiP~ 524 (565)
T PRK09194 519 LIGIPH 524 (565)
T ss_pred hcCCCE
Confidence 887644
No 141
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=74.48 E-value=7.7 Score=47.02 Aligned_cols=36 Identities=14% Similarity=0.185 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhccCCeEEEEcCccchHHHHHhhcC
Q psy1221 365 KEIAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYMP 400 (690)
Q Consensus 365 ~~l~~~i~~~~~~~pgg~lvFFpSY~~l~~v~~~~~ 400 (690)
+.++..|..+.+..+|.+|||+|+..-.+.+.+.+.
T Consensus 198 ~~v~~~l~~~l~~~~g~iLVFlpg~~ei~~l~~~L~ 233 (812)
T PRK11664 198 EAVARATAELLRQESGSLLLFLPGVGEIQRVQEQLA 233 (812)
T ss_pred HHHHHHHHHHHHhCCCCEEEEcCCHHHHHHHHHHHH
Confidence 445666777766668999999999999998888774
No 142
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=74.01 E-value=11 Score=45.81 Aligned_cols=37 Identities=8% Similarity=0.124 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhccCCeEEEEcCccchHHHHHhhcC
Q psy1221 364 LKEIAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYMP 400 (690)
Q Consensus 364 ~~~l~~~i~~~~~~~pgg~lvFFpSY~~l~~v~~~~~ 400 (690)
...+...|..+.+..+|.+|||+|+..-.+.+++.+.
T Consensus 194 ~~~v~~~l~~~l~~~~g~iLVFlpg~~eI~~l~~~L~ 230 (819)
T TIGR01970 194 EDAVSRAVEHALASETGSILVFLPGQAEIRRVQEQLA 230 (819)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHH
Confidence 3445566666666678999999999988888877663
No 143
>KOG0952|consensus
Probab=72.50 E-value=63 Score=39.67 Aligned_cols=157 Identities=13% Similarity=0.065 Sum_probs=83.8
Q ss_pred cceEEEeCCCCCchhhHHHHhhccCCCCCCceEEEEeCCCccCCCeeEEEeecCCCCcceeeeccccCCh-HHHHHHHHH
Q psy1221 502 ARSIIVAGGTMEPVSEFKDQLFGSLGVPESRIHHFSCGHVIPKENILPLILCSGPTNRKFDLTFENRTKG-DTLKEIAMT 580 (690)
Q Consensus 502 ~~svil~SgTLsP~~~f~~~l~~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~r~~~-~~~~~l~~~ 580 (690)
.-.++-.||||....+.++.| +++. ..-.++.+..|.+-.+.-.++.. + .. .++... .+.+...+.
T Consensus 275 ~IRivgLSATlPN~eDvA~fL----~vn~-~~glfsFd~~yRPvpL~~~~iG~-----k--~~-~~~~~~~~~d~~~~~k 341 (1230)
T KOG0952|consen 275 MIRIVGLSATLPNYEDVARFL----RVNP-YAGLFSFDQRYRPVPLTQGFIGI-----K--GK-KNRQQKKNIDEVCYDK 341 (1230)
T ss_pred heEEEEeeccCCCHHHHHHHh----cCCC-ccceeeecccccccceeeeEEee-----e--cc-cchhhhhhHHHHHHHH
Confidence 346889999998888888877 4431 11234455545433322222210 0 01 122221 222223333
Q ss_pred HHHhhhcccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCC-------------C------c-hhHHHH
Q psy1221 581 ITNLCTIVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPK-------------K------T-SEVDKV 640 (690)
Q Consensus 581 I~~l~~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~-------------~------~-~~~~~~ 640 (690)
+.+.+ .-+.-++||.+|...--+..+.+.+.... ...+..|.-.+ . . +++..+
T Consensus 342 v~e~~-~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~------~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~ 414 (1230)
T KOG0952|consen 342 VVEFL-QEGHQVLVFVHSRNETIRTAKKLRERAET------NGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLV 414 (1230)
T ss_pred HHHHH-HcCCeEEEEEecChHHHHHHHHHHHHHHh------cCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHH
Confidence 33333 23446999999999888888777754221 12223333222 1 1 122222
Q ss_pred HHHhhhcccCCceEEEEeeCcccccccccCCCcceEEEEEcCCCCC
Q psy1221 641 LSDYGTSVEKGGALMLSVIGGKLSEGLNFSDDLGRCVVVMCNSNPL 686 (690)
Q Consensus 641 l~~f~~~~~~~~aiLfaV~gG~~sEGIDf~g~~~r~ViivgLPfp~ 686 (690)
=+.|+.. .=.||+|+ ..++=|+|+|. -+|||-|-|+-.
T Consensus 415 E~~F~~G---~i~vL~cT--aTLAwGVNLPA---~aViIKGT~~yd 452 (1230)
T KOG0952|consen 415 EKEFKEG---HIKVLCCT--ATLAWGVNLPA---YAVIIKGTQVYD 452 (1230)
T ss_pred HHHHhcC---CceEEEec--ceeeeccCCcc---eEEEecCCcccc
Confidence 2234443 34788888 66999999996 678888877543
No 144
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type. This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases.
Probab=70.86 E-value=7.3 Score=44.76 Aligned_cols=82 Identities=11% Similarity=0.150 Sum_probs=55.4
Q ss_pred CcceeeeeHHHHHHHHHhhhhcc----C-------CcccCCceeEEEEeCCcc--chHHHHhHhhhhhcCC-cccCCccc
Q psy1221 136 RSCREDIGVERLFSIIENRNAEQ----G-------VKVKTTSTQVYVASAQKN--LVEPRMQLCHELWGGE-KTQEKPKL 201 (690)
Q Consensus 136 ~~~g~~~~~~~l~~~~~~~~~~~----~-------~~~~~~~~~v~v~~~~~~--~~~~~~~l~~~L~~~~-i~~~~~~~ 201 (690)
+-+=-|+|+|||+.++....... . ...+..+.+|+|++.++. ....++++++.||..+ .+..+...
T Consensus 416 ~VIepS~GIdRIi~ALle~~~~e~~~~~~~r~vL~lp~~lAP~kV~VIpl~~~~el~~~A~eIa~~LR~~GI~VeiD~s~ 495 (551)
T TIGR00389 416 HVIEPSFGIDRIIYALLEHSYQEEVLDGEEREVLRLPPHLAPIKVAVLPLVNKEELKEIAKEIFQALRKTGIRIKYDDSG 495 (551)
T ss_pred eEEEcccCHHHHHHHHHHhhCccccccccccceeccCCccCCceEEEEEecCcHHHHHHHHHHHHHHHHCCCEEEEECCC
Confidence 44446789999997765422210 0 011226789999998854 6778899999999864 44444443
Q ss_pred ccHHHHHhhhhhcCCCC
Q psy1221 202 SGLQSFLKGVQENNPNL 218 (690)
Q Consensus 202 ~~Lk~~lk~~~kl~~~~ 218 (690)
++.+.++.+++.+...
T Consensus 496 -sIGKq~rrADeiGiPf 511 (551)
T TIGR00389 496 -TIGKRYRRADEIGTPF 511 (551)
T ss_pred -CHHHHHHHHHHcCCCE
Confidence 4999999999887653
No 145
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=70.64 E-value=6.6 Score=33.19 Aligned_cols=51 Identities=8% Similarity=0.036 Sum_probs=40.0
Q ss_pred eeEEEEeCCc---cchHHHHhHhhhhhcCC-cccCCcccccHHHHHhhhhhcCCC
Q psy1221 167 TQVYVASAQK---NLVEPRMQLCHELWGGE-KTQEKPKLSGLQSFLKGVQENNPN 217 (690)
Q Consensus 167 ~~v~v~~~~~---~~~~~~~~l~~~L~~~~-i~~~~~~~~~Lk~~lk~~~kl~~~ 217 (690)
.+|+|++.++ .....++.++..||+.+ ....+....++++.++.+++.+..
T Consensus 2 ~~v~ii~~~~~~~~~~~~a~~~~~~Lr~~g~~v~~~~~~~~~~k~~~~a~~~g~~ 56 (94)
T cd00738 2 IDVAIVPLTDPRVEAREYAQKLLNALLANGIRVLYDDRERKIGKKFREADLRGVP 56 (94)
T ss_pred eEEEEEECCCCcHHHHHHHHHHHHHHHHCCCEEEecCCCcCHhHHHHHHHhCCCC
Confidence 4688998887 77889999999999854 444455567899999998887653
No 146
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=70.51 E-value=20 Score=44.47 Aligned_cols=86 Identities=10% Similarity=0.108 Sum_probs=55.9
Q ss_pred cccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCch-hHHHHHHHhhhcccCCceEEEEeeCccccc
Q psy1221 587 IVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKTS-EVDKVLSDYGTSVEKGGALMLSVIGGKLSE 665 (690)
Q Consensus 587 ~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~~-~~~~~l~~f~~~~~~~~aiLfaV~gG~~sE 665 (690)
.....+|||...-.+|+.+.+++...++ +.+.+.+..+. +++.++++|...-...-.+|+++ ....+
T Consensus 485 ~~g~KVLIFSQft~~LdiLed~L~~~g~----------~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLST--rAGGl 552 (1033)
T PLN03142 485 ERDSRVLIFSQMTRLLDILEDYLMYRGY----------QYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLST--RAGGL 552 (1033)
T ss_pred hcCCeEEeehhHHHHHHHHHHHHHHcCC----------cEEEECCCCCHHHHHHHHHHhccccCCceEEEEec--ccccc
Confidence 3455677766555556666555654332 34555666553 89999999976411112345555 78999
Q ss_pred ccccCCCcceEEEEEcCCCCC
Q psy1221 666 GLNFSDDLGRCVVVMCNSNPL 686 (690)
Q Consensus 666 GIDf~g~~~r~ViivgLPfp~ 686 (690)
|||+.. +..||+.-+|+-|
T Consensus 553 GINLt~--Ad~VIiyD~dWNP 571 (1033)
T PLN03142 553 GINLAT--ADIVILYDSDWNP 571 (1033)
T ss_pred CCchhh--CCEEEEeCCCCCh
Confidence 999987 7999999888654
No 147
>KOG4150|consensus
Probab=70.24 E-value=35 Score=38.83 Aligned_cols=145 Identities=13% Similarity=0.161 Sum_probs=80.9
Q ss_pred eEEEeCCCC-CchhhHHHHhhccCCCCCCceEEEEeCCCccCCCeeEEEeecCCCCcceeeeccccCChHHHHHHHHHHH
Q psy1221 504 SIIVAGGTM-EPVSEFKDQLFGSLGVPESRIHHFSCGHVIPKENILPLILCSGPTNRKFDLTFENRTKGDTLKEIAMTIT 582 (690)
Q Consensus 504 svil~SgTL-sP~~~f~~~l~~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~I~ 582 (690)
.++=-|+|+ +|....++++ |+.+...+ -.-+||-..+.+.++-.+-.|+. +|..+.++.+.+..+.
T Consensus 453 ~~~~~~~~~K~~~~~~~~~~----~~~E~~Li-~~DGSPs~~K~~V~WNP~~~P~~--------~~~~~~~i~E~s~~~~ 519 (1034)
T KOG4150|consen 453 GVYDGDTPYKDRTRLRSELA----NLSELELV-TIDGSPSSEKLFVLWNPSAPPTS--------KSEKSSKVVEVSHLFA 519 (1034)
T ss_pred ceEeCCCCcCCHHHHHHHhc----CCcceEEE-EecCCCCccceEEEeCCCCCCcc--------hhhhhhHHHHHHHHHH
Confidence 466667787 3444443333 66543222 23445554544433333323322 3344578888999988
Q ss_pred HhhhcccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCC--------------chhHHHHHHHhhhcc
Q psy1221 583 NLCTIVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKK--------------TSEVDKVLSDYGTSV 648 (690)
Q Consensus 583 ~l~~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~--------------~~~~~~~l~~f~~~~ 648 (690)
+++. ..-+++.|+||...-+-+....++ ||+|... .+++.++=.+..
T Consensus 520 ~~i~-~~~R~IAFC~~R~~CEL~~~~~R~---------------I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F--- 580 (1034)
T KOG4150|consen 520 EMVQ-HGLRCIAFCPSRKLCELVLCLTRE---------------ILAETAPHLVEAITSYRGGYIAEDRRKIESDLF--- 580 (1034)
T ss_pred HHHH-cCCcEEEeccHHHHHHHHHHHHHH---------------HHHHhhHHHHHHHHhhcCccchhhHHHHHHHhh---
Confidence 8874 455789999999988777665552 1222110 012222211111
Q ss_pred cCCceEEEEe-eCcccccccccCCCcceEEEEEcCCCC
Q psy1221 649 EKGGALMLSV-IGGKLSEGLNFSDDLGRCVVVMCNSNP 685 (690)
Q Consensus 649 ~~~~aiLfaV-~gG~~sEGIDf~g~~~r~ViivgLPfp 685 (690)
++=|.|+ +...+-=|||+-+ +.+|+.+|.|+.
T Consensus 581 ---~G~L~giIaTNALELGIDIG~--LDAVl~~GFP~S 613 (1034)
T KOG4150|consen 581 ---GGKLCGIIATNALELGIDIGH--LDAVLHLGFPGS 613 (1034)
T ss_pred ---CCeeeEEEecchhhhcccccc--ceeEEEccCchh
Confidence 2223333 2356777999976 899999999985
No 148
>PHA02653 RNA helicase NPH-II; Provisional
Probab=69.64 E-value=30 Score=41.10 Aligned_cols=34 Identities=12% Similarity=0.109 Sum_probs=22.5
Q ss_pred HHHHHHHHHhccCCeEEEEcCccchHHHHHhhcC
Q psy1221 367 IAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYMP 400 (690)
Q Consensus 367 l~~~i~~~~~~~pgg~lvFFpSY~~l~~v~~~~~ 400 (690)
+.+.|.......+|.+|||+|+-.-.+.+.+.+.
T Consensus 383 ~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~ 416 (675)
T PHA02653 383 IVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLE 416 (675)
T ss_pred HHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHH
Confidence 3444443333345789999999888777777663
No 149
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=68.97 E-value=84 Score=36.01 Aligned_cols=40 Identities=13% Similarity=0.321 Sum_probs=31.6
Q ss_pred hHHHHHHHhhhcccCCceEEEEeeCcccccccccCCCcceEEEEEcC
Q psy1221 636 EVDKVLSDYGTSVEKGGALMLSVIGGKLSEGLNFSDDLGRCVVVMCN 682 (690)
Q Consensus 636 ~~~~~l~~f~~~~~~~~aiLfaV~gG~~sEGIDf~g~~~r~ViivgL 682 (690)
+.++++++|++. +-.||+|+ .-++.|+||++ +.+|+|+..
T Consensus 300 ~~~~~l~~f~~g---~~~ILVgT--~~i~kG~d~~~--v~lV~vl~a 339 (505)
T TIGR00595 300 AHEALLNQFANG---KADILIGT--QMIAKGHHFPN--VTLVGVLDA 339 (505)
T ss_pred HHHHHHHHHhcC---CCCEEEeC--cccccCCCCCc--ccEEEEEcC
Confidence 457899999885 67899999 55999999996 556666654
No 150
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=67.19 E-value=36 Score=41.34 Aligned_cols=83 Identities=13% Similarity=0.131 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHHHhhhcccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCchhHHHHHHHhhhcccC
Q psy1221 571 GDTLKEIAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKTSEVDKVLSDYGTSVEK 650 (690)
Q Consensus 571 ~~~~~~l~~~I~~l~~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~~~~~~~l~~f~~~~~~ 650 (690)
.+-+.++.+.|.++.+ .+..+|||..|-..-+.+...+...++. ..++--.....+++.+.+.|+.
T Consensus 432 ~~K~~Aii~ei~~~~~-~GrpVLV~t~sv~~se~ls~~L~~~gi~---------~~vLnak~~~~Ea~ii~~Ag~~---- 497 (908)
T PRK13107 432 DEKYQAIIKDIKDCRE-RGQPVLVGTVSIEQSELLARLMVKEKIP---------HEVLNAKFHEREAEIVAQAGRT---- 497 (908)
T ss_pred HHHHHHHHHHHHHHHH-cCCCEEEEeCcHHHHHHHHHHHHHCCCC---------eEeccCcccHHHHHHHHhCCCC----
Confidence 3556678888887764 5667999999999999999999876643 1222222222466777777654
Q ss_pred CceEEEEeeCcccccccccC
Q psy1221 651 GGALMLSVIGGKLSEGLNFS 670 (690)
Q Consensus 651 ~~aiLfaV~gG~~sEGIDf~ 670 (690)
|+|+.|+ .-.+.|+|+.
T Consensus 498 -G~VtIAT--nmAGRGTDIk 514 (908)
T PRK13107 498 -GAVTIAT--NMAGRGTDIV 514 (908)
T ss_pred -CcEEEec--CCcCCCccee
Confidence 6788888 8899999986
No 151
>KOG0334|consensus
Probab=66.91 E-value=39 Score=41.22 Aligned_cols=137 Identities=9% Similarity=0.142 Sum_probs=84.3
Q ss_pred hcceEEEeCCCCCc-hhhHHHHhhccCCCCCCceEEEEeCCCccCCCeeEEEeecCCCCcceeeeccccCChHHHHHHHH
Q psy1221 501 DARSIIVAGGTMEP-VSEFKDQLFGSLGVPESRIHHFSCGHVIPKENILPLILCSGPTNRKFDLTFENRTKGDTLKEIAM 579 (690)
Q Consensus 501 ~~~svil~SgTLsP-~~~f~~~l~~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~ 579 (690)
..|..+++|||+.- +..++..+.. ..+ . +.+-..+++.++-...+.+..+ .++-+.++-+
T Consensus 545 pdrQtvlfSatfpr~m~~la~~vl~-~Pv---e-iiv~~~svV~k~V~q~v~V~~~--------------e~eKf~kL~e 605 (997)
T KOG0334|consen 545 PDRQTVLFSATFPRSMEALARKVLK-KPV---E-IIVGGRSVVCKEVTQVVRVCAI--------------ENEKFLKLLE 605 (997)
T ss_pred hhhhhhhhhhhhhHHHHHHHHHhhc-CCe---e-EEEccceeEeccceEEEEEecC--------------chHHHHHHHH
Confidence 45678999999922 2333333322 111 1 2333445555443222322111 2234455666
Q ss_pred HHHHhhhcccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCC-CchhHHHHHHHhhhcccCCceEEEEe
Q psy1221 580 TITNLCTIVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPK-KTSEVDKVLSDYGTSVEKGGALMLSV 658 (690)
Q Consensus 580 ~I~~l~~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~-~~~~~~~~l~~f~~~~~~~~aiLfaV 658 (690)
.|....+ .+.++||..+-.-...+.+.|.+.++. ...+-.. ...+++..++.|++. .-.+|+++
T Consensus 606 Ll~e~~e--~~~tiiFv~~qe~~d~l~~~L~~ag~~----------~~slHGgv~q~dR~sti~dfK~~---~~~LLvaT 670 (997)
T KOG0334|consen 606 LLGERYE--DGKTIIFVDKQEKADALLRDLQKAGYN----------CDSLHGGVDQHDRSSTIEDFKNG---VVNLLVAT 670 (997)
T ss_pred HHHHHhh--cCCEEEEEcCchHHHHHHHHHHhcCcc----------hhhhcCCCchHHHHhHHHHHhcc---CceEEEeh
Confidence 6666655 788999999999999999999977653 1111121 224788999999986 45677776
Q ss_pred eCcccccccccCCCc
Q psy1221 659 IGGKLSEGLNFSDDL 673 (690)
Q Consensus 659 ~gG~~sEGIDf~g~~ 673 (690)
.-.+.|+|++...
T Consensus 671 --svvarGLdv~~l~ 683 (997)
T KOG0334|consen 671 --SVVARGLDVKELI 683 (997)
T ss_pred --hhhhcccccccce
Confidence 8899999999743
No 152
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=66.17 E-value=7.6 Score=32.20 Aligned_cols=49 Identities=14% Similarity=0.161 Sum_probs=37.1
Q ss_pred eeEEEEeCCccchHHHHhHhhhhhcCCc-ccCCcccccHHHHHhhhhhcC
Q psy1221 167 TQVYVASAQKNLVEPRMQLCHELWGGEK-TQEKPKLSGLQSFLKGVQENN 215 (690)
Q Consensus 167 ~~v~v~~~~~~~~~~~~~l~~~L~~~~i-~~~~~~~~~Lk~~lk~~~kl~ 215 (690)
++|+|++.++.....++.++..||..+. ...+....++.+.++.+.+..
T Consensus 2 ~~v~i~~~~~~~~~~a~~i~~~Lr~~g~~v~~~~~~~~~~~~~~~a~~~~ 51 (91)
T cd00859 2 VDVYVVPLGEGALSEALELAEQLRDAGIKAEIDYGGRKLKKQFKYADRSG 51 (91)
T ss_pred CcEEEEEcChHHHHHHHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHcC
Confidence 4789999888788899999999998644 333444457888888777665
No 153
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=63.87 E-value=7.5 Score=33.14 Aligned_cols=51 Identities=16% Similarity=0.127 Sum_probs=41.9
Q ss_pred eEEEEeCCc---cchHHHHhHhhhhhcCCc-ccCCcccccHHHHHhhhhhcCCCC
Q psy1221 168 QVYVASAQK---NLVEPRMQLCHELWGGEK-TQEKPKLSGLQSFLKGVQENNPNL 218 (690)
Q Consensus 168 ~v~v~~~~~---~~~~~~~~l~~~L~~~~i-~~~~~~~~~Lk~~lk~~~kl~~~~ 218 (690)
+|+|++.+. .....+..+++.||++++ ...+....++.+.++.+++.+..+
T Consensus 1 qv~Ii~~~~~~~~~~~~a~~l~~~L~~~gi~v~~d~~~~~~~k~~~~a~~~g~p~ 55 (94)
T PF03129_consen 1 QVVIIPVGKKDEEIIEYAQELANKLRKAGIRVELDDSDKSLGKQIKYADKLGIPF 55 (94)
T ss_dssp SEEEEESSCSHHHHHHHHHHHHHHHHHTTSEEEEESSSSTHHHHHHHHHHTTESE
T ss_pred CEEEEEeCCCcHHHHHHHHHHHHHHHHCCCEEEEECCCCchhHHHHHHhhcCCeE
Confidence 588999998 778889999999999764 455668889999999999886433
No 154
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=63.36 E-value=45 Score=37.63 Aligned_cols=86 Identities=13% Similarity=0.219 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhhhcccC-cEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCC------ch--hHHHHHHHh
Q psy1221 574 LKEIAMTITNLCTIVPK-GMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKK------TS--EVDKVLSDY 644 (690)
Q Consensus 574 ~~~l~~~I~~l~~~~~g-g~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~------~~--~~~~~l~~f 644 (690)
++.+-+.+.+..+..++ .++||-...+..+.+.+++.+.+.. .+..|+-+.+ ++ +..+++++|
T Consensus 350 l~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~--------~~~rFiGQa~r~~~~GMsQkeQ~eiI~~F 421 (542)
T COG1111 350 LEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIK--------ARVRFIGQASREGDKGMSQKEQKEIIDQF 421 (542)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCc--------ceeEEeeccccccccccCHHHHHHHHHHH
Confidence 44566666676655544 6666666667788899999876543 1235654221 11 567899999
Q ss_pred hhcccCCceEEEEeeCcccccccccCCC
Q psy1221 645 GTSVEKGGALMLSVIGGKLSEGLNFSDD 672 (690)
Q Consensus 645 ~~~~~~~~aiLfaV~gG~~sEGIDf~g~ 672 (690)
++. .--+|.|+ ..--||+|+|+-
T Consensus 422 r~G---e~nVLVaT--SVgEEGLDIp~v 444 (542)
T COG1111 422 RKG---EYNVLVAT--SVGEEGLDIPEV 444 (542)
T ss_pred hcC---CceEEEEc--ccccccCCCCcc
Confidence 997 67899988 667899999973
No 155
>PRK14938 Ser-tRNA(Thr) hydrolase; Provisional
Probab=62.29 E-value=11 Score=40.96 Aligned_cols=81 Identities=11% Similarity=0.067 Sum_probs=57.1
Q ss_pred ceeeeeHHHHHHHHHhhhhc---cCCcccCCceeEEEEeCCccchHHHHhHhhhhhcCC-cccCCcccccHHHHHhhhhh
Q psy1221 138 CREDIGVERLFSIIENRNAE---QGVKVKTTSTQVYVASAQKNLVEPRMQLCHELWGGE-KTQEKPKLSGLQSFLKGVQE 213 (690)
Q Consensus 138 ~g~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~v~v~~~~~~~~~~~~~l~~~L~~~~-i~~~~~~~~~Lk~~lk~~~k 213 (690)
----+.+||++-++-..... ....++-.+.+|+|++.++.....++++++.||+.+ .+..+....++++.++.+++
T Consensus 243 ~~~~~~~~r~~~~~L~~a~~e~~~~LPpwLAP~qV~IIpl~eel~e~AlkLA~eLR~aGIrVeiDl~srSLgKQiK~AdK 322 (387)
T PRK14938 243 SRTYVDVGLLVYYFLLESIRKQPPTLPDWLNPIQVRILPVKKDFLDFSIQVAERLRKEGIRVNVDDLDDSLGNKIRRAGT 322 (387)
T ss_pred CEEEEEecHHHHHHHHHhhhHHhCcCCCccCcceEEEEEeChHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHH
Confidence 33567889988654221111 112344567899999998877789999999999865 44445667899999999998
Q ss_pred cCCCC
Q psy1221 214 NNPNL 218 (690)
Q Consensus 214 l~~~~ 218 (690)
.+...
T Consensus 323 ~GaPf 327 (387)
T PRK14938 323 EWIPF 327 (387)
T ss_pred cCCCE
Confidence 87653
No 156
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=62.26 E-value=25 Score=42.58 Aligned_cols=91 Identities=11% Similarity=0.250 Sum_probs=56.7
Q ss_pred HHHHHhccc---EEEEecccCCChhhhHHhhccCCCCCCCceEeeecCCccCCCCeeEEEeecCCCCceeEEee-cccCC
Q psy1221 285 FTDIVQDAR---SIIVAGGTMEPVSEFKDQLFGSLGVPESRIHHFSCGHVIPKENILPLILCSGPTNRKFDLTF-ENRTK 360 (690)
Q Consensus 285 l~~~~~~~~---svIl~SGTL~P~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~y-~~R~~ 360 (690)
+++++..-| -+|+|||||.+ +-|...+ + ...++. ++ ...+ +++..| .....
T Consensus 185 lk~~~~~rr~DLKiIimSATld~-~rfs~~f----~--~apvi~--i~-----GR~f-----------PVei~Y~~~~~~ 239 (845)
T COG1643 185 LKDLLARRRDDLKLIIMSATLDA-ERFSAYF----G--NAPVIE--IE-----GRTY-----------PVEIRYLPEAEA 239 (845)
T ss_pred HHHHHhhcCCCceEEEEecccCH-HHHHHHc----C--CCCEEE--ec-----CCcc-----------ceEEEecCCCCc
Confidence 344454444 59999999988 3444433 2 111111 11 1111 345556 23322
Q ss_pred hH-HHHHHHHHHHHHHhccCCeEEEEcCccchHHHHHhhcC
Q psy1221 361 GD-TLKEIAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYMP 400 (690)
Q Consensus 361 ~~-~~~~l~~~i~~~~~~~pgg~lvFFpSY~~l~~v~~~~~ 400 (690)
+. ..+.+...+......-+|.+|||+|-=+=.+.+.+++.
T Consensus 240 d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~ 280 (845)
T COG1643 240 DYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLE 280 (845)
T ss_pred chhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHH
Confidence 33 56788888888888889999999999888887777764
No 157
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=62.24 E-value=2.2e+02 Score=32.73 Aligned_cols=87 Identities=11% Similarity=0.164 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHhhhcccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCC-CchhHHHHHHHhhhcccC
Q psy1221 572 DTLKEIAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPK-KTSEVDKVLSDYGTSVEK 650 (690)
Q Consensus 572 ~~~~~l~~~I~~l~~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~-~~~~~~~~l~~f~~~~~~ 650 (690)
.+++.+...|...+. ....+||-.-...+.+.+.+++.+.++- .-++-+. +.-++-+++...+..
T Consensus 430 ~QvdDL~~EI~~r~~-~~eRvLVTtLTKkmAEdLT~Yl~e~gik----------v~YlHSdidTlER~eIirdLR~G--- 495 (663)
T COG0556 430 GQVDDLLSEIRKRVA-KNERVLVTTLTKKMAEDLTEYLKELGIK----------VRYLHSDIDTLERVEIIRDLRLG--- 495 (663)
T ss_pred CcHHHHHHHHHHHHh-cCCeEEEEeehHHHHHHHHHHHHhcCce----------EEeeeccchHHHHHHHHHHHhcC---
Confidence 456666666666553 4588999999999999999999987652 2333322 234788899988875
Q ss_pred CceEEEEeeCcccccccccCCCcc
Q psy1221 651 GGALMLSVIGGKLSEGLNFSDDLG 674 (690)
Q Consensus 651 ~~aiLfaV~gG~~sEGIDf~g~~~ 674 (690)
.=-||.|+ .=+-||+|+|.-.+
T Consensus 496 ~~DvLVGI--NLLREGLDiPEVsL 517 (663)
T COG0556 496 EFDVLVGI--NLLREGLDLPEVSL 517 (663)
T ss_pred CccEEEee--hhhhccCCCcceeE
Confidence 45789999 77999999997443
No 158
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=59.88 E-value=54 Score=38.05 Aligned_cols=139 Identities=14% Similarity=0.222 Sum_probs=89.5
Q ss_pred eEEEeCCCCCch--hhHHHHhhccCCCCCCceEEEEeCCCccCCCeeEEEeecCCCCcceeeeccccCChHHHHHHHHHH
Q psy1221 504 SIIVAGGTMEPV--SEFKDQLFGSLGVPESRIHHFSCGHVIPKENILPLILCSGPTNRKFDLTFENRTKGDTLKEIAMTI 581 (690)
Q Consensus 504 svil~SgTLsP~--~~f~~~l~~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~I 581 (690)
.++...||=+|. ++....| ++.... .+ -+-|+..|+..-+++.. +...++. .|
T Consensus 168 p~~AlTATA~~~v~~DI~~~L----~l~~~~--~~--~~sfdRpNi~~~v~~~~----------------~~~~q~~-fi 222 (590)
T COG0514 168 PVLALTATATPRVRDDIREQL----GLQDAN--IF--RGSFDRPNLALKVVEKG----------------EPSDQLA-FL 222 (590)
T ss_pred CEEEEeCCCChHHHHHHHHHh----cCCCcc--eE--EecCCCchhhhhhhhcc----------------cHHHHHH-HH
Confidence 567777887663 3333333 554321 11 22356566544443211 1233344 55
Q ss_pred HHhhhcccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCc-hhHHHHHHHhhhcccCCceEEEEeeC
Q psy1221 582 TNLCTIVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKT-SEVDKVLSDYGTSVEKGGALMLSVIG 660 (690)
Q Consensus 582 ~~l~~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~-~~~~~~l~~f~~~~~~~~aiLfaV~g 660 (690)
.+......+..+|++.|...-+.+.+.+.+.++. ..+.-.+.. .+++..-++|... +..|+.|+.
T Consensus 223 ~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~----------a~~YHaGl~~~eR~~~q~~f~~~---~~~iiVAT~- 288 (590)
T COG0514 223 ATVLPQLSKSGIIYCLTRKKVEELAEWLRKNGIS----------AGAYHAGLSNEERERVQQAFLND---EIKVMVATN- 288 (590)
T ss_pred HhhccccCCCeEEEEeeHHhHHHHHHHHHHCCCc----------eEEecCCCCHHHHHHHHHHHhcC---CCcEEEEec-
Confidence 5544455566799999999999999999976542 334444443 3788888889876 788998884
Q ss_pred cccccccccCCCcceEEEEEcCCC
Q psy1221 661 GKLSEGLNFSDDLGRCVVVMCNSN 684 (690)
Q Consensus 661 G~~sEGIDf~g~~~r~ViivgLPf 684 (690)
-|.=|||-|| .|-||=..+|-
T Consensus 289 -AFGMGIdKpd--VRfViH~~lP~ 309 (590)
T COG0514 289 -AFGMGIDKPD--VRFVIHYDLPG 309 (590)
T ss_pred -cccCccCCCC--ceEEEEecCCC
Confidence 4999999998 78888888883
No 159
>KOG0338|consensus
Probab=59.73 E-value=89 Score=35.43 Aligned_cols=79 Identities=8% Similarity=0.074 Sum_probs=49.9
Q ss_pred cCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCchhHHHHHHHhhhcccCCceEEEEeeCcccccccc
Q psy1221 589 PKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKTSEVDKVLSDYGTSVEKGGALMLSVIGGKLSEGLN 668 (690)
Q Consensus 589 ~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~~~~~~~l~~f~~~~~~~~aiLfaV~gG~~sEGID 668 (690)
..+++||+-+....++..=.+--.++. ...| ...+- ..++-+.|++|+.. .=-+|+|+ ...|.|+|
T Consensus 426 ~~~~ivFv~tKk~AHRl~IllGLlgl~--agEl--HGsLt-----Q~QRlesL~kFk~~---eidvLiaT--DvAsRGLD 491 (691)
T KOG0338|consen 426 QDRTIVFVRTKKQAHRLRILLGLLGLK--AGEL--HGSLT-----QEQRLESLEKFKKE---EIDVLIAT--DVASRGLD 491 (691)
T ss_pred ccceEEEEehHHHHHHHHHHHHHhhch--hhhh--ccccc-----HHHHHHHHHHHHhc---cCCEEEEe--chhhccCC
Confidence 689999999999887765433322211 0001 01111 12566779999986 56788888 99999999
Q ss_pred cCCCcceEEEEEcCC
Q psy1221 669 FSDDLGRCVVVMCNS 683 (690)
Q Consensus 669 f~g~~~r~ViivgLP 683 (690)
+.| ...||=.-.|
T Consensus 492 I~g--V~tVINy~mP 504 (691)
T KOG0338|consen 492 IEG--VQTVINYAMP 504 (691)
T ss_pred ccc--eeEEEeccCc
Confidence 998 4455543333
No 160
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=57.21 E-value=44 Score=36.36 Aligned_cols=39 Identities=15% Similarity=0.197 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHHHHhccC-CeEEEEcCccchHHHHHhhc
Q psy1221 361 GDTLKEIAMTITNLCTIVP-KGMVCFFPSYDYEAIVYNYM 399 (690)
Q Consensus 361 ~~~~~~l~~~i~~~~~~~p-gg~lvFFpSY~~l~~v~~~~ 399 (690)
.+.+..+++.+.+..+..+ +.+|||+++-.-.+.++..+
T Consensus 253 ~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L 292 (357)
T TIGR03158 253 EEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLL 292 (357)
T ss_pred HHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHH
Confidence 3446667777766665444 57999999999999998876
No 161
>KOG0920|consensus
Probab=55.77 E-value=22 Score=43.19 Aligned_cols=39 Identities=13% Similarity=0.159 Sum_probs=29.1
Q ss_pred HHHHHHHHHhhhc-ccCcEEEEeccHHHHHHHHHHHHhcC
Q psy1221 575 KEIAMTITNLCTI-VPKGMVCFFPSYDYEAIVYNYMRDNH 613 (690)
Q Consensus 575 ~~l~~~I~~l~~~-~~gg~lVfF~Sy~~l~~v~~~~~~~~ 613 (690)
.-+.+.|..+++. .+|.+|||.|.|+.+.++++.+....
T Consensus 398 ~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~ 437 (924)
T KOG0920|consen 398 DLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNL 437 (924)
T ss_pred HHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhcc
Confidence 3344445555544 47999999999999999999998543
No 162
>PRK06462 asparagine synthetase A; Reviewed
Probab=54.64 E-value=15 Score=39.60 Aligned_cols=63 Identities=29% Similarity=0.387 Sum_probs=38.7
Q ss_pred EEEEEEcCCCcceEeecc----chhhhhhhcCCCCCCCCccchhhhhhhhcccc---c-ccCcceeeeeHHHHHHHHHhh
Q psy1221 83 IYEAVLKDQAVGSVAGGG----RYDNLVGMFDPKNKTTPCVAAKLLHEVQGLLE---T-SCRSCREDIGVERLFSIIENR 154 (690)
Q Consensus 83 vFe~~~~~~~~~~i~~GG----RYD~L~~~f~~~~~~~~~~g~~~~~~~~~~~~---~-~~~~~g~~~~~~~l~~~~~~~ 154 (690)
-|+.+.+++ .+.|++|| ||+.|.++....+. -|.. ....++ - .++..||+||+|||+.++-..
T Consensus 247 rFdL~~~~g-~gEl~~g~er~~~~~~l~~~~~~~g~-~~~~-------~~~yl~a~~~G~pp~~G~glGidRLvm~~~g~ 317 (335)
T PRK06462 247 NYDLLLPEG-YGEAVSGGEREYEYEEIVERIREHGV-DPEK-------YKWYLEMAKEGPLPSAGFGIGVERLTRYICGL 317 (335)
T ss_pred EEEEEeeCC-CcEEeeeEEEecCHHHHHHHHHHcCC-ChHH-------HHHHHHHHHCCCCCCCeEEEcHHHHHHHHcCC
Confidence 799999753 45888888 78888776632111 1110 111111 1 245567999999999887653
No 163
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=54.40 E-value=15 Score=41.62 Aligned_cols=80 Identities=11% Similarity=0.152 Sum_probs=53.6
Q ss_pred eeeeeH-HHHHHHHHhh-hhccCC--cccCCceeEEEEeC--C----ccchHHHHhHhhhhhcCC-cccCCcccccHHHH
Q psy1221 139 REDIGV-ERLFSIIENR-NAEQGV--KVKTTSTQVYVASA--Q----KNLVEPRMQLCHELWGGE-KTQEKPKLSGLQSF 207 (690)
Q Consensus 139 g~~~~~-~~l~~~~~~~-~~~~~~--~~~~~~~~v~v~~~--~----~~~~~~~~~l~~~L~~~~-i~~~~~~~~~Lk~~ 207 (690)
-+++|+ +|++.++-.. ....+. ..+..+.+|+|++. + +...+.+.+|++.|+..+ .+..+....++...
T Consensus 251 ~~s~Gi~eRli~~lie~~~d~~gl~~P~~iaP~qV~Iipi~~~~~~~~~~~~~A~~l~~~Lr~~girv~lD~r~~s~gkk 330 (472)
T TIGR00408 251 QTSYGISTRVIGALIAIHSDEKGLVLPPRVAPIQVVIIPIIFKKKENEKVMEAAREVRSRLKKAGFRVHIDDRDNRPGRK 330 (472)
T ss_pred EccccHHHHHHHHHHHHhCCCCceeeChhhCcceEEEEEccCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHH
Confidence 367777 9999887321 111121 22345689999986 3 235678889999999854 44445555699999
Q ss_pred HhhhhhcCCCC
Q psy1221 208 LKGVQENNPNL 218 (690)
Q Consensus 208 lk~~~kl~~~~ 218 (690)
++.+++.+...
T Consensus 331 ~k~Ae~~GvP~ 341 (472)
T TIGR00408 331 FYQWEIKGIPL 341 (472)
T ss_pred HHHHHHCCCCE
Confidence 99998887644
No 164
>PF15640 Tox-MPTase4: Metallopeptidase toxin 4
Probab=53.29 E-value=21 Score=32.37 Aligned_cols=37 Identities=30% Similarity=0.292 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHhCCCceEEEecC-------CCCCCCCcceeE
Q psy1221 45 EGLEAIKLLFHYCQIYGLKDTIVFDLS-------LARGLDYYTGVI 83 (690)
Q Consensus 45 ~~l~~l~~~~~~l~~~g~~~~i~~d~~-------~~r~~~YYtG~v 83 (690)
..+.+++.+-+.+...||+ +.+|-. ...|+|||||.|
T Consensus 19 ~s~~d~k~~kk~m~~~gIk--V~Idkk~kilP~n~aagFd~~tg~I 62 (132)
T PF15640_consen 19 MSVKDIKNFKKEMGKRGIK--VKIDKKDKILPENKAAGFDPETGEI 62 (132)
T ss_pred eeHHHHHHHHHHHHhCCcE--EEECCccCCCCccccccCCCCCCcE
Confidence 3467888888899999997 766654 667999999976
No 165
>KOG0340|consensus
Probab=52.92 E-value=1.5e+02 Score=32.09 Aligned_cols=88 Identities=14% Similarity=0.130 Sum_probs=51.2
Q ss_pred HHHHhhhcccCcEEEEeccH-HHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCch-hHHHHHHHhhhcccCCceEEEE
Q psy1221 580 TITNLCTIVPKGMVCFFPSY-DYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKTS-EVDKVLSDYGTSVEKGGALMLS 657 (690)
Q Consensus 580 ~I~~l~~~~~gg~lVfF~Sy-~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~~-~~~~~l~~f~~~~~~~~aiLfa 657 (690)
.+.+..+..+.+.++.|.+- ..-+.++.-++... -..+.+-+.+.. ++-..|.+|+.. .--||+|
T Consensus 244 ~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le----------~r~~~lHs~m~Q~eR~~aLsrFrs~---~~~ilia 310 (442)
T KOG0340|consen 244 HLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLE----------VRVVSLHSQMPQKERLAALSRFRSN---AARILIA 310 (442)
T ss_pred HHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhc----------eeeeehhhcchHHHHHHHHHHHhhc---CccEEEE
Confidence 34444444344444555554 44444443333221 123444444432 677789999986 4678888
Q ss_pred eeCcccccccccCCCcceEEEEEcCCC
Q psy1221 658 VIGGKLSEGLNFSDDLGRCVVVMCNSN 684 (690)
Q Consensus 658 V~gG~~sEGIDf~g~~~r~ViivgLPf 684 (690)
+ ...|.|+|+|- ...||=--+|-
T Consensus 311 T--DVAsRGLDIP~--V~LVvN~diPr 333 (442)
T KOG0340|consen 311 T--DVASRGLDIPT--VELVVNHDIPR 333 (442)
T ss_pred e--chhhcCCCCCc--eeEEEecCCCC
Confidence 8 99999999995 45566555553
No 166
>PLN02837 threonine-tRNA ligase
Probab=52.02 E-value=22 Score=41.86 Aligned_cols=73 Identities=14% Similarity=0.149 Sum_probs=52.9
Q ss_pred eHHHHHHHHHhhhhccCCcccCCceeEEEEeCCccchHHHHhHhhhhhcCCc-ccCCcccccHHHHHhhhhhcCCC
Q psy1221 143 GVERLFSIIENRNAEQGVKVKTTSTQVYVASAQKNLVEPRMQLCHELWGGEK-TQEKPKLSGLQSFLKGVQENNPN 217 (690)
Q Consensus 143 ~~~~l~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~l~~~L~~~~i-~~~~~~~~~Lk~~lk~~~kl~~~ 217 (690)
++||++.+|....... ...+..+.+|+|++.++.....++++++.||+.+. ++. ....++.+.++.+++.+..
T Consensus 494 ~~eRlia~Lie~~~g~-~P~~laP~qV~IIpi~~~~~~~A~~Ia~~Lr~~GirVev-~~~~slgkkir~A~~~gip 567 (614)
T PLN02837 494 SLERFFGVLIEHYAGD-FPLWLAPVQARVLPVTDNELEYCKEVVAKLKAKGIRAEV-CHGERLPKLIRNAETQKIP 567 (614)
T ss_pred CHHHHHHHHHHHcCCC-CCCCCCCccEEEEEeChHHHHHHHHHHHHHHHCCCEEEE-eCCCCHHHHHHHHHHcCCC
Confidence 6999998776531111 11345678999999988888899999999998644 333 3356899999988877654
No 167
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism]
Probab=49.26 E-value=2.1 Score=46.80 Aligned_cols=63 Identities=29% Similarity=0.490 Sum_probs=48.8
Q ss_pred ceEEEecCCCCCCCCcceeEEEEEEcCCCcceEeeccchhhhhhhcCCCCCCCCccchhhhhhhhcccccccCcceeeee
Q psy1221 64 DTIVFDLSLARGLDYYTGVIYEAVLKDQAVGSVAGGGRYDNLVGMFDPKNKTTPCVAAKLLHEVQGLLETSCRSCREDIG 143 (690)
Q Consensus 64 ~~i~~d~~~~r~~~YYtG~vFe~~~~~~~~~~i~~GGRYD~L~~~f~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~ 143 (690)
.+...|..+.+.++||+|-+||..... ...+|||||.+...++.. ... .+|||++.
T Consensus 322 ~~~~~~~~f~~~~~~~~~~~~e~~~~~----r~~g~~~~~~l~~g~~~~-~~~-------------------~~~~~~~~ 377 (390)
T COG3705 322 EERRYAALFGRELDYYTGAAFEAAQAL----RLAGGGRYDRLLTGLGAS-EEI-------------------PGVGFSLW 377 (390)
T ss_pred ccchhhhccCccchhhHHHHHHHHHHh----cccCCeEEEecccccchH-hhh-------------------cccceeEe
Confidence 457789999999999999999977644 378899999998887742 122 35779999
Q ss_pred HHHHHHH
Q psy1221 144 VERLFSI 150 (690)
Q Consensus 144 ~~~l~~~ 150 (690)
++|+...
T Consensus 378 ~~~~~~~ 384 (390)
T COG3705 378 LDRGVAV 384 (390)
T ss_pred eccccee
Confidence 9987543
No 168
>KOG0925|consensus
Probab=48.74 E-value=1.2e+02 Score=34.20 Aligned_cols=83 Identities=11% Similarity=0.158 Sum_probs=56.0
Q ss_pred ceEEEeCCCCCchhhHHHHhhccCCCCCCceEEEEeCCCccCCCeeEEEeecCCCCcceeeeccccCChHHHHHHHHHHH
Q psy1221 503 RSIIVAGGTMEPVSEFKDQLFGSLGVPESRIHHFSCGHVIPKENILPLILCSGPTNRKFDLTFENRTKGDTLKEIAMTIT 582 (690)
Q Consensus 503 ~svil~SgTLsP~~~f~~~l~~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~I~ 582 (690)
-.+|.+|+|+.- +-|+.++++ .++..+...||. -+++. .--..+++++..+.+.
T Consensus 192 Lk~vvmSatl~a-~Kfq~yf~n------~Pll~vpg~~Pv-----Ei~Yt--------------~e~erDylEaairtV~ 245 (699)
T KOG0925|consen 192 LKLVVMSATLDA-EKFQRYFGN------APLLAVPGTHPV-----EIFYT--------------PEPERDYLEAAIRTVL 245 (699)
T ss_pred ceEEEeecccch-HHHHHHhCC------CCeeecCCCCce-----EEEec--------------CCCChhHHHHHHHHHH
Confidence 468999999954 567677622 233333333332 11222 2123578888888888
Q ss_pred Hhhhc-ccCcEEEEeccHHHHHHHHHHHHh
Q psy1221 583 NLCTI-VPKGMVCFFPSYDYEAIVYNYMRD 611 (690)
Q Consensus 583 ~l~~~-~~gg~lVfF~Sy~~l~~v~~~~~~ 611 (690)
+++-. -||-+|||.|+=+.++.+.+.+..
T Consensus 246 qih~~ee~GDilvFLtgeeeIe~aC~~i~r 275 (699)
T KOG0925|consen 246 QIHMCEEPGDILVFLTGEEEIEDACRKISR 275 (699)
T ss_pred HHHhccCCCCEEEEecCHHHHHHHHHHHHH
Confidence 88753 488999999999999999888874
No 169
>KOG2340|consensus
Probab=47.28 E-value=48 Score=37.57 Aligned_cols=96 Identities=18% Similarity=0.200 Sum_probs=67.6
Q ss_pred HHHHHHHHHhhhcccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCchhHHHHHHHhhhcccCCceE
Q psy1221 575 KEIAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKTSEVDKVLSDYGTSVEKGGAL 654 (690)
Q Consensus 575 ~~l~~~I~~l~~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~~~~~~~l~~f~~~~~~~~ai 654 (690)
=-+...+-.+...+..|+||+-|||..-=++.+++++..+. |..|. |-...+..+..-+-|... +..+
T Consensus 538 yFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~--F~~i~-------EYssk~~vsRAR~lF~qg---r~~v 605 (698)
T KOG2340|consen 538 YFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEIS--FVMIN-------EYSSKSKVSRARELFFQG---RKSV 605 (698)
T ss_pred HHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcc--hHHHh-------hhhhHhhhhHHHHHHHhc---CceE
Confidence 33455566777778899999999999999999999976532 12222 222222344555566665 6788
Q ss_pred EEEeeCcccccccccCCCcceEEEEEcCCC
Q psy1221 655 MLSVIGGKLSEGLNFSDDLGRCVVVMCNSN 684 (690)
Q Consensus 655 LfaV~gG~~sEGIDf~g~~~r~ViivgLPf 684 (690)
|+-+-|-.|-.--++.| .+.||..++|=
T Consensus 606 lLyTER~hffrR~~ikG--Vk~vVfYqpP~ 633 (698)
T KOG2340|consen 606 LLYTERAHFFRRYHIKG--VKNVVFYQPPN 633 (698)
T ss_pred EEEehhhhhhhhheecc--eeeEEEecCCC
Confidence 88887777777777776 79999999883
No 170
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=46.90 E-value=2.2e+02 Score=32.95 Aligned_cols=135 Identities=13% Similarity=0.108 Sum_probs=77.6
Q ss_pred ceEEEeCCCCCchhhHHHHhhccCCCCCCceEEEEeCCCccCCCeeEEEeecCCCCcceeeeccccCChHHHHHHHHHHH
Q psy1221 503 RSIIVAGGTMEPVSEFKDQLFGSLGVPESRIHHFSCGHVIPKENILPLILCSGPTNRKFDLTFENRTKGDTLKEIAMTIT 582 (690)
Q Consensus 503 ~svil~SgTLsP~~~f~~~l~~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~I~ 582 (690)
-..|..|||......++..|+.++ ..-...|+|-+.-.++.- . ..+....+..+++.=.
T Consensus 373 AQ~i~LSATVgNp~elA~~l~a~l--------V~y~~RPVplErHlvf~~--~-----------e~eK~~ii~~L~k~E~ 431 (830)
T COG1202 373 AQFIYLSATVGNPEELAKKLGAKL--------VLYDERPVPLERHLVFAR--N-----------ESEKWDIIARLVKREF 431 (830)
T ss_pred CeEEEEEeecCChHHHHHHhCCee--------EeecCCCCChhHeeeeec--C-----------chHHHHHHHHHHHHHH
Confidence 468999999988888988883321 233456677554433321 1 0011123333333221
Q ss_pred Hh--hhcccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCc-hhHHHHHHHhhhcccCCceEEEEee
Q psy1221 583 NL--CTIVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKT-SEVDKVLSDYGTSVEKGGALMLSVI 659 (690)
Q Consensus 583 ~l--~~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~-~~~~~~l~~f~~~~~~~~aiLfaV~ 659 (690)
.. ..--.|.++||.-|..--+.+...+...++. ..+ + -.+.+ .++..+=..|... .=++...+
T Consensus 432 ~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~--------a~p-Y-HaGL~y~eRk~vE~~F~~q---~l~~VVTT- 497 (830)
T COG1202 432 STESSKGYRGQTIVFTYSRRRCHELADALTGKGLK--------AAP-Y-HAGLPYKERKSVERAFAAQ---ELAAVVTT- 497 (830)
T ss_pred hhhhccCcCCceEEEecchhhHHHHHHHhhcCCcc--------ccc-c-cCCCcHHHHHHHHHHHhcC---CcceEeeh-
Confidence 11 1123688999999999999999988865432 001 1 11111 2555555667654 33444444
Q ss_pred CcccccccccCCCc
Q psy1221 660 GGKLSEGLNFSDDL 673 (690)
Q Consensus 660 gG~~sEGIDf~g~~ 673 (690)
..++-|||||-.+
T Consensus 498 -AAL~AGVDFPASQ 510 (830)
T COG1202 498 -AALAAGVDFPASQ 510 (830)
T ss_pred -hhhhcCCCCchHH
Confidence 6699999999764
No 171
>KOG0351|consensus
Probab=46.78 E-value=3.3e+02 Score=33.76 Aligned_cols=140 Identities=12% Similarity=0.077 Sum_probs=91.0
Q ss_pred ceEEEeCCCCCch--hhHHHHhhccCCCCCCceEEEEeCCCccCCCeeEEEeecCCCCcceeeeccccCChHHHHHHHHH
Q psy1221 503 RSIIVAGGTMEPV--SEFKDQLFGSLGVPESRIHHFSCGHVIPKENILPLILCSGPTNRKFDLTFENRTKGDTLKEIAMT 580 (690)
Q Consensus 503 ~svil~SgTLsP~--~~f~~~l~~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ 580 (690)
..+|-..||.++. +...+.| |+.... ...+-|+..|+..-|.++.. +. ....+...
T Consensus 421 vP~iALTATAT~~v~~DIi~~L----~l~~~~----~~~~sfnR~NL~yeV~~k~~-----------~~---~~~~~~~~ 478 (941)
T KOG0351|consen 421 VPFIALTATATERVREDVIRSL----GLRNPE----LFKSSFNRPNLKYEVSPKTD-----------KD---ALLDILEE 478 (941)
T ss_pred CCeEEeehhccHHHHHHHHHHh----CCCCcc----eecccCCCCCceEEEEeccC-----------cc---chHHHHHH
Confidence 5788888998764 3444555 664322 34556888888877775541 11 11112222
Q ss_pred HHHhhhcccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCc-hhHHHHHHHhhhcccCCceEEEEee
Q psy1221 581 ITNLCTIVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKT-SEVDKVLSDYGTSVEKGGALMLSVI 659 (690)
Q Consensus 581 I~~l~~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~-~~~~~~l~~f~~~~~~~~aiLfaV~ 659 (690)
+.... -.+-.+|++.|...-+++...++..+.. .-+.-.+.. .++..+-+.|... +--|..|++
T Consensus 479 ~~~~~--~~~s~IIYC~sr~~ce~vs~~L~~~~~~----------a~~YHAGl~~~~R~~Vq~~w~~~---~~~VivATV 543 (941)
T KOG0351|consen 479 SKLRH--PDQSGIIYCLSRKECEQVSAVLRSLGKS----------AAFYHAGLPPKERETVQKAWMSD---KIRVIVATV 543 (941)
T ss_pred hhhcC--CCCCeEEEeCCcchHHHHHHHHHHhchh----------hHhhhcCCCHHHHHHHHHHHhcC---CCeEEEEEe
Confidence 22221 2345789999999999999999976532 112223322 3778888888876 556777776
Q ss_pred CcccccccccCCCcceEEEEEcCC
Q psy1221 660 GGKLSEGLNFSDDLGRCVVVMCNS 683 (690)
Q Consensus 660 gG~~sEGIDf~g~~~r~ViivgLP 683 (690)
- |.=|||.+| .|.||=.+||
T Consensus 544 A--FGMGIdK~D--VR~ViH~~lP 563 (941)
T KOG0351|consen 544 A--FGMGIDKPD--VRFVIHYSLP 563 (941)
T ss_pred e--ccCCCCCCc--eeEEEECCCc
Confidence 6 999999998 8999988888
No 172
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=46.49 E-value=5.1e+02 Score=31.60 Aligned_cols=146 Identities=12% Similarity=0.066 Sum_probs=82.4
Q ss_pred eEEEeCCCCCchhhHHHHhhccCCCCCCceEEEEeCCCccCCCeeEEEeecCCCCcceeeeccccCChHHHHHHHHHHHH
Q psy1221 504 SIIVAGGTMEPVSEFKDQLFGSLGVPESRIHHFSCGHVIPKENILPLILCSGPTNRKFDLTFENRTKGDTLKEIAMTITN 583 (690)
Q Consensus 504 svil~SgTLsP~~~f~~~l~~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~I~~ 583 (690)
.-|-.|||..|.+..+.+|....+ .-.++... . ..+.-+-++.-.++. .+.. .....+.+.|.+
T Consensus 185 qRIGLSATV~~~~~varfL~g~~~--~~~Iv~~~----~-~k~~~i~v~~p~~~~-----~~~~----~~~~~~~~~i~~ 248 (814)
T COG1201 185 QRIGLSATVGPPEEVAKFLVGFGD--PCEIVDVS----A-AKKLEIKVISPVEDL-----IYDE----ELWAALYERIAE 248 (814)
T ss_pred EEEeehhccCCHHHHHHHhcCCCC--ceEEEEcc----c-CCcceEEEEecCCcc-----cccc----chhHHHHHHHHH
Confidence 457889999999998888843210 11111111 1 122222222111111 0111 223334555566
Q ss_pred hhhcccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCC-c-hhHHHHHHHhhhcccCCceEEEEeeCc
Q psy1221 584 LCTIVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKK-T-SEVDKVLSDYGTSVEKGGALMLSVIGG 661 (690)
Q Consensus 584 l~~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~-~-~~~~~~l~~f~~~~~~~~aiLfaV~gG 661 (690)
+++... .+|||-.+...-+.+...+++... +++..--+. + +.+...=++|++. + +=.-||..
T Consensus 249 ~v~~~~-ttLIF~NTR~~aE~l~~~L~~~~~----------~~i~~HHgSlSre~R~~vE~~lk~G---~--lravV~TS 312 (814)
T COG1201 249 LVKKHR-TTLIFTNTRSGAERLAFRLKKLGP----------DIIEVHHGSLSRELRLEVEERLKEG---E--LKAVVATS 312 (814)
T ss_pred HHhhcC-cEEEEEeChHHHHHHHHHHHHhcC----------CceeeecccccHHHHHHHHHHHhcC---C--ceEEEEcc
Confidence 665544 899999999999999998886431 234433321 1 2556666677764 2 33334558
Q ss_pred ccccccccCCCcceEEEEEcCC
Q psy1221 662 KLSEGLNFSDDLGRCVVVMCNS 683 (690)
Q Consensus 662 ~~sEGIDf~g~~~r~ViivgLP 683 (690)
++.=|||.-+ ...||-+|=|
T Consensus 313 SLELGIDiG~--vdlVIq~~SP 332 (814)
T COG1201 313 SLELGIDIGD--IDLVIQLGSP 332 (814)
T ss_pred chhhccccCC--ceEEEEeCCc
Confidence 8999999976 5667766655
No 173
>KOG4284|consensus
Probab=46.05 E-value=86 Score=36.57 Aligned_cols=93 Identities=10% Similarity=0.128 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHhhhcccC-cEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCch-hHHHHHHHhhhccc
Q psy1221 572 DTLKEIAMTITNLCTIVPK-GMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKTS-EVDKVLSDYGTSVE 649 (690)
Q Consensus 572 ~~~~~l~~~I~~l~~~~~g-g~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~~-~~~~~l~~f~~~~~ 649 (690)
+-++.--+.|..+.+.+|- -.|||..+..-.+.+..+|+..|+. .-|+-+.+.. ++...++.++.-
T Consensus 254 eemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d----------~~~ISgaM~Q~~Rl~a~~~lr~f-- 321 (980)
T KOG4284|consen 254 EEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLD----------VTFISGAMSQKDRLLAVDQLRAF-- 321 (980)
T ss_pred HHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCC----------eEEeccccchhHHHHHHHHhhhc--
Confidence 3344455667777777775 5789999999999999999987764 4566555443 667778888764
Q ss_pred CCceEEEEeeCcccccccccCCCcceEEEEEc
Q psy1221 650 KGGALMLSVIGGKLSEGLNFSDDLGRCVVVMC 681 (690)
Q Consensus 650 ~~~aiLfaV~gG~~sEGIDf~g~~~r~Viivg 681 (690)
.--||.++ .=.+.|||-+. .-.||=+-
T Consensus 322 -~~rILVsT--DLtaRGIDa~~--vNLVVNiD 348 (980)
T KOG4284|consen 322 -RVRILVST--DLTARGIDADN--VNLVVNID 348 (980)
T ss_pred -eEEEEEec--chhhccCCccc--cceEEecC
Confidence 45788877 88999999764 34444433
No 174
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=45.79 E-value=1.2e+02 Score=34.25 Aligned_cols=84 Identities=19% Similarity=0.191 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHH-HHhCCCceEEEecCCCCCCCCcceeEEEEEEcCCC---cceEeeccchh-hhhhhcCCCCCCCCccc
Q psy1221 46 GLEAIKLLFHYC-QIYGLKDTIVFDLSLARGLDYYTGVIYEAVLKDQA---VGSVAGGGRYD-NLVGMFDPKNKTTPCVA 120 (690)
Q Consensus 46 ~l~~l~~~~~~l-~~~g~~~~i~~d~~~~r~~~YYtG~vFe~~~~~~~---~~~i~~GGRYD-~L~~~f~~~~~~~~~~g 120 (690)
.+++|+.+++.+ +.+|. .++.|.|+.-|.--|.-++-.|+++.... --.|++.|=|. +.+..+|- +.|..+
T Consensus 244 Sf~DLKgvLe~LLr~LG~-~~vRFRPsekrskyYFPFTEaEVdV~~~k~~gWiEIgG~GmVhPeVL~~~GI---d~PV~A 319 (533)
T TIGR00470 244 SVDDGKAVAEGLLAQFGF-TKFRFRPDEKKSKYYIPETQTEVYAYHPKLGEWIEVATFGVYSPIALAKYNI---DVPVMN 319 (533)
T ss_pred CHHHHHHHHHHHHHHhCC-ceEEeccCcCCCCCcCCCceEEEEEEccCCCceEEEEeccccCHHHHHHcCC---CCceEE
Confidence 456666666554 44686 56999999887777877777888875511 13588888886 66777763 344444
Q ss_pred hhhhhhhhcccccccCcceeeeeHHHHHHHHH
Q psy1221 121 AKLLHEVQGLLETSCRSCREDIGVERLFSIIE 152 (690)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~ 152 (690)
|.||+|||.-+.-
T Consensus 320 -------------------FGIGVERlAMi~y 332 (533)
T TIGR00470 320 -------------------LGLGVERLAMILY 332 (533)
T ss_pred -------------------EEecHHHHHHHHh
Confidence 8999999977644
No 175
>KOG0923|consensus
Probab=45.29 E-value=73 Score=37.20 Aligned_cols=84 Identities=14% Similarity=0.319 Sum_probs=56.4
Q ss_pred ceEEEeCCCCCchhhHHHHhhccCCCCCCceEEEEeCCCccCCCeeEEEeecCCCCcceeeeccccCChHHHHHHHHHHH
Q psy1221 503 RSIIVAGGTMEPVSEFKDQLFGSLGVPESRIHHFSCGHVIPKENILPLILCSGPTNRKFDLTFENRTKGDTLKEIAMTIT 582 (690)
Q Consensus 503 ~svil~SgTLsP~~~f~~~l~~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~I~ 582 (690)
=.++++||||.. +-|..++ ++.++ |.+| ..++ +++.-|...-..+|+++....|.
T Consensus 411 LKllIsSAT~DA-ekFS~fF------DdapI--F~iP-----GRRy-----------PVdi~Yt~~PEAdYldAai~tVl 465 (902)
T KOG0923|consen 411 LKLLISSATMDA-EKFSAFF------DDAPI--FRIP-----GRRY-----------PVDIFYTKAPEADYLDAAIVTVL 465 (902)
T ss_pred ceEEeeccccCH-HHHHHhc------cCCcE--Eecc-----Cccc-----------ceeeecccCCchhHHHHHHhhhe
Confidence 368999999955 6776665 22222 2222 2222 23334555445689998888888
Q ss_pred Hhhhccc-CcEEEEeccHHHHHHHHHHHHh
Q psy1221 583 NLCTIVP-KGMVCFFPSYDYEAIVYNYMRD 611 (690)
Q Consensus 583 ~l~~~~~-gg~lVfF~Sy~~l~~v~~~~~~ 611 (690)
.+....| |-+|||+|--+..+.+.+.+++
T Consensus 466 qIH~tqp~GDILVFltGQeEIEt~~e~l~~ 495 (902)
T KOG0923|consen 466 QIHLTQPLGDILVFLTGQEEIETVKENLKE 495 (902)
T ss_pred eeEeccCCccEEEEeccHHHHHHHHHHHHH
Confidence 8876655 5599999999999988888874
No 176
>KOG0922|consensus
Probab=45.12 E-value=56 Score=38.02 Aligned_cols=49 Identities=8% Similarity=0.247 Sum_probs=37.7
Q ss_pred eEEeecccCChHHHHHHHHHHHHHHhc-cCCeEEEEcCccchHHHHHhhc
Q psy1221 351 FDLTFENRTKGDTLKEIAMTITNLCTI-VPKGMVCFFPSYDYEAIVYNYM 399 (690)
Q Consensus 351 l~~~y~~R~~~~~~~~l~~~i~~~~~~-~pgg~lvFFpSY~~l~~v~~~~ 399 (690)
+..-|.+....+|+++.-..+.+|... -||.+|||.|.=+=.+.+.+.+
T Consensus 229 Vei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l 278 (674)
T KOG0922|consen 229 VEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELL 278 (674)
T ss_pred eeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHH
Confidence 444566667788999888888888766 5689999999987766666655
No 177
>KOG0326|consensus
Probab=43.73 E-value=58 Score=34.63 Aligned_cols=67 Identities=9% Similarity=0.167 Sum_probs=47.5
Q ss_pred CcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCc-hhHHHHHHHhhhcccCCceEEEEeeCcccccccc
Q psy1221 590 KGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKT-SEVDKVLSDYGTSVEKGGALMLSVIGGKLSEGLN 668 (690)
Q Consensus 590 gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~-~~~~~~l~~f~~~~~~~~aiLfaV~gG~~sEGID 668 (690)
.-.++|+.|-.-.+-..+.+.+.++..+| +..++. .++..++..|++. .--.|. |..-|..|||
T Consensus 323 NQsIIFCNS~~rVELLAkKITelGyscyy----------iHakM~Q~hRNrVFHdFr~G---~crnLV--ctDL~TRGID 387 (459)
T KOG0326|consen 323 NQSIIFCNSTNRVELLAKKITELGYSCYY----------IHAKMAQEHRNRVFHDFRNG---KCRNLV--CTDLFTRGID 387 (459)
T ss_pred cceEEEeccchHhHHHHHHHHhccchhhH----------HHHHHHHhhhhhhhhhhhcc---ccceee--ehhhhhcccc
Confidence 45799999999999998888887765332 222222 3678899999874 234454 5599999999
Q ss_pred cCC
Q psy1221 669 FSD 671 (690)
Q Consensus 669 f~g 671 (690)
.+.
T Consensus 388 iqa 390 (459)
T KOG0326|consen 388 IQA 390 (459)
T ss_pred cce
Confidence 874
No 178
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=43.23 E-value=21 Score=30.13 Aligned_cols=52 Identities=10% Similarity=-0.086 Sum_probs=38.6
Q ss_pred eeEEEEeCCc---cchHHHHhHhhhhhcCC-cccCCcccccHHHHHhhhhhcCCCC
Q psy1221 167 TQVYVASAQK---NLVEPRMQLCHELWGGE-KTQEKPKLSGLQSFLKGVQENNPNL 218 (690)
Q Consensus 167 ~~v~v~~~~~---~~~~~~~~l~~~L~~~~-i~~~~~~~~~Lk~~lk~~~kl~~~~ 218 (690)
.+|.|++... .....++.++..||..+ .+..+....++.+.++.+++.+...
T Consensus 2 ~qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~~~~~l~k~i~~a~~~g~~~ 57 (94)
T cd00861 2 FDVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDDRNERPGVKFADADLIGIPY 57 (94)
T ss_pred eEEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEECCCCCcccchhHHHhcCCCE
Confidence 4577777766 45678899999999854 4444555678999999998887653
No 179
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=42.18 E-value=29 Score=37.25 Aligned_cols=79 Identities=18% Similarity=0.187 Sum_probs=46.1
Q ss_pred EEEe-cCCCCCC-CCc------ceeEEEEEEcCCCcceEeecc----chhhhhhhcCCCCCCCCccchhhhhhhhccccc
Q psy1221 66 IVFD-LSLARGL-DYY------TGVIYEAVLKDQAVGSVAGGG----RYDNLVGMFDPKNKTTPCVAAKLLHEVQGLLET 133 (690)
Q Consensus 66 i~~d-~~~~r~~-~YY------tG~vFe~~~~~~~~~~i~~GG----RYD~L~~~f~~~~~~~~~~g~~~~~~~~~~~~~ 133 (690)
+..| |...+.+ ... +---|+++.+++ +.|++|+ +|+.+.++|...+ .+. .++...++-
T Consensus 214 fi~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~G~--~El~~g~~r~~d~~~l~~r~~~~g--~~~------~~~~~yl~a 283 (322)
T cd00776 214 FVTDYPKEIKPFYMKPDDDNPETVESFDLLMPGV--GEIVGGSQRIHDYDELEERIKEHG--LDP------ESFEWYLDL 283 (322)
T ss_pred EEECCccccCCceeeecCCCCCeeEEEEEEcCCC--eEEeeceeecCCHHHHHHHHHHcC--CCh------HHHHHHHHH
Confidence 4456 6566654 221 224789998773 5788887 4677777775422 110 011111111
Q ss_pred ----ccCcceeeeeHHHHHHHHHhh
Q psy1221 134 ----SCRSCREDIGVERLFSIIENR 154 (690)
Q Consensus 134 ----~~~~~g~~~~~~~l~~~~~~~ 154 (690)
.++..||+||+|||+.++-..
T Consensus 284 ~~~G~pp~~G~giGidRL~m~~~g~ 308 (322)
T cd00776 284 RKYGMPPHGGFGLGLERLVMWLLGL 308 (322)
T ss_pred HHCCCCCCceeeEhHHHHHHHHcCC
Confidence 234567999999999887653
No 180
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=41.43 E-value=32 Score=37.05 Aligned_cols=70 Identities=16% Similarity=0.183 Sum_probs=37.9
Q ss_pred eeEEEEEEcCCCcceEeecc----chhhhhhhcCCCCCCCCccchhhhhhhhccccc-ccCcceeeeeHHHHHHHHHhh
Q psy1221 81 GVIYEAVLKDQAVGSVAGGG----RYDNLVGMFDPKNKTTPCVAAKLLHEVQGLLET-SCRSCREDIGVERLFSIIENR 154 (690)
Q Consensus 81 G~vFe~~~~~~~~~~i~~GG----RYD~L~~~f~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~g~~~~~~~l~~~~~~~ 154 (690)
.--|+++.++ ..||+|+ +|+.+..+|...+.. +.......+..-..++. .++-.||+||+|||+.++-..
T Consensus 247 ~~~fdl~~~g---~Ei~~G~~r~~d~~~l~~r~~~~~~~-~~~~~~~~~~yl~~~~~G~pp~~G~glG~eRLvm~l~g~ 321 (335)
T PF00152_consen 247 AERFDLYIPG---GEIANGSQREHDPEELRERFEEQGID-PEEEMPIDEWYLEALKYGMPPHGGFGLGLERLVMLLLGL 321 (335)
T ss_dssp BSEEEEEETT---EEEEEEEEB--SHHHHHHHHHHTTHH-GGGSHHHGHHHHHHHHTT--SEEEEEEEHHHHHHHHHT-
T ss_pred ccceeEEEeC---EEEehHHhhhhHHHHHHHHhhhcccc-cccccchhHhHHHhhhccCcccCcceehHHHHHHHHcCC
Confidence 3579999977 4788886 467777777532110 00000000000001111 234558999999999887654
No 181
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=40.28 E-value=32 Score=38.60 Aligned_cols=62 Identities=23% Similarity=0.292 Sum_probs=37.0
Q ss_pred eEEEEEEcCCCcceEeecc----chhhhhhhcCCCCCCCCccchhhhhhhhccccc----ccCcceeeeeHHHHHHHHHh
Q psy1221 82 VIYEAVLKDQAVGSVAGGG----RYDNLVGMFDPKNKTTPCVAAKLLHEVQGLLET----SCRSCREDIGVERLFSIIEN 153 (690)
Q Consensus 82 ~vFe~~~~~~~~~~i~~GG----RYD~L~~~f~~~~~~~~~~g~~~~~~~~~~~~~----~~~~~g~~~~~~~l~~~~~~ 153 (690)
--|+++.++. .|++|+ +|+.+.+++...+ .+. ......++- .++..||+||+|||+.++-.
T Consensus 350 ~~fdl~~~g~---Ei~~g~~r~~d~~~~~~~~~~~g--~~~------~~~~~yl~a~~~G~pp~~G~giGidRl~m~~~g 418 (437)
T PRK05159 350 KSFDLLFRGL---EITSGGQRIHRYDMLVESIKEKG--LNP------ESFEFYLEAFKYGMPPHGGFGLGLERLTMKLLG 418 (437)
T ss_pred EEEEEEECCE---EEeeCeEEcCCHHHHHHHHHHcC--CCH------HHHHHHHHHHHCCCCCCCeeeEhHHHHHHHHcC
Confidence 4799999772 788887 5777777775321 110 000111111 13445799999999988765
Q ss_pred h
Q psy1221 154 R 154 (690)
Q Consensus 154 ~ 154 (690)
.
T Consensus 419 ~ 419 (437)
T PRK05159 419 L 419 (437)
T ss_pred C
Confidence 3
No 182
>KOG0924|consensus
Probab=39.76 E-value=1e+02 Score=36.23 Aligned_cols=85 Identities=12% Similarity=0.261 Sum_probs=53.8
Q ss_pred cceEEEeCCCCCchhhHHHHhhccCCCCCCceEEEEeCCCccCCCeeEEEeecCCCCcceeeeccccCChHHHHHHHHHH
Q psy1221 502 ARSIIVAGGTMEPVSEFKDQLFGSLGVPESRIHHFSCGHVIPKENILPLILCSGPTNRKFDLTFENRTKGDTLKEIAMTI 581 (690)
Q Consensus 502 ~~svil~SgTLsP~~~f~~~l~~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~I 581 (690)
.-.+|.|||||.. +-|.++++. .+. ..+ -+.-| ++...|..-.-++|.++.....
T Consensus 500 dlKliVtSATm~a-~kf~nfFgn---~p~---f~I-pGRTy-----------------PV~~~~~k~p~eDYVeaavkq~ 554 (1042)
T KOG0924|consen 500 DLKLIVTSATMDA-QKFSNFFGN---CPQ---FTI-PGRTY-----------------PVEIMYTKTPVEDYVEAAVKQA 554 (1042)
T ss_pred cceEEEeeccccH-HHHHHHhCC---Cce---eee-cCCcc-----------------ceEEEeccCchHHHHHHHHhhh
Confidence 3479999999954 677777731 111 110 01111 2333444433468888888777
Q ss_pred HHhhhcc-cCcEEEEeccHHHHHHHHHHHHh
Q psy1221 582 TNLCTIV-PKGMVCFFPSYDYEAIVYNYMRD 611 (690)
Q Consensus 582 ~~l~~~~-~gg~lVfF~Sy~~l~~v~~~~~~ 611 (690)
..+.... +|.+|||.|--+..+.....++.
T Consensus 555 v~Ihl~~~~GdilIfmtGqediE~t~~~i~~ 585 (1042)
T KOG0924|consen 555 VQIHLSGPPGDILIFMTGQEDIECTCDIIKE 585 (1042)
T ss_pred eEeeccCCCCCEEEecCCCcchhHHHHHHHH
Confidence 7776655 48899999988888877776663
No 183
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=39.49 E-value=1.5e+02 Score=35.83 Aligned_cols=72 Identities=13% Similarity=0.227 Sum_probs=47.9
Q ss_pred cCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCch-hHHHHHHHhhhc-ccCCceEEEEeeCcccccc
Q psy1221 589 PKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKTS-EVDKVLSDYGTS-VEKGGALMLSVIGGKLSEG 666 (690)
Q Consensus 589 ~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~~-~~~~~l~~f~~~-~~~~~aiLfaV~gG~~sEG 666 (690)
.+.+||.+.+-.....+|+.++..+. +.+++-++... ++++..++.+.. -++++.|+.|+ =..-=|
T Consensus 440 ~~kvlvI~NTV~~Aie~Y~~Lk~~~~----------~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaT--QVIEag 507 (733)
T COG1203 440 GKKVLVIVNTVDRAIELYEKLKEKGP----------KVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVAT--QVIEAG 507 (733)
T ss_pred CCcEEEEEecHHHHHHHHHHHHhcCC----------CEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEe--eEEEEE
Confidence 46799999999999999999985431 45666666543 455555543321 11267888887 457788
Q ss_pred cccCCC
Q psy1221 667 LNFSDD 672 (690)
Q Consensus 667 IDf~g~ 672 (690)
+|+.=|
T Consensus 508 vDidfd 513 (733)
T COG1203 508 VDIDFD 513 (733)
T ss_pred eccccC
Confidence 998754
No 184
>KOG0920|consensus
Probab=39.21 E-value=25 Score=42.68 Aligned_cols=36 Identities=11% Similarity=0.173 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhc-cCCeEEEEcCccchHHHHHhhcC
Q psy1221 365 KEIAMTITNLCTI-VPKGMVCFFPSYDYEAIVYNYMP 400 (690)
Q Consensus 365 ~~l~~~i~~~~~~-~pgg~lvFFpSY~~l~~v~~~~~ 400 (690)
+-+.+.|..++.. .+|.+|||.|.|+=+.+++..+.
T Consensus 398 ~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~ 434 (924)
T KOG0920|consen 398 DLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLE 434 (924)
T ss_pred HHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhh
Confidence 4444555555554 58999999999999999988773
No 185
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=38.52 E-value=38 Score=37.95 Aligned_cols=77 Identities=18% Similarity=0.243 Sum_probs=41.8
Q ss_pred EEEe-cCCCCCC-CCc--c--e--eEEEEEEcCCCcceEeeccc----hhhhhhhcCCCCCCCCccchhhhhhhhccccc
Q psy1221 66 IVFD-LSLARGL-DYY--T--G--VIYEAVLKDQAVGSVAGGGR----YDNLVGMFDPKNKTTPCVAAKLLHEVQGLLET 133 (690)
Q Consensus 66 i~~d-~~~~r~~-~YY--t--G--~vFe~~~~~~~~~~i~~GGR----YD~L~~~f~~~~~~~~~~g~~~~~~~~~~~~~ 133 (690)
+..| |...+++ ... . + --|+.+.++ ..|++|+. |+.|.+++...+.+ |. ...-.++-
T Consensus 317 fi~d~P~~~~pfy~~~~~~~p~~~~~fdl~~~g---~Ei~~g~~r~~~~~~l~~~~~~~g~~-~~-------~~~~yl~a 385 (428)
T TIGR00458 317 FITDWPTEIRPFYTMPDEDNPEISKSFDLMYRD---LEISSGAQRIHLHDLLVERIKAKGLN-PE-------GFKDYLEA 385 (428)
T ss_pred EEEeCchhcCcccccccCCCCCEEEEEEEEeCC---eEEeeCchhcCCHHHHHHHHHHcCCC-hH-------HHHHHHHH
Confidence 5567 5555554 111 1 3 379999976 37888873 45666665421110 00 00000000
Q ss_pred ----ccCcceeeeeHHHHHHHHHh
Q psy1221 134 ----SCRSCREDIGVERLFSIIEN 153 (690)
Q Consensus 134 ----~~~~~g~~~~~~~l~~~~~~ 153 (690)
.++..||+||+|||+.++-.
T Consensus 386 ~~~G~pP~~G~GiGidRL~m~l~g 409 (428)
T TIGR00458 386 FSYGMPPHAGWGLGAERFVMFLLG 409 (428)
T ss_pred HHCCCCCcCceeecHHHHHHHHcC
Confidence 13445799999999988765
No 186
>PRK08661 prolyl-tRNA synthetase; Provisional
Probab=33.88 E-value=67 Score=36.54 Aligned_cols=78 Identities=17% Similarity=0.167 Sum_probs=53.0
Q ss_pred eeeH-HHHHHHHHh-hhhccCCc--ccCCceeEEEEeC------CccchHHHHhHhhhhhcCC-cccCCc-ccccHHHHH
Q psy1221 141 DIGV-ERLFSIIEN-RNAEQGVK--VKTTSTQVYVASA------QKNLVEPRMQLCHELWGGE-KTQEKP-KLSGLQSFL 208 (690)
Q Consensus 141 ~~~~-~~l~~~~~~-~~~~~~~~--~~~~~~~v~v~~~------~~~~~~~~~~l~~~L~~~~-i~~~~~-~~~~Lk~~l 208 (690)
++|+ +|++.++-. .+-..+.. .+..+.+|+|++. ++.....+.++++.|+..+ .+..+. ...++...+
T Consensus 258 s~G~~~R~i~alie~~~D~~Gl~lP~~iAP~qV~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~GirV~lD~r~~~s~gkK~ 337 (477)
T PRK08661 258 SWGVSTRLIGALIMTHGDDKGLVLPPKIAPIQVVIVPIFKKEEKKEEVLEYAKELAEELKKAGIRVKLDDRSDKTPGWKF 337 (477)
T ss_pred cccHHHHHHHHHHHHhCccCCCccCcccCCCeEEEEEecCCCcCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHH
Confidence 4555 999987654 22222222 2234689999998 4556778899999999964 444444 667899999
Q ss_pred hhhhhcCCCC
Q psy1221 209 KGVQENNPNL 218 (690)
Q Consensus 209 k~~~kl~~~~ 218 (690)
+.+++.+..+
T Consensus 338 ~~ae~~GvP~ 347 (477)
T PRK08661 338 NEWELKGVPL 347 (477)
T ss_pred HHHHHCCCCE
Confidence 9998887644
No 187
>PLN02734 glycyl-tRNA synthetase
Probab=33.29 E-value=63 Score=38.20 Aligned_cols=83 Identities=10% Similarity=0.022 Sum_probs=51.9
Q ss_pred CcceeeeeHHHHHHHHHhhhh------c--cCC--cccCCceeEEEEeCC--ccchHHHHhHhhhhhcCCc-ccCCcccc
Q psy1221 136 RSCREDIGVERLFSIIENRNA------E--QGV--KVKTTSTQVYVASAQ--KNLVEPRMQLCHELWGGEK-TQEKPKLS 202 (690)
Q Consensus 136 ~~~g~~~~~~~l~~~~~~~~~------~--~~~--~~~~~~~~v~v~~~~--~~~~~~~~~l~~~L~~~~i-~~~~~~~~ 202 (690)
+-+=-|+|++||+.++-.... + .+. +++-.+.+|.|++.. +.....+.+|++.||+.++ +..+....
T Consensus 530 ~VIEPS~GIgRIl~AilE~s~~~~~~De~R~~L~~Pp~IAP~qVaIlPL~~~ee~~~~A~eLa~~LR~~GIrVelDd~~~ 609 (684)
T PLN02734 530 SVIEPSFGIGRIIYCLFEHSFYTRPGDEQLNVFRFPPLVAPIKCTVFPLVQNQQLNAVAKVISKELTAAGISHKIDITGT 609 (684)
T ss_pred ceEecCccHHHHHHHHHHHHhccccCCCcceEEecCcccCCcEEEEEEecCChHHHHHHHHHHHHHHhCCCEEEEECCCC
Confidence 444458999999976554322 1 111 122344555555443 3456788999999999654 44455566
Q ss_pred cHHHHHhhhhhcCCCC
Q psy1221 203 GLQSFLKGVQENNPNL 218 (690)
Q Consensus 203 ~Lk~~lk~~~kl~~~~ 218 (690)
++.+.++.+++.+...
T Consensus 610 SIGKRyrrADeiGIPf 625 (684)
T PLN02734 610 SIGKRYARTDELGVPF 625 (684)
T ss_pred CHhHHHHHHHHcCCCE
Confidence 8889998888877543
No 188
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=32.71 E-value=2.3e+02 Score=34.62 Aligned_cols=36 Identities=11% Similarity=0.170 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhccCCeEEEEcCccchHHHHHhhcCc
Q psy1221 366 EIAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYMPD 401 (690)
Q Consensus 366 ~l~~~i~~~~~~~pgg~lvFFpSY~~l~~v~~~~~~ 401 (690)
.+...+..+....++.+|||+++=.-.+.+++.++.
T Consensus 259 ~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~ 294 (844)
T TIGR02621 259 TMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPK 294 (844)
T ss_pred HHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHh
Confidence 333334444444567799999999999999988843
No 189
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=30.88 E-value=2.4e+02 Score=31.71 Aligned_cols=23 Identities=17% Similarity=0.127 Sum_probs=19.1
Q ss_pred ccCCeEEEEcCccchHHHHHhhc
Q psy1221 377 IVPKGMVCFFPSYDYEAIVYNYM 399 (690)
Q Consensus 377 ~~pgg~lvFFpSY~~l~~v~~~~ 399 (690)
..++.+|||+++-.-.+.+++.+
T Consensus 240 ~~~~~~lVF~~t~~~~~~l~~~L 262 (460)
T PRK11776 240 HQPESCVVFCNTKKECQEVADAL 262 (460)
T ss_pred cCCCceEEEECCHHHHHHHHHHH
Confidence 35678999999999888888866
No 190
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=30.51 E-value=50 Score=30.89 Aligned_cols=35 Identities=23% Similarity=0.413 Sum_probs=23.3
Q ss_pred ceEEE-EECCCCCccEEEEEecCchhhHHHHHhhcceEEEeCCCCCch
Q psy1221 469 GRILV-TKNPELSKSHIKYILLNPANHFTDIVQDARSIIVAGGTMEPV 515 (690)
Q Consensus 469 ~~i~~-~~~~~~~~~~l~~~~ldp~~~~~~~~~~~~svil~SgTLsP~ 515 (690)
+.+++ +.+++-.++ .+|.. +.+++||+++-++.+.
T Consensus 48 g~iL~~v~~G~~~EG----------iD~~g--~~~r~vii~glPfp~~ 83 (142)
T smart00491 48 GALLLAVARGKVSEG----------IDFPD--DLGRAVIIVGIPFPNP 83 (142)
T ss_pred CEEEEEEeCCeeecc----------eecCC--CccEEEEEEecCCCCC
Confidence 56665 666554544 44444 5789999999998544
No 191
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=30.23 E-value=68 Score=33.52 Aligned_cols=66 Identities=15% Similarity=0.195 Sum_probs=38.3
Q ss_pred eEEEEEEcCCCcceEeecc----chhhhhhhcCCCCCCCCccchhhhhhhhccccc----ccCcceeeeeHHHHHHHHHh
Q psy1221 82 VIYEAVLKDQAVGSVAGGG----RYDNLVGMFDPKNKTTPCVAAKLLHEVQGLLET----SCRSCREDIGVERLFSIIEN 153 (690)
Q Consensus 82 ~vFe~~~~~~~~~~i~~GG----RYD~L~~~f~~~~~~~~~~g~~~~~~~~~~~~~----~~~~~g~~~~~~~l~~~~~~ 153 (690)
--|+++.++ ..|++|| +|+.+.++|...+. -|.-+. ......++- -++-.||++|+|||+.++-.
T Consensus 182 ~~fdl~~~g---~Ei~~G~~r~~d~~~l~~~~~~~~~-~~~~~~---~~~~~yl~a~~~G~pp~~G~glGieRL~m~~~g 254 (269)
T cd00669 182 DAFDLFING---VEVGNGSSRLHDPDIQAEVFQEQGI-NKEAGM---EYFEFYLKALEYGLPPHGGLGIGIDRLIMLMTN 254 (269)
T ss_pred EEEEEeeCC---EEEeeCchhcCCHHHHHHHHHHhCc-Chhhcc---ccHHHHHHHHHcCCCCCceEeeHHHHHHHHHhC
Confidence 468888876 2788887 57778888753211 111000 000111111 24566899999999988765
Q ss_pred h
Q psy1221 154 R 154 (690)
Q Consensus 154 ~ 154 (690)
.
T Consensus 255 ~ 255 (269)
T cd00669 255 S 255 (269)
T ss_pred C
Confidence 3
No 192
>PLN02532 asparagine-tRNA synthetase
Probab=29.83 E-value=55 Score=38.34 Aligned_cols=63 Identities=16% Similarity=0.225 Sum_probs=37.1
Q ss_pred eEEEEEEcCCCcceEeecc----chhhhhhhcCCCCCCCCccchhhhhhhhccccc----ccCcceeeeeHHHHHHHHHh
Q psy1221 82 VIYEAVLKDQAVGSVAGGG----RYDNLVGMFDPKNKTTPCVAAKLLHEVQGLLET----SCRSCREDIGVERLFSIIEN 153 (690)
Q Consensus 82 ~vFe~~~~~~~~~~i~~GG----RYD~L~~~f~~~~~~~~~~g~~~~~~~~~~~~~----~~~~~g~~~~~~~l~~~~~~ 153 (690)
--|+.+.++. +.|++|+ |||.|..++...+-+ |. +..-.++- .++--||+||+|||+..+-.
T Consensus 545 ~~FDLlvp~~--GEIigGsqRE~r~e~L~~~~ke~Gld-~e-------~~ewYLdlrryG~pPHgGfGLG~ERLvm~ltG 614 (633)
T PLN02532 545 AAFDLVVPKV--GTVITGSQNEERMDILNARIEELGLP-RE-------QYEWYLDLRRHGTVKHSGFSLGFELMVLFATG 614 (633)
T ss_pred EEEEEecCCC--eEEeeCcEeHHHHHHHHHHHHHcCCC-hh-------hHHHHHHHHHcCCCCCeEEEEhHHHHHHHHhC
Confidence 4788888762 4688887 688887776431110 00 01111111 12344799999999988765
Q ss_pred h
Q psy1221 154 R 154 (690)
Q Consensus 154 ~ 154 (690)
.
T Consensus 615 l 615 (633)
T PLN02532 615 L 615 (633)
T ss_pred C
Confidence 3
No 193
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=28.92 E-value=2.8e+02 Score=28.59 Aligned_cols=81 Identities=19% Similarity=0.164 Sum_probs=45.5
Q ss_pred HHHHHHHHHH-HHh-CCCceEEEecCCCCCCCCcce--eEEEEEE---cCCCcceEeeccch-hhhhhhcCCCCCCCCcc
Q psy1221 48 EAIKLLFHYC-QIY-GLKDTIVFDLSLARGLDYYTG--VIYEAVL---KDQAVGSVAGGGRY-DNLVGMFDPKNKTTPCV 119 (690)
Q Consensus 48 ~~l~~~~~~l-~~~-g~~~~i~~d~~~~r~~~YYtG--~vFe~~~---~~~~~~~i~~GGRY-D~L~~~f~~~~~~~~~~ 119 (690)
.+|+.+++.+ +.+ |...++.+.++.-+ ||- .-..+++ .+..--.|++.|-. -.+++.+|-+ +..|+
T Consensus 140 ~~Lk~~l~~l~~~lfG~~~~~r~~ps~fP----ftePs~e~~i~~~~~~~~~wiEvgg~G~vhP~Vl~~~gid-~~~~~- 213 (247)
T PF01409_consen 140 EDLKGTLEELLKELFGIDVKVRFRPSYFP----FTEPSREADIYCGVCKGGGWIEVGGCGMVHPEVLENWGID-EEYPG- 213 (247)
T ss_dssp HHHHHHHHHHHHHHHTTTEEEEEEECEET----TEEEEEEEEEEEECTTTTCEEEEEEEEEE-HHHHHHTT---TTSEE-
T ss_pred hHHHHHHHHHHHHHhhcccceEeecCCCC----cccCCeEEEEEEeeccCCCceEEeecccccHhhhhccCcC-ccceE-
Confidence 3344443333 344 87656888886543 344 4444555 22112257777776 3566777642 34454
Q ss_pred chhhhhhhhcccccccCcceeeeeHHHHHHHHH
Q psy1221 120 AAKLLHEVQGLLETSCRSCREDIGVERLFSIIE 152 (690)
Q Consensus 120 g~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~ 152 (690)
..|.+|+|||+-+..
T Consensus 214 ------------------~A~G~GleRlam~~~ 228 (247)
T PF01409_consen 214 ------------------FAFGLGLERLAMLKY 228 (247)
T ss_dssp ------------------EEEEEEHHHHHHHHH
T ss_pred ------------------EEecCCHHHHHHHHc
Confidence 449999999987654
No 194
>PRK13767 ATP-dependent helicase; Provisional
Probab=28.44 E-value=3.3e+02 Score=33.66 Aligned_cols=97 Identities=12% Similarity=0.074 Sum_probs=48.5
Q ss_pred ccEEEEecccCCChhhhHHhhccCCCC-CCCceEeeecCCccCCCCeeEEEeecCCCCceeEEeecccCChHHHHHHHHH
Q psy1221 292 ARSIIVAGGTMEPVSEFKDQLFGSLGV-PESRIHHFSCGHVIPKENILPLILCSGPTNRKFDLTFENRTKGDTLKEIAMT 370 (690)
Q Consensus 292 ~~svIl~SGTL~P~~~~~~~L~~~~g~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~y~~R~~~~~~~~l~~~ 370 (690)
..-.|++|||+.|.+...+.|.+.... ....+..+... ...+-.+.+... ... + .+ .........+...
T Consensus 207 ~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~-~~k~~~i~v~~p----~~~-l--~~--~~~~~~~~~l~~~ 276 (876)
T PRK13767 207 EFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDAR-FVKPFDIKVISP----VDD-L--IH--TPAEEISEALYET 276 (876)
T ss_pred CCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccC-CCccceEEEecc----Ccc-c--cc--cccchhHHHHHHH
Confidence 345799999999999888877432100 01111111111 111111111111 000 1 00 1112233445556
Q ss_pred HHHHHhccCCeEEEEcCccchHHHHHhhc
Q psy1221 371 ITNLCTIVPKGMVCFFPSYDYEAIVYNYM 399 (690)
Q Consensus 371 i~~~~~~~pgg~lvFFpSY~~l~~v~~~~ 399 (690)
|.++.+. .+.+|||.+|-..-+.++..+
T Consensus 277 L~~~i~~-~~~~LVF~nTr~~ae~la~~L 304 (876)
T PRK13767 277 LHELIKE-HRTTLIFTNTRSGAERVLYNL 304 (876)
T ss_pred HHHHHhc-CCCEEEEeCCHHHHHHHHHHH
Confidence 6665543 467999999998888777765
No 195
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=27.95 E-value=74 Score=37.03 Aligned_cols=62 Identities=19% Similarity=0.298 Sum_probs=37.5
Q ss_pred eEEEEEEcCCCcceEeecc----chhhhhhhcCCCCCCCCccchhhhhhhhccccc----ccCcceeeeeHHHHHHHHHh
Q psy1221 82 VIYEAVLKDQAVGSVAGGG----RYDNLVGMFDPKNKTTPCVAAKLLHEVQGLLET----SCRSCREDIGVERLFSIIEN 153 (690)
Q Consensus 82 ~vFe~~~~~~~~~~i~~GG----RYD~L~~~f~~~~~~~~~~g~~~~~~~~~~~~~----~~~~~g~~~~~~~l~~~~~~ 153 (690)
-.|+.+.++ .+.|++|| |||.|.+++...+ .+. .+.+--++- .++--||+||+|||+.++-.
T Consensus 498 ~~fDLlvpg--iGEI~gGsqRe~~~e~L~~~ike~g--l~~------e~~~wYLd~rryG~pPhgGfGLGiERLvm~ltG 567 (586)
T PTZ00425 498 AAMDVLVPK--IGEVIGGSQREDNLERLDKMIKEKK--LNM------ESYWWYRQLRKFGSHPHAGFGLGFERLIMLVTG 567 (586)
T ss_pred EEEeEEccC--ceEEccCCCccccHHHHHHHHHHcC--CCh------hHHHHHHHHhhCCCCCCceEEEcHHHHHHHHcC
Confidence 578888876 24788887 7888887764321 110 001111111 12445799999999988765
No 196
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=25.94 E-value=61 Score=36.10 Aligned_cols=57 Identities=23% Similarity=0.296 Sum_probs=31.0
Q ss_pred ceEeecc----chhhhhhhcCCCCCCCCccchhhhhhhhcccccccCcceeeeeHHHHHHHHHhh
Q psy1221 94 GSVAGGG----RYDNLVGMFDPKNKTTPCVAAKLLHEVQGLLETSCRSCREDIGVERLFSIIENR 154 (690)
Q Consensus 94 ~~i~~GG----RYD~L~~~f~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~ 154 (690)
+.|+||| +||.|++++...+-+...-. ---++-. -+ ..+-.||+||+|||...+-..
T Consensus 357 gEIigGsqRe~~~d~L~~ri~~~gl~~e~~~--wYld~~k-yG-~~PHaGfGlG~ERlv~~i~gl 417 (435)
T COG0017 357 GEIIGGSQREHDYDLLVERIKEKGLDPESYE--WYLDLRK-YG-MPPHAGFGLGLERLVMYILGL 417 (435)
T ss_pred eeeecceeccccHHHHHHHHHHcCCChHHhH--HHHHHHH-cC-CCCCcccccCHHHHHHHHhCC
Confidence 5788887 69999988764221100000 0000000 00 134457999999999877643
No 197
>KOG0925|consensus
Probab=25.84 E-value=2.2e+02 Score=32.25 Aligned_cols=45 Identities=11% Similarity=0.179 Sum_probs=33.9
Q ss_pred ecccCChHHHHHHHHHHHHHHhc-cCCeEEEEcCccchHHHHHhhc
Q psy1221 355 FENRTKGDTLKEIAMTITNLCTI-VPKGMVCFFPSYDYEAIVYNYM 399 (690)
Q Consensus 355 y~~R~~~~~~~~l~~~i~~~~~~-~pgg~lvFFpSY~~l~~v~~~~ 399 (690)
|..-...++++...+++++|+.. -||-+|||.|+=+=.+.+-+.+
T Consensus 228 Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i 273 (699)
T KOG0925|consen 228 YTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKI 273 (699)
T ss_pred ecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHH
Confidence 33334477899999999998765 5899999999987766554433
No 198
>PLN02850 aspartate-tRNA ligase
Probab=25.26 E-value=84 Score=36.24 Aligned_cols=75 Identities=11% Similarity=0.187 Sum_probs=44.3
Q ss_pred EEEe--cCCCCCCCCcc-------e--eEEEEEEcCCCcceEeecc----chhhhhhhcCCCCCCCCccchhhhhhhhcc
Q psy1221 66 IVFD--LSLARGLDYYT-------G--VIYEAVLKDQAVGSVAGGG----RYDNLVGMFDPKNKTTPCVAAKLLHEVQGL 130 (690)
Q Consensus 66 i~~d--~~~~r~~~YYt-------G--~vFe~~~~~~~~~~i~~GG----RYD~L~~~f~~~~~~~~~~g~~~~~~~~~~ 130 (690)
+.++ |..+|.+ |+ + --|+++.++ ..|++|+ +|+.|.+++...+ .+. .++...
T Consensus 418 ~ii~~yP~~~~pf--Y~~~~~~d~~~~~~fDl~i~G---~EI~~G~qr~~d~~~l~~r~~~~g--~d~------~~~~~Y 484 (530)
T PLN02850 418 YILHRYPLAVRPF--YTMPCPDDPKYSNSFDVFIRG---EEIISGAQRVHDPELLEKRAEECG--IDV------KTISTY 484 (530)
T ss_pred EEEECCccccCch--hccccCCCCCeEEEEEEEeCC---EEEeccceecCCHHHHHHHHHHcC--CCh------HHHHHH
Confidence 4455 7777875 32 2 479999876 3788887 4667766664311 110 012222
Q ss_pred cccc----cCcceeeeeHHHHHHHHHh
Q psy1221 131 LETS----CRSCREDIGVERLFSIIEN 153 (690)
Q Consensus 131 ~~~~----~~~~g~~~~~~~l~~~~~~ 153 (690)
++-- ++--||+||+|||+.++-.
T Consensus 485 l~a~~~G~pPhgG~GiGlERLvM~l~g 511 (530)
T PLN02850 485 IDSFRYGAPPHGGFGVGLERVVMLFCG 511 (530)
T ss_pred HHHHHcCCCCCceEEEcHHHHHHHHcC
Confidence 2111 2333799999999988765
No 199
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=24.43 E-value=85 Score=36.35 Aligned_cols=79 Identities=16% Similarity=0.205 Sum_probs=47.2
Q ss_pred ceEEEe--cCCCCCC-CCc------ceeEEEEEEcCCCcceEeecc----chhhhhhhcCCCCCCCCccchhhhhhhhcc
Q psy1221 64 DTIVFD--LSLARGL-DYY------TGVIYEAVLKDQAVGSVAGGG----RYDNLVGMFDPKNKTTPCVAAKLLHEVQGL 130 (690)
Q Consensus 64 ~~i~~d--~~~~r~~-~YY------tG~vFe~~~~~~~~~~i~~GG----RYD~L~~~f~~~~~~~~~~g~~~~~~~~~~ 130 (690)
+.+.+| |..+|.+ ..- .---|+.+.++ ..|++|+ +|+.|.+++...+. +.. +++--
T Consensus 436 ~~fI~d~yP~~~rpFY~~~~~~dp~~s~~fDlf~~G---~EI~sG~qR~~d~~~l~~r~~~~G~--d~~------~~~~Y 504 (550)
T PTZ00401 436 DFFISDRFPSSARPFYTMECKDDERFTNSYDMFIRG---EEISSGAQRIHDPDLLLARAKMLNV--DLT------PIKEY 504 (550)
T ss_pred CEEEECCCChhhCchhcCcCCCCCCEEEEEEEEeCC---EEEccchhhcCCHHHHHHHHHHcCC--Cch------hhHHH
Confidence 356678 7776762 211 12579999876 4788884 68888888864221 110 11111
Q ss_pred ccc----ccCcceeeeeHHHHHHHHHh
Q psy1221 131 LET----SCRSCREDIGVERLFSIIEN 153 (690)
Q Consensus 131 ~~~----~~~~~g~~~~~~~l~~~~~~ 153 (690)
++- -++-.||+||+|||+.++-.
T Consensus 505 l~a~~~G~PPhgG~GiGlERLvM~~lg 531 (550)
T PTZ00401 505 VDSFRLGAWPHGGFGVGLERVVMLYLG 531 (550)
T ss_pred HHHHHcCCCCCceEEEhHHHHHHHHhC
Confidence 111 12334799999999988765
No 200
>PLN02603 asparaginyl-tRNA synthetase
Probab=23.59 E-value=85 Score=36.43 Aligned_cols=63 Identities=21% Similarity=0.284 Sum_probs=35.7
Q ss_pred eEEEEEEcCCCcceEeecc----chhhhhhhcCCCCCCCCccchhhhhhhhccccc----ccCcceeeeeHHHHHHHHHh
Q psy1221 82 VIYEAVLKDQAVGSVAGGG----RYDNLVGMFDPKNKTTPCVAAKLLHEVQGLLET----SCRSCREDIGVERLFSIIEN 153 (690)
Q Consensus 82 ~vFe~~~~~~~~~~i~~GG----RYD~L~~~f~~~~~~~~~~g~~~~~~~~~~~~~----~~~~~g~~~~~~~l~~~~~~ 153 (690)
-.|+.+.++ .+.|++|+ ||+.|.++....+- .| .+..--++- ..+--||+||+|||+..+-.
T Consensus 477 ~~fDLl~p~--~gEl~gGsqRe~r~e~L~~~~~e~g~-~~-------e~y~wYLdl~r~G~pPhgGfGlG~ERLvm~ltg 546 (565)
T PLN02603 477 AAMDMLVPR--VGELIGGSQREERLEYLEARLDELKL-NK-------ESYWWYLDLRRYGSVPHAGFGLGFERLVQFATG 546 (565)
T ss_pred EEEEEEecC--ceEecCHHHHHhhHHHHHHHHHHcCC-CH-------HHHHHHHHHHhccCCCCceeEEcHHHHHHHHhC
Confidence 367777776 34788887 67777776542110 00 001000111 12345799999999988765
Q ss_pred h
Q psy1221 154 R 154 (690)
Q Consensus 154 ~ 154 (690)
.
T Consensus 547 ~ 547 (565)
T PLN02603 547 I 547 (565)
T ss_pred C
Confidence 3
No 201
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=23.18 E-value=79 Score=29.52 Aligned_cols=30 Identities=23% Similarity=0.416 Sum_probs=22.5
Q ss_pred cchHHHHHhhcCcccccccCCCCcchHHHHHhhhhcCCCCCCC
Q psy1221 389 YDYEAIVYNYMPDIEKTQEKPKLSGLQSFLKGVQENNPNLSKP 431 (690)
Q Consensus 389 Y~~l~~v~~~~~~~~~~~~~~k~sg~~~~L~~l~~~k~~~~e~ 431 (690)
|++|++++..|. + ++ .+++|.+.+.++.|+
T Consensus 1 y~~m~~v~~~~~-------~---~~---~~~~l~~~~~i~~e~ 30 (141)
T smart00492 1 YQYMESFVQYWK-------E---NG---ILENINKNLLLLVQG 30 (141)
T ss_pred CHHHHHHHHHHH-------H---cC---chhhHhcCCeEEEeC
Confidence 789999999762 2 12 677888888888877
No 202
>KOG1000|consensus
Probab=23.03 E-value=5.1e+02 Score=29.62 Aligned_cols=97 Identities=14% Similarity=0.067 Sum_probs=64.8
Q ss_pred HHHHHHHHH---hhhcccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCch-hHHHHHHHhhhcccC
Q psy1221 575 KEIAMTITN---LCTIVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKTS-EVDKVLSDYGTSVEK 650 (690)
Q Consensus 575 ~~l~~~I~~---l~~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~~-~~~~~l~~f~~~~~~ 650 (690)
..+.+.|.. +....+..+|||..-..+|+.+-..+.+.++. -|-+.+...+ +++.+.+.|..+-.
T Consensus 475 ~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg----------~IRIDGst~s~~R~ll~qsFQ~see- 543 (689)
T KOG1000|consen 475 AAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVG----------SIRIDGSTPSHRRTLLCQSFQTSEE- 543 (689)
T ss_pred HHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCC----------eEEecCCCCchhHHHHHHHhccccc-
Confidence 445555555 44456778999999999999999888865542 4566666655 78899999987621
Q ss_pred CceEEEEeeCcccccccccCCCcceEEEEEcCCCCC
Q psy1221 651 GGALMLSVIGGKLSEGLNFSDDLGRCVVVMCNSNPL 686 (690)
Q Consensus 651 ~~aiLfaV~gG~~sEGIDf~g~~~r~ViivgLPfp~ 686 (690)
-...++++- --+=|++|+ .++.||..-||+-|
T Consensus 544 v~VAvlsIt--A~gvGLt~t--Aa~~VVFaEL~wnP 575 (689)
T KOG1000|consen 544 VRVAVLSIT--AAGVGLTLT--AASVVVFAELHWNP 575 (689)
T ss_pred eEEEEEEEe--ecccceeee--ccceEEEEEecCCC
Confidence 122233331 133466665 57889988888643
No 203
>KOG0350|consensus
Probab=23.00 E-value=2.1e+02 Score=32.58 Aligned_cols=83 Identities=13% Similarity=0.171 Sum_probs=52.3
Q ss_pred cCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCchhHHHHHHHhhhcccCCceEEEEeeCcccccccc
Q psy1221 589 PKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKTSEVDKVLSDYGTSVEKGGALMLSVIGGKLSEGLN 668 (690)
Q Consensus 589 ~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~~~~~~~l~~f~~~~~~~~aiLfaV~gG~~sEGID 668 (690)
-.++|||-.|-+...+....++-.. .+...+..-|--.-....+.+++++|... +--+|.|. .-++.|||
T Consensus 429 ~~r~lcf~~S~~sa~Rl~~~L~v~~-----~~~~~~~s~~t~~l~~k~r~k~l~~f~~g---~i~vLIcS--D~laRGiD 498 (620)
T KOG0350|consen 429 LNRTLCFVNSVSSANRLAHVLKVEF-----CSDNFKVSEFTGQLNGKRRYKMLEKFAKG---DINVLICS--DALARGID 498 (620)
T ss_pred cceEEEEecchHHHHHHHHHHHHHh-----ccccchhhhhhhhhhHHHHHHHHHHHhcC---CceEEEeh--hhhhcCCc
Confidence 3579999999998888777666110 00000001111111223678999999875 56777666 99999999
Q ss_pred cCCCcceEEEEEcCC
Q psy1221 669 FSDDLGRCVVVMCNS 683 (690)
Q Consensus 669 f~g~~~r~ViivgLP 683 (690)
+.| ..+||=.-.|
T Consensus 499 v~~--v~~VINYd~P 511 (620)
T KOG0350|consen 499 VND--VDNVINYDPP 511 (620)
T ss_pred ccc--cceEeecCCC
Confidence 987 4566655544
No 204
>PLN02221 asparaginyl-tRNA synthetase
Probab=22.50 E-value=87 Score=36.41 Aligned_cols=62 Identities=19% Similarity=0.390 Sum_probs=37.2
Q ss_pred eEEEEEEcCCCcceEeecc----chhhhhhhcCCCCCCCCccchhhhhhhhccccc----ccCcceeeeeHHHHHHHHHh
Q psy1221 82 VIYEAVLKDQAVGSVAGGG----RYDNLVGMFDPKNKTTPCVAAKLLHEVQGLLET----SCRSCREDIGVERLFSIIEN 153 (690)
Q Consensus 82 ~vFe~~~~~~~~~~i~~GG----RYD~L~~~f~~~~~~~~~~g~~~~~~~~~~~~~----~~~~~g~~~~~~~l~~~~~~ 153 (690)
--|+.+.++ .+.|++|+ ||+.|..+....+.+... +.--++- .++-.||+||+|||+.++-.
T Consensus 484 ~~fDLl~~g--~~El~~g~~R~~r~e~l~~~~~~~g~~~~~--------~~~yLda~~~G~pPh~G~GlGiERLvm~l~g 553 (572)
T PLN02221 484 AAMDVLVPK--VGELIGGSQREERYDVIKQRIEEMGLPIEP--------YEWYLDLRRYGTVKHCGFGLGFERMILFATG 553 (572)
T ss_pred EEEEEecCC--ceEECCHHHHHHHHHHHHHHHHHcCCChhh--------hHHHHHHhhCCCCCCceEEEeHHHHHHHHcC
Confidence 389999886 34788887 688877766422111000 1111111 13445799999999988765
No 205
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=21.75 E-value=4.1e+02 Score=32.22 Aligned_cols=97 Identities=10% Similarity=0.118 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHhhhccc-----CcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCchhHHHHHHHhhh
Q psy1221 572 DTLKEIAMTITNLCTIVP-----KGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKTSEVDKVLSDYGT 646 (690)
Q Consensus 572 ~~~~~l~~~I~~l~~~~~-----gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~~~~~~~l~~f~~ 646 (690)
...+.+++.|.+.+...+ |.++||.-+.+..+.+.+.+.+.... .+.+-+.+=..+.++-+.+++.|..
T Consensus 404 ~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype------~~~~~a~~IT~d~~~~q~~Id~f~~ 477 (875)
T COG4096 404 FRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPE------YNGRYAMKITGDAEQAQALIDNFID 477 (875)
T ss_pred chHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCcc------ccCceEEEEeccchhhHHHHHHHHh
Confidence 455678888888887633 56999999999999999999965422 1112222222334466788999987
Q ss_pred cccCCceEEEEeeCcccccccccCCCcceEEEE
Q psy1221 647 SVEKGGALMLSVIGGKLSEGLNFSDDLGRCVVV 679 (690)
Q Consensus 647 ~~~~~~aiLfaV~gG~~sEGIDf~g~~~r~Vii 679 (690)
. +.-+.|-.+| +=+.=|||.|- |.++|.
T Consensus 478 k-e~~P~Iaitv--dlL~TGiDvpe--v~nlVF 505 (875)
T COG4096 478 K-EKYPRIAITV--DLLTTGVDVPE--VVNLVF 505 (875)
T ss_pred c-CCCCceEEeh--hhhhcCCCchh--eeeeee
Confidence 2 2357888888 88999999985 444443
No 206
>KOG0924|consensus
Probab=21.19 E-value=1.7e+02 Score=34.54 Aligned_cols=27 Identities=22% Similarity=0.529 Sum_probs=16.9
Q ss_pred HHHHHhccc--EEEEecccCCChhhhHHhh
Q psy1221 285 FTDIVQDAR--SIIVAGGTMEPVSEFKDQL 312 (690)
Q Consensus 285 l~~~~~~~~--svIl~SGTL~P~~~~~~~L 312 (690)
|+.++++-+ -+|.|||||.- +.|.+-.
T Consensus 491 lk~~larRrdlKliVtSATm~a-~kf~nfF 519 (1042)
T KOG0924|consen 491 LKKVLARRRDLKLIVTSATMDA-QKFSNFF 519 (1042)
T ss_pred HHHHHHhhccceEEEeeccccH-HHHHHHh
Confidence 344444333 38999999965 5565544
No 207
>KOG0923|consensus
Probab=20.04 E-value=1e+02 Score=36.06 Aligned_cols=46 Identities=15% Similarity=0.288 Sum_probs=34.2
Q ss_pred eEEeecccCChHHHHHHHHHHHHHHhccC-CeEEEEcCccchHHHHH
Q psy1221 351 FDLTFENRTKGDTLKEIAMTITNLCTIVP-KGMVCFFPSYDYEAIVY 396 (690)
Q Consensus 351 l~~~y~~R~~~~~~~~l~~~i~~~~~~~p-gg~lvFFpSY~~l~~v~ 396 (690)
++.-|......+|+++...+|++|...-| |-+|||++--+=.+.+.
T Consensus 444 Vdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~ 490 (902)
T KOG0923|consen 444 VDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVK 490 (902)
T ss_pred eeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHH
Confidence 44457777778899999999998877765 67999999766544443
Done!