Query psy1221
Match_columns 690
No_of_seqs 516 out of 3541
Neff 7.7
Searched_HMMs 29240
Date Fri Aug 16 21:38:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1221.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1221hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a15_A XPD helicase, ATP-depen 100.0 2.6E-32 9E-37 314.4 19.0 205 449-689 326-532 (620)
2 3crv_A XPD/RAD3 related DNA he 100.0 1.3E-29 4.6E-34 289.0 18.3 199 450-688 271-477 (551)
3 3lc0_A Histidyl-tRNA synthetas 99.9 5E-26 1.7E-30 252.0 15.8 182 5-218 232-414 (456)
4 4g84_A Histidine--tRNA ligase, 99.9 1.3E-24 4.3E-29 242.9 18.6 197 3-218 213-420 (464)
5 3net_A Histidyl-tRNA synthetas 99.9 9E-25 3.1E-29 243.3 16.9 187 4-218 228-424 (465)
6 4g85_A Histidine-tRNA ligase, 99.9 1.7E-24 5.7E-29 244.8 17.8 196 4-218 267-473 (517)
7 3od1_A ATP phosphoribosyltrans 99.9 2.8E-24 9.5E-29 234.2 14.7 159 4-195 206-364 (400)
8 2vl7_A XPD; helicase, unknown 99.9 2.1E-22 7.3E-27 228.9 17.3 184 450-689 279-468 (540)
9 1z7m_A ATP phosphoribosyltrans 99.8 3.2E-21 1.1E-25 206.2 12.0 123 3-155 216-338 (344)
10 1wu7_A Histidyl-tRNA synthetas 99.8 6.9E-21 2.4E-25 210.8 13.7 179 5-218 205-385 (434)
11 4e51_A Histidine--tRNA ligase; 99.8 4.2E-20 1.4E-24 205.6 15.0 148 44-218 258-411 (467)
12 3rac_A Histidine-tRNA ligase; 99.8 1.1E-20 3.9E-25 203.8 9.8 119 12-155 233-367 (373)
13 4a15_A XPD helicase, ATP-depen 99.8 6.9E-19 2.3E-23 202.6 16.4 144 239-400 326-469 (620)
14 1h4v_B Histidyl-tRNA synthetas 99.8 1.3E-18 4.5E-23 191.8 16.8 148 44-218 231-380 (421)
15 1htt_A Histidyl-tRNA synthetas 99.8 9.1E-19 3.1E-23 193.2 13.6 149 44-218 230-382 (423)
16 1usy_A ATP phosphoribosyltrans 99.7 1.8E-18 6.3E-23 179.3 2.7 106 3-147 167-273 (275)
17 1qe0_A Histidyl-tRNA synthetas 99.7 4.1E-17 1.4E-21 179.7 12.6 146 45-217 230-381 (420)
18 3crv_A XPD/RAD3 related DNA he 99.7 1.3E-16 4.4E-21 181.8 13.4 135 242-397 273-411 (551)
19 2vl7_A XPD; helicase, unknown 98.9 8.2E-09 2.8E-13 117.0 14.8 116 258-401 291-406 (540)
20 2j3l_A Prolyl-tRNA synthetase; 98.4 2.2E-07 7.4E-12 106.1 5.4 136 64-218 342-526 (572)
21 1evl_A Threonyl-tRNA synthetas 98.2 1.5E-06 5.2E-11 94.6 6.1 133 54-218 201-351 (401)
22 2i4l_A Proline-tRNA ligase; al 98.1 7E-07 2.4E-11 99.0 2.3 122 66-216 291-419 (458)
23 1xti_A Probable ATP-dependent 97.8 0.00036 1.2E-08 74.6 16.9 91 574-684 238-329 (391)
24 3pey_A ATP-dependent RNA helic 97.7 0.00061 2.1E-08 72.6 15.7 80 588-684 242-322 (395)
25 3sqw_A ATP-dependent RNA helic 97.5 0.0025 8.5E-08 72.4 18.8 95 577-686 274-372 (579)
26 2v1x_A ATP-dependent DNA helic 97.5 0.0012 4.2E-08 75.2 15.8 144 502-684 200-346 (591)
27 1oyw_A RECQ helicase, ATP-depe 97.4 0.0017 6E-08 72.8 16.2 138 503-684 175-315 (523)
28 3i5x_A ATP-dependent RNA helic 97.4 0.0019 6.4E-08 73.0 16.6 94 577-685 325-422 (563)
29 2i4i_A ATP-dependent RNA helic 97.4 0.0015 5E-08 70.5 15.1 80 589-685 276-356 (417)
30 3fht_A ATP-dependent RNA helic 97.4 0.0012 4.2E-08 70.8 14.3 81 588-685 265-346 (412)
31 2db3_A ATP-dependent RNA helic 97.4 0.0027 9.3E-08 69.4 16.8 86 583-685 294-380 (434)
32 2hjv_A ATP-dependent RNA helic 97.4 0.0016 5.4E-08 61.0 12.8 92 574-685 23-115 (163)
33 1hv8_A Putative ATP-dependent 97.4 0.0016 5.6E-08 68.4 14.4 88 581-685 230-318 (367)
34 1fuk_A Eukaryotic initiation f 97.3 0.0016 5.6E-08 61.1 11.4 93 574-686 18-111 (165)
35 1s2m_A Putative ATP-dependent 97.3 0.0042 1.4E-07 66.5 16.1 81 588-685 257-338 (400)
36 2p6n_A ATP-dependent RNA helic 97.2 0.001 3.4E-08 64.4 9.7 88 581-685 46-134 (191)
37 2j0s_A ATP-dependent RNA helic 97.2 0.0057 2E-07 65.7 16.4 80 588-684 275-355 (410)
38 2rb4_A ATP-dependent RNA helic 97.1 0.0029 9.8E-08 60.0 11.4 80 588-684 33-113 (175)
39 1t5i_A C_terminal domain of A 97.1 0.0037 1.3E-07 59.1 11.4 80 588-684 30-110 (172)
40 2zt5_A Glycyl-tRNA synthetase; 97.0 0.00083 2.9E-08 77.6 7.5 129 46-217 469-613 (693)
41 3eiq_A Eukaryotic initiation f 97.0 0.0055 1.9E-07 65.7 13.5 81 588-685 279-360 (414)
42 2jgn_A DBX, DDX3, ATP-dependen 96.8 0.0068 2.3E-07 58.1 11.0 92 574-684 33-125 (185)
43 3eaq_A Heat resistant RNA depe 96.8 0.0064 2.2E-07 59.6 11.0 81 588-685 30-111 (212)
44 3fho_A ATP-dependent RNA helic 96.8 0.0016 5.5E-08 72.8 7.1 80 588-684 356-436 (508)
45 1wp9_A ATP-dependent RNA helic 96.6 0.0079 2.7E-07 65.4 11.4 96 572-684 343-448 (494)
46 3oiy_A Reverse gyrase helicase 96.5 0.018 6.3E-07 62.0 12.9 75 588-683 251-330 (414)
47 2va8_A SSO2462, SKI2-type heli 96.4 0.039 1.3E-06 64.1 15.7 163 493-672 164-357 (715)
48 2xau_A PRE-mRNA-splicing facto 96.3 0.013 4.3E-07 68.9 10.7 144 502-682 240-396 (773)
49 2yjt_D ATP-dependent RNA helic 95.2 0.00076 2.6E-08 63.8 0.0 82 588-686 29-111 (170)
50 1fuu_A Yeast initiation factor 96.2 0.0028 9.4E-08 67.6 4.3 82 588-686 258-340 (394)
51 1hc7_A Prolyl-tRNA synthetase; 96.1 0.0063 2.1E-07 67.4 6.4 117 74-218 220-346 (477)
52 3i32_A Heat resistant RNA depe 96.0 0.039 1.3E-06 57.1 12.0 92 574-685 16-108 (300)
53 1nj8_A Proline-tRNA synthetase 95.5 0.017 6E-07 63.5 7.2 119 72-218 213-339 (459)
54 1nj1_A PROR, proline-tRNA synt 95.5 0.012 4.1E-07 65.5 5.7 125 66-218 239-372 (501)
55 3fmp_B ATP-dependent RNA helic 95.5 0.005 1.7E-07 68.0 2.6 80 588-684 332-412 (479)
56 1qf6_A THRRS, threonyl-tRNA sy 95.4 0.046 1.6E-06 62.7 10.5 75 143-218 517-592 (642)
57 4a4z_A Antiviral helicase SKI2 95.4 0.098 3.4E-06 63.1 13.8 91 586-684 333-453 (997)
58 3uh0_A Threonyl-tRNA synthetas 95.4 0.073 2.5E-06 58.5 11.5 77 139-218 320-415 (460)
59 1c4o_A DNA nucleotide excision 95.3 0.28 9.7E-06 56.4 16.8 91 575-683 426-517 (664)
60 3l9o_A ATP-dependent RNA helic 95.3 0.14 4.7E-06 62.5 14.8 105 575-686 427-561 (1108)
61 2z0m_A 337AA long hypothetical 95.3 0.031 1E-06 57.8 7.7 78 586-684 217-295 (337)
62 2eyq_A TRCF, transcription-rep 95.2 0.13 4.3E-06 63.1 13.9 80 588-682 811-891 (1151)
63 4ddu_A Reverse gyrase; topoiso 95.2 0.098 3.3E-06 63.8 12.7 76 588-684 308-388 (1104)
64 3tbk_A RIG-I helicase domain; 95.1 0.071 2.4E-06 59.3 10.5 102 573-687 372-484 (555)
65 4gl2_A Interferon-induced heli 94.8 0.038 1.3E-06 63.9 7.3 97 577-684 386-493 (699)
66 1z5z_A Helicase of the SNF2/RA 94.7 0.21 7E-06 50.8 11.9 99 574-688 98-198 (271)
67 3h1t_A Type I site-specific re 94.6 0.18 6.1E-06 57.1 12.3 105 575-685 423-529 (590)
68 2p6r_A Afuhel308 helicase; pro 94.6 0.41 1.4E-05 55.3 15.5 80 588-672 241-341 (702)
69 2zj8_A DNA helicase, putative 94.5 0.21 7.1E-06 58.1 12.8 80 588-672 236-339 (720)
70 3jux_A Protein translocase sub 94.4 0.49 1.7E-05 54.4 14.8 153 493-684 400-559 (822)
71 4a2p_A RIG-I, retinoic acid in 94.2 0.11 3.6E-06 58.0 9.2 101 572-685 372-483 (556)
72 3a32_A Probable threonyl-tRNA 94.1 0.022 7.5E-07 63.0 3.1 72 143-216 316-397 (471)
73 2oca_A DAR protein, ATP-depend 94.0 0.26 8.8E-06 54.5 11.6 93 576-685 335-428 (510)
74 2xgj_A ATP-dependent RNA helic 93.9 0.66 2.3E-05 56.0 15.8 96 579-682 333-458 (1010)
75 1nyr_A Threonyl-tRNA synthetas 93.9 0.13 4.6E-06 59.0 9.2 142 52-218 446-599 (645)
76 2d7d_A Uvrabc system protein B 93.6 0.29 9.8E-06 56.4 11.4 91 575-683 432-523 (661)
77 2ykg_A Probable ATP-dependent 93.4 0.12 4E-06 59.7 7.9 100 573-685 381-491 (696)
78 2jlq_A Serine protease subunit 93.4 0.14 4.7E-06 56.1 7.9 73 588-681 187-259 (451)
79 4f92_B U5 small nuclear ribonu 93.0 1.1 3.7E-05 57.1 16.1 159 503-684 1084-1267(1724)
80 4a2w_A RIG-I, retinoic acid in 92.9 0.21 7.3E-06 59.8 9.3 99 574-685 615-724 (936)
81 4a2q_A RIG-I, retinoic acid in 92.9 0.25 8.5E-06 58.1 9.6 102 574-685 615-724 (797)
82 1nnh_A Asparaginyl-tRNA synthe 92.8 0.014 4.8E-07 60.4 -1.1 66 69-154 198-275 (294)
83 1z63_A Helicase of the SNF2/RA 92.5 0.66 2.3E-05 51.0 12.0 98 574-687 327-426 (500)
84 2z83_A Helicase/nucleoside tri 92.1 0.094 3.2E-06 57.6 4.4 73 588-681 189-261 (459)
85 1ati_A Glycyl-tRNA synthetase; 92.0 0.18 6.3E-06 56.0 6.6 83 135-218 355-454 (505)
86 1gku_B Reverse gyrase, TOP-RG; 91.9 0.21 7E-06 60.8 7.4 82 583-683 269-352 (1054)
87 2whx_A Serine protease/ntpase/ 91.8 0.23 7.8E-06 56.7 7.3 75 588-683 354-428 (618)
88 2v6i_A RNA helicase; membrane, 91.7 0.4 1.4E-05 52.1 8.7 66 588-671 170-235 (431)
89 2fwr_A DNA repair protein RAD2 91.6 0.2 6.9E-06 54.8 6.4 76 588-684 348-423 (472)
90 1gm5_A RECG; helicase, replica 91.5 0.13 4.4E-06 60.3 4.9 93 576-683 566-667 (780)
91 2wv9_A Flavivirin protease NS2 90.9 0.36 1.2E-05 55.6 7.7 75 588-683 409-483 (673)
92 3dmq_A RNA polymerase-associat 90.8 0.54 1.9E-05 56.5 9.4 93 575-685 492-586 (968)
93 1z3i_X Similar to RAD54-like; 90.7 1.1 3.7E-05 51.3 11.6 85 587-685 414-499 (644)
94 1yks_A Genome polyprotein [con 89.9 0.29 9.9E-06 53.3 5.5 70 589-679 177-246 (440)
95 4f92_B U5 small nuclear ribonu 89.6 1.7 6E-05 55.2 12.9 156 503-682 245-430 (1724)
96 3mwy_W Chromo domain-containin 89.6 0.97 3.3E-05 53.1 10.1 96 575-685 559-655 (800)
97 3rc3_A ATP-dependent RNA helic 88.8 1.3 4.3E-05 51.0 10.0 80 589-684 320-400 (677)
98 2fsf_A Preprotein translocase 87.9 2.7 9.3E-05 49.0 11.9 138 493-671 367-507 (853)
99 1tf5_A Preprotein translocase 87.8 6.3 0.00021 46.0 14.8 153 493-684 358-517 (844)
100 1nkt_A Preprotein translocase 81.9 12 0.00041 44.0 13.5 139 493-672 386-527 (922)
101 3o8b_A HCV NS3 protease/helica 72.0 4.5 0.00015 46.3 6.2 70 588-681 395-464 (666)
102 1g5h_A Mitochondrial DNA polym 71.9 5.4 0.00019 43.4 6.7 81 137-217 293-396 (454)
103 2w00_A HSDR, R.ECOR124I; ATP-b 59.3 58 0.002 39.2 12.7 40 637-684 638-677 (1038)
104 1xti_A Probable ATP-dependent 48.8 60 0.002 33.3 9.6 22 378-399 249-270 (391)
105 2xau_A PRE-mRNA-splicing facto 47.8 30 0.001 40.2 7.6 83 292-399 240-323 (773)
106 3pey_A ATP-dependent RNA helic 41.4 65 0.0022 32.9 8.4 29 371-399 234-263 (395)
107 2va8_A SSO2462, SKI2-type heli 40.4 53 0.0018 37.5 8.1 106 283-400 164-273 (715)
108 1x54_A Asparaginyl-tRNA synthe 39.4 29 0.001 37.4 5.3 64 81-154 344-416 (434)
109 1wyd_A Hypothetical aspartyl-t 39.2 29 0.001 37.3 5.3 19 136-154 393-411 (429)
110 3m4p_A Ehasnrs, asparaginyl-tR 38.8 32 0.0011 37.3 5.5 65 83-154 369-438 (456)
111 3fht_A ATP-dependent RNA helic 36.4 85 0.0029 32.4 8.4 22 378-399 265-286 (412)
112 3ikl_A DNA polymerase subunit 32.5 87 0.003 33.9 7.6 81 138-218 304-407 (459)
113 2v1x_A ATP-dependent DNA helic 32.0 1E+02 0.0035 34.4 8.5 87 292-400 200-288 (591)
114 1oyw_A RECQ helicase, ATP-depe 28.0 1.3E+02 0.0044 32.9 8.3 81 293-400 175-257 (523)
115 3i7f_A Aspartyl-tRNA synthetas 27.6 42 0.0014 37.2 4.2 60 83-153 462-529 (548)
116 3fho_A ATP-dependent RNA helic 27.6 1E+02 0.0035 33.5 7.4 22 378-399 356-377 (508)
117 2i4i_A ATP-dependent RNA helic 26.4 1.4E+02 0.0047 30.9 7.9 21 379-399 276-296 (417)
118 3sqw_A ATP-dependent RNA helic 25.2 1.9E+02 0.0064 31.9 9.1 33 367-399 274-308 (579)
119 1hv8_A Putative ATP-dependent 23.0 1.6E+02 0.0056 29.4 7.6 29 371-399 230-258 (367)
120 3i5x_A ATP-dependent RNA helic 22.8 2.6E+02 0.009 30.3 9.7 33 367-399 325-359 (563)
121 1s2m_A Putative ATP-dependent 22.7 1.6E+02 0.0054 30.2 7.5 22 378-399 257-278 (400)
122 4hvc_A Bifunctional glutamate/ 22.5 1.2E+02 0.004 33.4 6.5 77 139-216 279-370 (519)
123 1eov_A ASPRS, aspartyl-tRNA sy 22.3 83 0.0028 34.3 5.2 66 81-154 397-469 (487)
124 2db3_A ATP-dependent RNA helic 22.0 2.4E+02 0.0082 29.6 8.9 27 373-399 294-320 (434)
125 3eiq_A Eukaryotic initiation f 20.6 1.2E+02 0.0043 31.1 6.2 22 378-399 279-300 (414)
126 3nem_A Aspartyl-tRNA synthetas 20.5 1E+02 0.0034 33.2 5.3 65 82-154 351-420 (438)
127 2j0s_A ATP-dependent RNA helic 20.5 1.8E+02 0.0063 29.9 7.4 22 378-399 275-296 (410)
No 1
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.98 E-value=2.6e-32 Score=314.37 Aligned_cols=205 Identities=20% Similarity=0.288 Sum_probs=160.2
Q ss_pred CChHHHHHHHHHHHhccCCCceEEEEECCCCCccEEEEEecCchhhHHHHHhhcceEEEeCCCCCchhhHHHHhhccCCC
Q psy1221 449 RNPMLSVVTFLESLVNKNEDGRILVTKNPELSKSHIKYILLNPANHFTDIVQDARSIIVAGGTMEPVSEFKDQLFGSLGV 528 (690)
Q Consensus 449 ~s~l~~l~~fl~~l~~~~~~~~i~~~~~~~~~~~~l~~~~ldp~~~~~~~~~~~~svil~SgTLsP~~~f~~~l~~~~Gl 528 (690)
.+.+.++.+|+..+...+.+++++|.... .+..|+++|+||+..|+ ++ .++++|||||||+|+++|.+.+ |+
T Consensus 326 ~~~~~~~~~fl~~~~~~~~~~~~~~~~~~--~~~~l~~~~l~~~~~l~-~~-~~~~~il~SaTL~p~~~~~~~l----Gl 397 (620)
T 4a15_A 326 FSYCSSVASRIIAFSDQDEEKYAAILSPE--DGGYMQAACLDPSGILE-VL-KESKTIHMSGTLDPFDFYSDIT----GF 397 (620)
T ss_dssp CCHHHHHHHHHHHHHTSCTTTEEEEEECG--GGCEEEEEECCTHHHHG-GG-GGSEEEEEESSCCSHHHHHHHH----CC
T ss_pred ccHHHHHHHHHHHHhhcCCCCEEEEEEeC--CCcEEEEEECCHHHHHH-HH-hCCeEEEEccCCCcHHHHHHHh----CC
Confidence 46788999999988433334777786543 24799999999999999 88 9999999999999999999988 77
Q ss_pred CCCceEEEEeCCCccCCCeeEEEeecCCCCcceeeeccccCChHHHHHHHHHHHHhhhcccCcEEEEeccHHHHHHHHHH
Q psy1221 529 PESRIHHFSCGHVIPKENILPLILCSGPTNRKFDLTFENRTKGDTLKEIAMTITNLCTIVPKGMVCFFPSYDYEAIVYNY 608 (690)
Q Consensus 529 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~I~~l~~~~~gg~lVfF~Sy~~l~~v~~~ 608 (690)
+ ...++++|||+++|..++++++ +.++|++|+ +++++++++.|.++++.+|||+|||||||.+|+++++.
T Consensus 398 ~---~~~~~~~spf~~~~~~~~~~~~------~~~~~~~r~-~~~~~~~~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~ 467 (620)
T 4a15_A 398 E---IPFKKIGEIFPPENRYIAYYDG------VSSKYDTLD-EKELDRMATVIEDIILKVKKNTIVYFPSYSLMDRVENR 467 (620)
T ss_dssp C---CCEEECCCCSCGGGEEEEEECC------C-------C-HHHHHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHTSS
T ss_pred C---ceeeecCCCCCHHHeEEEEeCC------CCCcCCCCC-HHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHH
Confidence 5 5678999999999988877633 344677776 56789999999999999999999999999999999998
Q ss_pred HHhcCchhHHHHHhcCceEEEcCCCc--hhHHHHHHHhhhcccCCceEEEEeeCcccccccccCCCcceEEEEEcCCCCC
Q psy1221 609 MRDNHFIERIARIAKKKVVFREPKKT--SEVDKVLSDYGTSVEKGGALMLSVIGGKLSEGLNFSDDLGRCVVVMCNSNPL 686 (690)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~i~~E~~~~--~~~~~~l~~f~~~~~~~~aiLfaV~gG~~sEGIDf~g~~~r~ViivgLPfp~ 686 (690)
|+ . .. .+ |.++. .+++.++++|+ . +++|||||+||+|||||||+|+.+|+|||+|||||+
T Consensus 468 l~-~-~~---------~~---~~q~~~~~~~~~ll~~f~-~---~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPfp~ 529 (620)
T 4a15_A 468 VS-F-EH---------MK---EYRGIDQKELYSMLKKFR-R---DHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFPR 529 (620)
T ss_dssp CC-S-CC---------EE---CCTTCCSHHHHHHHHHHT-T---SCCEEEEETTSCC--------CCCCEEEESSCCCCC
T ss_pred HH-h-cc---------hh---ccCCCChhHHHHHHHHhc-c---CCcEEEEEecCceeccccCCCCceEEEEEEcCCCCC
Confidence 87 1 11 12 55543 37899999999 3 799999999999999999999999999999999999
Q ss_pred CCC
Q psy1221 687 RVP 689 (690)
Q Consensus 687 p~d 689 (690)
|++
T Consensus 530 ~~p 532 (620)
T 4a15_A 530 PDA 532 (620)
T ss_dssp CCH
T ss_pred CCH
Confidence 964
No 2
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.96 E-value=1.3e-29 Score=289.02 Aligned_cols=199 Identities=18% Similarity=0.201 Sum_probs=162.1
Q ss_pred ChHHHHHHHHHHHhccCCCceEEEEECCCCCccEEEEEecCchhhHHHHHhhc-ceEEEeCCCCCchhhHHHHhhccCCC
Q psy1221 450 NPMLSVVTFLESLVNKNEDGRILVTKNPELSKSHIKYILLNPANHFTDIVQDA-RSIIVAGGTMEPVSEFKDQLFGSLGV 528 (690)
Q Consensus 450 s~l~~l~~fl~~l~~~~~~~~i~~~~~~~~~~~~l~~~~ldp~~~~~~~~~~~-~svil~SgTLsP~~~f~~~l~~~~Gl 528 (690)
+.+..+.+|+..+.. +++++ +... + .|+++|+||+..|+ +++++ +++|||||||+|+++|.+.+ |+
T Consensus 271 ~~~~~l~~~~~~~~~--~~~~v-~~~~----~-~l~~~pl~~~~~l~-~~~~~~~svIltSaTL~~~~~~~~~l----Gl 337 (551)
T 3crv_A 271 IHIGSILRFFSLLSI--GSFIP-FSYS----K-RLVIKNPEISYYLN-LLNDNELSIILMSGTLPPREYMEKVW----GI 337 (551)
T ss_dssp CHHHHHHHHHHHHHH--SSCEE-EEET----T-EEEEECCCTHHHHG-GGGCTTCEEEEEESSCCCHHHHHHTS----CC
T ss_pred chHHHHHHHHHHHhc--cCCeE-eccC----C-EEEEEECCHHHHHH-HHhccCceEEEEeeCCCcHHHHHHHh----CC
Confidence 457788888887654 34554 3221 2 89999999999999 88888 99999999999998888877 77
Q ss_pred CCCceE----EEEeCCCccCCCeeEEEeecCCCCcceeeeccccCChHHHHHHHHHHHHhhhcccCcEEEEeccHHHHHH
Q psy1221 529 PESRIH----HFSCGHVIPKENILPLILCSGPTNRKFDLTFENRTKGDTLKEIAMTITNLCTIVPKGMVCFFPSYDYEAI 604 (690)
Q Consensus 529 ~~~~~~----~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~I~~l~~~~~gg~lVfF~Sy~~l~~ 604 (690)
+.. .. .++++||| ++|..+++..+ +.++|.+|+ +++++++++.|.++++.+|||+|||||||.+|++
T Consensus 338 ~~~-~~~~~~~~~~~spf-~~~~~l~v~~~------~~~~~~~r~-~~~~~~l~~~i~~l~~~~~g~~lvlF~Sy~~l~~ 408 (551)
T 3crv_A 338 KRN-MLYLDVEREIQKRV-SGSYECYIGVD------VTSKYDMRS-DNMWKRYADYLLKIYFQAKANVLVVFPSYEIMDR 408 (551)
T ss_dssp CSC-EEEEEHHHHTTSCC-SCEEEEEEECS------CCCCTTTCC-HHHHHHHHHHHHHHHHHCSSEEEEEESCHHHHHH
T ss_pred CCc-cccccceeecCCcC-CCceEEEEeCC------CCCccccCC-HHHHHHHHHHHHHHHHhCCCCEEEEecCHHHHHH
Confidence 532 22 56789999 78877666533 333577776 6788999999999999999999999999999999
Q ss_pred HHHHHHhcCchhHHHHHhcCceEEEcCCCchhHHHHHHHhhhcccCCceEEEEeeCcccccccccC---CCcceEEEEEc
Q psy1221 605 VYNYMRDNHFIERIARIAKKKVVFREPKKTSEVDKVLSDYGTSVEKGGALMLSVIGGKLSEGLNFS---DDLGRCVVVMC 681 (690)
Q Consensus 605 v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~~~~~~~l~~f~~~~~~~~aiLfaV~gG~~sEGIDf~---g~~~r~Viivg 681 (690)
+++. ..++++.|+++. +.+++++.|++. +++|||||+||+|||||||+ |+.||+|||+|
T Consensus 409 v~~~--------------~~~~v~~q~~~~-~~~~~~~~~~~~---~~~vl~~v~gg~~~EGiD~~d~~g~~l~~viI~~ 470 (551)
T 3crv_A 409 VMSR--------------ISLPKYVESEDS-SVEDLYSAISAN---NKVLIGSVGKGKLAEGIELRNNDRSLISDVVIVG 470 (551)
T ss_dssp HHTT--------------CCSSEEECCSSC-CHHHHHHHTTSS---SSCEEEEESSCCSCCSSCCEETTEESEEEEEEES
T ss_pred HHHh--------------cCCcEEEcCCCC-CHHHHHHHHHhc---CCeEEEEEecceecccccccccCCcceeEEEEEc
Confidence 9862 136899998764 357799999744 67999999999999999999 99999999999
Q ss_pred CCCCCCC
Q psy1221 682 NSNPLRV 688 (690)
Q Consensus 682 LPfp~p~ 688 (690)
||||+|+
T Consensus 471 lPfp~~d 477 (551)
T 3crv_A 471 IPYPPPD 477 (551)
T ss_dssp CCCCCCS
T ss_pred CCCCCCC
Confidence 9999993
No 3
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=99.93 E-value=5e-26 Score=252.01 Aligned_cols=182 Identities=19% Similarity=0.362 Sum_probs=146.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHhhhhhhhccHHHHHHHHHHHHHHHHHHHhCCCceEEEecCCCCCCCCcceeEE
Q psy1221 5 KNLSPEVADKIGEYVLKHGHVDLVENLLADEFLAKSKQAKEGLEAIKLLFHYCQIYGLKDTIVFDLSLARGLDYYTGVIY 84 (690)
Q Consensus 5 ~~l~~~~~~~l~~l~~~~G~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~l~~~g~~~~i~~d~~~~r~~~YYtG~vF 84 (690)
++++++.++.|..++++ +..+.+.+.+. . ..+++++|++++++|+.+|+..++.|||+++||+|||||+||
T Consensus 232 ~~l~~~~~~~l~~~~~~-~~~~~l~~~l~-----~---~~~~~~~L~~l~~~l~~~gi~~~~~~D~~lvRgldYYTG~vF 302 (456)
T 3lc0_A 232 LGLEPTVVDAITTTLSL-KSIDEIAQRVG-----E---EHEAVKELRQFFEQVEAYGYGDWVLFDASVVRGLAYYTGIVF 302 (456)
T ss_dssp TTCCHHHHHHHHHHHTC-CSHHHHHHHHC-----T---TCHHHHHHHHHHHHHHHHTCGGGEEECTTCCCSCTTCCSEEE
T ss_pred cCCCHHHHHHHHHHhcc-CCHHHHHHHHh-----H---HHHHHHHHHHHHHHHHHcCCCceEEEecCccCCccccCCeEE
Confidence 57888888888888774 34554444432 1 245799999999999999998889999999999999999999
Q ss_pred EEEEcCCCcceEeeccchhhhhhhcCCCCCCCCccchhhhhhhhcccccccCcceeeeeHHHHHHHHHhhhhccCCcccC
Q psy1221 85 EAVLKDQAVGSVAGGGRYDNLVGMFDPKNKTTPCVAAKLLHEVQGLLETSCRSCREDIGVERLFSIIENRNAEQGVKVKT 164 (690)
Q Consensus 85 e~~~~~~~~~~i~~GGRYD~L~~~f~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~ 164 (690)
|+|...+.+++||+|||||+|++.||++ +++|| ||||+|+|||+.++++.+... ...
T Consensus 303 E~~~~~g~~~~I~~GGRYD~Lv~~fg~~-~~~Pa-------------------vGFaig~eRl~~~l~~~~~~~---~~~ 359 (456)
T 3lc0_A 303 EGFDREGKFRALCGGGRYDNLLTTYGSP-TPIPC-------------------AGFGFGDCVIVELLQEKRLLP---DIP 359 (456)
T ss_dssp EEEETTSCSSCSEEEEECSSHHHHTTCS-SCCCE-------------------EEEEEESSHHHHHHHHTTCCC---CCC
T ss_pred EEEECCCCcceEeecccHHHHHHHhCCC-CCCCE-------------------EEEEeEHHHHHHHHHhcCCCC---ccC
Confidence 9998755568999999999999999962 14665 559999999999998754321 223
Q ss_pred CceeEEEEeCCccchHHHHhHhhhhhcCCc-ccCCcccccHHHHHhhhhhcCCCC
Q psy1221 165 TSTQVYVASAQKNLVEPRMQLCHELWGGEK-TQEKPKLSGLQSFLKGVQENNPNL 218 (690)
Q Consensus 165 ~~~~v~v~~~~~~~~~~~~~l~~~L~~~~i-~~~~~~~~~Lk~~lk~~~kl~~~~ 218 (690)
..++|+|++.++.....++.+++.||+.++ ++.+....+++++++.+++.++..
T Consensus 360 ~~~~v~v~~~~~~~~~~a~~la~~LR~~Gi~ve~~~~~~slkkq~k~A~k~ga~~ 414 (456)
T 3lc0_A 360 HVVDDVVIPFDESMRPHALAVLRRLRDAGRSADIILDKKKVVQAFNYADRVGAVR 414 (456)
T ss_dssp CCEEEEEEESSGGGHHHHHHHHHHHHHTTCCEEECCSCCCHHHHHHHHHHTTEEE
T ss_pred CCCcEEEEEcCHHHHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHcCCCE
Confidence 568999999999888899999999999654 445666778999999999987643
No 4
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=99.92 E-value=1.3e-24 Score=242.95 Aligned_cols=197 Identities=57% Similarity=0.867 Sum_probs=164.8
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHhhhhhhhccHHHHHHHHHHHHHHHHHHHhCCCceEEEecCCCCCCCCccee
Q psy1221 3 GEKNLSPEVADKIGEYVLKHGHVDLVENLLADEFLAKSKQAKEGLEAIKLLFHYCQIYGLKDTIVFDLSLARGLDYYTGV 82 (690)
Q Consensus 3 ~~~~l~~~~~~~l~~l~~~~G~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~l~~~g~~~~i~~d~~~~r~~~YYtG~ 82 (690)
...+++++.++.|..++..+|+.+.+...++...+..+....+++++|+.++++|+.+|+..++.+|++++||+|||||+
T Consensus 213 ~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~g~~~~i~~d~~lvrgldYYtG~ 292 (464)
T 4g84_A 213 GEKGLAPEVADRIGDYVQQHGGVSLVEQLLQDPKLSQNKQALEGLGDLKLLFEYLTLFGIDDKISFDLSLARGLDYYTGV 292 (464)
T ss_dssp HTTCCCHHHHHHHHHHHTCEESHHHHHHHTTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCGGGEEEETTCCCCTTTCSSE
T ss_pred hhcCCCHHHHHHHHHHHHhcCCchHHHHHHhcccccccHHHHHHHHHHHHHHhHHHhhCCCcceeecccccCCCcCcCCe
Confidence 35788999999999999999999999888765556677888999999999999999999988899999999999999999
Q ss_pred EEEEEEcCCC---------cceEeeccchhhhhhhcCCCCCCCCccchhhhhhhhcccccccCcceeeeeHHHHHHHHHh
Q psy1221 83 IYEAVLKDQA---------VGSVAGGGRYDNLVGMFDPKNKTTPCVAAKLLHEVQGLLETSCRSCREDIGVERLFSIIEN 153 (690)
Q Consensus 83 vFe~~~~~~~---------~~~i~~GGRYD~L~~~f~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~ 153 (690)
|||++..+.. .++||+|||||+|++.|+..++++|| |||++|+|||+.++++
T Consensus 293 vFe~~~~~~~~~~~~~~~~~~~i~~GGRYD~L~~~~~~~g~~~pa-------------------vGfaigieRl~~~l~~ 353 (464)
T 4g84_A 293 IYEAVLLQTPAQAGEEPLGVGSVAAGGRYDGLVGMFDPKGRKVPC-------------------VGLSIGVERIFSIVEQ 353 (464)
T ss_dssp EEEEEEEECC-------EEEEEEEEEEECCSTGGGTSTTCCCCCE-------------------EEEEECHHHHHHHHHH
T ss_pred EEEEEECCcccccccCCcccceeccCCchhHHHHHhccCCCCCCC-------------------ccccccHHHHHHHHHH
Confidence 9999986521 24899999999999999754456675 5599999999999987
Q ss_pred hhhccCCcccCCceeEEEEeCCccchHHHHhHhhhhhcCCccc-CCc-ccccHHHHHhhhhhcCCCC
Q psy1221 154 RNAEQGVKVKTTSTQVYVASAQKNLVEPRMQLCHELWGGEKTQ-EKP-KLSGLQSFLKGVQENNPNL 218 (690)
Q Consensus 154 ~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~l~~~L~~~~i~~-~~~-~~~~Lk~~lk~~~kl~~~~ 218 (690)
.+......++...++|+|++.++.....+++++++||++++.. .+. ...+++++++.+++.+...
T Consensus 354 ~~~~~~~~~~~~~~~v~v~~~~~~~~~~a~~l~~~Lr~~Gi~ve~~~~~~~~l~~q~k~A~~~g~~~ 420 (464)
T 4g84_A 354 RLEALEEKIRTTETQVLVASAQKKLLEERLKLVSELWDAGIKAELLYKKNPKLLNQLQYCEEAGIPL 420 (464)
T ss_dssp HHHTTTCCCCSCCCCEEEECSSSSCHHHHHHHHHHHHHTTCCEECCSCSSCCHHHHHHHHHHHTCCE
T ss_pred hccccCcccccccceEEEEeCCHHHHHHHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHHCCCCE
Confidence 6543333445677899999999999999999999999976543 443 3457999999999987644
No 5
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=99.92 E-value=9e-25 Score=243.32 Aligned_cols=187 Identities=28% Similarity=0.452 Sum_probs=153.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHhhhhhh---hccHHHHHHHHHHHHHHHHHHHhCCCce----EEEecCCCCCC
Q psy1221 4 EKNLSPEVADKIGEYVLKHGHVDLVENLLADEFL---AKSKQAKEGLEAIKLLFHYCQIYGLKDT----IVFDLSLARGL 76 (690)
Q Consensus 4 ~~~l~~~~~~~l~~l~~~~G~~~~~~~~l~~~~~---~~~~~~~~~l~~l~~~~~~l~~~g~~~~----i~~d~~~~r~~ 76 (690)
++|++++.++.|..++.++|+.+.+.++++. ++ ..++.+.+++++|++++ |+.+ +..+ +.|||+++||+
T Consensus 228 ~~~l~~~~~~~l~~l~~~~g~~~~~l~~l~~-~~~~~~~~~~~~~~l~~l~~~~--l~~~-~~~~~~~~~~~D~~lvrgl 303 (465)
T 3net_A 228 KEGINPEQTQKIIDFVKIDGSVDDVLDKLKH-LSQTLPESEQFNLGVSELETVI--TGVR-NLGVPDKRFCIDLAIARGL 303 (465)
T ss_dssp HTTCCHHHHHHHHHHHTCCSCHHHHHHHHHH-HHHHSTTCHHHHHHHHHHHHHH--HHHH-HTTCCGGGEEECTTCCCCS
T ss_pred hcCCCHHHHHHHHHHHHhcCChHHHHHHHHH-hhhccccChHHHHHHHHHHHHH--HHHh-cccccCceEEEccCccCCC
Confidence 4689999999999999999998777777753 34 77888999999999998 6665 5456 99999999999
Q ss_pred CCcceeEEEEEEcCC-CcceEeeccchhhhhhhc-CCCCCCCCccchhhhhhhhcccccccCcceeeeeHHHHHHHHHhh
Q psy1221 77 DYYTGVIYEAVLKDQ-AVGSVAGGGRYDNLVGMF-DPKNKTTPCVAAKLLHEVQGLLETSCRSCREDIGVERLFSIIENR 154 (690)
Q Consensus 77 ~YYtG~vFe~~~~~~-~~~~i~~GGRYD~L~~~f-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~ 154 (690)
+||||+|||+++.+. .+++||+|||||+|++.| |+ + +|| |||+||+|||+.++.+.
T Consensus 304 dYYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~f~g~--~-~pa-------------------vGfaiGieRli~~L~e~ 361 (465)
T 3net_A 304 NYYTGTVYETTLIGHEALGSICSGGRYEELVGTFIGE--K-MPG-------------------VGISIGLTRLISRLLKA 361 (465)
T ss_dssp SSEEEEEEEEEETTCGGGCCSSEEEEESSSSGGGTCS--C-CCE-------------------EEEEEEHHHHHHHHHHT
T ss_pred cccCceEEEEEECCCCccceecccccHHHHhhhhcCC--C-Cce-------------------eeeeccHHHHHHHHHHc
Confidence 999999999999873 457999999999999977 53 2 665 55999999999999876
Q ss_pred hhccCCcccCCceeEEEEeCCccchHHHHhHhhhhhcCCc-ccCCcccccHHHHHhhhhhcCCCC
Q psy1221 155 NAEQGVKVKTTSTQVYVASAQKNLVEPRMQLCHELWGGEK-TQEKPKLSGLQSFLKGVQENNPNL 218 (690)
Q Consensus 155 ~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~l~~~L~~~~i-~~~~~~~~~Lk~~lk~~~kl~~~~ 218 (690)
+..+ ..+..+++|+|++.++.....++++++.||+.++ +..+....++++.++.+++.+...
T Consensus 362 g~~p--~~~~~p~~V~Vi~~~~~~~~~A~~la~~LR~~Gi~ve~d~~~~sl~~q~k~A~~~g~p~ 424 (465)
T 3net_A 362 GILN--TLPPTPAQVVVVNMQDELMPTYLKVSQQLRQAGLNVITNFEKRQLGKQFQAADKQGIRF 424 (465)
T ss_dssp TSSC--CCCSCSCCEEECCSCGGGHHHHHHHHHHHHHTTCCEEECCSCCCHHHHHHHHHHHTCCE
T ss_pred CCCC--CcCCCCCeEEEEEcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHcCCCE
Confidence 4311 1134578999999998888899999999999654 444666678999999999887544
No 6
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=99.92 E-value=1.7e-24 Score=244.76 Aligned_cols=196 Identities=57% Similarity=0.861 Sum_probs=162.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHhhhhhhhccHHHHHHHHHHHHHHHHHHHhCCCceEEEecCCCCCCCCcceeE
Q psy1221 4 EKNLSPEVADKIGEYVLKHGHVDLVENLLADEFLAKSKQAKEGLEAIKLLFHYCQIYGLKDTIVFDLSLARGLDYYTGVI 83 (690)
Q Consensus 4 ~~~l~~~~~~~l~~l~~~~G~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~l~~~g~~~~i~~d~~~~r~~~YYtG~v 83 (690)
..+++++.++.|..++..+|+.+.+...++...+..+..+.+++++|+.++++|+.+|+..+|.+||+++||+|||||+|
T Consensus 267 ~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~g~~~~i~~d~~lvrgldYYtG~v 346 (517)
T 4g85_A 267 EKGLAPEVADRIGDYVQQHGGVSLVEQLLQDPKLSQNKQALEGLGDLKLLFEYLTLFGIDDKISFDLSLARGLDYYTGVI 346 (517)
T ss_dssp HTCCCHHHHHHHHHHHHCCBSHHHHHHHHHCHHHHTCHHHHHHHHHHHHHHHHHHHHTCGGGEEECTTCCCCTTTCSSEE
T ss_pred hcCCCHHHHHHHHHHHHhcCCchHHHHHHhcccccccHHHHHHHHHHHHHHHHHHhhCCCcceeeccccccCCcccCCeE
Confidence 46789999999999999999999888887655566778889999999999999999999889999999999999999999
Q ss_pred EEEEEcCC---------CcceEeeccchhhhhhhcCCCCCCCCccchhhhhhhhcccccccCcceeeeeHHHHHHHHHhh
Q psy1221 84 YEAVLKDQ---------AVGSVAGGGRYDNLVGMFDPKNKTTPCVAAKLLHEVQGLLETSCRSCREDIGVERLFSIIENR 154 (690)
Q Consensus 84 Fe~~~~~~---------~~~~i~~GGRYD~L~~~f~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~ 154 (690)
||++..+. ..++||+|||||+|++.|+..++.+|| |||++|+|||+.++++.
T Consensus 347 FE~~~~~~~~~~~~~~~~~~~i~~GGRYD~Lv~~f~~~G~~~pa-------------------vGfa~gierl~~~le~~ 407 (517)
T 4g85_A 347 YEAVLLQTPAQAGEEPLGVGSVAAGGRYDGLVGMFDPKGRKVPC-------------------VGLSIGVERIFSIVEQR 407 (517)
T ss_dssp EEEEEC-------------CCSEEEEECHHHHHTTSSSCCCCCE-------------------EEEEECHHHHHHHHHHH
T ss_pred EEEEECCcccccccCCcccceecCCCchhHHHHHhccCCCCCCc-------------------ccccchHHHHHHHHHHh
Confidence 99998652 125899999999999999643466775 55999999999999876
Q ss_pred hhccCCcccCCceeEEEEeCCccchHHHHhHhhhhhcCCccc-CCc-ccccHHHHHhhhhhcCCCC
Q psy1221 155 NAEQGVKVKTTSTQVYVASAQKNLVEPRMQLCHELWGGEKTQ-EKP-KLSGLQSFLKGVQENNPNL 218 (690)
Q Consensus 155 ~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~l~~~L~~~~i~~-~~~-~~~~Lk~~lk~~~kl~~~~ 218 (690)
........+...++|+|++.++.....+++++++||++++.. .+. ...+++++++.+++.+...
T Consensus 408 ~~~~~~~~~~~~~~V~v~~~~~~~~~~a~~l~~~Lr~~Gi~ve~~~~~~~~l~~q~k~A~~~g~~~ 473 (517)
T 4g85_A 408 LEALEEKIRTTETQVLVASAQKKLLEERLKLVSELWDAGIKAELLYKKNPKLLNQLQYCEEAGIPL 473 (517)
T ss_dssp HHHTTCCCCSCCCCEEEEESSSSCHHHHHHHHHHHHHTTCCEEECSSSSCCHHHHHHHHHHHCCCE
T ss_pred ccccCccccCCCCEEEEEeCCHHHHHHHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHHCCCCE
Confidence 433223345677999999999999999999999999976654 343 3457999999999987644
No 7
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=99.91 E-value=2.8e-24 Score=234.18 Aligned_cols=159 Identities=19% Similarity=0.323 Sum_probs=130.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHhhhhhhhccHHHHHHHHHHHHHHHHHHHhCCCceEEEecCCCCCCCCcceeE
Q psy1221 4 EKNLSPEVADKIGEYVLKHGHVDLVENLLADEFLAKSKQAKEGLEAIKLLFHYCQIYGLKDTIVFDLSLARGLDYYTGVI 83 (690)
Q Consensus 4 ~~~l~~~~~~~l~~l~~~~G~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~l~~~g~~~~i~~d~~~~r~~~YYtG~v 83 (690)
+++++++.++.|..++.+.|+.+.+.++ +. +..++.+.+++++|++++++|+.+|+..++.|||+++||++||||+|
T Consensus 206 ~~~l~~~~~~~l~~l~~~~g~~~~l~~~-~~--l~~~~~~~~~l~~l~~l~~~L~~~gi~~~~~~D~~lvRgldYYTG~v 282 (400)
T 3od1_A 206 SLNLSTIDKSRLMNLLSLRGGRAAIEEA-RG--LIQTEKGKTALAEMTKLYEVLESYGASEYVKFDLTLVLHMSYYTGVV 282 (400)
T ss_dssp HSSSCHHHHHHHHHGGGCEESHHHHHHH-HT--TCCSHHHHHHHHHHHHHHHHHHHTTCGGGEEEETTCCSCSSSCCSEE
T ss_pred hcCCCHHHHHHHHHHHhccCCHHHHHHH-Hh--hhcChhhHHHHHHHHHHHHHHHHcCCCceEEEeCCccCCCcccCCeE
Confidence 4689999999999999999998855444 32 45567889999999999999999999888999999999999999999
Q ss_pred EEEEEcCCCcceEeeccchhhhhhhcCCCCCCCCccchhhhhhhhcccccccCcceeeeeHHHHHHHHHhhhhccCCccc
Q psy1221 84 YEAVLKDQAVGSVAGGGRYDNLVGMFDPKNKTTPCVAAKLLHEVQGLLETSCRSCREDIGVERLFSIIENRNAEQGVKVK 163 (690)
Q Consensus 84 Fe~~~~~~~~~~i~~GGRYD~L~~~f~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~ 163 (690)
||++.++. ..+||+|||||+|++.||+ ++|| ||||+|+|||+.+++..+..
T Consensus 283 Fe~~~~~~-g~~i~~GGRYD~L~~~fG~---~~pa-------------------vGfaiglerL~~~l~~~~~~------ 333 (400)
T 3od1_A 283 FEGYGNRL-GVPLCSGGRYDELLSKFHR---PAQA-------------------TGFGVRIDLLVEALNGEIIS------ 333 (400)
T ss_dssp EEEEETTC-SSEEEEEEECTTHHHHTTC---CCCE-------------------EEEEEEHHHHHHHHCC----------
T ss_pred EEEEECCC-CCeeecccccchhhhccCC---CCCE-------------------EEEEeeHHHHHHHHHhcCCC------
Confidence 99999874 3599999999999999985 3675 55999999999999865421
Q ss_pred CCceeEEEEeCCccchHHHHhHhhhhhcCCcc
Q psy1221 164 TTSTQVYVASAQKNLVEPRMQLCHELWGGEKT 195 (690)
Q Consensus 164 ~~~~~v~v~~~~~~~~~~~~~l~~~L~~~~i~ 195 (690)
...++|||+ .++.....++.++++||+.++.
T Consensus 334 ~~~~~v~v~-~~~~~~~~a~~~a~~LR~~G~~ 364 (400)
T 3od1_A 334 NGHEQTCIL-FSNERRFEAIELARKKRANGEA 364 (400)
T ss_dssp --CCCEEEE-ECGGGHHHHHHHHHHHHTTTCC
T ss_pred CCCCeEEEE-ECcHHHHHHHHHHHHHHHCCCE
Confidence 112347766 5666788899999999997654
No 8
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.88 E-value=2.1e-22 Score=228.86 Aligned_cols=184 Identities=18% Similarity=0.257 Sum_probs=120.5
Q ss_pred ChHHHHHHHHHHHhccCCCceEEEEECCCCCccEEEEEecCchhhHHHHHhhcceEEEeCCCCCch----hhHHHHhhcc
Q psy1221 450 NPMLSVVTFLESLVNKNEDGRILVTKNPELSKSHIKYILLNPANHFTDIVQDARSIIVAGGTMEPV----SEFKDQLFGS 525 (690)
Q Consensus 450 s~l~~l~~fl~~l~~~~~~~~i~~~~~~~~~~~~l~~~~ldp~~~~~~~~~~~~svil~SgTLsP~----~~f~~~l~~~ 525 (690)
+.+..+.+|+. . ++.++|. . ..|.+.|.+....+.+.....+++|||||||+|. ..|
T Consensus 279 ~~l~~~l~~~~---~---~~~~~~~-~-----~~l~~~P~~~~~~l~~~~~~~~~~IltSATL~p~~~~~~~f------- 339 (540)
T 2vl7_A 279 SSLKSLLKFVE---M---KGDLYNC-N-----GSLVKVPSDVNQLIEDALNVKTFKVLMSGTLPESLTLTNSY------- 339 (540)
T ss_dssp CHHHHHHHHHH---S---CCEEEEE-T-----TEEEEECSCHHHHHHHHTCCSSCEEEEESSCCTTCCCTTEE-------
T ss_pred HHHHHHHHHHH---h---CCCEEEE-C-----CeEEEehHHHHHHHHHhcCccCCeEEEcccCCCCcccchhc-------
Confidence 34555555532 2 4667885 1 2566666665555554322344569999999993 222
Q ss_pred CCCCCCceEEEEeCCCccCCCeeEEEeecCCCCcceeeeccccCChHHHHHHHHHHHHhhhcccCcEEEEeccHHHHHHH
Q psy1221 526 LGVPESRIHHFSCGHVIPKENILPLILCSGPTNRKFDLTFENRTKGDTLKEIAMTITNLCTIVPKGMVCFFPSYDYEAIV 605 (690)
Q Consensus 526 ~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~I~~l~~~~~gg~lVfF~Sy~~l~~v 605 (690)
.....+++... ..++. ..+.++|..|++ .+ +++++.|.+++...|||+|||||||.+|+++
T Consensus 340 ---------~~~~~~~~g~~--~~~~~------~~l~s~f~~r~~-~~-~~~~~~l~~~~~~~~g~~lvff~S~~~~~~v 400 (540)
T 2vl7_A 340 ---------KIVVNESYGRG--EYYYC------PNVTSELRKRNS-NI-PIYSILLKRIYENSSKSVLVFFPSYEMLESV 400 (540)
T ss_dssp ---------EEECCCC-CCC--EEEEC------TTCCCCGGGHHH-HH-HHHHHHHHHHHHTCSSEEEEEESCHHHHHHH
T ss_pred ---------CCchhheecCC--cceec------cccCCCcccccC-HH-HHHHHHHHHHHHhCCCCEEEEeCCHHHHHHH
Confidence 01123333211 11221 345667887763 45 8999999999999999999999999999999
Q ss_pred HHHHHhcCchhHHHHHhcCceEEEcCCCchhHHHHHHHhhhcccCCceEEEEeeCcccccccccCCC--cceEEEEEcCC
Q psy1221 606 YNYMRDNHFIERIARIAKKKVVFREPKKTSEVDKVLSDYGTSVEKGGALMLSVIGGKLSEGLNFSDD--LGRCVVVMCNS 683 (690)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~i~~E~~~~~~~~~~l~~f~~~~~~~~aiLfaV~gG~~sEGIDf~g~--~~r~ViivgLP 683 (690)
++.|+. ++++.|+.+ .++++++++|++ +++|||||++|+|||||||+|+ .+|+|||+|||
T Consensus 401 ~~~l~~-------------~~~~~q~~~-~~~~~~l~~f~~----~~~il~~V~~~~~~EGiD~~~~~~~~~~Vii~~lP 462 (540)
T 2vl7_A 401 RIHLSG-------------IPVIEENKK-TRHEEVLELMKT----GKYLVMLVMRAKESEGVEFREKENLFESLVLAGLP 462 (540)
T ss_dssp HTTCTT-------------SCEEESTTT-CCHHHHHHHHHT----SCCEEEEEC---------------CEEEEEEESCC
T ss_pred HHHhcc-------------CceEecCCC-CcHHHHHHHHhc----CCeEEEEEecCceecceecCCCcccccEEEEECCC
Confidence 988862 568888875 568899999987 4699999999999999999998 89999999999
Q ss_pred CCCCCC
Q psy1221 684 NPLRVP 689 (690)
Q Consensus 684 fp~p~d 689 (690)
||+|+|
T Consensus 463 f~~~~d 468 (540)
T 2vl7_A 463 YPNVSD 468 (540)
T ss_dssp CCCTTS
T ss_pred CCCCCC
Confidence 999965
No 9
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=99.84 E-value=3.2e-21 Score=206.23 Aligned_cols=123 Identities=21% Similarity=0.374 Sum_probs=105.3
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHhhhhhhhccHHHHHHHHHHHHHHHHHHHhCCCceEEEecCCCCCCCCccee
Q psy1221 3 GEKNLSPEVADKIGEYVLKHGHVDLVENLLADEFLAKSKQAKEGLEAIKLLFHYCQIYGLKDTIVFDLSLARGLDYYTGV 82 (690)
Q Consensus 3 ~~~~l~~~~~~~l~~l~~~~G~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~l~~~g~~~~i~~d~~~~r~~~YYtG~ 82 (690)
++++|+++.++.|..++++ |+.+.+.++ . . +..++.+.+++++|++++++|+.+| ++.|||+++||++||||+
T Consensus 216 ~~~~l~~~~~~~l~~l~~~-g~~~~l~~~-~-~-l~~~~~~~~~l~~l~~l~~~L~~~g---~~~~D~~lvrgldYYtG~ 288 (344)
T 1z7m_A 216 EKNNFSKELRGLLKEIFIT-NELSRLENL-V-T-NTKDDVLISSFDQLKEFSEKLSMIK---PIIIDLGMVPKMDYYTDL 288 (344)
T ss_dssp TTSCCCHHHHHHHHHHTTC-CCHHHHHHH-H-H-HTTCHHHHHHHHHHHHHHHHHTTTS---CCEECTTCCCSSTTCCSE
T ss_pred HhcCCCHHHHHHHHHHHhc-CCHHHHHHH-H-H-hhcchhhHHHHHHHHHHHHHHhhCC---CEEEeCCCCCCCccCCCe
Confidence 4578999999999999999 987655544 2 2 4455678999999999999999988 599999999999999999
Q ss_pred EEEEEEcCCCcceEeeccchhhhhhhcCCCCCCCCccchhhhhhhhcccccccCcceeeeeHHHHHHHHHhhh
Q psy1221 83 IYEAVLKDQAVGSVAGGGRYDNLVGMFDPKNKTTPCVAAKLLHEVQGLLETSCRSCREDIGVERLFSIIENRN 155 (690)
Q Consensus 83 vFe~~~~~~~~~~i~~GGRYD~L~~~f~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~ 155 (690)
|||++..+ ...+||+|||||+|++.|| +.+|| ||||+|+|||+.+++..+
T Consensus 289 vFe~~~~~-~~~~i~~GGRYD~L~~~fg---~~~pa-------------------vGfaiglerl~~~l~~~~ 338 (344)
T 1z7m_A 289 MFKAYSSA-ANQPILSGGRYDQLLSNFQ---EEAFA-------------------IGFCCHMDTILKALERQE 338 (344)
T ss_dssp EEEEEETT-EEEEEEEEEECHHHHHTSS---SCCCC-------------------EEEEEEHHHHHHHHHHHH
T ss_pred EEEEEECC-CCCeEeeCccHHHHHHHhC---CCCCe-------------------EEEEEEHHHHHHHHHhcc
Confidence 99999976 3469999999999999998 35675 559999999999998754
No 10
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=99.84 E-value=6.9e-21 Score=210.76 Aligned_cols=179 Identities=20% Similarity=0.341 Sum_probs=141.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHhhhhhhhccHHHHHHHHHHHHHHHHHHHhCCCceEEEecCCCCCCCCcceeEE
Q psy1221 5 KNLSPEVADKIGEYVLKHGHVDLVENLLADEFLAKSKQAKEGLEAIKLLFHYCQIYGLKDTIVFDLSLARGLDYYTGVIY 84 (690)
Q Consensus 5 ~~l~~~~~~~l~~l~~~~G~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~l~~~g~~~~i~~d~~~~r~~~YYtG~vF 84 (690)
.+++.+.++.+.+++...|+.+. ...++ +.+..++++++++.++|+.+|+. ++.+|++++|+++||||++|
T Consensus 205 ~~l~~~~~~~~~~~~~~~~~~~~-l~~~~-------~~~~~~~~~l~~~~~~l~~~g~~-~i~~D~~l~rgldYYtg~vF 275 (434)
T 1wu7_A 205 AGIGEDGVSMIADLCSGTRGIDE-MARIT-------GKSSEEIARMAAVEDLLASYGVK-NVRYDFSIVRGLSYYTGIVF 275 (434)
T ss_dssp TTCCHHHHHHHHHHHHSCBCHHH-HHHHT-------TCCCHHHHHHHHHHHHHHHTTCC-CCEECTTCCTTTTTCSSEEE
T ss_pred CCCCHHHHHHHHHHHHhCCCHHH-HHHHH-------hhHHHHHHHHHHHHHHHHHcCCC-EEEECCCcccCccccCCeEE
Confidence 46677777777777777677544 33322 12347899999999999999986 79999999999999999999
Q ss_pred EEEEcCCCcceEeeccchhhhhhhcCCCCCCCCccchhhhhhhhcccccccCcceeeeeHHHHHHHHHhhhhccCCcc-c
Q psy1221 85 EAVLKDQAVGSVAGGGRYDNLVGMFDPKNKTTPCVAAKLLHEVQGLLETSCRSCREDIGVERLFSIIENRNAEQGVKV-K 163 (690)
Q Consensus 85 e~~~~~~~~~~i~~GGRYD~L~~~f~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~-~ 163 (690)
|++...+..++||+|||||+|++.||+ +.+|+ +||+||+|||+.++.+.+. + +
T Consensus 276 e~~~~~g~~~~v~~GGRYD~li~~fgg--~~~pa-------------------~Gf~igveRl~~~l~e~~~-----~~p 329 (434)
T 1wu7_A 276 EAYDRSGQFRAILGGGRYDNLASLMSG--ESVPA-------------------VGFGMGDAVISLLLKRENV-----QIP 329 (434)
T ss_dssp EEEETTSSCSCSSEEEECTTHHHHHHS--CCCCE-------------------EEEEEEHHHHHHHHHHTTC-----CCC
T ss_pred EEEECCCCcCeeeecccHHHHHHHhCC--CCCCe-------------------EEEEEcHHHHHHHHHhcCC-----ccC
Confidence 999874456799999999999999984 45665 5599999999999987542 2 2
Q ss_pred CCceeEEEEeCCccchHHHHhHhhhhhcCCc-ccCCcccccHHHHHhhhhhcCCCC
Q psy1221 164 TTSTQVYVASAQKNLVEPRMQLCHELWGGEK-TQEKPKLSGLQSFLKGVQENNPNL 218 (690)
Q Consensus 164 ~~~~~v~v~~~~~~~~~~~~~l~~~L~~~~i-~~~~~~~~~Lk~~lk~~~kl~~~~ 218 (690)
..+++|+|++.++.....+++++++||..++ +..+....++...++.+++.+...
T Consensus 330 ~~p~~v~v~~~~~~~~~~a~~l~~~Lr~~Gi~v~~d~~~~~~~~~~~~a~~~g~~~ 385 (434)
T 1wu7_A 330 REKKSVYICRVGKINSSIMNEYSRKLRERGMNVTVEIMERGLSAQLKYASAIGADF 385 (434)
T ss_dssp CSSCEEEEEEESSCCHHHHHHHHHHHHTTTCEEEECCSCCCHHHHHHHHHHTTCSE
T ss_pred CCCCcEEEEEcChHHHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHCCCCE
Confidence 2458999999888788899999999999654 444555578999999998877533
No 11
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=99.82 E-value=4.2e-20 Score=205.60 Aligned_cols=148 Identities=22% Similarity=0.351 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCceEEEecCCCCCCCCcceeEEEEEEcC-CCcceEeeccchhhhhhhcCCCCCCCCccchh
Q psy1221 44 KEGLEAIKLLFHYCQIYGLKDTIVFDLSLARGLDYYTGVIYEAVLKD-QAVGSVAGGGRYDNLVGMFDPKNKTTPCVAAK 122 (690)
Q Consensus 44 ~~~l~~l~~~~~~l~~~g~~~~i~~d~~~~r~~~YYtG~vFe~~~~~-~~~~~i~~GGRYD~L~~~f~~~~~~~~~~g~~ 122 (690)
.+++++++.|.++|+.+|++ +.+||+++||++||||+|||++.++ +.+++|++|||||+|++.||+ +.+|+
T Consensus 258 ~~~~~~l~~l~~~L~~~gi~--~~~d~~lvRgl~YYtg~vFe~~~~~~g~~~tI~~GGRYD~Lv~~~g~--~~~Pa---- 329 (467)
T 4e51_A 258 DVSRAHFEGLQRLLKANNVP--FTINPRLVRGLDYYNLTVFEWVTDKLGAQGTVAAGGRYDPLIEQLGG--KPTAA---- 329 (467)
T ss_dssp HHHHHHHHHHHHHHHHTTCC--EEECTTCCCSCTTCCSEEEEEEECC----CEEEEEEECTHHHHHTTS--SCCCE----
T ss_pred HHHHHHHHHHHHHHHHcCCe--EEEcCccccCccccCCeEEEEEECCCCCcceecCCCcHHHHHHHhCC--CCCCc----
Confidence 35778899999999999997 9999999999999999999999986 345799999999999999996 45775
Q ss_pred hhhhhhcccccccCcceeeeeHHHHHHHHHhhhhccCCcccCCceeEEEEeCCccchHHHHhHhhhhhcCCc-ccCCcc-
Q psy1221 123 LLHEVQGLLETSCRSCREDIGVERLFSIIENRNAEQGVKVKTTSTQVYVASAQKNLVEPRMQLCHELWGGEK-TQEKPK- 200 (690)
Q Consensus 123 ~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~l~~~L~~~~i-~~~~~~- 200 (690)
|||++++|||+.++.+.+.. +...+++|+|++.++.....++++++.||..++ ++.+..
T Consensus 330 ---------------vGfa~gleRl~~~l~~~~~~----~~~~p~~V~Vip~~~~~~~~A~~ia~~LR~~Gi~ve~d~~~ 390 (467)
T 4e51_A 330 ---------------CGWAMGIERILELLKEEHLV----PEQEGVDVYVVHQGDAAREQAFIVAERLRDTGLDVILHCSA 390 (467)
T ss_dssp ---------------EEEEEEHHHHHHHHHHTTCC----CCCCCCSEEEEECSHHHHHHHHHHHHHHHHTTCCEEECCCT
T ss_pred ---------------eeehHHHHHHHHHHHhcCCc----ccCCCCeEEEEEcChHHHHHHHHHHHHHHHcCCeEEEEccc
Confidence 45999999999999875421 123568999999998888899999999999654 445665
Q ss_pred ---cccHHHHHhhhhhcCCCC
Q psy1221 201 ---LSGLQSFLKGVQENNPNL 218 (690)
Q Consensus 201 ---~~~Lk~~lk~~~kl~~~~ 218 (690)
..+++++++.+++.+...
T Consensus 391 ~~~~~sl~kq~~~A~~~g~~~ 411 (467)
T 4e51_A 391 DGAGASFKSQMKRADASGAAF 411 (467)
T ss_dssp TSSCCCHHHHHHHHHHTTCSE
T ss_pred ccccCCHHHHHHHHHHcCCCE
Confidence 689999999999887644
No 12
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=99.82 E-value=1.1e-20 Score=203.84 Aligned_cols=119 Identities=29% Similarity=0.444 Sum_probs=96.2
Q ss_pred HHHHHHHHHhcC-----------CHHHHHHHhhhhhhhccHHH----HHHHHHHHHHHHHHHHhCC-CceEEEecCCCCC
Q psy1221 12 ADKIGEYVLKHG-----------HVDLVENLLADEFLAKSKQA----KEGLEAIKLLFHYCQIYGL-KDTIVFDLSLARG 75 (690)
Q Consensus 12 ~~~l~~l~~~~G-----------~~~~~~~~l~~~~~~~~~~~----~~~l~~l~~~~~~l~~~g~-~~~i~~d~~~~r~ 75 (690)
++.|..++++.| +...+.+.++. +..++.. .+++++|++++++|+.+|+ ..++.|||+++||
T Consensus 233 ~~~l~~l~~l~g~~~~~~~~~~~~~~~~l~~~~~--l~~~~~~~~~~~~al~~l~~l~~~L~~~gi~~~~i~~D~~lvRg 310 (373)
T 3rac_A 233 VDLLANLLTWSPAERDAAKRSREASDRELEALLR--DAVDPRAAADVRDAWRYLCRLAEALHDSGLASDVVTFDLALHRE 310 (373)
T ss_dssp SCHHHHHHHBCCCSSCTTSBCHHHHHHHHHHHHT--TCSCHHHHHHHHHHHHHHHHHHHHHHHHTCCTTTEEECTTCCCS
T ss_pred HHHHHHHHHHhCCccccccccccccHHHHHHHHh--hhcCcccchhHHHHHHHHHHHHHHHHHcCCCCceEEEeCCccCC
Confidence 345567778888 12334444432 3445555 9999999999999999999 6779999999999
Q ss_pred CCCcceeEEEEEEcCCCcceEeeccchhhhhhhcCCCCCCCCccchhhhhhhhcccccccCcceeeeeHHHHHHHHHhhh
Q psy1221 76 LDYYTGVIYEAVLKDQAVGSVAGGGRYDNLVGMFDPKNKTTPCVAAKLLHEVQGLLETSCRSCREDIGVERLFSIIENRN 155 (690)
Q Consensus 76 ~~YYtG~vFe~~~~~~~~~~i~~GGRYD~L~~~f~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~ 155 (690)
++||||+|||++.++. ..+||+|||||+|++.||+ ++|| ||||+|+|||+.++++.+
T Consensus 311 ldYYTG~vFe~~~~~~-g~~i~~GGRYD~L~~~fG~---~~pA-------------------vGFaiglerL~~~l~~~~ 367 (373)
T 3rac_A 311 LDYYTGLVFEMFAPGV-GAPIAQGGRYDELLAQFGA---GAPA-------------------VGFAFEVERVMAVLEAQE 367 (373)
T ss_dssp CTTCCSEEEEEECTTC-SSCSEEEEECTTTTGGGTC---CCCC-------------------EEEEEEHHHHHHHHHHHH
T ss_pred CCccCCeEEEEEECCC-CCeEeecccccHHHHhhCC---CCCe-------------------EEEEEEHHHHHHHHHhcc
Confidence 9999999999999874 3599999999999999985 3675 559999999999998764
No 13
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.79 E-value=6.9e-19 Score=202.64 Aligned_cols=144 Identities=19% Similarity=0.292 Sum_probs=117.8
Q ss_pred cCcHHHHHHHHHHHhccCCCCeEEEEeCCCCCccEEEEEecChhHHHHHHHhcccEEEEecccCCChhhhHHhhccCCCC
Q psy1221 239 RNPMLSVVTFLESLVNKNEDGRILVTKNPELSKSHIKYILLNPANHFTDIVQDARSIIVAGGTMEPVSEFKDQLFGSLGV 318 (690)
Q Consensus 239 ~~~l~~~~~fl~~l~~~~~~~~v~~~~~~~~~~~~l~~~~ldps~~l~~~~~~~~svIl~SGTL~P~~~~~~~L~~~~g~ 318 (690)
.+.++.+.+|+..|...+++++++|.+.. +..+|+++|+||+..|+ ++ +++++|||||||+|+++|.+.| |+
T Consensus 326 ~~~~~~~~~fl~~~~~~~~~~~~~~~~~~--~~~~l~~~~l~~~~~l~-~~-~~~~~il~SaTL~p~~~~~~~l----Gl 397 (620)
T 4a15_A 326 FSYCSSVASRIIAFSDQDEEKYAAILSPE--DGGYMQAACLDPSGILE-VL-KESKTIHMSGTLDPFDFYSDIT----GF 397 (620)
T ss_dssp CCHHHHHHHHHHHHHTSCTTTEEEEEECG--GGCEEEEEECCTHHHHG-GG-GGSEEEEEESSCCSHHHHHHHH----CC
T ss_pred ccHHHHHHHHHHHHhhcCCCCEEEEEEeC--CCcEEEEEECCHHHHHH-HH-hCCeEEEEccCCCcHHHHHHHh----CC
Confidence 34578899999988433334888888753 24789999999999999 99 9999999999999999999999 88
Q ss_pred CCCceEeeecCCccCCCCeeEEEeecCCCCceeEEeecccCChHHHHHHHHHHHHHHhccCCeEEEEcCccchHHHHHhh
Q psy1221 319 PESRIHHFSCGHVIPKENILPLILCSGPTNRKFDLTFENRTKGDTLKEIAMTITNLCTIVPKGMVCFFPSYDYEAIVYNY 398 (690)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~y~~R~~~~~~~~l~~~i~~~~~~~pgg~lvFFpSY~~l~~v~~~ 398 (690)
+ ...++.+|||+.+|..+++++ .+.++|+.|+ +++++.+++.|.++++.+|||+|||||||.+|+++++.
T Consensus 398 ~---~~~~~~~spf~~~~~~~~~~~------~~~~~~~~r~-~~~~~~~~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~ 467 (620)
T 4a15_A 398 E---IPFKKIGEIFPPENRYIAYYD------GVSSKYDTLD-EKELDRMATVIEDIILKVKKNTIVYFPSYSLMDRVENR 467 (620)
T ss_dssp C---CCEEECCCCSCGGGEEEEEEC------CC-------C-HHHHHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHTSS
T ss_pred C---ceeeecCCCCCHHHeEEEEeC------CCCCcCCCCC-HHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHH
Confidence 6 467889999998898888764 3556788886 67789999999999999999999999999999999997
Q ss_pred cC
Q psy1221 399 MP 400 (690)
Q Consensus 399 ~~ 400 (690)
|+
T Consensus 468 l~ 469 (620)
T 4a15_A 468 VS 469 (620)
T ss_dssp CC
T ss_pred HH
Confidence 73
No 14
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=99.78 E-value=1.3e-18 Score=191.79 Aligned_cols=148 Identities=20% Similarity=0.273 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHHHHHhCCCceEEEecCCCCCCCCcceeEEEEEEcC-CCcceEeeccchhhhhhhcCCCCCCCCccchh
Q psy1221 44 KEGLEAIKLLFHYCQIYGLKDTIVFDLSLARGLDYYTGVIYEAVLKD-QAVGSVAGGGRYDNLVGMFDPKNKTTPCVAAK 122 (690)
Q Consensus 44 ~~~l~~l~~~~~~l~~~g~~~~i~~d~~~~r~~~YYtG~vFe~~~~~-~~~~~i~~GGRYD~L~~~f~~~~~~~~~~g~~ 122 (690)
.+++++++++.++++.+|+. +.+|++++||++||||++||++..+ +..++||+|||||+|++.||+ +..|+
T Consensus 231 ~~~~~~l~~~~~~l~~~g~~--i~~D~~l~rg~~YYtg~vFe~~~~~~g~~~~v~~GGRYd~l~~~fgg--~~~pa---- 302 (421)
T 1h4v_B 231 EEARAHLKEVERHLERLSVP--YELEPALVRGLDYYVRTAFEVHHEEIGAQSALGGGGRYDGLSELLGG--PRVPG---- 302 (421)
T ss_pred HHHHHHHHHHHHHHHHcCCe--EEEecccccchhhhcCeEEEEEecCCCCcCccccCCcHHHHHHHhCC--CCCCe----
Confidence 46788899999999999974 9999999999999999999999865 345699999999999999985 45665
Q ss_pred hhhhhhcccccccCcceeeeeHHHHHHHHHhhhhccCCcccCCceeEEEEeCCccchHHHHhHhhhhhcCCcc-cCCccc
Q psy1221 123 LLHEVQGLLETSCRSCREDIGVERLFSIIENRNAEQGVKVKTTSTQVYVASAQKNLVEPRMQLCHELWGGEKT-QEKPKL 201 (690)
Q Consensus 123 ~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~l~~~L~~~~i~-~~~~~~ 201 (690)
+||+||+|||+.++.+.+..+ ++..+++|+|++.++.....+++++++||.. +. ..+...
T Consensus 303 ---------------~Gf~igieRl~~~l~e~~~~~---~~~~p~~v~i~~~~~~~~~~a~~l~~~Lr~~-i~v~~d~~~ 363 (421)
T 1h4v_B 303 ---------------VGFAFGVERVALALEAEGFGL---PEEKGPDLYLIPLTEEAVAEAFYLAEALRPR-LRAEYALAP 363 (421)
T ss_pred ---------------EEEeecHHHHHHHHHhcCcCC---CCCCCCeEEEEECChHHHHHHHHHHHHHHhc-CEEEEecCC
Confidence 459999999999998754321 2246689999999877788899999999998 54 334455
Q ss_pred ccHHHHHhhhhhcCCCC
Q psy1221 202 SGLQSFLKGVQENNPNL 218 (690)
Q Consensus 202 ~~Lk~~lk~~~kl~~~~ 218 (690)
.++...++.+++.+...
T Consensus 364 ~~~~~~~~~a~~~g~p~ 380 (421)
T 1h4v_B 364 RKPAKGLEEALKRGAAF 380 (421)
T ss_pred CCHHHHHHHHHhCCCCE
Confidence 68999999998887644
No 15
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=99.77 E-value=9.1e-19 Score=193.17 Aligned_cols=149 Identities=23% Similarity=0.380 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCceEEEecCCCCCCCCcceeEEEEEEcC-CCcceEeeccchhhhhhhcCCCCCCCCccchh
Q psy1221 44 KEGLEAIKLLFHYCQIYGLKDTIVFDLSLARGLDYYTGVIYEAVLKD-QAVGSVAGGGRYDNLVGMFDPKNKTTPCVAAK 122 (690)
Q Consensus 44 ~~~l~~l~~~~~~l~~~g~~~~i~~d~~~~r~~~YYtG~vFe~~~~~-~~~~~i~~GGRYD~L~~~f~~~~~~~~~~g~~ 122 (690)
.+++++++++.++|+.+|+. +.+|++++||++||||++||++..+ +..++||+|||||+|++.||+ +.+|+
T Consensus 230 ~~~~~~l~~~~~~l~~~g~~--i~~D~~l~rg~~YYtg~vFe~~~~~~g~~~~v~~GGRYD~l~~~fgg--~~~pa---- 301 (423)
T 1htt_A 230 EESREHFAGLCKLLESAGIA--YTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGG--RATPA---- 301 (423)
T ss_dssp HHHHHHHHHHHHHHHTTTCC--CEECTTCCCSSTTCCSEEEEEECC----CCEEEEEEECTTHHHHTTS--CCCCE----
T ss_pred HHHHHHHHHHHHHHHHcCCe--EEEccccccchHHHcCceEEEEeCCCCCcCCcCCCccHHHHHHHhCC--CCCCe----
Confidence 45789999999999999985 9999999999999999999999765 345699999999999999985 45675
Q ss_pred hhhhhhcccccccCcceeeeeHHHHHHHHHhhhhccCCcccCCceeEEEEeCCccchHHHHhHhhhhhcC--C-cccCCc
Q psy1221 123 LLHEVQGLLETSCRSCREDIGVERLFSIIENRNAEQGVKVKTTSTQVYVASAQKNLVEPRMQLCHELWGG--E-KTQEKP 199 (690)
Q Consensus 123 ~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~l~~~L~~~--~-i~~~~~ 199 (690)
+||+||+|||+.++.+.+.. .++..+++|+|++.++.....+++++++||.. + .+..+.
T Consensus 302 ---------------vGf~igveRl~~~l~e~~~~---~~~~~p~~v~i~~~~~~~~~~a~~l~~~Lr~~~~Gi~v~~d~ 363 (423)
T 1htt_A 302 ---------------VGFAMGLERLVLLVQAVNPE---FKADPVVDIYLVASGADTQSAAMALAERLRDELPGVKLMTNH 363 (423)
T ss_dssp ---------------EEEEEEHHHHHHHHHHHSTT---CCCCCSCSEEEEECSTTHHHHHHHHHHHHHHHSTTCCEEECC
T ss_pred ---------------EEEEecHHHHHHHHHhcCcC---CCCCCCCcEEEEEcCHHHHHHHHHHHHHHHcCCCCcEEEEeC
Confidence 45999999999999876432 12245679999998877788899999999986 4 444455
Q ss_pred ccccHHHHHhhhhhcCCCC
Q psy1221 200 KLSGLQSFLKGVQENNPNL 218 (690)
Q Consensus 200 ~~~~Lk~~lk~~~kl~~~~ 218 (690)
...++...++.+++.+...
T Consensus 364 ~~~~~~~~~~~a~~~g~p~ 382 (423)
T 1htt_A 364 GGGNFKKQFARADKWGARV 382 (423)
T ss_dssp SCCCHHHHHHHHHHHTCSE
T ss_pred CCCCHHHHHHHHHHcCCCE
Confidence 5578999999998887543
No 16
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*
Probab=99.70 E-value=1.8e-18 Score=179.32 Aligned_cols=106 Identities=20% Similarity=0.207 Sum_probs=87.0
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHhhhhhhhccHHHHHHHHHHHHHHHHHH-HhCCCceEEEecCCCCCCCCcce
Q psy1221 3 GEKNLSPEVADKIGEYVLKHGHVDLVENLLADEFLAKSKQAKEGLEAIKLLFHYCQ-IYGLKDTIVFDLSLARGLDYYTG 81 (690)
Q Consensus 3 ~~~~l~~~~~~~l~~l~~~~G~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~l~-~~g~~~~i~~d~~~~r~~~YYtG 81 (690)
++++++++.++.+.+++.++|+++.+.. +..++ +++++|+++.++|+ .+| ..++.|||+++||++||||
T Consensus 167 ~~~~l~~~~~~~l~~l~~~~g~~~~l~~------l~~~~---~~l~~l~~l~~~l~~~~g-~~~~~~D~~lvRgldYYtG 236 (275)
T 1usy_A 167 HMKKIDLSRVEKIIEDSIYRRSPEHLKT------MDLPL---SVREDLLSASSFLQEKFP-TVSVEIDLTLARTIEEYCG 236 (275)
T ss_dssp HHTCCCCTHHHHHHHHHHHCCSGGGGGT------SCCCH---HHHHHHHHHHHHHHHHCS-SSEEEECCCCGGGGGTCSS
T ss_pred HhcCCCHHHHHHHHHHHHhhCCHHHHHH------HhcCH---HHHHHHHHHHHHHHHhcC-CCeEEEeccccCCCCccCC
Confidence 3467888899999999999998653322 22233 56999999999999 999 5579999999999999999
Q ss_pred eEEEEEEcCCCcceEeeccchhhhhhhcCCCCCCCCccchhhhhhhhcccccccCcceeeeeHHHH
Q psy1221 82 VIYEAVLKDQAVGSVAGGGRYDNLVGMFDPKNKTTPCVAAKLLHEVQGLLETSCRSCREDIGVERL 147 (690)
Q Consensus 82 ~vFe~~~~~~~~~~i~~GGRYD~L~~~f~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~l 147 (690)
+|||++..+ .+++||+|||||+| .+|| ||||||+|||
T Consensus 237 ~vFe~~~~~-~~~~i~~GGRYD~l---------~~pa-------------------vGfsig~er~ 273 (275)
T 1usy_A 237 LIFTIYDTS-SSRLVAAGGEYTVN---------GEKG-------------------VGGSIFLEGK 273 (275)
T ss_dssp EEEEEEETT-TTEEEEEEEEEEET---------TEEE-------------------EEEEEEEEEE
T ss_pred eEEEEEECC-CCCeEeeecCCCCC---------CCCE-------------------EEEEEEeecc
Confidence 999999986 45799999999996 2564 5599999986
No 17
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=99.70 E-value=4.1e-17 Score=179.73 Aligned_cols=146 Identities=20% Similarity=0.360 Sum_probs=118.6
Q ss_pred HHHHHHHHHHHHHHHhCCCceEEEecCCCCCCCCcceeEEEEEEcCC----CcceEeeccchhhhhhhcCCCCCCCCccc
Q psy1221 45 EGLEAIKLLFHYCQIYGLKDTIVFDLSLARGLDYYTGVIYEAVLKDQ----AVGSVAGGGRYDNLVGMFDPKNKTTPCVA 120 (690)
Q Consensus 45 ~~l~~l~~~~~~l~~~g~~~~i~~d~~~~r~~~YYtG~vFe~~~~~~----~~~~i~~GGRYD~L~~~f~~~~~~~~~~g 120 (690)
+++++++++.++|+.+|+. +.+|++++|+++||||++||++.++. ..++|++|||||+|++.||+ +.+|++
T Consensus 230 ~~~~~l~~l~~~l~~~gi~--~~~d~~l~rg~~yYtg~vfe~~~~~~~~~g~~~~i~~GgRYd~l~~~~g~--~~~P~v- 304 (420)
T 1qe0_A 230 ESKAYYEQVKAYLDDLGIP--YTEDPNLVRGLDYYTHTAFELMMDNPNYDGAITTLCGGGRYNGLLELLDG--PSETGI- 304 (420)
T ss_dssp THHHHHHHHHHHHHHHTCC--CEECTTCCCCCTTEEEEEEEEEEECTTSTTSEEEEEEEEEEESHHHHTTC--CCCEEE-
T ss_pred HHHHHHHHHHHHHHHcCCe--EEECcccccchhhhcCeEEEEEEcCCCCCCCcCccccCccHHHHHHHhCC--CCCCEE-
Confidence 4678888999999999985 99999999999999999999998742 34699999999999999985 456754
Q ss_pred hhhhhhhhcccccccCcceeeeeHHHHHHHHHhhhhccCCccc-CCceeEEEEeCCccchHHHHhHhhhhhcCCc-ccCC
Q psy1221 121 AKLLHEVQGLLETSCRSCREDIGVERLFSIIENRNAEQGVKVK-TTSTQVYVASAQKNLVEPRMQLCHELWGGEK-TQEK 198 (690)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~v~v~~~~~~~~~~~~~l~~~L~~~~i-~~~~ 198 (690)
||++|+|||+.++++.+.. ++ ..+++|+|++.++.....++++++.||..++ +..+
T Consensus 305 ------------------g~~igveRl~~~le~~~~~----~p~~~p~~v~i~~~~~~~~~~a~~l~~~Lr~~Gi~v~~d 362 (420)
T 1qe0_A 305 ------------------GFALSIERLLLALEEEGIE----LDIEENLDLFIVTMGDQADRYAVKLLNHLRHNGIKADKD 362 (420)
T ss_dssp ------------------EEEEEHHHHHHHHHHTTCC----CCCCCCCSEEEEECHHHHHHHHHHHHHHHHTTTCCEEEC
T ss_pred ------------------EEEecHHHHHHHHHhcCCC----CCCCCCCeEEEEEeCHHHHHHHHHHHHHHHHCCCEEEEe
Confidence 5999999999999754321 22 4567899999887777889999999999554 4445
Q ss_pred cccccHHHHHhhhhhcCCC
Q psy1221 199 PKLSGLQSFLKGVQENNPN 217 (690)
Q Consensus 199 ~~~~~Lk~~lk~~~kl~~~ 217 (690)
....++...++.+++.+..
T Consensus 363 ~~~~~~~~~~~~a~~~g~p 381 (420)
T 1qe0_A 363 YLQRKIKGQMKQADRLGAK 381 (420)
T ss_dssp CSCCCHHHHHHHHHHTTCS
T ss_pred cCCCCHHHHHHHHHHcCCC
Confidence 5556899999998887643
No 18
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.68 E-value=1.3e-16 Score=181.77 Aligned_cols=135 Identities=16% Similarity=0.163 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHhccCCCCeEEEEeCCCCCccEEEEEecChhHHHHHHHhcc-cEEEEecccCCChhhhHHhhccCCCCCC
Q psy1221 242 MLSVVTFLESLVNKNEDGRILVTKNPELSKSHIKYILLNPANHFTDIVQDA-RSIIVAGGTMEPVSEFKDQLFGSLGVPE 320 (690)
Q Consensus 242 l~~~~~fl~~l~~~~~~~~v~~~~~~~~~~~~l~~~~ldps~~l~~~~~~~-~svIl~SGTL~P~~~~~~~L~~~~g~~~ 320 (690)
+..+.+|+..|.. +++++ + +.. . +|+++|+||+..|+ +++++ +++|||||||+|+++|.+.| |+++
T Consensus 273 ~~~l~~~~~~~~~--~~~~v-~-~~~---~-~l~~~pl~~~~~l~-~~~~~~~svIltSaTL~~~~~~~~~l----Gl~~ 339 (551)
T 3crv_A 273 IGSILRFFSLLSI--GSFIP-F-SYS---K-RLVIKNPEISYYLN-LLNDNELSIILMSGTLPPREYMEKVW----GIKR 339 (551)
T ss_dssp HHHHHHHHHHHHH--SSCEE-E-EET---T-EEEEECCCTHHHHG-GGGCTTCEEEEEESSCCCHHHHHHTS----CCCS
T ss_pred HHHHHHHHHHHhc--cCCeE-e-ccC---C-EEEEEECCHHHHHH-HHhccCceEEEEeeCCCcHHHHHHHh----CCCC
Confidence 6678888877765 44664 2 221 2 79999999999999 99999 99999999999999999999 8863
Q ss_pred Cc---eEeeecCCccCCCCeeEEEeecCCCCceeEEeecccCChHHHHHHHHHHHHHHhccCCeEEEEcCccchHHHHHh
Q psy1221 321 SR---IHHFSCGHVIPKENILPLILCSGPTNRKFDLTFENRTKGDTLKEIAMTITNLCTIVPKGMVCFFPSYDYEAIVYN 397 (690)
Q Consensus 321 ~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~y~~R~~~~~~~~l~~~i~~~~~~~pgg~lvFFpSY~~l~~v~~ 397 (690)
.. +..++++||| ++|..++++. .+.++|++|+ +++++.+++.|.++++.+|||+|||||||.+|+++++
T Consensus 340 ~~~~~~~~~~~~spf-~~~~~l~v~~------~~~~~~~~r~-~~~~~~l~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~ 411 (551)
T 3crv_A 340 NMLYLDVEREIQKRV-SGSYECYIGV------DVTSKYDMRS-DNMWKRYADYLLKIYFQAKANVLVVFPSYEIMDRVMS 411 (551)
T ss_dssp CEEEEEHHHHTTSCC-SCEEEEEEEC------SCCCCTTTCC-HHHHHHHHHHHHHHHHHCSSEEEEEESCHHHHHHHHT
T ss_pred ccccccceeecCCcC-CCceEEEEeC------CCCCccccCC-HHHHHHHHHHHHHHHHhCCCCEEEEecCHHHHHHHHH
Confidence 32 1267889999 8899888764 2445688886 6788999999999999999999999999999999986
No 19
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=98.91 E-value=8.2e-09 Score=117.00 Aligned_cols=116 Identities=11% Similarity=0.170 Sum_probs=72.5
Q ss_pred CCeEEEEeCCCCCccEEEEEecChhHHHHHHHhcccEEEEecccCCChhhhHHhhccCCCCCCCceEeeecCCccCCCCe
Q psy1221 258 DGRILVTKNPELSKSHIKYILLNPANHFTDIVQDARSIIVAGGTMEPVSEFKDQLFGSLGVPESRIHHFSCGHVIPKENI 337 (690)
Q Consensus 258 ~~~v~~~~~~~~~~~~l~~~~ldps~~l~~~~~~~~svIl~SGTL~P~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~ 337 (690)
++.++|.. + .|.+.|.+....+.+.....+++|||||||+|.. ++..+. .....+++...+
T Consensus 291 ~~~~~~~~----~--~l~~~P~~~~~~l~~~~~~~~~~IltSATL~p~~----------~~~~~f--~~~~~~~~g~~~- 351 (540)
T 2vl7_A 291 KGDLYNCN----G--SLVKVPSDVNQLIEDALNVKTFKVLMSGTLPESL----------TLTNSY--KIVVNESYGRGE- 351 (540)
T ss_dssp CCEEEEET----T--EEEEECSCHHHHHHHHTCCSSCEEEEESSCCTTC----------CCTTEE--EEECCCC-CCCE-
T ss_pred CCCEEEEC----C--eEEEehHHHHHHHHHhcCccCCeEEEcccCCCCc----------ccchhc--CCchhheecCCc-
Confidence 56788862 1 4554444443333333222344599999999941 111110 011223332111
Q ss_pred eEEEeecCCCCceeEEeecccCChHHHHHHHHHHHHHHhccCCeEEEEcCccchHHHHHhhcCc
Q psy1221 338 LPLILCSGPTNRKFDLTFENRTKGDTLKEIAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYMPD 401 (690)
Q Consensus 338 ~~~v~~~~~~~~~l~~~y~~R~~~~~~~~l~~~i~~~~~~~pgg~lvFFpSY~~l~~v~~~~~~ 401 (690)
+++. ..+++.|..|+ ..+ +.+++.|.++++..|||+|||||||.+|+.+++.|+.
T Consensus 352 -~~~~------~~l~s~f~~r~-~~~-~~~~~~l~~~~~~~~g~~lvff~S~~~~~~v~~~l~~ 406 (540)
T 2vl7_A 352 -YYYC------PNVTSELRKRN-SNI-PIYSILLKRIYENSSKSVLVFFPSYEMLESVRIHLSG 406 (540)
T ss_dssp -EEEC------TTCCCCGGGHH-HHH-HHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHTTCTT
T ss_pred -ceec------cccCCCccccc-CHH-HHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHhcc
Confidence 2221 24677888886 345 9999999999999999999999999999999998854
No 20
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=98.36 E-value=2.2e-07 Score=106.06 Aligned_cols=136 Identities=13% Similarity=0.084 Sum_probs=92.8
Q ss_pred ceEEEecCCCC--------------------CCCCcceeEEEEEEcC-CCcceEeeccchh-----------hhh----h
Q psy1221 64 DTIVFDLSLAR--------------------GLDYYTGVIYEAVLKD-QAVGSVAGGGRYD-----------NLV----G 107 (690)
Q Consensus 64 ~~i~~d~~~~r--------------------~~~YYtG~vFe~~~~~-~~~~~i~~GGRYD-----------~L~----~ 107 (690)
..+.+|++++| |.|||++.+|++.... +...++|+ |||| +|- +
T Consensus 342 i~~~iD~sl~r~~~~~~ga~~~~~~~~~~~~grd~~~~~~~el~~~~~G~~~~~~g-g~~~~~~~ievg~~f~Lg~~ys~ 420 (572)
T 2j3l_A 342 VKIYADLAVQDLANAIVGANEDGYHLTNVNPDRDFQPISYEDLRFVQEGDPSPDGN-GVLAFTKGIEIGHIFKLGTRYSD 420 (572)
T ss_dssp CEEEEETTTTTCCSEEEECSSTTEEEEEECBTTTBCCSEEECCBCCCTTCBCTTSS-SBEEEEEEEEEEEEEEEETHHHH
T ss_pred CcEEEehhhhcCCceEEccCCCCceeeccccccCcCcCcHHHHHHHhcCCcccccC-CcceeccceEEEEEeccCccccc
Confidence 36899999999 7899999999987643 23445664 7776 332 3
Q ss_pred hcCC-----CCC-CCCccchhhhhhhhcccccccCcceeeeeHHHHHHHHHhhhhc-cC--CcccCCceeEEEEeCC---
Q psy1221 108 MFDP-----KNK-TTPCVAAKLLHEVQGLLETSCRSCREDIGVERLFSIIENRNAE-QG--VKVKTTSTQVYVASAQ--- 175 (690)
Q Consensus 108 ~f~~-----~~~-~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~-~~--~~~~~~~~~v~v~~~~--- 175 (690)
.|+. .++ ..|++| ||+||+|||+.++.+.... .+ ...+..+.+|+|++.+
T Consensus 421 ~~~~~~~~~~g~~~~p~~g------------------~~giGveRli~~l~e~~~d~~g~~~p~~~ap~~v~vi~~~~~~ 482 (572)
T 2j3l_A 421 AMGATVLDENGREKSVIMG------------------CYGIGVSRLLSAIVEQNADERGINWPTGIAPFDLHVVQMNVKD 482 (572)
T ss_dssp HHTCEEECTTSCEEECEEE------------------EEEEEHHHHHHHHHHHHEETTEECCCTTTSSCSEEEEESCTTC
T ss_pred ccCCEEECCCCcEEeeeee------------------ccccCHHHHHHHHHHhcCcccCcccCCCcCCeEEEEEecCCCC
Confidence 4421 011 234332 5999999999986543210 01 1122356899999998
Q ss_pred ccchHHHHhHhhhhhcCC-cccCCcccccHHHHHhhhhhcCCCC
Q psy1221 176 KNLVEPRMQLCHELWGGE-KTQEKPKLSGLQSFLKGVQENNPNL 218 (690)
Q Consensus 176 ~~~~~~~~~l~~~L~~~~-i~~~~~~~~~Lk~~lk~~~kl~~~~ 218 (690)
+.....+.++++.||+.+ .+..+....++...++.+++.+...
T Consensus 483 ~~~~~~a~~l~~~Lr~~gi~v~~d~~~~~~g~k~~~a~~~g~p~ 526 (572)
T 2j3l_A 483 EYQTKLSQEVEAMMTEAGYEVLVDDRNERAGVKFADADLIGCPI 526 (572)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEECSSCCHHHHHHHHHHHCCSE
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEeCCCCCHhHHHHHHHhcCCCE
Confidence 666778899999999954 4444555678999999999887654
No 21
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=98.16 E-value=1.5e-06 Score=94.63 Aligned_cols=133 Identities=11% Similarity=0.070 Sum_probs=92.6
Q ss_pred HHHHHHhCCCceEE------------EecCCCC--CCCCcceeEEEEEEcCCCcceEeeccchhhhhhhcCCCCCCCCcc
Q psy1221 54 FHYCQIYGLKDTIV------------FDLSLAR--GLDYYTGVIYEAVLKDQAVGSVAGGGRYDNLVGMFDPKNKTTPCV 119 (690)
Q Consensus 54 ~~~l~~~g~~~~i~------------~d~~~~r--~~~YYtG~vFe~~~~~~~~~~i~~GGRYD~L~~~f~~~~~~~~~~ 119 (690)
.+.|+..|++ +. +|+.+++ |.+||+|++|.-+. -+.+.||||+.. .|+ +.+|++
T Consensus 201 ~~~l~~~g~~--~~~~~~~~~~y~~~~d~~~~~~~G~~~~~gt~~~d~~-----l~~~~~~~y~~~---~g~--~~~p~~ 268 (401)
T 1evl_A 201 AVALEENNIP--FEYQLGEGAFYGPKIEFTLYDCLDRAWQCGTVQLDFS-----LPSRLSASYVGE---DNE--RKVPVM 268 (401)
T ss_dssp HHHHHHTTCC--CEEETTCSBTTBCEEEEEEECTTCCEEEEEEEEEESS-----HHHHTTCCEECT---TSC--EECCEE
T ss_pred HHHHHhcCCC--ceecCCCccccCCCcCeEEEecCCCeEEeeeeeeccc-----cccccCCEEECC---CCC--CcCcEE
Confidence 3445667765 33 6777888 99999999983111 134578999742 232 345655
Q ss_pred chhhhhhhhcccccccCccee-ee--eHHHHHHHHHhhhhccCCcccCCceeEEEEeCCccchHHHHhHhhhhhcCC-cc
Q psy1221 120 AAKLLHEVQGLLETSCRSCRE-DI--GVERLFSIIENRNAEQGVKVKTTSTQVYVASAQKNLVEPRMQLCHELWGGE-KT 195 (690)
Q Consensus 120 g~~~~~~~~~~~~~~~~~~g~-~~--~~~~l~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~l~~~L~~~~-i~ 195 (690)
| + ++ |+|||+.++.+..... ...+..+.+|+|++.++.....++++++.||+.+ .+
T Consensus 269 ~-------------------~~~~~GgieRli~~l~e~~~~~-~p~~~ap~~v~vi~~~~~~~~~a~~l~~~Lr~~Gi~v 328 (401)
T 1evl_A 269 I-------------------HRAILGSMERFIGILTEEFAGF-FPTWLAPVQVVIMNITDSQSEYVNELTQKLSNAGIRV 328 (401)
T ss_dssp E-------------------EEEEEEEHHHHHHHHHHHHTTC-CCTTTCSSCEEEEESSGGGHHHHHHHHHHHHHTTCCE
T ss_pred E-------------------EecCCCcHHHHHHHHHHHhCCc-CCCCCCCeEEEEEecCHHHHHHHHHHHHHHHHCCCEE
Confidence 4 5 55 9999999887642111 1122356899999999888889999999999954 44
Q ss_pred cCCcccccHHHHHhhhhhcCCCC
Q psy1221 196 QEKPKLSGLQSFLKGVQENNPNL 218 (690)
Q Consensus 196 ~~~~~~~~Lk~~lk~~~kl~~~~ 218 (690)
..+....+++..++.+++.+...
T Consensus 329 ~~d~~~~~~~~k~~~A~~~g~p~ 351 (401)
T 1evl_A 329 KADLRNEKIGFKIREHTLRRVPY 351 (401)
T ss_dssp EEECCSSCHHHHHHHHHHTTCSE
T ss_pred EEECCCCCHHHHHHHHHhcCCCE
Confidence 44555678999999999987644
No 22
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=98.11 E-value=7e-07 Score=98.95 Aligned_cols=122 Identities=14% Similarity=0.047 Sum_probs=87.0
Q ss_pred EEEecCCCCCCCCcceeEEEEEEcCCCcceEeeccchhhhhhhcCCCCCCCCccchhhhhhhhcccccccCcceeeeeHH
Q psy1221 66 IVFDLSLARGLDYYTGVIYEAVLKDQAVGSVAGGGRYDNLVGMFDPKNKTTPCVAAKLLHEVQGLLETSCRSCREDIGVE 145 (690)
Q Consensus 66 i~~d~~~~r~~~YYtG~vFe~~~~~~~~~~i~~GGRYD~L~~~f~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~ 145 (690)
+.+|++++||++ ||.+||+ + ...+++.||||++. .| +..|.+ ++||+||+|
T Consensus 291 ~~~~l~~~rgl~--~G~iFel---g-~~~s~~~g~ry~~~---~G---~~~p~~-----------------~~gfgiGve 341 (458)
T 2i4l_A 291 PEANRLNTRGIE--VGQIFYF---G-TKYSDSMKANVTGP---DG---TDAPIH-----------------GGSYGVGVS 341 (458)
T ss_dssp CTTTEEEEEEEE--EEEEEEE---E-THHHHHTTCEEECT---TS---CEEECE-----------------EEEEEEEHH
T ss_pred CCcCceeeeeec--cCcEEEe---c-ccccccCCcEEECC---CC---CEeceE-----------------EeeecccHH
Confidence 557888999999 9999998 2 34588999999763 33 456643 256999999
Q ss_pred HHHHHHHhhh-hccCCcc--cCCceeEEEEeCC---ccchHHHHhHhhhhhcCC-cccCCcccccHHHHHhhhhhcCC
Q psy1221 146 RLFSIIENRN-AEQGVKV--KTTSTQVYVASAQ---KNLVEPRMQLCHELWGGE-KTQEKPKLSGLQSFLKGVQENNP 216 (690)
Q Consensus 146 ~l~~~~~~~~-~~~~~~~--~~~~~~v~v~~~~---~~~~~~~~~l~~~L~~~~-i~~~~~~~~~Lk~~lk~~~kl~~ 216 (690)
||+.++.+.. -+.+..+ +..+.+|+|++.+ +...+.+.++++.||..+ .+..+....++...++.+++.+.
T Consensus 342 Rli~al~e~~~d~~g~~~p~~~ap~~v~vi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~~~~g~k~~~ad~~g~ 419 (458)
T 2i4l_A 342 RLLGAIIEACHDDNGIIWPEAVAPFRVTILNLKQGDAATDAACDQLYRELSAKGVDVLYDDTDQRAGAKFATADLIGI 419 (458)
T ss_dssp HHHHHHHHHSEETTEECCCTTTCSCSEEEEESSTTCHHHHHHHHHHHHHHHHTTCCEEEECSSCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhccccCCcCCcccCCceEEEEecCCCCHHHHHHHHHHHHHHhhCCCEEEEECCCCCHHHHHHHHHhcCC
Confidence 9999864431 1111112 2246789999886 455778899999999954 44445445689999999988764
No 23
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=97.81 E-value=0.00036 Score=74.55 Aligned_cols=91 Identities=7% Similarity=0.059 Sum_probs=70.0
Q ss_pred HHHHHHHHHHhhhcccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCc-hhHHHHHHHhhhcccCCc
Q psy1221 574 LKEIAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKT-SEVDKVLSDYGTSVEKGG 652 (690)
Q Consensus 574 ~~~l~~~I~~l~~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~-~~~~~~l~~f~~~~~~~~ 652 (690)
...+.+.+.. ..++.+|||++|....+.+++.+++.+. +...+.+..+ .++..++++|++. +.
T Consensus 238 ~~~l~~~l~~---~~~~~~lvf~~~~~~~~~l~~~L~~~~~----------~~~~~~~~~~~~~r~~~~~~f~~~---~~ 301 (391)
T 1xti_A 238 NRKLFDLLDV---LEFNQVVIFVKSVQRCIALAQLLVEQNF----------PAIAIHRGMPQEERLSRYQQFKDF---QR 301 (391)
T ss_dssp HHHHHHHHHH---SCCSEEEEECSCHHHHHHHHHHHHHTTC----------CEEEECTTSCHHHHHHHHHHHHTT---CC
T ss_pred HHHHHHHHHh---cCCCcEEEEeCcHHHHHHHHHHHHhCCC----------cEEEEeCCCCHHHHHHHHHHHhcC---CC
Confidence 3444444433 2457899999999999999999986543 2445555544 3789999999876 57
Q ss_pred eEEEEeeCcccccccccCCCcceEEEEEcCCC
Q psy1221 653 ALMLSVIGGKLSEGLNFSDDLGRCVVVMCNSN 684 (690)
Q Consensus 653 aiLfaV~gG~~sEGIDf~g~~~r~ViivgLPf 684 (690)
.||+|+ ..+++|||+++ +++||..++|.
T Consensus 302 ~vlv~T--~~~~~Gidi~~--~~~Vi~~~~p~ 329 (391)
T 1xti_A 302 RILVAT--NLFGRGMDIER--VNIAFNYDMPE 329 (391)
T ss_dssp SEEEES--CCCSSCBCCTT--EEEEEESSCCS
T ss_pred cEEEEC--ChhhcCCCccc--CCEEEEeCCCC
Confidence 899888 88999999987 89999999885
No 24
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=97.66 E-value=0.00061 Score=72.61 Aligned_cols=80 Identities=13% Similarity=0.258 Sum_probs=65.1
Q ss_pred ccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCc-hhHHHHHHHhhhcccCCceEEEEeeCcccccc
Q psy1221 588 VPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKT-SEVDKVLSDYGTSVEKGGALMLSVIGGKLSEG 666 (690)
Q Consensus 588 ~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~-~~~~~~l~~f~~~~~~~~aiLfaV~gG~~sEG 666 (690)
..+.++||++|....+.+++.+++.+. +..++-+..+ .++.+++++|++. +..||+|+ ..+++|
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~~~----------~~~~~~~~~~~~~r~~~~~~f~~g---~~~vlv~T--~~~~~G 306 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSEGH----------EVSILHGDLQTQERDRLIDDFREG---RSKVLITT--NVLARG 306 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHTTC----------CCEEECTTSCHHHHHHHHHHHHTT---SCCEEEEC--GGGSSS
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhcCC----------cEEEeCCCCCHHHHHHHHHHHHCC---CCCEEEEC--ChhhcC
Confidence 457899999999999999999986543 3445555544 3789999999876 56799888 889999
Q ss_pred cccCCCcceEEEEEcCCC
Q psy1221 667 LNFSDDLGRCVVVMCNSN 684 (690)
Q Consensus 667 IDf~g~~~r~ViivgLPf 684 (690)
||+++ +++||..++|.
T Consensus 307 idip~--~~~Vi~~~~p~ 322 (395)
T 3pey_A 307 IDIPT--VSMVVNYDLPT 322 (395)
T ss_dssp CCCTT--EEEEEESSCCB
T ss_pred CCccc--CCEEEEcCCCC
Confidence 99996 89999999884
No 25
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=97.51 E-value=0.0025 Score=72.42 Aligned_cols=95 Identities=9% Similarity=0.192 Sum_probs=70.5
Q ss_pred HHHHHHHhhh--cccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHh-cCceEEEcCCCc-hhHHHHHHHhhhcccCCc
Q psy1221 577 IAMTITNLCT--IVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIA-KKKVVFREPKKT-SEVDKVLSDYGTSVEKGG 652 (690)
Q Consensus 577 l~~~I~~l~~--~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~-~~~~i~~E~~~~-~~~~~~l~~f~~~~~~~~ 652 (690)
..+.+.+.+. ..++.++||++|....+.+++.+++. +. ......+-+..+ .++..++++|++. +.
T Consensus 274 ~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~--------~~~~~~v~~~hg~~~~~~R~~~~~~F~~g---~~ 342 (579)
T 3sqw_A 274 AVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNE--------FKKDLPILEFHGKITQNKRTSLVKRFKKD---ES 342 (579)
T ss_dssp HHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHH--------HTTTSCEEEESTTSCHHHHHHHHHHHHHC---SS
T ss_pred HHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHh--------hcCCCcEEEecCCCCHHHHHHHHHHhhcC---CC
Confidence 3344444433 34568999999999999999998843 21 123344555443 3789999999986 67
Q ss_pred eEEEEeeCcccccccccCCCcceEEEEEcCCCCC
Q psy1221 653 ALMLSVIGGKLSEGLNFSDDLGRCVVVMCNSNPL 686 (690)
Q Consensus 653 aiLfaV~gG~~sEGIDf~g~~~r~ViivgLPfp~ 686 (690)
.||+|+ ..+++|||+++ +++||..++|...
T Consensus 343 ~vLVaT--~~~~~GiDip~--v~~VI~~~~p~s~ 372 (579)
T 3sqw_A 343 GILVCT--DVGARGMDFPN--VHEVLQIGVPSEL 372 (579)
T ss_dssp EEEEEC--GGGTSSCCCTT--CCEEEEESCCSST
T ss_pred eEEEEc--chhhcCCCccc--CCEEEEcCCCCCH
Confidence 899888 88999999998 8999999999643
No 26
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=97.49 E-value=0.0012 Score=75.21 Aligned_cols=144 Identities=11% Similarity=0.070 Sum_probs=93.5
Q ss_pred cceEEEeCCCCCch--hhHHHHhhccCCCCCCceEEEEeCCCccCCCeeEEEeecCCCCcceeeeccccCChHHHHHHHH
Q psy1221 502 ARSIIVAGGTMEPV--SEFKDQLFGSLGVPESRIHHFSCGHVIPKENILPLILCSGPTNRKFDLTFENRTKGDTLKEIAM 579 (690)
Q Consensus 502 ~~svil~SgTLsP~--~~f~~~l~~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~ 579 (690)
...+|++|||+++. ......+ +++. ... ....|+..|+...+... .......+..+.+
T Consensus 200 ~~~ii~lSAT~~~~v~~~i~~~l----~~~~--~~~--~~~~~~r~nl~~~v~~~------------~~~~~~~~~~l~~ 259 (591)
T 2v1x_A 200 NASLIGLTATATNHVLTDAQKIL----CIEK--CFT--FTASFNRPNLYYEVRQK------------PSNTEDFIEDIVK 259 (591)
T ss_dssp TSEEEEEESSCCHHHHHHHHHHT----TCCS--CEE--EECCCCCTTEEEEEEEC------------CSSHHHHHHHHHH
T ss_pred CCcEEEEecCCCHHHHHHHHHHh----CCCC--cEE--EecCCCCcccEEEEEeC------------CCcHHHHHHHHHH
Confidence 46799999999774 2333333 4432 122 23345555554333311 1111233333433
Q ss_pred HHHHhhhcccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCc-hhHHHHHHHhhhcccCCceEEEEe
Q psy1221 580 TITNLCTIVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKT-SEVDKVLSDYGTSVEKGGALMLSV 658 (690)
Q Consensus 580 ~I~~l~~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~-~~~~~~l~~f~~~~~~~~aiLfaV 658 (690)
.|.+. ..++.++||++|....+.+++.++..++ ....+-...+ .++..++++|++. +..||+|+
T Consensus 260 ~l~~~--~~~~~~IVf~~sr~~~e~la~~L~~~g~----------~~~~~h~~l~~~~R~~~~~~F~~g---~~~VlVAT 324 (591)
T 2v1x_A 260 LINGR--YKGQSGIIYCFSQKDSEQVTVSLQNLGI----------HAGAYHANLEPEDKTTVHRKWSAN---EIQVVVAT 324 (591)
T ss_dssp HHTTT--TTTCEEEEECSSHHHHHHHHHHHHHTTC----------CEEEECTTSCHHHHHHHHHHHHTT---SSSEEEEC
T ss_pred HHHHh--ccCCCeEEEeCcHHHHHHHHHHHHHCCC----------CEEEecCCCCHHHHHHHHHHHHcC---CCeEEEEe
Confidence 33221 1456799999999999999999986543 2344444444 3789999999986 67899888
Q ss_pred eCcccccccccCCCcceEEEEEcCCC
Q psy1221 659 IGGKLSEGLNFSDDLGRCVVVMCNSN 684 (690)
Q Consensus 659 ~gG~~sEGIDf~g~~~r~ViivgLPf 684 (690)
..|++|||+|+ ++.||..++|.
T Consensus 325 --~a~~~GID~p~--V~~VI~~~~p~ 346 (591)
T 2v1x_A 325 --VAFGMGIDKPD--VRFVIHHSMSK 346 (591)
T ss_dssp --TTSCTTCCCSC--EEEEEESSCCS
T ss_pred --chhhcCCCccc--ccEEEEeCCCC
Confidence 78999999997 89999999985
No 27
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=97.45 E-value=0.0017 Score=72.85 Aligned_cols=138 Identities=10% Similarity=0.089 Sum_probs=91.5
Q ss_pred ceEEEeCCCCCch--hhHHHHhhccCCCCCCceEEEEeCCCccCCCeeEEEeecCCCCcceeeeccccCChHHHHHHHHH
Q psy1221 503 RSIIVAGGTMEPV--SEFKDQLFGSLGVPESRIHHFSCGHVIPKENILPLILCSGPTNRKFDLTFENRTKGDTLKEIAMT 580 (690)
Q Consensus 503 ~svil~SgTLsP~--~~f~~~l~~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~ 580 (690)
..++++|||+.+. ..+...+ |+... . .+ ...++..+....+.+ .. ...+.+.+.
T Consensus 175 ~~~i~lSAT~~~~~~~~i~~~l----~~~~~-~-~~--~~~~~r~~l~~~v~~--------------~~--~~~~~l~~~ 230 (523)
T 1oyw_A 175 LPFMALTATADDTTRQDIVRLL----GLNDP-L-IQ--ISSFDRPNIRYMLME--------------KF--KPLDQLMRY 230 (523)
T ss_dssp SCEEEEESCCCHHHHHHHHHHH----TCCSC-E-EE--ECCCCCTTEEEEEEE--------------CS--SHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHh----CCCCC-e-EE--eCCCCCCceEEEEEe--------------CC--CHHHHHHHH
Confidence 5688999999874 3343444 44332 1 11 133444454433331 11 223344444
Q ss_pred HHHhhhcccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCc-hhHHHHHHHhhhcccCCceEEEEee
Q psy1221 581 ITNLCTIVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKT-SEVDKVLSDYGTSVEKGGALMLSVI 659 (690)
Q Consensus 581 I~~l~~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~-~~~~~~l~~f~~~~~~~~aiLfaV~ 659 (690)
|.+ ..++.++||++|....+.+++.+++.++ +....-...+ .++..++++|++. +..||+|+
T Consensus 231 l~~---~~~~~~IVf~~sr~~~e~l~~~L~~~g~----------~~~~~h~~l~~~~R~~~~~~f~~g---~~~vlVaT- 293 (523)
T 1oyw_A 231 VQE---QRGKSGIIYCNSRAKVEDTAARLQSKGI----------SAAAYHAGLENNVRADVQEKFQRD---DLQIVVAT- 293 (523)
T ss_dssp HHH---TTTCCEEEECSSHHHHHHHHHHHHHTTC----------CEEEECTTSCHHHHHHHHHHHHTT---SCSEEEEC-
T ss_pred HHh---cCCCcEEEEeCCHHHHHHHHHHHHHCCC----------CEEEecCCCCHHHHHHHHHHHHcC---CCeEEEEe-
Confidence 433 2345799999999999999999986543 2344444443 3789999999986 67899888
Q ss_pred CcccccccccCCCcceEEEEEcCCC
Q psy1221 660 GGKLSEGLNFSDDLGRCVVVMCNSN 684 (690)
Q Consensus 660 gG~~sEGIDf~g~~~r~ViivgLPf 684 (690)
..+.+|||+++ ++.||..++|.
T Consensus 294 -~a~~~GiD~p~--v~~VI~~~~p~ 315 (523)
T 1oyw_A 294 -VAFGMGINKPN--VRFVVHFDIPR 315 (523)
T ss_dssp -TTSCTTTCCTT--CCEEEESSCCS
T ss_pred -chhhCCCCccC--ccEEEEECCCC
Confidence 78999999998 89999999985
No 28
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=97.45 E-value=0.0019 Score=72.99 Aligned_cols=94 Identities=9% Similarity=0.180 Sum_probs=69.7
Q ss_pred HHHHHHHhhh--cccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHh-cCceEEEcCCCc-hhHHHHHHHhhhcccCCc
Q psy1221 577 IAMTITNLCT--IVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIA-KKKVVFREPKKT-SEVDKVLSDYGTSVEKGG 652 (690)
Q Consensus 577 l~~~I~~l~~--~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~-~~~~i~~E~~~~-~~~~~~l~~f~~~~~~~~ 652 (690)
....+.+.+. ..++.++||++|....+.+++.+++. .. ......+-...+ .++..++++|++. +.
T Consensus 325 ~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~--------~~~~~~v~~~h~~~~~~~R~~~~~~f~~g---~~ 393 (563)
T 3i5x_A 325 AVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNE--------FKKDLPILEFHGKITQNKRTSLVKRFKKD---ES 393 (563)
T ss_dssp HHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHH--------HTTTSCEEEESTTSCHHHHHHHHHHHHHC---SS
T ss_pred HHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHh--------ccCCceEEEecCCCCHHHHHHHHHHHhcC---CC
Confidence 3344444333 34568999999999999999998843 11 123344444443 3789999999986 67
Q ss_pred eEEEEeeCcccccccccCCCcceEEEEEcCCCC
Q psy1221 653 ALMLSVIGGKLSEGLNFSDDLGRCVVVMCNSNP 685 (690)
Q Consensus 653 aiLfaV~gG~~sEGIDf~g~~~r~ViivgLPfp 685 (690)
.||+|+ ..+++|||+++ +++||..++|..
T Consensus 394 ~vLvaT--~~~~~GiDip~--v~~VI~~~~p~s 422 (563)
T 3i5x_A 394 GILVCT--DVGARGMDFPN--VHEVLQIGVPSE 422 (563)
T ss_dssp EEEEEC--GGGTSSCCCTT--CCEEEEESCCSS
T ss_pred CEEEEc--chhhcCCCccc--CCEEEEECCCCc
Confidence 899888 88999999998 899999999964
No 29
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=97.44 E-value=0.0015 Score=70.49 Aligned_cols=80 Identities=8% Similarity=0.193 Sum_probs=64.7
Q ss_pred cCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCc-hhHHHHHHHhhhcccCCceEEEEeeCccccccc
Q psy1221 589 PKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKT-SEVDKVLSDYGTSVEKGGALMLSVIGGKLSEGL 667 (690)
Q Consensus 589 ~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~-~~~~~~l~~f~~~~~~~~aiLfaV~gG~~sEGI 667 (690)
++.+|||++|....+.+++.+++.++ ....+-+..+ .++.+.+++|++. +..||+|+ ..+++||
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~~~----------~~~~~h~~~~~~~r~~~~~~f~~g---~~~vlvaT--~~~~~Gi 340 (417)
T 2i4i_A 276 DSLTLVFVETKKGADSLEDFLYHEGY----------ACTSIHGDRSQRDREEALHQFRSG---KSPILVAT--AVAARGL 340 (417)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHTTC----------CEEEECTTSCHHHHHHHHHHHHHT---SSCEEEEC--HHHHTTS
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCC----------CeeEecCCCCHHHHHHHHHHHHcC---CCCEEEEC--ChhhcCC
Confidence 56799999999999999999986543 2445555544 3788999999876 56899988 8899999
Q ss_pred ccCCCcceEEEEEcCCCC
Q psy1221 668 NFSDDLGRCVVVMCNSNP 685 (690)
Q Consensus 668 Df~g~~~r~ViivgLPfp 685 (690)
|+++ +++||..++|..
T Consensus 341 dip~--v~~Vi~~~~p~s 356 (417)
T 2i4i_A 341 DISN--VKHVINFDLPSD 356 (417)
T ss_dssp CCCC--EEEEEESSCCSS
T ss_pred Cccc--CCEEEEEcCCCC
Confidence 9997 889999998853
No 30
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=97.44 E-value=0.0012 Score=70.79 Aligned_cols=81 Identities=6% Similarity=0.087 Sum_probs=65.4
Q ss_pred ccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCc-hhHHHHHHHhhhcccCCceEEEEeeCcccccc
Q psy1221 588 VPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKT-SEVDKVLSDYGTSVEKGGALMLSVIGGKLSEG 666 (690)
Q Consensus 588 ~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~-~~~~~~l~~f~~~~~~~~aiLfaV~gG~~sEG 666 (690)
.++.++||++|....+.+++.+.+.+. +..++-+..+ .++..++++|++. +..||+|+ ..+++|
T Consensus 265 ~~~~~lvf~~~~~~~~~l~~~L~~~~~----------~~~~~~~~~~~~~r~~~~~~f~~g---~~~vlv~T--~~~~~G 329 (412)
T 3fht_A 265 TIAQAMIFCHTRKTASWLAAELSKEGH----------QVALLSGEMMVEQRAAVIERFREG---KEKVLVTT--NVCARG 329 (412)
T ss_dssp SSSEEEEECSSHHHHHHHHHHHHHTTC----------CCEEECTTSCHHHHHHHHHHHHTT---SCSEEEEC--GGGTSS
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhCCC----------eEEEecCCCCHHHHHHHHHHHHCC---CCcEEEEc--CccccC
Confidence 457899999999999999999986542 3455555544 3889999999976 56799888 889999
Q ss_pred cccCCCcceEEEEEcCCCC
Q psy1221 667 LNFSDDLGRCVVVMCNSNP 685 (690)
Q Consensus 667 IDf~g~~~r~ViivgLPfp 685 (690)
||+++ ++.||..++|..
T Consensus 330 idip~--~~~Vi~~~~p~~ 346 (412)
T 3fht_A 330 IDVEQ--VSVVINFDLPVD 346 (412)
T ss_dssp CCCTT--EEEEEESSCCBC
T ss_pred CCccC--CCEEEEECCCCC
Confidence 99997 888999999853
No 31
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=97.41 E-value=0.0027 Score=69.38 Aligned_cols=86 Identities=12% Similarity=0.245 Sum_probs=67.4
Q ss_pred HhhhcccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCc-hhHHHHHHHhhhcccCCceEEEEeeCc
Q psy1221 583 NLCTIVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKT-SEVDKVLSDYGTSVEKGGALMLSVIGG 661 (690)
Q Consensus 583 ~l~~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~-~~~~~~l~~f~~~~~~~~aiLfaV~gG 661 (690)
+++...++++|||+++....+.+++.+.+.++ +...+-+... .++++.+++|++. +..||+|+ .
T Consensus 294 ~~l~~~~~~~lVF~~t~~~a~~l~~~L~~~~~----------~~~~lhg~~~~~~R~~~l~~F~~g---~~~vLvaT--~ 358 (434)
T 2db3_A 294 EILSEQADGTIVFVETKRGADFLASFLSEKEF----------PTTSIHGDRLQSQREQALRDFKNG---SMKVLIAT--S 358 (434)
T ss_dssp HHHHHCCTTEEEECSSHHHHHHHHHHHHHTTC----------CEEEESTTSCHHHHHHHHHHHHTS---SCSEEEEC--G
T ss_pred HHHHhCCCCEEEEEeCcHHHHHHHHHHHhCCC----------CEEEEeCCCCHHHHHHHHHHHHcC---CCcEEEEc--h
Confidence 33444556799999999999999999986543 2445555443 3789999999886 56899888 8
Q ss_pred ccccccccCCCcceEEEEEcCCCC
Q psy1221 662 KLSEGLNFSDDLGRCVVVMCNSNP 685 (690)
Q Consensus 662 ~~sEGIDf~g~~~r~ViivgLPfp 685 (690)
.+++|||+++ +++||..++|..
T Consensus 359 v~~rGlDi~~--v~~VI~~d~p~~ 380 (434)
T 2db3_A 359 VASRGLDIKN--IKHVINYDMPSK 380 (434)
T ss_dssp GGTSSCCCTT--CCEEEESSCCSS
T ss_pred hhhCCCCccc--CCEEEEECCCCC
Confidence 8999999998 788999998853
No 32
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=97.39 E-value=0.0016 Score=61.05 Aligned_cols=92 Identities=7% Similarity=0.055 Sum_probs=69.8
Q ss_pred HHHHHHHHHHhhhcccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCc-hhHHHHHHHhhhcccCCc
Q psy1221 574 LKEIAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKT-SEVDKVLSDYGTSVEKGG 652 (690)
Q Consensus 574 ~~~l~~~I~~l~~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~-~~~~~~l~~f~~~~~~~~ 652 (690)
...+.+.+.+ ..++.+|||+++....+.+.+.+...++ +...+-+..+ .++...+++|++. .-
T Consensus 23 ~~~L~~ll~~---~~~~~~lVF~~~~~~~~~l~~~L~~~~~----------~~~~~hg~~~~~~r~~~~~~f~~g---~~ 86 (163)
T 2hjv_A 23 FSLLKDVLMT---ENPDSCIIFCRTKEHVNQLTDELDDLGY----------PCDKIHGGMIQEDRFDVMNEFKRG---EY 86 (163)
T ss_dssp HHHHHHHHHH---HCCSSEEEECSSHHHHHHHHHHHHHTTC----------CEEEECTTSCHHHHHHHHHHHHTT---SC
T ss_pred HHHHHHHHHh---cCCCcEEEEECCHHHHHHHHHHHHHcCC----------cEEEEeCCCCHHHHHHHHHHHHcC---CC
Confidence 3444444433 3456899999999999999999986543 2445555443 3788999999976 56
Q ss_pred eEEEEeeCcccccccccCCCcceEEEEEcCCCC
Q psy1221 653 ALMLSVIGGKLSEGLNFSDDLGRCVVVMCNSNP 685 (690)
Q Consensus 653 aiLfaV~gG~~sEGIDf~g~~~r~ViivgLPfp 685 (690)
.||+|+ ..+++|+|+++ ++.||..++|..
T Consensus 87 ~vlv~T--~~~~~Gld~~~--~~~Vi~~~~p~~ 115 (163)
T 2hjv_A 87 RYLVAT--DVAARGIDIEN--ISLVINYDLPLE 115 (163)
T ss_dssp SEEEEC--GGGTTTCCCSC--CSEEEESSCCSS
T ss_pred eEEEEC--ChhhcCCchhc--CCEEEEeCCCCC
Confidence 789888 88999999997 788999999864
No 33
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=97.39 E-value=0.0016 Score=68.44 Aligned_cols=88 Identities=16% Similarity=0.172 Sum_probs=69.0
Q ss_pred HHHhhhcccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCc-hhHHHHHHHhhhcccCCceEEEEee
Q psy1221 581 ITNLCTIVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKT-SEVDKVLSDYGTSVEKGGALMLSVI 659 (690)
Q Consensus 581 I~~l~~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~-~~~~~~l~~f~~~~~~~~aiLfaV~ 659 (690)
+.+++...++.+|||++|....+.+++.+++.+. +...+-+..+ .++.+++++|++. +..||+|+
T Consensus 230 l~~~l~~~~~~~lvf~~~~~~~~~l~~~L~~~~~----------~~~~~~~~~~~~~r~~~~~~f~~~---~~~vlv~T- 295 (367)
T 1hv8_A 230 LCRLLKNKEFYGLVFCKTKRDTKELASMLRDIGF----------KAGAIHGDLSQSQREKVIRLFKQK---KIRILIAT- 295 (367)
T ss_dssp HHHHHCSTTCCEEEECSSHHHHHHHHHHHHHTTC----------CEEEECSSSCHHHHHHHHHHHHTT---SSSEEEEC-
T ss_pred HHHHHhcCCCcEEEEECCHHHHHHHHHHHHhcCC----------CeEEeeCCCCHHHHHHHHHHHHcC---CCeEEEEC-
Confidence 3444456677899999999999999999986542 2444555444 3788999999875 56899988
Q ss_pred CcccccccccCCCcceEEEEEcCCCC
Q psy1221 660 GGKLSEGLNFSDDLGRCVVVMCNSNP 685 (690)
Q Consensus 660 gG~~sEGIDf~g~~~r~ViivgLPfp 685 (690)
..+++|+|+++ ++.||..+.|..
T Consensus 296 -~~~~~Gid~~~--~~~Vi~~~~~~s 318 (367)
T 1hv8_A 296 -DVMSRGIDVND--LNCVINYHLPQN 318 (367)
T ss_dssp -TTHHHHCCCSC--CSEEEESSCCSC
T ss_pred -ChhhcCCCccc--CCEEEEecCCCC
Confidence 88999999998 889999998854
No 34
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=97.28 E-value=0.0016 Score=61.06 Aligned_cols=93 Identities=13% Similarity=0.173 Sum_probs=70.0
Q ss_pred HHHHHHHHHHhhhcccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCc-hhHHHHHHHhhhcccCCc
Q psy1221 574 LKEIAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKT-SEVDKVLSDYGTSVEKGG 652 (690)
Q Consensus 574 ~~~l~~~I~~l~~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~-~~~~~~l~~f~~~~~~~~ 652 (690)
.+.+.+.+.+ ..++.+|||+++....+.+.+.++..+. ....+-+..+ .++...+++|++. +.
T Consensus 18 ~~~l~~ll~~---~~~~~~lVF~~~~~~~~~l~~~L~~~~~----------~~~~~~~~~~~~~r~~~~~~f~~g---~~ 81 (165)
T 1fuk_A 18 YECLTDLYDS---ISVTQAVIFCNTRRKVEELTTKLRNDKF----------TVSAIYSDLPQQERDTIMKEFRSG---SS 81 (165)
T ss_dssp HHHHHHHHHH---TTCSCEEEEESSHHHHHHHHHHHHHTTC----------CEEEECTTSCHHHHHHHHHHHHTT---SC
T ss_pred HHHHHHHHHh---CCCCCEEEEECCHHHHHHHHHHHHHcCC----------CEEEEECCCCHHHHHHHHHHHHcC---CC
Confidence 3444444443 2457899999999999999999986542 2344444443 3788999999876 56
Q ss_pred eEEEEeeCcccccccccCCCcceEEEEEcCCCCC
Q psy1221 653 ALMLSVIGGKLSEGLNFSDDLGRCVVVMCNSNPL 686 (690)
Q Consensus 653 aiLfaV~gG~~sEGIDf~g~~~r~ViivgLPfp~ 686 (690)
.||+|+ ..+++|+|+++ ++.||..++|...
T Consensus 82 ~vlv~T--~~~~~G~d~~~--~~~Vi~~~~p~~~ 111 (165)
T 1fuk_A 82 RILIST--DLLARGIDVQQ--VSLVINYDLPANK 111 (165)
T ss_dssp SEEEEE--GGGTTTCCCCS--CSEEEESSCCSSG
T ss_pred EEEEEc--ChhhcCCCccc--CCEEEEeCCCCCH
Confidence 899988 88999999996 7889999998653
No 35
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=97.27 E-value=0.0042 Score=66.51 Aligned_cols=81 Identities=11% Similarity=0.196 Sum_probs=64.0
Q ss_pred ccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCc-hhHHHHHHHhhhcccCCceEEEEeeCcccccc
Q psy1221 588 VPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKT-SEVDKVLSDYGTSVEKGGALMLSVIGGKLSEG 666 (690)
Q Consensus 588 ~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~-~~~~~~l~~f~~~~~~~~aiLfaV~gG~~sEG 666 (690)
.++.+|||++|....+.+++.+++.+. ...++-+..+ .++..++++|++. +..||+|+ ..+++|
T Consensus 257 ~~~~~lVf~~~~~~~~~l~~~L~~~~~----------~~~~~~~~~~~~~r~~~~~~f~~g---~~~vLv~T--~~~~~G 321 (400)
T 1s2m_A 257 QINQAIIFCNSTNRVELLAKKITDLGY----------SCYYSHARMKQQERNKVFHEFRQG---KVRTLVCS--DLLTRG 321 (400)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHHTC----------CEEEECTTSCHHHHHHHHHHHHTT---SSSEEEES--SCSSSS
T ss_pred CCCcEEEEEecHHHHHHHHHHHHhcCC----------CeEEecCCCCHHHHHHHHHHHhcC---CCcEEEEc--CccccC
Confidence 457899999999999999999986432 2444555444 3788999999875 56899988 889999
Q ss_pred cccCCCcceEEEEEcCCCC
Q psy1221 667 LNFSDDLGRCVVVMCNSNP 685 (690)
Q Consensus 667 IDf~g~~~r~ViivgLPfp 685 (690)
||+++ ++.||..++|..
T Consensus 322 idip~--~~~Vi~~~~p~s 338 (400)
T 1s2m_A 322 IDIQA--VNVVINFDFPKT 338 (400)
T ss_dssp CCCTT--EEEEEESSCCSS
T ss_pred CCccC--CCEEEEeCCCCC
Confidence 99995 778999888853
No 36
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=97.24 E-value=0.001 Score=64.41 Aligned_cols=88 Identities=14% Similarity=0.156 Sum_probs=68.7
Q ss_pred HHHhhhcccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCc-hhHHHHHHHhhhcccCCceEEEEee
Q psy1221 581 ITNLCTIVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKT-SEVDKVLSDYGTSVEKGGALMLSVI 659 (690)
Q Consensus 581 I~~l~~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~-~~~~~~l~~f~~~~~~~~aiLfaV~ 659 (690)
|.+++...++.+|||+++....+.+.+.++..++ +...+-+..+ .++.+.+++|++. +-.||+|+
T Consensus 46 L~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~g~----------~~~~lhg~~~~~~R~~~l~~F~~g---~~~vLvaT- 111 (191)
T 2p6n_A 46 LLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGV----------EAVAIHGGKDQEERTKAIEAFREG---KKDVLVAT- 111 (191)
T ss_dssp HHHHHTTSCSCEEEECSCHHHHHHHHHHHHHHTC----------CEEEECTTSCHHHHHHHHHHHHHT---SCSEEEEC-
T ss_pred HHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcCC----------cEEEEeCCCCHHHHHHHHHHHhcC---CCEEEEEc-
Confidence 4445555677899999999999999999986543 2445555544 3789999999976 56789888
Q ss_pred CcccccccccCCCcceEEEEEcCCCC
Q psy1221 660 GGKLSEGLNFSDDLGRCVVVMCNSNP 685 (690)
Q Consensus 660 gG~~sEGIDf~g~~~r~ViivgLPfp 685 (690)
..+++|||+++ ++.||...+|..
T Consensus 112 -~~~~~Gldi~~--v~~VI~~d~p~~ 134 (191)
T 2p6n_A 112 -DVASKGLDFPA--IQHVINYDMPEE 134 (191)
T ss_dssp -HHHHTTCCCCC--CSEEEESSCCSS
T ss_pred -CchhcCCCccc--CCEEEEeCCCCC
Confidence 88999999987 779999998853
No 37
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=97.21 E-value=0.0057 Score=65.72 Aligned_cols=80 Identities=14% Similarity=0.210 Sum_probs=64.4
Q ss_pred ccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCc-hhHHHHHHHhhhcccCCceEEEEeeCcccccc
Q psy1221 588 VPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKT-SEVDKVLSDYGTSVEKGGALMLSVIGGKLSEG 666 (690)
Q Consensus 588 ~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~-~~~~~~l~~f~~~~~~~~aiLfaV~gG~~sEG 666 (690)
..+.+|||++|....+.+++.+++.+. +...+-+..+ .++.+++++|++. +..||+|+ ..+++|
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~~~----------~~~~~h~~~~~~~r~~~~~~f~~g---~~~vlv~T--~~~~~G 339 (410)
T 2j0s_A 275 TITQAVIFCNTKRKVDWLTEKMREANF----------TVSSMHGDMPQKERESIMKEFRSG---ASRVLIST--DVWARG 339 (410)
T ss_dssp TSSEEEEECSSHHHHHHHHHHHHHTTC----------CCEEECTTSCHHHHHHHHHHHHHT---SSCEEEEC--GGGSSS
T ss_pred CCCcEEEEEcCHHHHHHHHHHHHhCCC----------ceEEeeCCCCHHHHHHHHHHHHCC---CCCEEEEC--ChhhCc
Confidence 456899999999999999999986543 2444555444 3789999999986 56799888 889999
Q ss_pred cccCCCcceEEEEEcCCC
Q psy1221 667 LNFSDDLGRCVVVMCNSN 684 (690)
Q Consensus 667 IDf~g~~~r~ViivgLPf 684 (690)
||+++ +++||..++|.
T Consensus 340 idi~~--v~~Vi~~~~p~ 355 (410)
T 2j0s_A 340 LDVPQ--VSLIINYDLPN 355 (410)
T ss_dssp CCCTT--EEEEEESSCCS
T ss_pred CCccc--CCEEEEECCCC
Confidence 99995 78899999884
No 38
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=97.12 E-value=0.0029 Score=59.98 Aligned_cols=80 Identities=9% Similarity=0.096 Sum_probs=64.5
Q ss_pred ccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCc-hhHHHHHHHhhhcccCCceEEEEeeCcccccc
Q psy1221 588 VPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKT-SEVDKVLSDYGTSVEKGGALMLSVIGGKLSEG 666 (690)
Q Consensus 588 ~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~-~~~~~~l~~f~~~~~~~~aiLfaV~gG~~sEG 666 (690)
.++.+|||+++....+.+.+.+...+. +...+-+..+ .++..++++|+.. .-.||+|+ ..+++|
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~L~~~~~----------~~~~~~g~~~~~~R~~~~~~f~~g---~~~vLvaT--~~~~~G 97 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVEMIQDGH----------QVSLLSGELTVEQRASIIQRFRDG---KEKVLITT--NVCARG 97 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHTTTC----------CEEEECSSCCHHHHHHHHHHHHTT---SCSEEEEC--CSCCTT
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHcCC----------cEEEEeCCCCHHHHHHHHHHHHcC---CCeEEEEe--cchhcC
Confidence 356799999999999999999986543 2444555444 3788999999975 56799888 889999
Q ss_pred cccCCCcceEEEEEcCCC
Q psy1221 667 LNFSDDLGRCVVVMCNSN 684 (690)
Q Consensus 667 IDf~g~~~r~ViivgLPf 684 (690)
||+++ ++.||..++|.
T Consensus 98 id~~~--~~~Vi~~d~p~ 113 (175)
T 2rb4_A 98 IDVKQ--VTIVVNFDLPV 113 (175)
T ss_dssp TCCTT--EEEEEESSCCC
T ss_pred CCccc--CCEEEEeCCCC
Confidence 99997 89999999984
No 39
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=97.05 E-value=0.0037 Score=59.15 Aligned_cols=80 Identities=8% Similarity=0.065 Sum_probs=64.2
Q ss_pred ccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCc-hhHHHHHHHhhhcccCCceEEEEeeCcccccc
Q psy1221 588 VPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKT-SEVDKVLSDYGTSVEKGGALMLSVIGGKLSEG 666 (690)
Q Consensus 588 ~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~-~~~~~~l~~f~~~~~~~~aiLfaV~gG~~sEG 666 (690)
.++.++||+++....+.+++.+...++ +...+-+..+ .++...+++|++. .-.||+|+ ..+++|
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~~~----------~~~~~hg~~~~~~r~~~~~~f~~g---~~~vLvaT--~~~~~G 94 (172)
T 1t5i_A 30 EFNQVVIFVKSVQRCIALAQLLVEQNF----------PAIAIHRGMPQEERLSRYQQFKDF---QRRILVAT--NLFGRG 94 (172)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHTTC----------CEEEECTTSCHHHHHHHHHHHHTT---SCSEEEES--SCCSTT
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCC----------CEEEEECCCCHHHHHHHHHHHHCC---CCcEEEEC--CchhcC
Confidence 456799999999999999999986543 2444555443 3788999999975 56889888 889999
Q ss_pred cccCCCcceEEEEEcCCC
Q psy1221 667 LNFSDDLGRCVVVMCNSN 684 (690)
Q Consensus 667 IDf~g~~~r~ViivgLPf 684 (690)
+|+++ ++.||..++|.
T Consensus 95 ldi~~--~~~Vi~~d~p~ 110 (172)
T 1t5i_A 95 MDIER--VNIAFNYDMPE 110 (172)
T ss_dssp CCGGG--CSEEEESSCCS
T ss_pred cchhh--CCEEEEECCCC
Confidence 99986 78899999885
No 40
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=97.00 E-value=0.00083 Score=77.56 Aligned_cols=129 Identities=12% Similarity=0.022 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHhCCCceEEEecCCCCCCCCcceeEEEEEEcCCCcc---eEeeccchhhhhhhcCCCCCCCCccchh
Q psy1221 46 GLEAIKLLFHYCQIYGLKDTIVFDLSLARGLDYYTGVIYEAVLKDQAVG---SVAGGGRYDNLVGMFDPKNKTTPCVAAK 122 (690)
Q Consensus 46 ~l~~l~~~~~~l~~~g~~~~i~~d~~~~r~~~YYtG~vFe~~~~~~~~~---~i~~GGRYD~L~~~f~~~~~~~~~~g~~ 122 (690)
.-++++++...|...| +-.+.+| |++|++........ .-..|||| +|++
T Consensus 469 ~~~~~~~l~~~L~~~g-~i~i~vd-----------Gt~Fei~~~~~~~~~y~~~~~Ggry-------------~P~V--- 520 (693)
T 2zt5_A 469 DECYITEMEMLLNEKG-EFTIETE-----------GKTFQLTKDMINVKRFQKTLYVEEV-------------VPNV--- 520 (693)
T ss_dssp -------------------------------------------------------CCEEE-------------CCEE---
T ss_pred hHHHHHHHHHHHHhcC-CEEEEEC-----------CEEEEecccccceeeEEeccCCcEe-------------cCcc---
Confidence 4456777777788877 2225555 78898864321000 11245555 4654
Q ss_pred hhhhhhcccccccCcceeeeeHHHHHHHHHhhhhc------c--C--CcccCCceeEEEEeCCcc--chHHHHhHhhhhh
Q psy1221 123 LLHEVQGLLETSCRSCREDIGVERLFSIIENRNAE------Q--G--VKVKTTSTQVYVASAQKN--LVEPRMQLCHELW 190 (690)
Q Consensus 123 ~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~------~--~--~~~~~~~~~v~v~~~~~~--~~~~~~~l~~~L~ 190 (690)
+|+++|++||+.++...+.. . + ...+..+.+|+|++.++. ....+.+|++.|+
T Consensus 521 ---------------i~~s~GigRli~aLie~~~~~~~~~~~r~g~~~P~~lAP~qV~Vipl~~~~~~~~~A~~l~~~Lr 585 (693)
T 2zt5_A 521 ---------------IEPSFGLGRIMYTVFEHTFHVREGDEQRTFFSFPAVVAPFKCSVLPLSQNQEFMPFVKELSEALT 585 (693)
T ss_dssp ---------------EEEEEEHHHHHHHHHHHHEEECSSTTCCEEECCCTTTSSCSEEEEESCCSTTTHHHHHHHHHHHH
T ss_pred ---------------eeCeehHHHHHHHHHHHhccccccccccccccCCCCCCCCeEEEEEecCcHHHHHHHHHHHHHHH
Confidence 25899999999988543111 0 1 112235689999999865 6778899999999
Q ss_pred cCC-cccCCcccccHHHHHhhhhhcCCC
Q psy1221 191 GGE-KTQEKPKLSGLQSFLKGVQENNPN 217 (690)
Q Consensus 191 ~~~-i~~~~~~~~~Lk~~lk~~~kl~~~ 217 (690)
..+ .+..+....++...++.+++.+..
T Consensus 586 ~~Gi~v~~D~~~~sigkk~k~Ad~~G~p 613 (693)
T 2zt5_A 586 RHGVSHKVDDSSGSIGRRYARTDEIGVA 613 (693)
T ss_dssp HTTCCEEECCCCSCHHHHHHHHHHTTCC
T ss_pred HCCCEEEEECCCCCHHHHHHHHHHcCCC
Confidence 954 445566667899999999988743
No 41
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=96.98 E-value=0.0055 Score=65.72 Aligned_cols=81 Identities=12% Similarity=0.180 Sum_probs=58.0
Q ss_pred ccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCc-hhHHHHHHHhhhcccCCceEEEEeeCcccccc
Q psy1221 588 VPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKT-SEVDKVLSDYGTSVEKGGALMLSVIGGKLSEG 666 (690)
Q Consensus 588 ~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~-~~~~~~l~~f~~~~~~~~aiLfaV~gG~~sEG 666 (690)
..+.+|||+++....+.+++.+++.+. ....+-+..+ .++.+++++|++. ...||+|+ ..+++|
T Consensus 279 ~~~~~lvf~~~~~~~~~l~~~l~~~~~----------~~~~~h~~~~~~~r~~~~~~f~~g---~~~vlv~T--~~~~~G 343 (414)
T 3eiq_A 279 TITQAVIFINTRRKVDWLTEKMHARDF----------TVSAMHGDMDQKERDVIMREFRSG---SSRVLITT--DLLARG 343 (414)
T ss_dssp CCSSCEEECSCHHHHHHHHHHHHTTTC----------CCEEC---CHHHHHHHHHHHHSCC------CEEEC--SSCC--
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHhcCC----------eEEEecCCCCHHHHHHHHHHHHcC---CCcEEEEC--CccccC
Confidence 457899999999999999999986543 2334444433 3788999999875 56788888 889999
Q ss_pred cccCCCcceEEEEEcCCCC
Q psy1221 667 LNFSDDLGRCVVVMCNSNP 685 (690)
Q Consensus 667 IDf~g~~~r~ViivgLPfp 685 (690)
||+++ +++||..++|..
T Consensus 344 idip~--v~~Vi~~~~p~s 360 (414)
T 3eiq_A 344 IDVQQ--VSLVINYDLPTN 360 (414)
T ss_dssp CCGGG--CSCEEESSCCSS
T ss_pred CCccC--CCEEEEeCCCCC
Confidence 99986 677999998864
No 42
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=96.80 E-value=0.0068 Score=58.10 Aligned_cols=92 Identities=7% Similarity=0.123 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhhhcccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCc-hhHHHHHHHhhhcccCCc
Q psy1221 574 LKEIAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKT-SEVDKVLSDYGTSVEKGG 652 (690)
Q Consensus 574 ~~~l~~~I~~l~~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~-~~~~~~l~~f~~~~~~~~ 652 (690)
...+.+.|.+. ..++.+|||+++....+.+.+.++..++ ....+-+..+ .++...+++|+.. +-
T Consensus 33 ~~~L~~ll~~~--~~~~k~lVF~~~~~~~~~l~~~L~~~g~----------~~~~lhg~~~~~~r~~~~~~f~~g---~~ 97 (185)
T 2jgn_A 33 RSFLLDLLNAT--GKDSLTLVFVETKKGADSLEDFLYHEGY----------ACTSIHGDRSQRDREEALHQFRSG---KS 97 (185)
T ss_dssp HHHHHHHHHHC---CCSCEEEEESCHHHHHHHHHHHHHTTC----------CEEEEC--------CHHHHHHHHT---SS
T ss_pred HHHHHHHHHhc--CCCCeEEEEECCHHHHHHHHHHHHHcCC----------ceEEEeCCCCHHHHHHHHHHHHcC---CC
Confidence 34444444432 1356799999999999999999986543 2344444433 3678899999876 56
Q ss_pred eEEEEeeCcccccccccCCCcceEEEEEcCCC
Q psy1221 653 ALMLSVIGGKLSEGLNFSDDLGRCVVVMCNSN 684 (690)
Q Consensus 653 aiLfaV~gG~~sEGIDf~g~~~r~ViivgLPf 684 (690)
.||+|+ ..+++|+|+++ ++.||...+|.
T Consensus 98 ~vLvaT--~~~~~Gldi~~--~~~VI~~d~p~ 125 (185)
T 2jgn_A 98 PILVAT--AVAARGLDISN--VKHVINFDLPS 125 (185)
T ss_dssp SEEEEE--C------CCCS--BSEEEESSCCS
T ss_pred eEEEEc--ChhhcCCCccc--CCEEEEeCCCC
Confidence 799988 88999999996 78899988885
No 43
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=96.80 E-value=0.0064 Score=59.62 Aligned_cols=81 Identities=11% Similarity=0.093 Sum_probs=64.9
Q ss_pred ccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCc-hhHHHHHHHhhhcccCCceEEEEeeCcccccc
Q psy1221 588 VPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKT-SEVDKVLSDYGTSVEKGGALMLSVIGGKLSEG 666 (690)
Q Consensus 588 ~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~-~~~~~~l~~f~~~~~~~~aiLfaV~gG~~sEG 666 (690)
.++.+|||+++....+.+.+.+...++ ....+-+..+ .++..++++|+.. .-.||+|+ ..+++|
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~~~----------~~~~lhg~~~~~~r~~~~~~f~~g---~~~vlvaT--~~~~~G 94 (212)
T 3eaq_A 30 SPDRAMVFTRTKAETEEIAQGLLRLGH----------PAQALHGDLSQGERERVLGAFRQG---EVRVLVAT--DVAARG 94 (212)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHHTC----------CEEEECSSSCHHHHHHHHHHHHSS---SCCEEEEC--TTTTCS
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCC----------CEEEEECCCCHHHHHHHHHHHHCC---CCeEEEec--ChhhcC
Confidence 478999999999999999999986443 2344444443 3789999999876 56799888 899999
Q ss_pred cccCCCcceEEEEEcCCCC
Q psy1221 667 LNFSDDLGRCVVVMCNSNP 685 (690)
Q Consensus 667 IDf~g~~~r~ViivgLPfp 685 (690)
||+++ ++.||..++|..
T Consensus 95 idi~~--v~~Vi~~~~p~~ 111 (212)
T 3eaq_A 95 LDIPQ--VDLVVHYRLPDR 111 (212)
T ss_dssp SSCCC--BSEEEESSCCSS
T ss_pred CCCcc--CcEEEECCCCcC
Confidence 99986 889999998853
No 44
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=96.76 E-value=0.0016 Score=72.82 Aligned_cols=80 Identities=11% Similarity=0.144 Sum_probs=51.6
Q ss_pred ccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCc-hhHHHHHHHhhhcccCCceEEEEeeCcccccc
Q psy1221 588 VPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKT-SEVDKVLSDYGTSVEKGGALMLSVIGGKLSEG 666 (690)
Q Consensus 588 ~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~-~~~~~~l~~f~~~~~~~~aiLfaV~gG~~sEG 666 (690)
.++.+|||+++....+.+++.+.+.+. +..+.-.... .++..++++|++. +..||+|+ ..+++|
T Consensus 356 ~~~~~LVF~~s~~~a~~l~~~L~~~~~----------~v~~~hg~~~~~~R~~il~~f~~g---~~~VLVaT--~~l~~G 420 (508)
T 3fho_A 356 TIGQSIIFCKKKDTAEEIARRMTADGH----------TVACLTGNLEGAQRDAIMDSFRVG---TSKVLVTT--NVIARG 420 (508)
T ss_dssp -CCCEEEBCSSTTTTTHHHHHHTTTTC----------CCCEEC-----CTTGGGTHHHHSS---SCCCCEEC--C-----
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhCCC----------cEEEEeCCCCHHHHHHHHHHHHCC---CCeEEEeC--ChhhcC
Confidence 457899999999999999998886432 2233333322 3567889999875 56799988 789999
Q ss_pred cccCCCcceEEEEEcCCC
Q psy1221 667 LNFSDDLGRCVVVMCNSN 684 (690)
Q Consensus 667 IDf~g~~~r~ViivgLPf 684 (690)
||+++ +++||..+.|.
T Consensus 421 iDip~--v~~VI~~~~p~ 436 (508)
T 3fho_A 421 IDVSQ--VNLVVNYDMPL 436 (508)
T ss_dssp CCCTT--CCEEEC----C
T ss_pred CCccC--CCEEEEECCCC
Confidence 99998 88899999884
No 45
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=96.64 E-value=0.0079 Score=65.38 Aligned_cols=96 Identities=11% Similarity=0.098 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHhhh-cccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcC--------CCc-hhHHHHH
Q psy1221 572 DTLKEIAMTITNLCT-IVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREP--------KKT-SEVDKVL 641 (690)
Q Consensus 572 ~~~~~l~~~I~~l~~-~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~--------~~~-~~~~~~l 641 (690)
.-...+.+.|.+... ..++.+|||+++...++.+.+.++..++ +...+.+ ..+ .++.+++
T Consensus 343 ~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~----------~~~~~~g~~~~~~~~~~~~~~r~~~~ 412 (494)
T 1wp9_A 343 PKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGI----------KAKRFVGQASKENDRGLSQREQKLIL 412 (494)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTC----------CEEEECCSSCC-------CCHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCC----------CcEEEeccccccccccCCHHHHHHHH
Confidence 345566677766554 3577899999999999999999986543 3445554 322 3789999
Q ss_pred HHhhhcccCCceEEEEeeCcccccccccCCCcceEEEEEcCCC
Q psy1221 642 SDYGTSVEKGGALMLSVIGGKLSEGLNFSDDLGRCVVVMCNSN 684 (690)
Q Consensus 642 ~~f~~~~~~~~aiLfaV~gG~~sEGIDf~g~~~r~ViivgLPf 684 (690)
++|++. +..||+|+ ..++||||+++ ++.||..+.|.
T Consensus 413 ~~F~~~---~~~vLv~T--~~~~~Gldl~~--~~~Vi~~d~~~ 448 (494)
T 1wp9_A 413 DEFARG---EFNVLVAT--SVGEEGLDVPE--VDLVVFYEPVP 448 (494)
T ss_dssp HHHHHT---SCSEEEEC--GGGGGGGGSTT--CCEEEESSCCH
T ss_pred HHHhcC---CceEEEEC--CccccCCCchh--CCEEEEeCCCC
Confidence 999986 56789888 88999999998 89999998874
No 46
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=96.47 E-value=0.018 Score=61.99 Aligned_cols=75 Identities=17% Similarity=0.334 Sum_probs=57.6
Q ss_pred ccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceE-EEcCCCchhHHHHHHHhhhcccCCceEEEE----eeCcc
Q psy1221 588 VPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVV-FREPKKTSEVDKVLSDYGTSVEKGGALMLS----VIGGK 662 (690)
Q Consensus 588 ~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i-~~E~~~~~~~~~~l~~f~~~~~~~~aiLfa----V~gG~ 662 (690)
.++.+|||+++....+.+++.++..++. .. .+- +.++ + +++|++. +-.||+| + ..
T Consensus 251 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~----------~~~~~h---~~~r-~-~~~f~~g---~~~vLvat~s~T--~~ 310 (414)
T 3oiy_A 251 FRDGILIFAQTEEEGKELYEYLKRFKFN----------VGETWS---EFEK-N-FEDFKVG---KINILIGVQAYY--GK 310 (414)
T ss_dssp HCSSEEEEESSHHHHHHHHHHHHHTTCC----------EEESSS---CHHH-H-HHHHHTT---SCSEEEEECCTT--CC
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHcCCc----------eehhhc---Ccch-H-HHHHhCC---CCeEEEEecCcC--ch
Confidence 5689999999999999999999865432 11 111 1233 3 9999886 5689988 6 78
Q ss_pred cccccccCCCcceEEEEEcCC
Q psy1221 663 LSEGLNFSDDLGRCVVVMCNS 683 (690)
Q Consensus 663 ~sEGIDf~g~~~r~ViivgLP 683 (690)
+++|||+|+ .+++||..++|
T Consensus 311 ~~~GiDip~-~v~~VI~~~~p 330 (414)
T 3oiy_A 311 LTRGVDLPE-RIKYVIFWGTP 330 (414)
T ss_dssp CCCCCCCTT-TCCEEEEESCC
T ss_pred hhccCcccc-ccCEEEEECCC
Confidence 999999996 35789999999
No 47
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=96.37 E-value=0.039 Score=64.12 Aligned_cols=163 Identities=10% Similarity=0.104 Sum_probs=88.0
Q ss_pred hhHHHHHhh--cceEEEeCCCCCchhhHHHHhhccCCCCCCceEEEEeCCCccCCCeeEEEeecCCCCcceeeeccccCC
Q psy1221 493 NHFTDIVQD--ARSIIVAGGTMEPVSEFKDQLFGSLGVPESRIHHFSCGHVIPKENILPLILCSGPTNRKFDLTFENRTK 570 (690)
Q Consensus 493 ~~~~~~~~~--~~svil~SgTLsP~~~f~~~l~~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 570 (690)
..++.++.. ...+|++|||+.+.+.+.+++.. + . ......|++-+ ..+...+.....+...|.....
T Consensus 164 ~~l~~i~~~~~~~~ii~lSATl~n~~~~~~~l~~----~---~-~~~~~r~~~l~---~~~~~~~~~~~~~~~~~~~~~~ 232 (715)
T 2va8_A 164 PVVESVTIRAKRRNLLALSATISNYKQIAKWLGA----E---P-VATNWRPVPLI---EGVIYPERKKKEYNVIFKDNTT 232 (715)
T ss_dssp HHHHHHHHHHHTSEEEEEESCCTTHHHHHHHHTC----E---E-EECCCCSSCEE---EEEEEECSSTTEEEEEETTSCE
T ss_pred hHHHHHHHhcccCcEEEEcCCCCCHHHHHHHhCC----C---c-cCCCCCCCCce---EEEEecCCcccceeeecCcchh
Confidence 345555432 46799999999877888787732 1 1 11111233211 1111111011111222222100
Q ss_pred hHH--HHHHHHHHHHhhhcccCcEEEEeccHHHHHHHHHHHHhcCc----h----------------------hHHHHHh
Q psy1221 571 GDT--LKEIAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYMRDNHF----I----------------------ERIARIA 622 (690)
Q Consensus 571 ~~~--~~~l~~~I~~l~~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~----~----------------------~~~~~~~ 622 (690)
..+ ...+...+.+.++ .++.+|||++|....+.+.+.+.+... . ..+....
T Consensus 233 ~~~~~~~~~~~~~~~~~~-~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 311 (715)
T 2va8_A 233 KKVHGDDAIIAYTLDSLS-KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLI 311 (715)
T ss_dssp EEEESSSHHHHHHHHHHT-TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHH
T ss_pred hhcccchHHHHHHHHHHh-cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHH
Confidence 000 1223344444443 568899999999999999999885310 0 0000001
Q ss_pred cCceEEEcCCCch-hHHHHHHHhhhcccCCceEEEEeeCcccccccccCCC
Q psy1221 623 KKKVVFREPKKTS-EVDKVLSDYGTSVEKGGALMLSVIGGKLSEGLNFSDD 672 (690)
Q Consensus 623 ~~~~i~~E~~~~~-~~~~~l~~f~~~~~~~~aiLfaV~gG~~sEGIDf~g~ 672 (690)
.....+.-.+.+. ++..+.+.|+.. .-.||+|+ ..+.+|||+|+.
T Consensus 312 ~~~v~~~h~~l~~~~r~~v~~~f~~g---~~~vlvaT--~~l~~Gidip~~ 357 (715)
T 2va8_A 312 SKGVAYHHAGLSKALRDLIEEGFRQR---KIKVIVAT--PTLAAGVNLPAR 357 (715)
T ss_dssp TTTEEEECTTSCHHHHHHHHHHHHTT---CSCEEEEC--GGGGGSSCCCBS
T ss_pred hcCEEEECCCCCHHHHHHHHHHHHcC---CCeEEEEC--hHHhcccCCCce
Confidence 1234445554443 788899999876 56888888 889999999973
No 48
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.26 E-value=0.013 Score=68.92 Aligned_cols=144 Identities=13% Similarity=0.129 Sum_probs=89.3
Q ss_pred cceEEEeCCCCCchhhHHHHhhccCCCCCCceEEEEeCCCccCCCeeEEEeecCCCCcceeeeccccCChHHHHHHHHHH
Q psy1221 502 ARSIIVAGGTMEPVSEFKDQLFGSLGVPESRIHHFSCGHVIPKENILPLILCSGPTNRKFDLTFENRTKGDTLKEIAMTI 581 (690)
Q Consensus 502 ~~svil~SgTLsP~~~f~~~l~~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~I 581 (690)
...+|++|||+.+ +.+..++.. ..+... ....++ +...|.......+.....+.+
T Consensus 240 ~~~iIl~SAT~~~-~~l~~~~~~------~~vi~v-~gr~~p-----------------v~~~~~~~~~~~~~~~~l~~l 294 (773)
T 2xau_A 240 DLKIIIMSATLDA-EKFQRYFND------APLLAV-PGRTYP-----------------VELYYTPEFQRDYLDSAIRTV 294 (773)
T ss_dssp TCEEEEEESCSCC-HHHHHHTTS------CCEEEC-CCCCCC-----------------EEEECCSSCCSCHHHHHHHHH
T ss_pred CceEEEEeccccH-HHHHHHhcC------CCcccc-cCcccc-----------------eEEEEecCCchhHHHHHHHHH
Confidence 3579999999954 677665521 112111 111111 122222222334566666666
Q ss_pred HHhhhc-ccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHH------hcCceEEEcCCCc-hhHHHHHHHhh-----hcc
Q psy1221 582 TNLCTI-VPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARI------AKKKVVFREPKKT-SEVDKVLSDYG-----TSV 648 (690)
Q Consensus 582 ~~l~~~-~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~------~~~~~i~~E~~~~-~~~~~~l~~f~-----~~~ 648 (690)
.++... .+|.+|||+++....+.+++.+.+.. ..+ .......+-...+ .++.++++.|+ ..
T Consensus 295 ~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~-----~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g- 368 (773)
T 2xau_A 295 LQIHATEEAGDILLFLTGEDEIEDAVRKISLEG-----DQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRP- 368 (773)
T ss_dssp HHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHH-----HHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSC-
T ss_pred HHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHH-----HhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCC-
Confidence 666544 57899999999999999999887421 111 1112334444433 36777888887 43
Q ss_pred cCCceEEEEeeCcccccccccCCCcceEEEEEcC
Q psy1221 649 EKGGALMLSVIGGKLSEGLNFSDDLGRCVVVMCN 682 (690)
Q Consensus 649 ~~~~aiLfaV~gG~~sEGIDf~g~~~r~ViivgL 682 (690)
...|++|+ ..+..|||++| ++.||-.|+
T Consensus 369 --~~kVlVAT--~iae~GidIp~--v~~VId~g~ 396 (773)
T 2xau_A 369 --GRKVVIST--NIAETSLTIDG--IVYVVDPGF 396 (773)
T ss_dssp --CEEEEEEC--THHHHTCCCTT--EEEEEECSE
T ss_pred --ceEEEEeC--cHHHhCcCcCC--eEEEEeCCC
Confidence 45788887 88999999995 788998887
No 49
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=95.22 E-value=0.00076 Score=63.78 Aligned_cols=82 Identities=9% Similarity=0.122 Sum_probs=62.3
Q ss_pred ccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCC-chhHHHHHHHhhhcccCCceEEEEeeCcccccc
Q psy1221 588 VPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKK-TSEVDKVLSDYGTSVEKGGALMLSVIGGKLSEG 666 (690)
Q Consensus 588 ~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~-~~~~~~~l~~f~~~~~~~~aiLfaV~gG~~sEG 666 (690)
.++.++||+++....+.+++.++..++. ...+-+.. ..++...+++|+.. +-.||+|+ ..+++|
T Consensus 29 ~~~~~iVF~~~~~~~~~l~~~L~~~~~~----------~~~~~g~~~~~~r~~~~~~f~~g---~~~vLvaT--~~~~~G 93 (170)
T 2yjt_D 29 EATRSIVFVRKRERVHELANWLREAGIN----------NCYLEGEMVQGKRNEAIKRLTEG---RVNVLVAT--DVAARG 93 (170)
Confidence 3467999999999999999988864322 22223332 23678899999875 56788888 889999
Q ss_pred cccCCCcceEEEEEcCCCCC
Q psy1221 667 LNFSDDLGRCVVVMCNSNPL 686 (690)
Q Consensus 667 IDf~g~~~r~ViivgLPfp~ 686 (690)
||+++ ++.||..++|...
T Consensus 94 id~~~--~~~Vi~~~~p~~~ 111 (170)
T 2yjt_D 94 IDIPD--VSHVFNFDMPRSG 111 (170)
Confidence 99997 7889999998654
No 50
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=96.20 E-value=0.0028 Score=67.57 Aligned_cols=82 Identities=13% Similarity=0.186 Sum_probs=0.0
Q ss_pred ccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCC-chhHHHHHHHhhhcccCCceEEEEeeCcccccc
Q psy1221 588 VPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKK-TSEVDKVLSDYGTSVEKGGALMLSVIGGKLSEG 666 (690)
Q Consensus 588 ~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~-~~~~~~~l~~f~~~~~~~~aiLfaV~gG~~sEG 666 (690)
..+.++||++|....+.+++.+++.+.. ...+-+.. ..++.+++++|++. +..||+|+ ..+++|
T Consensus 258 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~----------~~~~~~~~~~~~r~~~~~~f~~~---~~~vlv~T--~~~~~G 322 (394)
T 1fuu_A 258 SVTQAVIFCNTRRKVEELTTKLRNDKFT----------VSAIYSDLPQQERDTIMKEFRSG---SSRILIST--DLLARG 322 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHcCCe----------EEEeeCCCCHHHHHHHHHHHHCC---CCcEEEEC--ChhhcC
Confidence 3567999999999999999988864321 22222222 23678899999875 56788888 789999
Q ss_pred cccCCCcceEEEEEcCCCCC
Q psy1221 667 LNFSDDLGRCVVVMCNSNPL 686 (690)
Q Consensus 667 IDf~g~~~r~ViivgLPfp~ 686 (690)
||+++ ++.||..+.|...
T Consensus 323 ldi~~--~~~Vi~~~~p~s~ 340 (394)
T 1fuu_A 323 IDVQQ--VSLVINYDLPANK 340 (394)
T ss_dssp --------------------
T ss_pred CCccc--CCEEEEeCCCCCH
Confidence 99996 7789999988653
No 51
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=96.07 E-value=0.0063 Score=67.37 Aligned_cols=117 Identities=10% Similarity=0.020 Sum_probs=77.2
Q ss_pred CCCCCcceeEEEEEEcCCCcceEeeccchhhhhhhcCCCCCCCCccchhhhhhhhcccccccCcceeeeeHHHHHHHHHh
Q psy1221 74 RGLDYYTGVIYEAVLKDQAVGSVAGGGRYDNLVGMFDPKNKTTPCVAAKLLHEVQGLLETSCRSCREDIGVERLFSIIEN 153 (690)
Q Consensus 74 r~~~YYtG~vFe~~~~~~~~~~i~~GGRYD~L~~~f~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~ 153 (690)
-|-.||+|++|+. + ...+.+.|+||++. -|. ... .++.||++| +||+.+|..
T Consensus 220 dgr~~~~gt~~~l---g-~~~s~~~g~~y~~~---~G~--~~~------------------~~~~~~Gig-eRli~~lie 271 (477)
T 1hc7_A 220 DGKALQAGTSHYL---G-ENFARAFDIKFQDR---DLQ--VKY------------------VHTTSWGLS-WRFIGAIIM 271 (477)
T ss_dssp TSCEEEEEEEEEE---E-THHHHHTTCEEECT---TSC--EEE------------------CEEEEEEEE-THHHHHHHH
T ss_pred CCcEEEEeeeEEc---c-cccccccCeEEECC---CCC--EEe------------------eeEeeccHH-HHHHHHHHH
Confidence 3455788988875 2 23467889999752 121 111 124568999 999998854
Q ss_pred h-hhccCCc--ccCCceeEEEEeCCc-----cchHHHHhHhhhhhcCC-cccCCcc-cccHHHHHhhhhhcCCCC
Q psy1221 154 R-NAEQGVK--VKTTSTQVYVASAQK-----NLVEPRMQLCHELWGGE-KTQEKPK-LSGLQSFLKGVQENNPNL 218 (690)
Q Consensus 154 ~-~~~~~~~--~~~~~~~v~v~~~~~-----~~~~~~~~l~~~L~~~~-i~~~~~~-~~~Lk~~lk~~~kl~~~~ 218 (690)
. +-..+.. .+..+.+|+|++.++ ...+.+.+|++.|+..+ .+..+.. ..++...++.+++.+...
T Consensus 272 ~~~d~~gl~~P~~laP~qV~Iipi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~~~s~g~k~~~a~~~G~p~ 346 (477)
T 1hc7_A 272 THGDDRGLVLPPRLAPIQVVIVPIYKDESRERVLEAAQGLRQALLAQGLRVHLDDRDQHTPGYKFHEWELKGVPF 346 (477)
T ss_dssp HHCBTTBCCCCTTTCSCSEEEEECCCTTTHHHHHHHHHHHHHHHHHTTCCEEECCCSSSCHHHHHHHHHHTTCSE
T ss_pred HhCccccccCCcccCCceEEEEEcCCcchHHHHHHHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHhhcCCCE
Confidence 3 2111111 223568999999875 45678899999999854 4444554 678999999998877643
No 52
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=96.05 E-value=0.039 Score=57.15 Aligned_cols=92 Identities=10% Similarity=0.086 Sum_probs=69.7
Q ss_pred HHHHHHHHHHhhhcccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCc-hhHHHHHHHhhhcccCCc
Q psy1221 574 LKEIAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKT-SEVDKVLSDYGTSVEKGG 652 (690)
Q Consensus 574 ~~~l~~~I~~l~~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~-~~~~~~l~~f~~~~~~~~ 652 (690)
++.+.+.+.. ..++.+|||+++....+.+++.+...++ ....+-+..+ .++..+++.|+.. ..
T Consensus 16 ~~~L~~ll~~---~~~~~~LVF~~t~~~~~~l~~~L~~~g~----------~~~~lhg~l~~~~r~~~~~~f~~g---~~ 79 (300)
T 3i32_A 16 LEVLSDLLYV---ASPDRAMVFTRTKAETEEIAQGLLRLGH----------PAQALHGDMSQGERERVMGAFRQG---EV 79 (300)
T ss_dssp HHHHHHHHHH---HCCSSEEEECSSHHHHHHHHHHHHTTTC----------CEEEECSCCCTHHHHHHHHHHHHT---SC
T ss_pred HHHHHHHHHh---cCCCCEEEEECCHHHHHHHHHHHHhCCC----------CEEEEeCCCCHHHHHHHHHHhhcC---Cc
Confidence 4445554433 2378999999999999999999986543 2344444433 3789999999986 56
Q ss_pred eEEEEeeCcccccccccCCCcceEEEEEcCCCC
Q psy1221 653 ALMLSVIGGKLSEGLNFSDDLGRCVVVMCNSNP 685 (690)
Q Consensus 653 aiLfaV~gG~~sEGIDf~g~~~r~ViivgLPfp 685 (690)
.||+|+ ..+.+|||+++ ++.||..++|..
T Consensus 80 ~vLVaT--~va~~Gidi~~--v~~VI~~d~p~s 108 (300)
T 3i32_A 80 RVLVAT--DVAARGLDIPQ--VDLVVHYRMPDR 108 (300)
T ss_dssp CEEEEC--STTTCSTTCCC--CSEEEESSCCSS
T ss_pred eEEEEe--chhhcCccccc--eeEEEEcCCCCC
Confidence 799888 88999999985 789999999864
No 53
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=95.53 E-value=0.017 Score=63.49 Aligned_cols=119 Identities=11% Similarity=0.019 Sum_probs=75.2
Q ss_pred CCCCCCCcceeEEEEEEcCCCcceEeeccchhhhhhhcCCCCCCCCccchhhhhhhhcccccccCcceeeeeHHHHHHHH
Q psy1221 72 LARGLDYYTGVIYEAVLKDQAVGSVAGGGRYDNLVGMFDPKNKTTPCVAAKLLHEVQGLLETSCRSCREDIGVERLFSII 151 (690)
Q Consensus 72 ~~r~~~YYtG~vFe~~~~~~~~~~i~~GGRYD~L~~~f~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~ 151 (690)
+.-|..++.|++|+.- ...+.+.|+||++- . | +..+ .+++||++| +|++.+|
T Consensus 213 ~~dg~~~e~gt~~~lg----~~~s~~~~~~Y~~~--~-G---~~~~-----------------v~~~~~Gig-eRli~al 264 (459)
T 1nj8_A 213 FPDGRTMQIATVHNLG----QNFSKTFEIIFETP--T-G---DKDY-----------------AYQTCYGIS-DRVIASI 264 (459)
T ss_dssp CTTSCEEEEEEEEEEE----THHHHHTTCEEECT--T-S---SEEE-----------------CEEEEEEEC-THHHHHH
T ss_pred cCCCcEEEEEEEeecc----cccccccCeEEECC--C-C---CEee-----------------eeEeeccHH-HHHHHHH
Confidence 3335556666666421 22367789999862 1 2 1111 134668899 9999988
Q ss_pred Hhh-hhccCC--cccCCceeEEEEeC-C-c---cchHHHHhHhhhhhcCCcccCCcccccHHHHHhhhhhcCCCC
Q psy1221 152 ENR-NAEQGV--KVKTTSTQVYVASA-Q-K---NLVEPRMQLCHELWGGEKTQEKPKLSGLQSFLKGVQENNPNL 218 (690)
Q Consensus 152 ~~~-~~~~~~--~~~~~~~~v~v~~~-~-~---~~~~~~~~l~~~L~~~~i~~~~~~~~~Lk~~lk~~~kl~~~~ 218 (690)
... +-..+. ..+..+.+|+|++. + + ...+.+.+|++.|+..+.+..+....++...++.+++.+...
T Consensus 265 ie~~~d~~gl~~P~~laP~qv~Iipi~~~~~~~~~~~~a~~l~~~Lr~~i~v~~D~~~~~~g~k~~~a~~~G~p~ 339 (459)
T 1nj8_A 265 IAIHGDEKGLILPPIVAPIQVVIVPLIFKGKEDIVMEKAKEIYEKLKGKFRVHIDDRDIRPGRKFNDWEIKGVPL 339 (459)
T ss_dssp HHHHCBTTBCCCCTTSCSSSEEEEECCCSSCHHHHHHHHHHHHHHHHTTSCEEECCSCSCHHHHHHHHHHTTCSE
T ss_pred HHHhCCCceeEcCCcCCCCcEEEEecccCCcHHHHHHHHHHHHHHHhhhcEEEEECCCCCHHHHHHHHHHcCCCE
Confidence 432 211111 12235689999998 5 3 456788999999998733344555578999999998877643
No 54
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=95.48 E-value=0.012 Score=65.48 Aligned_cols=125 Identities=11% Similarity=0.082 Sum_probs=81.1
Q ss_pred EEEecCCCCCCCCcceeEEEEEEcCCCcceEeeccchhhhhhhcCCCCCCCCccchhhhhhhhcccccccCcceeeeeHH
Q psy1221 66 IVFDLSLARGLDYYTGVIYEAVLKDQAVGSVAGGGRYDNLVGMFDPKNKTTPCVAAKLLHEVQGLLETSCRSCREDIGVE 145 (690)
Q Consensus 66 i~~d~~~~r~~~YYtG~vFe~~~~~~~~~~i~~GGRYD~L~~~f~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~ 145 (690)
+.+|..+..|..|+.|.+|+.- ...+.+.|+||++ +. |. ...+ +..||+++ +
T Consensus 239 ~die~~l~~g~~~ei~t~~~lg----~~~a~~~~~ry~~--~~-g~--~~~~------------------h~~g~Gig-e 290 (501)
T 1nj1_A 239 VAFDTLMPDGKTLQIGTVHNLG----QTFARTFEIKFET--PE-GD--HEYV------------------HQTCYGLS-D 290 (501)
T ss_dssp EEEEEECTTSCEEEEEEEEEEE----THHHHHHTCEEEC--TT-SC--EEEC------------------EEEEEEEC-T
T ss_pred eEEEEEcCCCCEEEEEEEEecc----ccchhhcCeEEEC--CC-CC--EEee------------------eeccccHH-H
Confidence 4566666667777777776541 1235677999976 22 32 1112 23569999 9
Q ss_pred HHHHHHHh-hhhccCCc--ccCCceeEEEEeC-C-c---cchHHHHhHhhhhhcCC-cccCCcccccHHHHHhhhhhcCC
Q psy1221 146 RLFSIIEN-RNAEQGVK--VKTTSTQVYVASA-Q-K---NLVEPRMQLCHELWGGE-KTQEKPKLSGLQSFLKGVQENNP 216 (690)
Q Consensus 146 ~l~~~~~~-~~~~~~~~--~~~~~~~v~v~~~-~-~---~~~~~~~~l~~~L~~~~-i~~~~~~~~~Lk~~lk~~~kl~~ 216 (690)
|++.+|.. .+...+.. .+..+.+|+|++. + + ...+.+.+|++.|+..+ .+..+....++...++.+++.+.
T Consensus 291 Rli~aliE~~~d~~Gl~~P~~laP~qV~Iipi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~~s~g~k~~~a~~~G~ 370 (501)
T 1nj1_A 291 RVIASVIAIHGDESGLCLPPDVAAHQVVIVPIIFKKAAEEVMEACRELRSRLEAAGFRVHLDDRDIRAGRKYYEWEMRGV 370 (501)
T ss_dssp HHHHHHHHHTCCSSSEECCTTTSSCSEEEEECCSSSSHHHHHHHHHHHHHHHHTTTCCEEECCCSSCHHHHHHHHHHEEC
T ss_pred HHHHHHHHHcCcccCccCCccccCceEEEEEeccCCchHHHHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHhcCC
Confidence 99988743 32111211 2235678999998 5 4 45678899999999854 44445556789999999887765
Q ss_pred CC
Q psy1221 217 NL 218 (690)
Q Consensus 217 ~~ 218 (690)
..
T Consensus 371 p~ 372 (501)
T 1nj1_A 371 PL 372 (501)
T ss_dssp SE
T ss_pred CE
Confidence 43
No 55
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=95.47 E-value=0.005 Score=67.99 Aligned_cols=80 Identities=6% Similarity=0.080 Sum_probs=0.0
Q ss_pred ccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCC-chhHHHHHHHhhhcccCCceEEEEeeCcccccc
Q psy1221 588 VPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKK-TSEVDKVLSDYGTSVEKGGALMLSVIGGKLSEG 666 (690)
Q Consensus 588 ~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~-~~~~~~~l~~f~~~~~~~~aiLfaV~gG~~sEG 666 (690)
..+.++||++|....+.+++.+...+.. ..++-+.. ..++..++++|++. +..||+|+ ..+++|
T Consensus 332 ~~~~~lvF~~s~~~~~~l~~~L~~~~~~----------v~~lh~~~~~~~R~~~~~~f~~g---~~~iLv~T--~~~~~G 396 (479)
T 3fmp_B 332 TIAQAMIFCHTRKTASWLAAELSKEGHQ----------VALLSGEMMVEQRAAVIERFREG---KEKVLVTT--NVCARG 396 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCceEEEeCcHHHHHHHHHHHHhCCcc----------EEEecCCCCHHHHHHHHHHHHcC---CCcEEEEc--cccccC
Confidence 3467999999999999999988864321 12222222 23678899999876 56789888 889999
Q ss_pred cccCCCcceEEEEEcCCC
Q psy1221 667 LNFSDDLGRCVVVMCNSN 684 (690)
Q Consensus 667 IDf~g~~~r~ViivgLPf 684 (690)
||+|+ +++||..++|.
T Consensus 397 lDip~--v~~VI~~d~p~ 412 (479)
T 3fmp_B 397 IDVEQ--VSVVINFDLPV 412 (479)
T ss_dssp ------------------
T ss_pred Ccccc--CCEEEEecCCC
Confidence 99997 77788899884
No 56
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=95.44 E-value=0.046 Score=62.75 Aligned_cols=75 Identities=12% Similarity=0.075 Sum_probs=55.6
Q ss_pred eHHHHHHHHHhhhhccCCcccCCceeEEEEeCCccchHHHHhHhhhhhcCC-cccCCcccccHHHHHhhhhhcCCCC
Q psy1221 143 GVERLFSIIENRNAEQGVKVKTTSTQVYVASAQKNLVEPRMQLCHELWGGE-KTQEKPKLSGLQSFLKGVQENNPNL 218 (690)
Q Consensus 143 ~~~~l~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~l~~~L~~~~-i~~~~~~~~~Lk~~lk~~~kl~~~~ 218 (690)
++||++.+|-+.... ....+..+.+|+|++.++.....+.++++.||..+ .+..+....++...++.++..+...
T Consensus 517 ~ieR~i~~liE~~~~-~~P~~laP~qv~vipi~~~~~~~a~~v~~~L~~~Gi~v~~D~~~~~~g~kir~a~~~g~p~ 592 (642)
T 1qf6_A 517 SMERFIGILTEEFAG-FFPTWLAPVQVVIMNITDSQSEYVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPY 592 (642)
T ss_dssp EHHHHHHHHHHHHTT-CCCTTTCSSCEEEEESSHHHHHHHHHHHHHHHTTTCCEEEECCSSCHHHHHHHHHHTTCSE
T ss_pred CHHHHHHHHHHHhcC-CCCcccCCceEEEEEeCHHHHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHHcCCCE
Confidence 899999886543211 11233466899999999888889999999999964 4444555678999999998887644
No 57
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=95.42 E-value=0.098 Score=63.12 Aligned_cols=91 Identities=12% Similarity=0.097 Sum_probs=63.9
Q ss_pred hcccCcEEEEeccHHHHHHHHHHHHhcCchh---------HH--------------------HHHhcCceEEEcCCCc-h
Q psy1221 586 TIVPKGMVCFFPSYDYEAIVYNYMRDNHFIE---------RI--------------------ARIAKKKVVFREPKKT-S 635 (690)
Q Consensus 586 ~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~---------~~--------------------~~~~~~~~i~~E~~~~-~ 635 (690)
....+.++||++|....+.+.+.+...++.+ ++ ......+....-.+.. .
T Consensus 333 ~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~ 412 (997)
T 4a4z_A 333 KRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPI 412 (997)
T ss_dssp HTTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHH
T ss_pred hCCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHH
Confidence 3445789999999999999998886543310 00 0111223344444433 3
Q ss_pred hHHHHHHHhhhcccCCceEEEEeeCcccccccccCCCcceEEEEEcCCC
Q psy1221 636 EVDKVLSDYGTSVEKGGALMLSVIGGKLSEGLNFSDDLGRCVVVMCNSN 684 (690)
Q Consensus 636 ~~~~~l~~f~~~~~~~~aiLfaV~gG~~sEGIDf~g~~~r~ViivgLPf 684 (690)
+++.+++.|++. .-.||+|+ -.+++|||+|+ +.||+.++|-
T Consensus 413 ~R~~v~~~F~~G---~~kVLvAT--~~~a~GIDiP~---~~VVi~~~~k 453 (997)
T 4a4z_A 413 VKELIEILFSKG---FIKVLFAT--ETFAMGLNLPT---RTVIFSSIRK 453 (997)
T ss_dssp HHHHHHHHHHTT---CCSEEEEC--THHHHSCCCCC---SEEEESCSEE
T ss_pred HHHHHHHHHHCC---CCcEEEEc--hHhhCCCCCCC---ceEEEecccc
Confidence 788999999986 56899999 78999999998 8888877764
No 58
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=95.39 E-value=0.073 Score=58.51 Aligned_cols=77 Identities=9% Similarity=0.047 Sum_probs=56.5
Q ss_pred eeeeeHHHHHHHHHhh-hhccCCcccCCceeEEEEeCCcc---chHHHHhHhhhhhcC---------------CcccCCc
Q psy1221 139 REDIGVERLFSIIENR-NAEQGVKVKTTSTQVYVASAQKN---LVEPRMQLCHELWGG---------------EKTQEKP 199 (690)
Q Consensus 139 g~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~v~v~~~~~~---~~~~~~~l~~~L~~~---------------~i~~~~~ 199 (690)
+|+ ++||++.+|.+. +.. ...+..+.+|+|++.++. ....+.+|++.|+.. +.++.+.
T Consensus 320 ~~G-g~eRli~~Lie~~~g~--~P~~laP~qv~Vipi~~~~~~~~~~a~~l~~~Lr~~~~~~~~~~~~~~~~Gi~v~~D~ 396 (460)
T 3uh0_A 320 TFG-SIERFMALLIDSNEGR--WPFWLNPYQAVIIPVNTKNVQQLDMCTALQKKLRNELEADDMEPVPLNDWHFNVDLDI 396 (460)
T ss_dssp EEE-EHHHHHHHHHHHHTTC--CCGGGCSCCEEEEESSTTCHHHHHHHHHHHHHHHCCCCTTSSCCCCTTCCCCCEEECC
T ss_pred cch-HHHHHHHHHHHHcCCC--CCCCCCCceEEEEEecCCcHHHHHHHHHHHHHHHcCcccccccccccCCCCEEEEEEC
Confidence 367 899999987653 211 123456789999999887 677889999999986 3344466
Q ss_pred ccccHHHHHhhhhhcCCCC
Q psy1221 200 KLSGLQSFLKGVQENNPNL 218 (690)
Q Consensus 200 ~~~~Lk~~lk~~~kl~~~~ 218 (690)
...++...++.+++.+...
T Consensus 397 ~~~~lg~k~r~Ad~~g~p~ 415 (460)
T 3uh0_A 397 RNEPVGYRIKSAILKNYSY 415 (460)
T ss_dssp CSSCHHHHHHHHHHHTCSE
T ss_pred CCCCHHHHHHHHHHcCCCE
Confidence 6678999999988876543
No 59
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=95.34 E-value=0.28 Score=56.41 Aligned_cols=91 Identities=8% Similarity=0.107 Sum_probs=66.7
Q ss_pred HHHHHHHHHhhhcccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCc-hhHHHHHHHhhhcccCCce
Q psy1221 575 KEIAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKT-SEVDKVLSDYGTSVEKGGA 653 (690)
Q Consensus 575 ~~l~~~I~~l~~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~-~~~~~~l~~f~~~~~~~~a 653 (690)
..+...|.+.. ..++.++||++|....+.+.+.+.+.++. ..++..... .++.+++++|+.. .-.
T Consensus 426 ~~Ll~~l~~~~-~~~~~vlVf~~t~~~ae~L~~~L~~~gi~----------~~~lh~~~~~~~R~~~~~~f~~g---~~~ 491 (664)
T 1c4o_A 426 LDLMEGIRERA-ARGERTLVTVLTVRMAEELTSFLVEHGIR----------ARYLHHELDAFKRQALIRDLRLG---HYD 491 (664)
T ss_dssp HHHHHHHHHHH-HTTCEEEEECSSHHHHHHHHHHHHHTTCC----------EEEECTTCCHHHHHHHHHHHHTT---SCS
T ss_pred HHHHHHHHHHH-hcCCEEEEEECCHHHHHHHHHHHHhcCCC----------ceeecCCCCHHHHHHHHHHhhcC---Cce
Confidence 33444444433 24568999999999999999999875432 333344333 4788999999875 457
Q ss_pred EEEEeeCcccccccccCCCcceEEEEEcCC
Q psy1221 654 LMLSVIGGKLSEGLNFSDDLGRCVVVMCNS 683 (690)
Q Consensus 654 iLfaV~gG~~sEGIDf~g~~~r~ViivgLP 683 (690)
||+|+ ..+++|+|+++ ++.||+.+.+
T Consensus 492 VLvaT--~~l~~GlDip~--v~lVI~~d~d 517 (664)
T 1c4o_A 492 CLVGI--NLLREGLDIPE--VSLVAILDAD 517 (664)
T ss_dssp EEEES--CCCCTTCCCTT--EEEEEETTTT
T ss_pred EEEcc--ChhhcCccCCC--CCEEEEeCCc
Confidence 88887 78999999996 8999999874
No 60
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=95.33 E-value=0.14 Score=62.52 Aligned_cols=105 Identities=10% Similarity=-0.012 Sum_probs=65.2
Q ss_pred HHHHHHHHHhhhcccCcEEEEeccHHHHHHHHHHHHhcCchh---------HH-----------------H---HHhcCc
Q psy1221 575 KEIAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYMRDNHFIE---------RI-----------------A---RIAKKK 625 (690)
Q Consensus 575 ~~l~~~I~~l~~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~---------~~-----------------~---~~~~~~ 625 (690)
..+...+..+.....+.++||++|....+.+...+...++.+ ++ . ......
T Consensus 427 ~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~g 506 (1108)
T 3l9o_A 427 GDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRG 506 (1108)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHT
T ss_pred hHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcC
Confidence 344455555555556789999999999999988876422110 00 0 000011
Q ss_pred eEEEcCCCc-hhHHHHHHHhhhcccCCceEEEEeeCcccccccccCCCcceEEEEEcCCCCC
Q psy1221 626 VVFREPKKT-SEVDKVLSDYGTSVEKGGALMLSVIGGKLSEGLNFSDDLGRCVVVMCNSNPL 686 (690)
Q Consensus 626 ~i~~E~~~~-~~~~~~l~~f~~~~~~~~aiLfaV~gG~~sEGIDf~g~~~r~ViivgLPfp~ 686 (690)
..+.-.+.. .+++.+++.|++. .-.||+|+ ..+++|||+|+ ++.||-...||..
T Consensus 507 V~~~Hg~l~~~~R~~v~~~F~~G---~ikVLVAT--~vla~GIDiP~--v~~VI~~~~~~d~ 561 (1108)
T 3l9o_A 507 IGIHHSGLLPILKEVIEILFQEG---FLKVLFAT--ETFSIGLNMPA--KTVVFTSVRKWDG 561 (1108)
T ss_dssp EEEECSCSCHHHHHHHHHHHHHT---CCCEEEEE--SCCCSCCCC----CEEEESCSEEESS
T ss_pred eeeecCCCCHHHHHHHHHHHhCC---CCeEEEEC--cHHhcCCCCCC--ceEEEecCcccCc
Confidence 344444443 3788999999986 56899999 88999999996 4446544445543
No 61
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=95.27 E-value=0.031 Score=57.84 Aligned_cols=78 Identities=12% Similarity=0.146 Sum_probs=61.2
Q ss_pred hcccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCc-hhHHHHHHHhhhcccCCceEEEEeeCcccc
Q psy1221 586 TIVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKT-SEVDKVLSDYGTSVEKGGALMLSVIGGKLS 664 (690)
Q Consensus 586 ~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~-~~~~~~l~~f~~~~~~~~aiLfaV~gG~~s 664 (690)
...+++++||+++....+.+++.+++ ...+-+..+ .++.+.+++|++. +..||+|+ ..++
T Consensus 217 ~~~~~~~lvf~~~~~~~~~l~~~l~~--------------~~~~~~~~~~~~r~~~~~~f~~~---~~~vlv~T--~~~~ 277 (337)
T 2z0m_A 217 ENKDKGVIVFVRTRNRVAKLVRLFDN--------------AIELRGDLPQSVRNRNIDAFREG---EYDMLITT--DVAS 277 (337)
T ss_dssp TCCCSSEEEECSCHHHHHHHHTTCTT--------------EEEECTTSCHHHHHHHHHHHHTT---SCSEEEEC--HHHH
T ss_pred hCCCCcEEEEEcCHHHHHHHHHHhhh--------------hhhhcCCCCHHHHHHHHHHHHcC---CCcEEEEc--Cccc
Confidence 45678899999999999988766652 233334333 3788999999876 56899988 8899
Q ss_pred cccccCCCcceEEEEEcCCC
Q psy1221 665 EGLNFSDDLGRCVVVMCNSN 684 (690)
Q Consensus 665 EGIDf~g~~~r~ViivgLPf 684 (690)
+|||+++ ++.||..+.|.
T Consensus 278 ~Gid~~~--~~~Vi~~~~~~ 295 (337)
T 2z0m_A 278 RGLDIPL--VEKVINFDAPQ 295 (337)
T ss_dssp TTCCCCC--BSEEEESSCCS
T ss_pred cCCCccC--CCEEEEecCCC
Confidence 9999986 78999999885
No 62
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=95.19 E-value=0.13 Score=63.13 Aligned_cols=80 Identities=5% Similarity=0.202 Sum_probs=61.4
Q ss_pred ccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCch-hHHHHHHHhhhcccCCceEEEEeeCcccccc
Q psy1221 588 VPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKTS-EVDKVLSDYGTSVEKGGALMLSVIGGKLSEG 666 (690)
Q Consensus 588 ~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~~-~~~~~l~~f~~~~~~~~aiLfaV~gG~~sEG 666 (690)
.++.++||+++-...+.+++.+++. +...+..++-++.+. ++++++++|++. +-.||+|+ ..+.+|
T Consensus 811 ~g~qvlvf~~~v~~~~~l~~~L~~~--------~p~~~v~~lhg~~~~~eR~~il~~F~~g---~~~VLVaT--~v~e~G 877 (1151)
T 2eyq_A 811 RGGQVYYLYNDVENIQKAAERLAEL--------VPEARIAIGHGQMRERELERVMNDFHHQ---RFNVLVCT--TIIETG 877 (1151)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHHHH--------CTTSCEEECCSSCCHHHHHHHHHHHHTT---SCCEEEES--STTGGG
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHh--------CCCCeEEEEeCCCCHHHHHHHHHHHHcC---CCcEEEEC--Ccceee
Confidence 3677999999999999999988853 112234455555443 788999999875 56899988 789999
Q ss_pred cccCCCcceEEEEEcC
Q psy1221 667 LNFSDDLGRCVVVMCN 682 (690)
Q Consensus 667 IDf~g~~~r~ViivgL 682 (690)
||+++ +++||+.+.
T Consensus 878 iDip~--v~~VIi~~~ 891 (1151)
T 2eyq_A 878 IDIPT--ANTIIIERA 891 (1151)
T ss_dssp SCCTT--EEEEEETTT
T ss_pred ecccC--CcEEEEeCC
Confidence 99996 778887765
No 63
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=95.15 E-value=0.098 Score=63.80 Aligned_cols=76 Identities=16% Similarity=0.315 Sum_probs=59.1
Q ss_pred ccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceE-EEcCCCchhHHHHHHHhhhcccCCceEEEE----eeCcc
Q psy1221 588 VPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVV-FREPKKTSEVDKVLSDYGTSVEKGGALMLS----VIGGK 662 (690)
Q Consensus 588 ~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i-~~E~~~~~~~~~~l~~f~~~~~~~~aiLfa----V~gG~ 662 (690)
.++.+|||++|-...+.+++.++..++. .. .+. + ++.+ +++|++. +-.||+| + ..
T Consensus 308 ~~~~~LVF~~s~~~a~~l~~~L~~~g~~----------~~~~lh---g-~rr~-l~~F~~G---~~~VLVatas~T--dv 367 (1104)
T 4ddu_A 308 FRDGILIFAQTEEEGKELYEYLKRFKFN----------VGETWS---E-FEKN-FEDFKVG---KINILIGVQAYY--GK 367 (1104)
T ss_dssp HCSSEEEEESSSHHHHHHHHHHHHTTCC----------EEESSS---S-HHHH-HHHHHHT---SCSEEEEETTTH--HH
T ss_pred cCCCEEEEECcHHHHHHHHHHHHhCCCC----------eeeEec---C-cHHH-HHHHHCC---CCCEEEEecCCC--Ce
Confidence 5689999999999999999999865432 11 111 1 3455 9999986 6789998 6 88
Q ss_pred cccccccCCCcceEEEEEcCCC
Q psy1221 663 LSEGLNFSDDLGRCVVVMCNSN 684 (690)
Q Consensus 663 ~sEGIDf~g~~~r~ViivgLPf 684 (690)
+++|||+|+ .+++||-.++|-
T Consensus 368 larGIDip~-~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 368 LTRGVDLPE-RIKYVIFWGTPS 388 (1104)
T ss_dssp HCCSCCCTT-TCCEEEEESCCE
T ss_pred eEecCcCCC-CCCEEEEECCCC
Confidence 999999985 367899999994
No 64
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=95.07 E-value=0.071 Score=59.25 Aligned_cols=102 Identities=9% Similarity=0.154 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhhhc-ccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcC--------CC-chhHHHHHH
Q psy1221 573 TLKEIAMTITNLCTI-VPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREP--------KK-TSEVDKVLS 642 (690)
Q Consensus 573 ~~~~l~~~I~~l~~~-~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~--------~~-~~~~~~~l~ 642 (690)
-.+.+.+.|.+.... .++.+|||.++-...+.+.+.++..+.. .. .+..++-+ .. ..++.++++
T Consensus 372 k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~---~~---~~~~~~~g~~~~~~~~~~~~~~R~~~~~ 445 (555)
T 3tbk_A 372 KLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPAL---SF---LKPGILTGRGRTNRATGMTLPAQKCVLE 445 (555)
T ss_dssp HHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGG---TT---CCEEECCC--------------------
T ss_pred HHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCc---Cc---eeeeEEEecCCcccccccCHHHHHHHHH
Confidence 455666777666543 3578999999999999999999875421 00 01111111 11 137788999
Q ss_pred Hhhh-cccCCceEEEEeeCcccccccccCCCcceEEEEEcCCCCCC
Q psy1221 643 DYGT-SVEKGGALMLSVIGGKLSEGLNFSDDLGRCVVVMCNSNPLR 687 (690)
Q Consensus 643 ~f~~-~~~~~~aiLfaV~gG~~sEGIDf~g~~~r~ViivgLPfp~p 687 (690)
+|++ . .-.||+|+ ..++||||++ .+++||...+|..+.
T Consensus 446 ~F~~~g---~~~vLvaT--~~~~~GlDlp--~v~~VI~~d~p~s~~ 484 (555)
T 3tbk_A 446 AFRASG---DNNILIAT--SVADEGIDIA--ECNLVILYEYVGNVI 484 (555)
T ss_dssp ---------CCSEEEEC--CCTTCCEETT--SCSEEEEESCCSSCC
T ss_pred HHhcCC---CeeEEEEc--chhhcCCccc--cCCEEEEeCCCCCHH
Confidence 9997 4 45788888 8899999999 689999999986543
No 65
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=94.76 E-value=0.038 Score=63.87 Aligned_cols=97 Identities=18% Similarity=0.149 Sum_probs=65.8
Q ss_pred HHHHHHHhhhc-c-cCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCC--------Cc-hhHHHHHHHhh
Q psy1221 577 IAMTITNLCTI-V-PKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPK--------KT-SEVDKVLSDYG 645 (690)
Q Consensus 577 l~~~I~~l~~~-~-~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~--------~~-~~~~~~l~~f~ 645 (690)
+.+.|.+.... . ++.+|||+++....+.+.+.++..... ... ..+...+-+. .+ .++.+++++|+
T Consensus 386 L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l---~~~-g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~ 461 (699)
T 4gl2_A 386 LRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKF---AEV-GVKAHHLIGAGHSSEFKPMTQNEQKEVISKFR 461 (699)
T ss_dssp SHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSC---C------CEECCCSCCCTTCCCCCHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccc---ccc-CcceEEEECCCCccCCCCCCHHHHHHHHHHHh
Confidence 33444443333 2 578999999999999999999864111 000 0123344443 33 38899999998
Q ss_pred hcccCCceEEEEeeCcccccccccCCCcceEEEEEcCCC
Q psy1221 646 TSVEKGGALMLSVIGGKLSEGLNFSDDLGRCVVVMCNSN 684 (690)
Q Consensus 646 ~~~~~~~aiLfaV~gG~~sEGIDf~g~~~r~ViivgLPf 684 (690)
+. +-.||+|+ ..++||||++ .++.||..++|.
T Consensus 462 ~g---~~~VLVaT--~~~~~GIDip--~v~~VI~~d~p~ 493 (699)
T 4gl2_A 462 TG---KINLLIAT--TVAEEGLDIK--ECNIVIRYGLVT 493 (699)
T ss_dssp C------CCSEEE--CSCCTTSCCC--SCCCCEEESCCC
T ss_pred cC---CCcEEEEc--cccccCCccc--cCCEEEEeCCCC
Confidence 85 56799888 8899999999 588899999885
No 66
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=94.70 E-value=0.21 Score=50.82 Aligned_cols=99 Identities=17% Similarity=0.155 Sum_probs=70.3
Q ss_pred HHHHHHHHHHhhhcccCcEEEEeccHHHHHHHHHHHHhc-CchhHHHHHhcCceEEEcCCCc-hhHHHHHHHhhhcccCC
Q psy1221 574 LKEIAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYMRDN-HFIERIARIAKKKVVFREPKKT-SEVDKVLSDYGTSVEKG 651 (690)
Q Consensus 574 ~~~l~~~I~~l~~~~~gg~lVfF~Sy~~l~~v~~~~~~~-~~~~~~~~~~~~~~i~~E~~~~-~~~~~~l~~f~~~~~~~ 651 (690)
+..+.+.|.++.. .+..+|||..+-..++.+.+.+... ++ +...+.+..+ .++++++++|++..+ .
T Consensus 98 ~~~L~~ll~~~~~-~~~kvlIFs~~~~~~~~l~~~L~~~~g~----------~~~~l~G~~~~~~R~~~i~~F~~~~~-~ 165 (271)
T 1z5z_A 98 MIRTMEIIEEALD-EGDKIAIFTQFVDMGKIIRNIIEKELNT----------EVPFLYGELSKKERDDIISKFQNNPS-V 165 (271)
T ss_dssp HHHHHHHHHHHHH-TTCCEEEEESCHHHHHHHHHHHHHHHCS----------CCCEECTTSCHHHHHHHHHHHHHCTT-C
T ss_pred HHHHHHHHHHHHh-CCCeEEEEeccHHHHHHHHHHHHHhcCC----------cEEEEECCCCHHHHHHHHHHhcCCCC-C
Confidence 4556666665543 4568999999989999888888753 32 2344555544 489999999998521 1
Q ss_pred ceEEEEeeCcccccccccCCCcceEEEEEcCCCCCCC
Q psy1221 652 GALMLSVIGGKLSEGLNFSDDLGRCVVVMCNSNPLRV 688 (690)
Q Consensus 652 ~aiLfaV~gG~~sEGIDf~g~~~r~ViivgLPfp~p~ 688 (690)
..+|+++ ...++|||+++ +..||...+|+-+..
T Consensus 166 ~v~L~st--~~~g~Glnl~~--a~~VI~~d~~wnp~~ 198 (271)
T 1z5z_A 166 KFIVLSV--KAGGFGINLTS--ANRVIHFDRWWNPAV 198 (271)
T ss_dssp CEEEEEC--CTTCCCCCCTT--CSEEEECSCCSCTTT
T ss_pred CEEEEeh--hhhcCCcCccc--CCEEEEECCCCChhH
Confidence 2366666 78999999986 899999999976544
No 67
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=94.62 E-value=0.18 Score=57.08 Aligned_cols=105 Identities=11% Similarity=0.068 Sum_probs=68.6
Q ss_pred HHHHHHHHHhhhcc--cCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCchhHHHHHHHhhhcccCCc
Q psy1221 575 KEIAMTITNLCTIV--PKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKTSEVDKVLSDYGTSVEKGG 652 (690)
Q Consensus 575 ~~l~~~I~~l~~~~--~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~~~~~~~l~~f~~~~~~~~ 652 (690)
+.+++.|.+.+... .+.+|||+.+-...+.+++.+++.+.. +..........+-+....++++++++|++.-..-.
T Consensus 423 ~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~--~~~~~~~~~~~i~g~~~~~r~~~l~~F~~~~~~~~ 500 (590)
T 3h1t_A 423 DAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSD--LSRKHPDYVARVTSEEGKIGKGHLSRFQELETSTP 500 (590)
T ss_dssp HHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHH--HHTTCTTSEEECSSTTHHHHHHHHHHHHCTTCCCC
T ss_pred HHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhh--hhccCCCeEEEEeCCChHHHHHHHHHHhCCCCCCC
Confidence 44555565555432 367999999999999999999865421 00001111233333332248999999998521123
Q ss_pred eEEEEeeCcccccccccCCCcceEEEEEcCCCC
Q psy1221 653 ALMLSVIGGKLSEGLNFSDDLGRCVVVMCNSNP 685 (690)
Q Consensus 653 aiLfaV~gG~~sEGIDf~g~~~r~ViivgLPfp 685 (690)
.||+++ ..+++|||+++ +.+||+...|..
T Consensus 501 ~ilvtt--~~l~~GiDip~--v~~Vi~~~~~~s 529 (590)
T 3h1t_A 501 VILTTS--QLLTTGVDAPT--CKNVVLARVVNS 529 (590)
T ss_dssp CEEEES--STTTTTCCCTT--EEEEEEESCCCC
T ss_pred EEEEEC--ChhhcCccchh--eeEEEEEecCCC
Confidence 477777 78999999997 889999888753
No 68
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=94.56 E-value=0.41 Score=55.32 Aligned_cols=80 Identities=11% Similarity=0.083 Sum_probs=53.9
Q ss_pred ccCcEEEEeccHHHHHHHHHHHHhcCc-----hhHHHHH---------------hcCceEEEcCCCc-hhHHHHHHHhhh
Q psy1221 588 VPKGMVCFFPSYDYEAIVYNYMRDNHF-----IERIARI---------------AKKKVVFREPKKT-SEVDKVLSDYGT 646 (690)
Q Consensus 588 ~~gg~lVfF~Sy~~l~~v~~~~~~~~~-----~~~~~~~---------------~~~~~i~~E~~~~-~~~~~~l~~f~~ 646 (690)
.++.+|||++|....+.+.+.+.+... .+..+.+ ......+.-.+.+ .++..+.+.|++
T Consensus 241 ~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~ 320 (702)
T 2p6r_A 241 ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRR 320 (702)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHT
T ss_pred cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHC
Confidence 468899999999999999988874200 0000001 0112333444433 378889999987
Q ss_pred cccCCceEEEEeeCcccccccccCCC
Q psy1221 647 SVEKGGALMLSVIGGKLSEGLNFSDD 672 (690)
Q Consensus 647 ~~~~~~aiLfaV~gG~~sEGIDf~g~ 672 (690)
. .-.||+|+ ..++.|||+|+.
T Consensus 321 g---~~~vlvaT--~~l~~Gidip~~ 341 (702)
T 2p6r_A 321 G---NIKVVVAT--PTLAAGVNLPAR 341 (702)
T ss_dssp T---SCCEEEEC--STTTSSSCCCBS
T ss_pred C---CCeEEEEC--cHHhccCCCCce
Confidence 6 56888888 789999999973
No 69
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=94.51 E-value=0.21 Score=58.06 Aligned_cols=80 Identities=18% Similarity=0.101 Sum_probs=54.3
Q ss_pred ccCcEEEEeccHHHHHHHHHHHHhcCch-----------hH------------HHHHhcCceEEEcCCCc-hhHHHHHHH
Q psy1221 588 VPKGMVCFFPSYDYEAIVYNYMRDNHFI-----------ER------------IARIAKKKVVFREPKKT-SEVDKVLSD 643 (690)
Q Consensus 588 ~~gg~lVfF~Sy~~l~~v~~~~~~~~~~-----------~~------------~~~~~~~~~i~~E~~~~-~~~~~~l~~ 643 (690)
.++.+|||++|....+.+...+.+.... .. +.........+.-.+.+ .++..+.+.
T Consensus 236 ~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~ 315 (720)
T 2zj8_A 236 KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEEN 315 (720)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHH
T ss_pred CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHH
Confidence 4688999999999999999888742100 00 00000112344444443 378889999
Q ss_pred hhhcccCCceEEEEeeCcccccccccCCC
Q psy1221 644 YGTSVEKGGALMLSVIGGKLSEGLNFSDD 672 (690)
Q Consensus 644 f~~~~~~~~aiLfaV~gG~~sEGIDf~g~ 672 (690)
|++. .-.||+|+ ..+++|||+|+.
T Consensus 316 f~~g---~~~vlvaT--~~l~~Gvdip~~ 339 (720)
T 2zj8_A 316 FRKG---IIKAVVAT--PTLSAGINTPAF 339 (720)
T ss_dssp HHTT---SSCEEEEC--STTGGGCCCCBS
T ss_pred HHCC---CCeEEEEC--cHhhccCCCCce
Confidence 9875 56788888 789999999973
No 70
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=94.36 E-value=0.49 Score=54.43 Aligned_cols=153 Identities=13% Similarity=0.154 Sum_probs=90.2
Q ss_pred hhHHHHHhhcceEEEeCCCCCch-hhHHHHhhccCCCCCCceEEEEeCCCccCCCeeEEEeecCCCCcceeeeccccCCh
Q psy1221 493 NHFTDIVQDARSIIVAGGTMEPV-SEFKDQLFGSLGVPESRIHHFSCGHVIPKENILPLILCSGPTNRKFDLTFENRTKG 571 (690)
Q Consensus 493 ~~~~~~~~~~~svil~SgTLsP~-~~f~~~l~~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 571 (690)
..++..+.....+..|+||+.+- +.|... +|++ +.. .|.--|.... +-+ ...|.+ ..
T Consensus 400 IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~i----Y~l~---vv~--IPtnkp~~R~------d~~-----d~vy~t--~~ 457 (822)
T 3jux_A 400 ITFQNYFRMYEKLAGMTGTAKTEESEFVQV----YGME---VVV--IPTHKPMIRK------DHD-----DLVFRT--QK 457 (822)
T ss_dssp ECHHHHHTTSSEEEEEESSCGGGHHHHHHH----SCCC---EEE--CCCSSCCCCE------ECC-----CEEESS--HH
T ss_pred HHHHHHHHHhhHHeEECCCCchHHHHHHHH----hCCe---EEE--ECCCCCccee------ecC-----cEEEec--HH
Confidence 56788888888999999999653 334333 3443 222 2211110000 000 011222 23
Q ss_pred HHHHHHHHHHHHhhhcccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCchhHHHHHHHhhhcccCC
Q psy1221 572 DTLKEIAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKTSEVDKVLSDYGTSVEKG 651 (690)
Q Consensus 572 ~~~~~l~~~I~~l~~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~~~~~~~l~~f~~~~~~~ 651 (690)
+-..++.+.|.+.. ..+..+|||+.|....+.+.+.+++.++. ...+-.+ ..+++..+-.+.-. .
T Consensus 458 eK~~al~~~I~~~~-~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~----------~~vLhgk-q~~rE~~ii~~ag~---~ 522 (822)
T 3jux_A 458 EKYEKIVEEIEKRY-KKGQPVLVGTTSIEKSELLSSMLKKKGIP----------HQVLNAK-YHEKEAEIVAKAGQ---K 522 (822)
T ss_dssp HHHHHHHHHHHHHH-HHTCCEEEEESSHHHHHHHHHHHHTTTCC----------CEEECSC-HHHHHHHHHHHHHS---T
T ss_pred HHHHHHHHHHHHHh-hCCCCEEEEECCHHHHHHHHHHHHHCCCC----------EEEeeCC-chHHHHHHHHhCCC---C
Confidence 45566666666553 23456999999999999999999976643 2222222 23334333333221 4
Q ss_pred ceEEEEeeCcccccccccC-CC-----cceEEEEEcCCC
Q psy1221 652 GALMLSVIGGKLSEGLNFS-DD-----LGRCVVVMCNSN 684 (690)
Q Consensus 652 ~aiLfaV~gG~~sEGIDf~-g~-----~~r~ViivgLPf 684 (690)
+.|+.|+ .-.+.|+|++ |. .+-+||..-+|-
T Consensus 523 g~VtVAT--dmAgRGtDI~lg~~V~~~GglhVInte~Pe 559 (822)
T 3jux_A 523 GMVTIAT--NMAGRGTDIKLGPGVAELGGLCIIGTERHE 559 (822)
T ss_dssp TCEEEEE--TTTTTTCCCCCCTTTTTTTSCEEEESSCCS
T ss_pred CeEEEEc--chhhCCcCccCCcchhhcCCCEEEecCCCC
Confidence 7899998 8999999997 22 245788887774
No 71
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=94.24 E-value=0.11 Score=57.96 Aligned_cols=101 Identities=15% Similarity=0.167 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHhhh-cccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEE--------cCCC-chhHHHHH
Q psy1221 572 DTLKEIAMTITNLCT-IVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFR--------EPKK-TSEVDKVL 641 (690)
Q Consensus 572 ~~~~~l~~~I~~l~~-~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~--------E~~~-~~~~~~~l 641 (690)
.-...+.+.|.+... ..++.+|||.++-...+.+.+.+++.... ...+...+ .... ..++.+++
T Consensus 372 ~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~------~~~~~~~~~g~~~~~~~~~~~~~~R~~~~ 445 (556)
T 4a2p_A 372 PKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPIL------NYIKPGVLMGRGRRDQTTGMTLPSQKGVL 445 (556)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGG------GSCCEEC----------------------
T ss_pred hHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCc------ceeeeeEEEccCCcccccccCHHHHHHHH
Confidence 345666677765543 34678999999999999999999864211 00111111 1111 23778999
Q ss_pred HHhhh-cccCCceEEEEeeCcccccccccCCCcceEEEEEcCCCC
Q psy1221 642 SDYGT-SVEKGGALMLSVIGGKLSEGLNFSDDLGRCVVVMCNSNP 685 (690)
Q Consensus 642 ~~f~~-~~~~~~aiLfaV~gG~~sEGIDf~g~~~r~ViivgLPfp 685 (690)
++|++ . .-.||+|+ ..++||||+++ +.+||...+|..
T Consensus 446 ~~F~~~g---~~~vLvaT--~~~~~GiDip~--v~~VI~~d~p~s 483 (556)
T 4a2p_A 446 DAFKTSK---DNRLLIAT--SVADEGIDIVQ--CNLVVLYEYSGN 483 (556)
T ss_dssp -----------CCEEEEE--C-------------CEEEEETCCSC
T ss_pred HHhcccC---ceEEEEEc--CchhcCCCchh--CCEEEEeCCCCC
Confidence 99998 4 45799888 88999999997 899999999853
No 72
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=94.07 E-value=0.022 Score=62.96 Aligned_cols=72 Identities=17% Similarity=0.293 Sum_probs=49.0
Q ss_pred eHHHHHH-HHHhhhhccCCcccCCceeEEEEeCC------ccchHHHHhHhhhhhcCCc-ccCCc-ccccHHHHHhhhh-
Q psy1221 143 GVERLFS-IIENRNAEQGVKVKTTSTQVYVASAQ------KNLVEPRMQLCHELWGGEK-TQEKP-KLSGLQSFLKGVQ- 212 (690)
Q Consensus 143 ~~~~l~~-~~~~~~~~~~~~~~~~~~~v~v~~~~------~~~~~~~~~l~~~L~~~~i-~~~~~-~~~~Lk~~lk~~~- 212 (690)
|+|||+. +++..+.. ...+..+.+|+|++.+ +...+.+.++++.||..++ +..+. ...++...++.++
T Consensus 316 gieRli~~lie~~~g~--~p~~~ap~qv~Iip~~~~~~~~~~~~~~a~~i~~~Lr~~Gi~v~~D~~~~~~~g~k~~~a~~ 393 (471)
T 3a32_A 316 SIERFLGVYLEHRRGR--MPFTLAPIQFAVIAVKTGGEVDREIEDLASSIAKGLLDKGFRVAVKGSSKTGLSSDVRHIES 393 (471)
T ss_dssp EHHHHHHHHHHHTTTC--CCGGGCSCSEEEEEEECSSTTHHHHHHHHHHHHHHHHHTTCEEEEEEEETTTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCCC--CCCCcCCceEEEEEccCcccccHHHHHHHHHHHHHHHHCCCEEEEecCCCCCHHHHHHHHHH
Confidence 6999994 55654211 1122346789998876 4567788999999999544 44454 4568899998888
Q ss_pred hcCC
Q psy1221 213 ENNP 216 (690)
Q Consensus 213 kl~~ 216 (690)
+.+.
T Consensus 394 ~~gi 397 (471)
T 3a32_A 394 TAKP 397 (471)
T ss_dssp TTCC
T ss_pred hcCC
Confidence 7653
No 73
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=93.95 E-value=0.26 Score=54.51 Aligned_cols=93 Identities=13% Similarity=0.210 Sum_probs=66.9
Q ss_pred HHHHHHHHhhhcccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCch-hHHHHHHHhhhcccCCceE
Q psy1221 576 EIAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKTS-EVDKVLSDYGTSVEKGGAL 654 (690)
Q Consensus 576 ~l~~~I~~l~~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~~-~~~~~l~~f~~~~~~~~ai 654 (690)
.+.+.+.+... .+++.+++|.+....+.+.+.+.+.+ .+..++-++.+. ++++++++|++. +..|
T Consensus 335 ~l~~~l~~~~~-~~~~~~ivf~~~~~~~~l~~~L~~~~----------~~v~~~~g~~~~~~r~~i~~~f~~g---~~~v 400 (510)
T 2oca_A 335 WIAKLAIKLAQ-KDENAFVMFKHVSHGKAIFDLIKNEY----------DKVYYVSGEVDTETRNIMKTLAENG---KGII 400 (510)
T ss_dssp HHHHHHHHHHT-TTCEEEEEESSHHHHHHHHHHHHTTC----------SSEEEESSSTTHHHHHHHHHHHHHC---CSCE
T ss_pred HHHHHHHHHHh-cCCCeEEEEecHHHHHHHHHHHHHcC----------CCeEEEECCCCHHHHHHHHHHHhCC---CCCE
Confidence 34555555443 46778889999888888888877532 134555555543 788999999975 4467
Q ss_pred EEEeeCcccccccccCCCcceEEEEEcCCCC
Q psy1221 655 MLSVIGGKLSEGLNFSDDLGRCVVVMCNSNP 685 (690)
Q Consensus 655 LfaV~gG~~sEGIDf~g~~~r~ViivgLPfp 685 (690)
|+|+. ..+++|||+++ ++.||+.+.|..
T Consensus 401 Lv~T~-~~~~~GiDip~--v~~vi~~~~~~s 428 (510)
T 2oca_A 401 IVASY-GVFSTGISVKN--LHHVVLAHGVKS 428 (510)
T ss_dssp EEEEH-HHHHHSCCCCS--EEEEEESSCCCS
T ss_pred EEEEc-Chhhccccccc--CcEEEEeCCCCC
Confidence 76661 46999999998 899999999853
No 74
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=93.95 E-value=0.66 Score=55.99 Aligned_cols=96 Identities=10% Similarity=0.024 Sum_probs=61.0
Q ss_pred HHHHHhhhcccCcEEEEeccHHHHHHHHHHHHhcCchh---------HHH--------------------HHhcCceEEE
Q psy1221 579 MTITNLCTIVPKGMVCFFPSYDYEAIVYNYMRDNHFIE---------RIA--------------------RIAKKKVVFR 629 (690)
Q Consensus 579 ~~I~~l~~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~---------~~~--------------------~~~~~~~i~~ 629 (690)
..+..+.....+.++||.+|....+.+.+.+...++.. +++ .+......+.
T Consensus 333 ~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~ 412 (1010)
T 2xgj_A 333 KIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIH 412 (1010)
T ss_dssp HHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEE
T ss_pred HHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEE
Confidence 33333333344579999999999999998887543210 000 0001123344
Q ss_pred cCCCc-hhHHHHHHHhhhcccCCceEEEEeeCcccccccccCCCcceEEEEEcC
Q psy1221 630 EPKKT-SEVDKVLSDYGTSVEKGGALMLSVIGGKLSEGLNFSDDLGRCVVVMCN 682 (690)
Q Consensus 630 E~~~~-~~~~~~l~~f~~~~~~~~aiLfaV~gG~~sEGIDf~g~~~r~ViivgL 682 (690)
-.+.. .+++.+++.|++. .-.||+|+ ..+++|||+|+ +.|||.++
T Consensus 413 Hggl~~~eR~~ve~~F~~G---~ikVLVAT--~~la~GIDiP~---~~vVI~~~ 458 (1010)
T 2xgj_A 413 HSGLLPILKEVIEILFQEG---FLKVLFAT--ETFSIGLNMPA---KTVVFTSV 458 (1010)
T ss_dssp STTSCHHHHHHHHHHHHTT---CCSEEEEE--GGGGGSTTCCB---SEEEESCS
T ss_pred CCCCCHHHHHHHHHHHhcC---CCcEEEEe--hHhhccCCCCC---ceEEEeCC
Confidence 44433 3778899999875 56799999 88999999997 34455543
No 75
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=93.86 E-value=0.13 Score=58.97 Aligned_cols=142 Identities=13% Similarity=0.079 Sum_probs=84.8
Q ss_pred HHHHHHHHhCCCceEEEecCCCCCCCCcceeEEEEEEcC-CCc---ceE----eeccchh-hhhhhcCCCCCCCCccchh
Q psy1221 52 LLFHYCQIYGLKDTIVFDLSLARGLDYYTGVIYEAVLKD-QAV---GSV----AGGGRYD-NLVGMFDPKNKTTPCVAAK 122 (690)
Q Consensus 52 ~~~~~l~~~g~~~~i~~d~~~~r~~~YYtG~vFe~~~~~-~~~---~~i----~~GGRYD-~L~~~f~~~~~~~~~~g~~ 122 (690)
.+.+.|+..|++ +.++++. +..|+..+.|++. +. +.. +++ .-++||| .....-|+ +..|++.
T Consensus 446 ~l~~~l~~~g~~--~~~~~~~--~~~ygpki~~~~~-d~lg~~~~~gtiq~D~~l~~~~d~~Y~~~~g~--~~~P~~i-- 516 (645)
T 1nyr_A 446 MLKEAADELGLS--YEEAIGE--AAFYGPKLDVQVK-TAMGKEETLSTAQLDFLLPERFDLTYIGQDGE--HHRPVVI-- 516 (645)
T ss_dssp HHHHHHHHHCCC--CCCEESC--SBTTBCEEEEEEC-CTTSCCEEEEEEEEESSHHHHTTCCEECTTSC--EECCEEE--
T ss_pred HHHHHHHHcCCC--eEecCCC--CceeCCccceehh-hhhCchhhcceEEeecccccccceEEECCCCC--ccCcEEE--
Confidence 344556777876 5556654 4556666666542 21 111 111 1146666 23222221 2345441
Q ss_pred hhhhhhcccccccCcceeeeeHHHHHHHH-HhhhhccCCcccCCceeEEEEeCC-ccchHHHHhHhhhhhcCC-cccCCc
Q psy1221 123 LLHEVQGLLETSCRSCREDIGVERLFSII-ENRNAEQGVKVKTTSTQVYVASAQ-KNLVEPRMQLCHELWGGE-KTQEKP 199 (690)
Q Consensus 123 ~~~~~~~~~~~~~~~~g~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~v~v~~~~-~~~~~~~~~l~~~L~~~~-i~~~~~ 199 (690)
--|+..|+||++.++ +...- ....+..+.+|+|++.+ +.....+.++++.||+.+ .+..+.
T Consensus 517 --------------h~~~~GgieR~i~~liE~~~~--~~P~~lap~qv~vip~~~~~~~~~a~~i~~~Lr~~Gi~v~~D~ 580 (645)
T 1nyr_A 517 --------------HRGVVSTMERFVAFLTEETKG--AFPTWLAPKQVQIIPVNVDLHYDYARQLQDELKSQGVRVSIDD 580 (645)
T ss_dssp --------------EEEEEEEHHHHHHHHHHHHTT--CCCTTTCSSCEEEEESSHHHHHHHHHHHHHHHHTTTCCEEECC
T ss_pred --------------EeccCCcHHHHHHHHHHHhcC--CCCCCCCCceEEEEEcccHHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 005777899999766 44321 11223356899999998 777889999999999954 444455
Q ss_pred ccccHHHHHhhhhhcCCCC
Q psy1221 200 KLSGLQSFLKGVQENNPNL 218 (690)
Q Consensus 200 ~~~~Lk~~lk~~~kl~~~~ 218 (690)
...++...++.+++.+...
T Consensus 581 ~~~~~g~k~~~a~~~g~p~ 599 (645)
T 1nyr_A 581 RNEKMGYKIREAQMQKIPY 599 (645)
T ss_dssp SSCCHHHHHHHHHHHTCSE
T ss_pred CCCCHHHHHHHHHhcCCCE
Confidence 5668999999998876533
No 76
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=93.62 E-value=0.29 Score=56.36 Aligned_cols=91 Identities=11% Similarity=0.149 Sum_probs=66.8
Q ss_pred HHHHHHHHHhhhcccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCc-hhHHHHHHHhhhcccCCce
Q psy1221 575 KEIAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKT-SEVDKVLSDYGTSVEKGGA 653 (690)
Q Consensus 575 ~~l~~~I~~l~~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~-~~~~~~l~~f~~~~~~~~a 653 (690)
..+...|.+.. ..++.++||++|....+.+.+.+++.++. ..++.+... .++.+++++|+.. .-.
T Consensus 432 ~~Ll~~l~~~~-~~~~~vlVf~~t~~~ae~L~~~L~~~gi~----------~~~lh~~~~~~~R~~~l~~f~~g---~~~ 497 (661)
T 2d7d_A 432 DDLIGEIQARI-ERNERVLVTTLTKKMSEDLTDYLKEIGIK----------VNYLHSEIKTLERIEIIRDLRLG---KYD 497 (661)
T ss_dssp HHHHHHHHHHH-TTTCEEEEECSSHHHHHHHHHHHHHTTCC----------EEEECTTCCHHHHHHHHHHHHHT---SCS
T ss_pred HHHHHHHHHHH-hcCCeEEEEECCHHHHHHHHHHHHhcCCC----------eEEEeCCCCHHHHHHHHHHHhcC---CeE
Confidence 33444444433 23568999999999999999999865432 333444333 4788999999875 457
Q ss_pred EEEEeeCcccccccccCCCcceEEEEEcCC
Q psy1221 654 LMLSVIGGKLSEGLNFSDDLGRCVVVMCNS 683 (690)
Q Consensus 654 iLfaV~gG~~sEGIDf~g~~~r~ViivgLP 683 (690)
||+|+ +.+++|+|+++ +++||+...+
T Consensus 498 VLVaT--~~l~~GlDip~--v~lVi~~d~d 523 (661)
T 2d7d_A 498 VLVGI--NLLREGLDIPE--VSLVAILDAD 523 (661)
T ss_dssp EEEES--CCCSTTCCCTT--EEEEEETTTT
T ss_pred EEEec--chhhCCcccCC--CCEEEEeCcc
Confidence 88887 78999999996 8999999874
No 77
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=93.43 E-value=0.12 Score=59.67 Aligned_cols=100 Identities=9% Similarity=0.155 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHhhhc-ccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEc--------CCC-chhHHHHHH
Q psy1221 573 TLKEIAMTITNLCTI-VPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFRE--------PKK-TSEVDKVLS 642 (690)
Q Consensus 573 ~~~~l~~~I~~l~~~-~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E--------~~~-~~~~~~~l~ 642 (690)
-...+.+.|.+.... .++.+|||.++....+.+++.++..+.. ...+...+- ... ..++.++++
T Consensus 381 k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~------~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~ 454 (696)
T 2ykg_A 381 KLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKL------SFLKPGILTGRGKTNQNTGMTLPAQKCILD 454 (696)
T ss_dssp HHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTC------CSCCEEC-----------------------
T ss_pred HHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCc------cccceeEEEccCCCccccCCCHHHHHHHHH
Confidence 455566666655433 3467999999999999999999876421 001122221 121 236788999
Q ss_pred Hhhh-cccCCceEEEEeeCcccccccccCCCcceEEEEEcCCCC
Q psy1221 643 DYGT-SVEKGGALMLSVIGGKLSEGLNFSDDLGRCVVVMCNSNP 685 (690)
Q Consensus 643 ~f~~-~~~~~~aiLfaV~gG~~sEGIDf~g~~~r~ViivgLPfp 685 (690)
+|++ . .-.||+|+ ..+.||||+++ ++.||..++|..
T Consensus 455 ~F~~~g---~~~vLVaT--~v~~~GiDip~--v~~VI~~d~p~s 491 (696)
T 2ykg_A 455 AFKASG---DHNILIAT--SVADEGIDIAQ--CNLVILYEYVGN 491 (696)
T ss_dssp ---------CCSCSEEE--ESSCCC---CC--CSEEEEESCC--
T ss_pred HHHhcC---CccEEEEe--chhhcCCcCcc--CCEEEEeCCCCC
Confidence 9987 4 45788888 78999999997 899999999854
No 78
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=93.35 E-value=0.14 Score=56.06 Aligned_cols=73 Identities=16% Similarity=0.113 Sum_probs=56.9
Q ss_pred ccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCchhHHHHHHHhhhcccCCceEEEEeeCccccccc
Q psy1221 588 VPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKTSEVDKVLSDYGTSVEKGGALMLSVIGGKLSEGL 667 (690)
Q Consensus 588 ~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~~~~~~~l~~f~~~~~~~~aiLfaV~gG~~sEGI 667 (690)
.++.+|||++|....+.+++.+++.++. ...+-+ ...++.+++|++. +..||+|+ ..+.+||
T Consensus 187 ~~~~~lVF~~s~~~a~~l~~~L~~~g~~----------~~~lh~---~~~~~~~~~f~~g---~~~vLVaT--~v~~~Gi 248 (451)
T 2jlq_A 187 YQGKTVWFVPSIKAGNDIANCLRKSGKR----------VIQLSR---KTFDTEYPKTKLT---DWDFVVTT--DISEMGA 248 (451)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCC----------EEEECT---TTHHHHGGGGGSS---CCSEEEEC--GGGGSSC
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHcCCe----------EEECCH---HHHHHHHHhhccC---CceEEEEC--CHHHhCc
Confidence 4678999999999999999999865432 223332 2346788999875 67899888 8899999
Q ss_pred ccCCCcceEEEEEc
Q psy1221 668 NFSDDLGRCVVVMC 681 (690)
Q Consensus 668 Df~g~~~r~Viivg 681 (690)
|+++ +.||-.|
T Consensus 249 Dip~---~~VI~~~ 259 (451)
T 2jlq_A 249 NFRA---GRVIDPR 259 (451)
T ss_dssp CCCC---SEEEECC
T ss_pred CCCC---CEEEECC
Confidence 9998 8888666
No 79
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=93.02 E-value=1.1 Score=57.14 Aligned_cols=159 Identities=13% Similarity=0.101 Sum_probs=86.3
Q ss_pred ceEEEeCCCCCchhhHHHHhhccCCCCCCceEEEEeCCCccCCCeeEEEeecCCCCcceeeeccccCChHHHHHHHHHHH
Q psy1221 503 RSIIVAGGTMEPVSEFKDQLFGSLGVPESRIHHFSCGHVIPKENILPLILCSGPTNRKFDLTFENRTKGDTLKEIAMTIT 582 (690)
Q Consensus 503 ~svil~SgTLsP~~~f~~~l~~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~I~ 582 (690)
..+|++|||+...+.+.++| |........ ..+-+.+-.+...+....... +..+. ..+...+...+.
T Consensus 1084 ~riI~lSATl~N~~dla~WL----~~~~~~~~~--~~~~~RPvpL~~~i~~~~~~~------~~~~~-~~~~~~~~~~i~ 1150 (1724)
T 4f92_B 1084 IRIVALSSSLSNAKDVAHWL----GCSATSTFN--FHPNVRPVPLELHIQGFNISH------TQTRL-LSMAKPVYHAIT 1150 (1724)
T ss_dssp CEEEEEESCBTTHHHHHHHH----TCCSTTEEE--CCGGGCSSCEEEEEEEECCCS------HHHHH-HTTHHHHHHHHH
T ss_pred ceEEEEeCCCCCHHHHHHHh----CCCCCCeEE--eCCCCCCCCeEEEEEeccCCC------chhhh-hhhcchHHHHHH
Confidence 46899999999888998888 443333222 222222222222222111000 00100 112222333333
Q ss_pred HhhhcccCcEEEEeccHHHHHHHHHHHHhcCc------------h-h-----------HHHHHhcCceEEEcCCCc-hhH
Q psy1221 583 NLCTIVPKGMVCFFPSYDYEAIVYNYMRDNHF------------I-E-----------RIARIAKKKVVFREPKKT-SEV 637 (690)
Q Consensus 583 ~l~~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~------------~-~-----------~~~~~~~~~~i~~E~~~~-~~~ 637 (690)
+. ...+.++||.+|...-+.+...+..... . . .+.+.-....-+.-.+.. .++
T Consensus 1151 ~~--~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R 1228 (1724)
T 4f92_B 1151 KH--SPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMER 1228 (1724)
T ss_dssp HH--CSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHH
T ss_pred Hh--cCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHH
Confidence 22 2345799999999888777665532100 0 0 000111122333444433 377
Q ss_pred HHHHHHhhhcccCCceEEEEeeCcccccccccCCCcceEEEEEcCCC
Q psy1221 638 DKVLSDYGTSVEKGGALMLSVIGGKLSEGLNFSDDLGRCVVVMCNSN 684 (690)
Q Consensus 638 ~~~l~~f~~~~~~~~aiLfaV~gG~~sEGIDf~g~~~r~ViivgLPf 684 (690)
..+.+.|++. .=.||+|+ ..++.|||+| ++.|||.|.++
T Consensus 1229 ~~VE~lF~~G---~i~VLvaT--~tlA~GVnlP---a~~VVI~~~~~ 1267 (1724)
T 4f92_B 1229 RLVEQLFSSG---AIQVVVAS--RSLCWGMNVA---AHLVIIMDTQY 1267 (1724)
T ss_dssp HHHHHHHHHT---SBCEEEEE--GGGSSSCCCC---BSEEEEECSEE
T ss_pred HHHHHHHHCC---CCeEEEEC--hHHHcCCCCC---ccEEEEecCcc
Confidence 8888889886 56788888 7899999999 47888887653
No 80
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=92.92 E-value=0.21 Score=59.84 Aligned_cols=99 Identities=15% Similarity=0.173 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhhh-cccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEE--------cCCC-chhHHHHHHH
Q psy1221 574 LKEIAMTITNLCT-IVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFR--------EPKK-TSEVDKVLSD 643 (690)
Q Consensus 574 ~~~l~~~I~~l~~-~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~--------E~~~-~~~~~~~l~~ 643 (690)
...+.+.|.+... ..++.+|||.++-..++.+.+.+.+.... ...+...+ .... ..++.+++++
T Consensus 615 ~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l------~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~ 688 (936)
T 4a2w_A 615 LEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPIL------NYIKPGVLMGRGRRDQTTGMTLPSQKGVLDA 688 (936)
T ss_dssp HHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTT------SSCCCEEC-----------------------
T ss_pred HHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccc------cccceeEEecCCCcccCCCCCHHHHHHHHHH
Confidence 4445556655443 33578999999999999999999865111 00011111 1111 2377899999
Q ss_pred hhh-cccCCceEEEEeeCcccccccccCCCcceEEEEEcCCCC
Q psy1221 644 YGT-SVEKGGALMLSVIGGKLSEGLNFSDDLGRCVVVMCNSNP 685 (690)
Q Consensus 644 f~~-~~~~~~aiLfaV~gG~~sEGIDf~g~~~r~ViivgLPfp 685 (690)
|++ . .-.||+|+ ..++||||+++ +..||...+|.-
T Consensus 689 Fr~~g---~~~VLVaT--~~~~eGIDlp~--v~~VI~yD~p~s 724 (936)
T 4a2w_A 689 FKTSK---DNRLLIAT--SVADEGIDIVQ--CNLVVLYEYSGN 724 (936)
T ss_dssp --------CCSEEEEE--CC------CCC--CSEEEEESCCSC
T ss_pred hhccC---CeeEEEEe--CchhcCCcchh--CCEEEEeCCCCC
Confidence 987 4 45689888 88999999997 999999999854
No 81
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=92.88 E-value=0.25 Score=58.13 Aligned_cols=102 Identities=15% Similarity=0.179 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhhh-cccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHh-----cCceEEEcCCC-chhHHHHHHHhhh
Q psy1221 574 LKEIAMTITNLCT-IVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIA-----KKKVVFREPKK-TSEVDKVLSDYGT 646 (690)
Q Consensus 574 ~~~l~~~I~~l~~-~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~-----~~~~i~~E~~~-~~~~~~~l~~f~~ 646 (690)
...+.+.|.+... ..++.+|||.++-..++.+.+.+++.... ..+. ........... ..++.+++++|++
T Consensus 615 ~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~---~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~ 691 (797)
T 4a2q_A 615 LEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPIL---NYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKT 691 (797)
T ss_dssp HHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTT---CSCCCEEC--------------------------
T ss_pred HHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCccc---ccccceEEEecCCcccCCCCCHHHHHHHHHHhhc
Confidence 3445555555433 34578999999999999999999864210 0000 00000111111 2377899999998
Q ss_pred -cccCCceEEEEeeCcccccccccCCCcceEEEEEcCCCC
Q psy1221 647 -SVEKGGALMLSVIGGKLSEGLNFSDDLGRCVVVMCNSNP 685 (690)
Q Consensus 647 -~~~~~~aiLfaV~gG~~sEGIDf~g~~~r~ViivgLPfp 685 (690)
. .-.||+|+ ..++||||+++ +++||...+|.-
T Consensus 692 ~g---~~~vLVaT--~~~~~GIDlp~--v~~VI~yd~p~s 724 (797)
T 4a2q_A 692 SK---DNRLLIAT--SVADEGIDIVQ--CNLVVLYEYSGN 724 (797)
T ss_dssp -----CCSEEEEE--CC-------CC--CSEEEEESCCSC
T ss_pred cC---CceEEEEc--CchhcCCCchh--CCEEEEeCCCCC
Confidence 4 45699888 88999999997 999999999853
No 82
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=92.84 E-value=0.014 Score=60.36 Aligned_cols=66 Identities=21% Similarity=0.193 Sum_probs=45.5
Q ss_pred ecCCCCCCCCcce-eEEEEEEcCC---Cc------ceEee--ccchhhhhhhcCCCCCCCCccchhhhhhhhcccccccC
Q psy1221 69 DLSLARGLDYYTG-VIYEAVLKDQ---AV------GSVAG--GGRYDNLVGMFDPKNKTTPCVAAKLLHEVQGLLETSCR 136 (690)
Q Consensus 69 d~~~~r~~~YYtG-~vFe~~~~~~---~~------~~i~~--GGRYD~L~~~f~~~~~~~~~~g~~~~~~~~~~~~~~~~ 136 (690)
|+.+++++|||.+ -+||+..... .. -..++ +++|+.++..++. |...|+
T Consensus 198 d~~~~~~~Dl~~~~g~~Ei~~g~~r~~d~~~l~~~~~~~g~~~~~~~~~l~~l~~-G~p~P~------------------ 258 (294)
T 1nnh_A 198 VDGFWRNYDLILPYGYGEVASGGEREWEYEKIVAKIRKAGLNEDSFRPYLEIAKA-GKLKPS------------------ 258 (294)
T ss_dssp ETTEECEEEEEETTTTEEEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHHHHHT-TCCCCE------------------
T ss_pred CCCeEEEEEEEECCCcEEEecCeeecCCHHHHHHHHHHcCCCccCHHHHHHHHhc-CCCCCc------------------
Confidence 7888899999987 7788765420 00 01222 7899999999862 133355
Q ss_pred cceeeeeHHHHHHHHHhh
Q psy1221 137 SCREDIGVERLFSIIENR 154 (690)
Q Consensus 137 ~~g~~~~~~~l~~~~~~~ 154 (690)
+||++|+|||+.++...
T Consensus 259 -~G~glGieRL~mll~g~ 275 (294)
T 1nnh_A 259 -AGAGIGVERLVRFIVGA 275 (294)
T ss_dssp -EEEEEEHHHHHHHHHTC
T ss_pred -eEEEEcHHHHHHHHhCC
Confidence 45999999999988753
No 83
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=92.53 E-value=0.66 Score=51.00 Aligned_cols=98 Identities=16% Similarity=0.152 Sum_probs=67.4
Q ss_pred HHHHHHHHHHhhhcccCcEEEEeccHHHHHHHHHHHHhc-CchhHHHHHhcCceEEEcCCCc-hhHHHHHHHhhhcccCC
Q psy1221 574 LKEIAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYMRDN-HFIERIARIAKKKVVFREPKKT-SEVDKVLSDYGTSVEKG 651 (690)
Q Consensus 574 ~~~l~~~I~~l~~~~~gg~lVfF~Sy~~l~~v~~~~~~~-~~~~~~~~~~~~~~i~~E~~~~-~~~~~~l~~f~~~~~~~ 651 (690)
...+.+.|.+... .+..++||..+-..++.+.+.+... + .+..++.+..+ .++++++++|++..+ .
T Consensus 327 ~~~l~~~l~~~~~-~~~k~lvF~~~~~~~~~l~~~l~~~~~----------~~~~~~~g~~~~~~R~~~~~~F~~~~~-~ 394 (500)
T 1z63_A 327 MIRTMEIIEEALD-EGDKIAIFTQFVDMGKIIRNIIEKELN----------TEVPFLYGELSKKERDDIISKFQNNPS-V 394 (500)
T ss_dssp HHHHHHHHHHHHT-TTCCEEEECSCHHHHHHHHHHHHHHHT----------CCCCEEETTSCHHHHHHHHHHHHHCTT-C
T ss_pred HHHHHHHHHHHHc-cCCcEEEEEehHHHHHHHHHHHHHhhC----------CCeEEEECCCCHHHHHHHHHHhcCCCC-C
Confidence 3445555555542 4568899999989988888888742 2 12344455544 489999999998511 1
Q ss_pred ceEEEEeeCcccccccccCCCcceEEEEEcCCCCCC
Q psy1221 652 GALMLSVIGGKLSEGLNFSDDLGRCVVVMCNSNPLR 687 (690)
Q Consensus 652 ~aiLfaV~gG~~sEGIDf~g~~~r~ViivgLPfp~p 687 (690)
..+|+++ ...+||+|+++ +..||+..+|+-+.
T Consensus 395 ~vil~st--~~~~~Glnl~~--~~~vi~~d~~~~~~ 426 (500)
T 1z63_A 395 KFIVLSV--KAGGFGINLTS--ANRVIHFDRWWNPA 426 (500)
T ss_dssp CCCEEEC--CCC-CCCCCTT--CSEEEESSCCSCC-
T ss_pred CEEEEec--ccccCCCchhh--CCEEEEeCCCCCcc
Confidence 2477777 78999999985 89999999887543
No 84
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=92.12 E-value=0.094 Score=57.60 Aligned_cols=73 Identities=15% Similarity=0.109 Sum_probs=53.2
Q ss_pred ccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCchhHHHHHHHhhhcccCCceEEEEeeCccccccc
Q psy1221 588 VPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKTSEVDKVLSDYGTSVEKGGALMLSVIGGKLSEGL 667 (690)
Q Consensus 588 ~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~~~~~~~l~~f~~~~~~~~aiLfaV~gG~~sEGI 667 (690)
.++.+|||++|....+.+++.++..++ +...+.+. ++.+.+++|++. ...||+|+ ..+.+||
T Consensus 189 ~~~~~LVF~~s~~~~~~l~~~L~~~g~----------~v~~lh~~---~R~~~~~~f~~g---~~~iLVaT--~v~~~Gi 250 (459)
T 2z83_A 189 YAGKTVWFVASVKMGNEIAMCLQRAGK----------KVIQLNRK---SYDTEYPKCKNG---DWDFVITT--DISEMGA 250 (459)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTC----------CEEEESTT---CCCCCGGGSSSC---CCSEEEES--SCC---C
T ss_pred cCCCEEEEeCChHHHHHHHHHHHhcCC----------cEEecCHH---HHHHHHhhccCC---CceEEEEC--ChHHhCe
Confidence 378999999999999999999986543 22333332 345678888765 56899888 8899999
Q ss_pred ccCCCcceEEEEEc
Q psy1221 668 NFSDDLGRCVVVMC 681 (690)
Q Consensus 668 Df~g~~~r~Viivg 681 (690)
|+++ +.||-.|
T Consensus 251 Dip~---~~VI~~G 261 (459)
T 2z83_A 251 NFGA---SRVIDCR 261 (459)
T ss_dssp CCSC---SEEEECC
T ss_pred ecCC---CEEEECC
Confidence 9997 8888866
No 85
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=92.02 E-value=0.18 Score=55.95 Aligned_cols=83 Identities=13% Similarity=0.049 Sum_probs=59.9
Q ss_pred cCcceeeeeHHHHHHHHHhhhh----------ccC--CcccCCceeEEEEeCCc---cchHHHHhHhhhhhcCC--cccC
Q psy1221 135 CRSCREDIGVERLFSIIENRNA----------EQG--VKVKTTSTQVYVASAQK---NLVEPRMQLCHELWGGE--KTQE 197 (690)
Q Consensus 135 ~~~~g~~~~~~~l~~~~~~~~~----------~~~--~~~~~~~~~v~v~~~~~---~~~~~~~~l~~~L~~~~--i~~~ 197 (690)
++.+|+++|+||++.++..... ..+ ...+..+.+|+|++.++ .....+..|++.|+..+ .+..
T Consensus 355 p~vig~s~GieRli~alle~~~~~~~~~~gd~~~gl~~p~~laP~~v~Vip~~~~~~~~~~~a~~l~~~Lr~~G~i~v~~ 434 (505)
T 1ati_A 355 PYVIEPSAGVDRGVLALLAEAFTREELPNGEERIVLKLKPQLAPIKVAVIPLVKNRPEITEYAKRLKARLLALGLGRVLY 434 (505)
T ss_dssp CEEEEEEEEHHHHHHHHHHHHEEEEECTTSCEEEEECCCGGGCSCSEEEEESCSSCHHHHHHHHHHHHHHHTTCSSCEEE
T ss_pred ceEEEEeeEHHHHHHHHHHHHhhhcccccccccccccCCcccCCceEEEEEcCCccHHHHHHHHHHHHHHhccCCEEEEE
Confidence 4589999999999987774321 111 11123568999999987 56778899999999955 4444
Q ss_pred CcccccHHHHHhhhhhcCCCC
Q psy1221 198 KPKLSGLQSFLKGVQENNPNL 218 (690)
Q Consensus 198 ~~~~~~Lk~~lk~~~kl~~~~ 218 (690)
+.. .++...++.+++.+...
T Consensus 435 D~~-~sig~k~~~ad~~g~p~ 454 (505)
T 1ati_A 435 EDT-GNIGKAYRRHDEVGTPF 454 (505)
T ss_dssp CCC-SCHHHHHHHHHHTTCSE
T ss_pred CCC-CCHHHHHHHHHHCCCCE
Confidence 444 78999999999887544
No 86
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=91.92 E-value=0.21 Score=60.75 Aligned_cols=82 Identities=11% Similarity=0.203 Sum_probs=56.3
Q ss_pred HhhhcccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCchhHHHHHHHhhhcccCCceEEEEee--C
Q psy1221 583 NLCTIVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKTSEVDKVLSDYGTSVEKGGALMLSVI--G 660 (690)
Q Consensus 583 ~l~~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~~~~~~~l~~f~~~~~~~~aiLfaV~--g 660 (690)
++++..++++|||+++....+.+++.++.. + +...+.+. ++..+++|++. +..||+|++ .
T Consensus 269 ~ll~~~~~~~LVF~~t~~~a~~l~~~L~~~-~----------~v~~lhg~----~~~~l~~F~~G---~~~VLVaTas~T 330 (1054)
T 1gku_B 269 SILEKLGTGGIIYARTGEEAEEIYESLKNK-F----------RIGIVTAT----KKGDYEKFVEG---EIDHLIGTAHYY 330 (1054)
T ss_dssp HHHTTSCSCEEEEESSHHHHHHHHHTTTTS-S----------CEEECTTS----SSHHHHHHHHT---SCSEEEEECC--
T ss_pred HHHhhcCCCEEEEEcCHHHHHHHHHHHhhc-c----------CeeEEecc----HHHHHHHHHcC---CCcEEEEecCCC
Confidence 334444789999999999999999888743 1 22333332 25789999986 568998832 3
Q ss_pred cccccccccCCCcceEEEEEcCC
Q psy1221 661 GKLSEGLNFSDDLGRCVVVMCNS 683 (690)
Q Consensus 661 G~~sEGIDf~g~~~r~ViivgLP 683 (690)
..+++|||+++- +++||..|+|
T Consensus 331 dv~~rGIDip~V-I~~VI~~~~P 352 (1054)
T 1gku_B 331 GTLVRGLDLPER-IRFAVFVGCP 352 (1054)
T ss_dssp ----CCSCCTTT-CCEEEEESCC
T ss_pred CeeEeccccCCc-ccEEEEeCCC
Confidence 789999999972 2789999999
No 87
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=91.85 E-value=0.23 Score=56.70 Aligned_cols=75 Identities=16% Similarity=0.138 Sum_probs=59.4
Q ss_pred ccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCchhHHHHHHHhhhcccCCceEEEEeeCccccccc
Q psy1221 588 VPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKTSEVDKVLSDYGTSVEKGGALMLSVIGGKLSEGL 667 (690)
Q Consensus 588 ~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~~~~~~~l~~f~~~~~~~~aiLfaV~gG~~sEGI 667 (690)
.++.+|||++|....+.+++.+++.+. +...+-+ .++.+.+++|++. +-.||+|+ ..+++||
T Consensus 354 ~~~~~LVF~~s~~~a~~l~~~L~~~g~----------~v~~lhg---~~R~~~l~~F~~g---~~~VLVaT--dv~~rGi 415 (618)
T 2whx_A 354 YQGKTVWFVPSIKAGNDIANCLRKSGK----------RVIQLSR---KTFDTEYPKTKLT---DWDFVVTT--DISEMGA 415 (618)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHTTC----------CEEEECT---TTHHHHTTHHHHS---CCSEEEEC--GGGGTTC
T ss_pred CCCCEEEEECChhHHHHHHHHHHHcCC----------cEEEECh---HHHHHHHHhhcCC---CcEEEEEC--cHHHcCc
Confidence 378899999999999999999986542 2333332 3678899999886 56899988 8899999
Q ss_pred ccCCCcceEEEEEcCC
Q psy1221 668 NFSDDLGRCVVVMCNS 683 (690)
Q Consensus 668 Df~g~~~r~ViivgLP 683 (690)
|++ ++.||..|++
T Consensus 416 Di~---v~~VId~g~~ 428 (618)
T 2whx_A 416 NFR---AGRVIDPRRC 428 (618)
T ss_dssp CCC---CSEEEECCEE
T ss_pred ccC---ceEEEECcce
Confidence 994 7888888774
No 88
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=91.67 E-value=0.4 Score=52.08 Aligned_cols=66 Identities=15% Similarity=0.165 Sum_probs=52.1
Q ss_pred ccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCchhHHHHHHHhhhcccCCceEEEEeeCccccccc
Q psy1221 588 VPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKTSEVDKVLSDYGTSVEKGGALMLSVIGGKLSEGL 667 (690)
Q Consensus 588 ~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~~~~~~~l~~f~~~~~~~~aiLfaV~gG~~sEGI 667 (690)
.++.++||++|....+.+++.+++.+. +...+-++ ++++++++|++. +-.||+|+ ..+.+||
T Consensus 170 ~~~~~lVF~~~~~~~~~l~~~L~~~~~----------~v~~lhg~---~r~~~~~~f~~g---~~~vLVaT--~v~e~Gi 231 (431)
T 2v6i_A 170 FDGRTVWFVHSIKQGAEIGTCLQKAGK----------KVLYLNRK---TFESEYPKCKSE---KWDFVITT--DISEMGA 231 (431)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHTTC----------CEEEESTT---THHHHTTHHHHS---CCSEEEEC--GGGGTSC
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHcCC----------eEEEeCCc---cHHHHHHhhcCC---CCeEEEEC--chHHcCc
Confidence 478899999999999999999986432 23334332 567899999886 67899888 8899999
Q ss_pred ccCC
Q psy1221 668 NFSD 671 (690)
Q Consensus 668 Df~g 671 (690)
|+|.
T Consensus 232 Dip~ 235 (431)
T 2v6i_A 232 NFKA 235 (431)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 9983
No 89
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=91.63 E-value=0.2 Score=54.77 Aligned_cols=76 Identities=16% Similarity=0.204 Sum_probs=57.8
Q ss_pred ccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCchhHHHHHHHhhhcccCCceEEEEeeCccccccc
Q psy1221 588 VPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKTSEVDKVLSDYGTSVEKGGALMLSVIGGKLSEGL 667 (690)
Q Consensus 588 ~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~~~~~~~l~~f~~~~~~~~aiLfaV~gG~~sEGI 667 (690)
.++.+|||.++-..++.+.+.+.... +--.....++++++++|++. +..||+|+ ..+.|||
T Consensus 348 ~~~k~lvF~~~~~~~~~l~~~l~~~~--------------~~g~~~~~~R~~~~~~F~~g---~~~vLv~T--~~~~~Gl 408 (472)
T 2fwr_A 348 RKDKIIIFTRHNELVYRISKVFLIPA--------------ITHRTSREEREEILEGFRTG---RFRAIVSS--QVLDEGI 408 (472)
T ss_dssp SSSCBCCBCSCHHHHHHHHHHTTCCB--------------CCSSSCSHHHHTHHHHHHHS---SCSBCBCS--SCCCSSS
T ss_pred CCCcEEEEECCHHHHHHHHHHhCcce--------------eeCCCCHHHHHHHHHHHhCC---CCCEEEEc--CchhcCc
Confidence 46789999999999998887765211 11112234788999999885 56788777 8899999
Q ss_pred ccCCCcceEEEEEcCCC
Q psy1221 668 NFSDDLGRCVVVMCNSN 684 (690)
Q Consensus 668 Df~g~~~r~ViivgLPf 684 (690)
|+++ +..||+...|.
T Consensus 409 dlp~--~~~Vi~~~~~~ 423 (472)
T 2fwr_A 409 DVPD--ANVGVIMSGSG 423 (472)
T ss_dssp CSCC--BSEEEEECCSS
T ss_pred cccc--CcEEEEECCCC
Confidence 9986 78999999884
No 90
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=91.53 E-value=0.13 Score=60.29 Aligned_cols=93 Identities=13% Similarity=0.265 Sum_probs=58.2
Q ss_pred HHHHHHHHhhhcccCcEEEEeccHH--------HHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCc-hhHHHHHHHhhh
Q psy1221 576 EIAMTITNLCTIVPKGMVCFFPSYD--------YEAIVYNYMRDNHFIERIARIAKKKVVFREPKKT-SEVDKVLSDYGT 646 (690)
Q Consensus 576 ~l~~~I~~l~~~~~gg~lVfF~Sy~--------~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~-~~~~~~l~~f~~ 646 (690)
.+.+.|.+.+ ..++.++||+|+-. ..+.+++.+++..+ ...+..++-++.+ .++++++++|++
T Consensus 566 ~l~~~i~~~l-~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~-------~~~~v~~lHG~m~~~eR~~v~~~F~~ 637 (780)
T 1gm5_A 566 EVYEFVRQEV-MRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVF-------PEFKLGLMHGRLSQEEKDRVMLEFAE 637 (780)
T ss_dssp HHHHHHHHHT-TTSCCBCCBCCCC--------CHHHHHHHSGGGSCC----------CBCCCCSSSCCSCSHHHHHHHTT
T ss_pred HHHHHHHHHH-hcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhc-------CCCcEEEEeCCCCHHHHHHHHHHHHC
Confidence 3444444433 23566889998543 34555555553000 0112233333332 377899999997
Q ss_pred cccCCceEEEEeeCcccccccccCCCcceEEEEEcCC
Q psy1221 647 SVEKGGALMLSVIGGKLSEGLNFSDDLGRCVVVMCNS 683 (690)
Q Consensus 647 ~~~~~~aiLfaV~gG~~sEGIDf~g~~~r~ViivgLP 683 (690)
. +-.||+|+ ..+++|||+|+ +++||+.+.|
T Consensus 638 G---~~~ILVaT--~vie~GIDiP~--v~~VIi~d~~ 667 (780)
T 1gm5_A 638 G---RYDILVST--TVIEVGIDVPR--ANVMVIENPE 667 (780)
T ss_dssp T---SSSBCCCS--SCCCSCSCCTT--CCEEEBCSCS
T ss_pred C---CCeEEEEC--CCCCccccCCC--CCEEEEeCCC
Confidence 5 56888888 88999999998 7889998877
No 91
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=90.92 E-value=0.36 Score=55.58 Aligned_cols=75 Identities=13% Similarity=0.125 Sum_probs=58.9
Q ss_pred ccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCchhHHHHHHHhhhcccCCceEEEEeeCccccccc
Q psy1221 588 VPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKTSEVDKVLSDYGTSVEKGGALMLSVIGGKLSEGL 667 (690)
Q Consensus 588 ~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~~~~~~~l~~f~~~~~~~~aiLfaV~gG~~sEGI 667 (690)
.++.++||++|....+.+++.|++.++ +...+-+ .++++++++|++. +-.||+|+ ..+.+||
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~g~----------~v~~lHg---~eR~~v~~~F~~g---~~~VLVaT--dv~e~GI 470 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRAGK----------RVIQLNR---KSYDTEYPKCKNG---DWDFVITT--DISEMGA 470 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTC----------CEEEECS---SSHHHHGGGGGTC---CCSEEEEC--GGGGTTC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCC----------eEEEeCh---HHHHHHHHHHHCC---CceEEEEC--chhhcce
Confidence 478899999999999999999986432 2333433 3678899999875 56899888 8899999
Q ss_pred ccCCCcceEEEEEcCC
Q psy1221 668 NFSDDLGRCVVVMCNS 683 (690)
Q Consensus 668 Df~g~~~r~ViivgLP 683 (690)
|++ ++.||..|.+
T Consensus 471 Dip---v~~VI~~g~~ 483 (673)
T 2wv9_A 471 NFG---ASRVIDCRKS 483 (673)
T ss_dssp CCC---CSEEEECCEE
T ss_pred eeC---CcEEEECCCc
Confidence 998 6778876643
No 92
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=90.78 E-value=0.54 Score=56.53 Aligned_cols=93 Identities=13% Similarity=0.098 Sum_probs=68.1
Q ss_pred HHHHHHHHHhhhcccCcEEEEeccHHHHHHHHHHHHhc-CchhHHHHHhcCceEEEcCCCc-hhHHHHHHHhhhcccCCc
Q psy1221 575 KEIAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYMRDN-HFIERIARIAKKKVVFREPKKT-SEVDKVLSDYGTSVEKGG 652 (690)
Q Consensus 575 ~~l~~~I~~l~~~~~gg~lVfF~Sy~~l~~v~~~~~~~-~~~~~~~~~~~~~~i~~E~~~~-~~~~~~l~~f~~~~~~~~ 652 (690)
..+.+.+.+ ..++.++||+.+-...+.+.+.+++. ++ +...+-+..+ .++++++++|+..- +.-
T Consensus 492 ~~L~~ll~~---~~~~k~iVF~~~~~~~~~l~~~L~~~~g~----------~~~~lhG~~~~~~R~~~l~~F~~g~-~~~ 557 (968)
T 3dmq_A 492 EWLMGYLTS---HRSQKVLVICAKAATALQLEQVLREREGI----------RAAVFHEGMSIIERDRAAAWFAEED-TGA 557 (968)
T ss_dssp HHHHHHHHH---TSSSCCCEECSSTHHHHHHHHHHHTTTCC----------CEEEECTTSCTTHHHHHHHHHHSTT-SSC
T ss_pred HHHHHHHHh---CCCCCEEEEeCcHHHHHHHHHHHHHHcCC----------cEEEEeCCCCHHHHHHHHHHHhCCC-Ccc
Confidence 334444433 45678999999999999999888842 32 3455555544 37999999999851 015
Q ss_pred eEEEEeeCcccccccccCCCcceEEEEEcCCCC
Q psy1221 653 ALMLSVIGGKLSEGLNFSDDLGRCVVVMCNSNP 685 (690)
Q Consensus 653 aiLfaV~gG~~sEGIDf~g~~~r~ViivgLPfp 685 (690)
.||+|+ ..+++|||+++ +..||+..+|+.
T Consensus 558 ~vLvaT--~v~~~GlDl~~--~~~VI~~d~p~~ 586 (968)
T 3dmq_A 558 QVLLCS--EIGSEGRNFQF--ASHMVMFDLPFN 586 (968)
T ss_dssp EEEECS--CCTTCSSCCTT--CCEEECSSCCSS
T ss_pred cEEEec--chhhcCCCccc--CcEEEEecCCCC
Confidence 677776 89999999997 889999999853
No 93
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=90.75 E-value=1.1 Score=51.31 Aligned_cols=85 Identities=13% Similarity=0.089 Sum_probs=61.1
Q ss_pred cccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCc-hhHHHHHHHhhhcccCCceEEEEeeCccccc
Q psy1221 587 IVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKT-SEVDKVLSDYGTSVEKGGALMLSVIGGKLSE 665 (690)
Q Consensus 587 ~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~-~~~~~~l~~f~~~~~~~~aiLfaV~gG~~sE 665 (690)
.....++||..+-..++.+.+.+...++ +.+.+.+..+ .++++++++|+..-...-.+|+++ ...++
T Consensus 414 ~~~~k~lIFs~~~~~~~~l~~~l~~~g~----------~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st--~a~g~ 481 (644)
T 1z3i_X 414 TTSDKVVLVSNYTQTLDLFEKLCRNRRY----------LYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSS--KAGGC 481 (644)
T ss_dssp HCCCEEEEEESCHHHHHHHHHHHHHHTC----------CEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEG--GGSCT
T ss_pred cCCCEEEEEEccHHHHHHHHHHHHHCCC----------CEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEec--ccccC
Confidence 3456788888888888888887775443 3455666554 389999999987510011366666 78999
Q ss_pred ccccCCCcceEEEEEcCCCC
Q psy1221 666 GLNFSDDLGRCVVVMCNSNP 685 (690)
Q Consensus 666 GIDf~g~~~r~ViivgLPfp 685 (690)
|||+++ +..||+..+|.-
T Consensus 482 Glnl~~--a~~Vi~~d~~wn 499 (644)
T 1z3i_X 482 GLNLIG--ANRLVMFDPDWN 499 (644)
T ss_dssp TCCCTT--EEEEEECSCCSS
T ss_pred Cccccc--CCEEEEECCCCC
Confidence 999986 899999988853
No 94
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=89.87 E-value=0.29 Score=53.33 Aligned_cols=70 Identities=14% Similarity=0.168 Sum_probs=46.9
Q ss_pred cCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCchhHHHHHHHhhhcccCCceEEEEeeCcccccccc
Q psy1221 589 PKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKTSEVDKVLSDYGTSVEKGGALMLSVIGGKLSEGLN 668 (690)
Q Consensus 589 ~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~~~~~~~l~~f~~~~~~~~aiLfaV~gG~~sEGID 668 (690)
++.++||++|....+.+++.+++.+. +...+-+ .++.+.+++|++. +-.||+|+ ..+.+|||
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~~~----------~v~~lhg---~~R~~~~~~F~~g---~~~vLVaT--~v~e~GiD 238 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKAGK----------SVVVLNR---KTFEREYPTIKQK---KPDFILAT--DIAEMGAN 238 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTC----------CEEECCS---SSCC--------C---CCSEEEES--SSTTCCTT
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCC----------CEEEecc---hhHHHHHhhhcCC---CceEEEEC--Chhheeec
Confidence 67899999999999999999986432 2233333 3456789999876 56899888 88999999
Q ss_pred cCCCcceEEEE
Q psy1221 669 FSDDLGRCVVV 679 (690)
Q Consensus 669 f~g~~~r~Vii 679 (690)
+| ++.||.
T Consensus 239 ip---v~~VI~ 246 (440)
T 1yks_A 239 LC---VERVLD 246 (440)
T ss_dssp CC---CSEEEE
T ss_pred cC---ceEEEe
Confidence 98 666664
No 95
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=89.56 E-value=1.7 Score=55.21 Aligned_cols=156 Identities=11% Similarity=0.090 Sum_probs=80.4
Q ss_pred ceEEEeCCCCCchhhHHHHhhccCCCCCCceEEEEeCCCccCCCeeEEEeecCCCCcceeeeccccCChHHHHHHHHHHH
Q psy1221 503 RSIIVAGGTMEPVSEFKDQLFGSLGVPESRIHHFSCGHVIPKENILPLILCSGPTNRKFDLTFENRTKGDTLKEIAMTIT 582 (690)
Q Consensus 503 ~svil~SgTLsP~~~f~~~l~~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~I~ 582 (690)
-.+|.+|||+.+.+.+++.|. ...... .+..++.+.+-.+.-.++. ...+......+.+.+.+.
T Consensus 245 ~riI~LSATl~N~~dvA~wL~----~~~~~~-~~~~~~~~RPvpL~~~~~~-----------~~~~~~~~~~~~~~~~~~ 308 (1724)
T 4f92_B 245 VRLIGLSATLPNYEDVATFLR----VDPAKG-LFYFDNSFRPVPLEQTYVG-----------ITEKKAIKRFQIMNEIVY 308 (1724)
T ss_dssp CEEEEEECSCTTHHHHHHHTT----CCHHHH-EEECCGGGCSSCEEEECCE-----------ECCCCHHHHHHHHHHHHH
T ss_pred CcEEEEecccCCHHHHHHHhC----CCCCCC-eEEECCCCccCccEEEEec-----------cCCcchhhhhHHHHHHHH
Confidence 368999999999899988773 221111 1112221211111111110 011111122233333343
Q ss_pred Hhhh-cc-cCcEEEEeccHHHHHHHHHHHHhcCch---------------h------------HHHHHhcCceEEEcCCC
Q psy1221 583 NLCT-IV-PKGMVCFFPSYDYEAIVYNYMRDNHFI---------------E------------RIARIAKKKVVFREPKK 633 (690)
Q Consensus 583 ~l~~-~~-~gg~lVfF~Sy~~l~~v~~~~~~~~~~---------------~------------~~~~~~~~~~i~~E~~~ 633 (690)
+.+. .. .+.+|||.+|...-+.+.+.+.+.... + .+.++-....-+.-.+.
T Consensus 309 ~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL 388 (1724)
T 4f92_B 309 EKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGM 388 (1724)
T ss_dssp HHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSS
T ss_pred HHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCC
Confidence 3332 22 456999999987777766665431000 0 00011111122333333
Q ss_pred c-hhHHHHHHHhhhcccCCceEEEEeeCcccccccccCCCcceEEEEEcC
Q psy1221 634 T-SEVDKVLSDYGTSVEKGGALMLSVIGGKLSEGLNFSDDLGRCVVVMCN 682 (690)
Q Consensus 634 ~-~~~~~~l~~f~~~~~~~~aiLfaV~gG~~sEGIDf~g~~~r~ViivgL 682 (690)
. .++..+-+.|++. .=.||+|+ ..++.|||+| ++.|||-|.
T Consensus 389 ~~~~R~~vE~~F~~G---~i~vlvaT--sTLa~GVNlP---a~~vVI~~~ 430 (1724)
T 4f92_B 389 TRVDRTLVEDLFADK---HIQVLVST--ATLAWGVNLP---AHTVIIKGT 430 (1724)
T ss_dssp CTHHHHHHHHHHHTT---CCCEEEEC--HHHHHHSCCC---BSEEEEECC
T ss_pred CHHHHHHHHHHHHCC---CCeEEEEc--chhHhhCCCC---CceEEEeCC
Confidence 3 3677777778875 45678777 8899999999 477888765
No 96
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=89.56 E-value=0.97 Score=53.13 Aligned_cols=96 Identities=13% Similarity=0.087 Sum_probs=68.3
Q ss_pred HHHHHHHHHhhhcccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCch-hHHHHHHHhhhcccCCce
Q psy1221 575 KEIAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKTS-EVDKVLSDYGTSVEKGGA 653 (690)
Q Consensus 575 ~~l~~~I~~l~~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~~-~~~~~l~~f~~~~~~~~a 653 (690)
..+.+.|.++. ..+..+|||...-.+++.+.+.+...++ +...+.+..+. ++.+++++|+..-...-.
T Consensus 559 ~~L~~lL~~~~-~~g~kvLIFsq~~~~ld~L~~~L~~~g~----------~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v 627 (800)
T 3mwy_W 559 VLLDQLLTRLK-KDGHRVLIFSQMVRMLDILGDYLSIKGI----------NFQRLDGTVPSAQRRISIDHFNSPDSNDFV 627 (800)
T ss_dssp HHHHHHHHHHT-TTTCCEEEEESCHHHHHHHHHHHHHHTC----------CCEEESTTSCHHHHHHHHHTTSSTTCSCCC
T ss_pred HHHHHHHHHHh-hCCCeEEEEechHHHHHHHHHHHHhCCC----------CEEEEeCCCCHHHHHHHHHHhhCCCCCceE
Confidence 33444444432 3456899999999999999888875443 34566666554 899999999874111124
Q ss_pred EEEEeeCcccccccccCCCcceEEEEEcCCCC
Q psy1221 654 LMLSVIGGKLSEGLNFSDDLGRCVVVMCNSNP 685 (690)
Q Consensus 654 iLfaV~gG~~sEGIDf~g~~~r~ViivgLPfp 685 (690)
+|+++ ...+||||++. +..||+...|+-
T Consensus 628 ~LlSt--~agg~GlNL~~--a~~VI~~D~~wn 655 (800)
T 3mwy_W 628 FLLST--RAGGLGINLMT--ADTVVIFDSDWN 655 (800)
T ss_dssp EEEEH--HHHTTTCCCTT--CCEEEESSCCSC
T ss_pred EEEec--ccccCCCCccc--cceEEEecCCCC
Confidence 77776 78999999987 899999998864
No 97
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=88.80 E-value=1.3 Score=51.02 Aligned_cols=80 Identities=9% Similarity=0.015 Sum_probs=61.3
Q ss_pred cCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCch-hHHHHHHHhhhcccCCceEEEEeeCccccccc
Q psy1221 589 PKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKTS-EVDKVLSDYGTSVEKGGALMLSVIGGKLSEGL 667 (690)
Q Consensus 589 ~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~~-~~~~~l~~f~~~~~~~~aiLfaV~gG~~sEGI 667 (690)
+.|.+|||.|....+.+.+.+.+.+. +...+-++.+. ++...++.|+.. ...-.||+|+ ..+..||
T Consensus 320 ~~g~iIf~~s~~~ie~la~~L~~~g~----------~v~~lHG~L~~~~R~~~~~~F~~~-~g~~~VLVAT--di~e~Gl 386 (677)
T 3rc3_A 320 RPGDCIVCFSKNDIYSVSRQIEIRGL----------ESAVIYGSLPPGTKLAQAKKFNDP-NDPCKILVAT--DAIGMGL 386 (677)
T ss_dssp CTTEEEECSSHHHHHHHHHHHHHTTC----------CCEEECTTSCHHHHHHHHHHHHCT-TSSCCEEEEC--GGGGSSC
T ss_pred CCCCEEEEcCHHHHHHHHHHHHhcCC----------CeeeeeccCCHHHHHHHHHHHHcc-CCCeEEEEeC--cHHHCCc
Confidence 56778889999999999998885432 34555555443 678999999971 0145789888 8899999
Q ss_pred ccCCCcceEEEEEcCCC
Q psy1221 668 NFSDDLGRCVVVMCNSN 684 (690)
Q Consensus 668 Df~g~~~r~ViivgLPf 684 (690)
|+ + ++.||..|++-
T Consensus 387 Di-~--v~~VI~~~~~k 400 (677)
T 3rc3_A 387 NL-S--IRRIIFYSLIK 400 (677)
T ss_dssp CC-C--BSEEEESCSBC
T ss_pred Cc-C--ccEEEECCccc
Confidence 99 4 99999999964
No 98
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=87.91 E-value=2.7 Score=49.01 Aligned_cols=138 Identities=13% Similarity=0.083 Sum_probs=79.7
Q ss_pred hhHHHHHhhcceEEEeCCCCCc-hhhHHHHhhccCCCCCCceEEEEeCCCccCCCeeEEEeecCCCCcceeeeccccCCh
Q psy1221 493 NHFTDIVQDARSIIVAGGTMEP-VSEFKDQLFGSLGVPESRIHHFSCGHVIPKENILPLILCSGPTNRKFDLTFENRTKG 571 (690)
Q Consensus 493 ~~~~~~~~~~~svil~SgTLsP-~~~f~~~l~~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 571 (690)
..++..+.....+.-|+||... .+.|.... |++ + +..|.-.|-.. . +.+ ..-|.+ ..
T Consensus 367 It~qnyfr~Y~kl~GmTGTa~te~~ef~~iY----~l~---v--v~IPtn~p~~R----~--d~~-----d~v~~~--~~ 424 (853)
T 2fsf_A 367 ITFQNYFRLYEKLAGMTGTADTEAFEFSSIY----KLD---T--VVVPTNRPMIR----K--DLP-----DLVYMT--EA 424 (853)
T ss_dssp EEHHHHHTTSSEEEEEECTTCCCHHHHHHHH----CCE---E--EECCCSSCCCC----E--ECC-----CEEESS--HH
T ss_pred eehHHHHhhhhhhhcCCCCchhHHHHHHHHh----CCc---E--EEcCCCCCcee----e--cCC-----cEEEeC--HH
Confidence 4456666677789999999953 45565544 442 2 22221111000 0 000 011222 23
Q ss_pred HHHHHHHHHHHHhhhcccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCchhHHH--HHHHhhhccc
Q psy1221 572 DTLKEIAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKTSEVDK--VLSDYGTSVE 649 (690)
Q Consensus 572 ~~~~~l~~~I~~l~~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~~~~~~--~l~~f~~~~~ 649 (690)
+-...+.+.|.+.. ..+..+|||+.|-..-+.+.+.+++.++. ...+-.+ ..+++. +.+.|+
T Consensus 425 ~K~~al~~~i~~~~-~~gqpvLVft~sie~se~Ls~~L~~~gi~----------~~vLnak-~~~rEa~iia~agr---- 488 (853)
T 2fsf_A 425 EKIQAIIEDIKERT-AKGQPVLVGTISIEKSELVSNELTKAGIK----------HNVLNAK-FHANEAAIVAQAGY---- 488 (853)
T ss_dssp HHHHHHHHHHHHHH-TTTCCEEEEESSHHHHHHHHHHHHHTTCC----------CEECCTT-CHHHHHHHHHTTTS----
T ss_pred HHHHHHHHHHHHHh-cCCCCEEEEECcHHHHHHHHHHHHHCCCC----------EEEecCC-hhHHHHHHHHhcCC----
Confidence 44556666665443 23456999999999999999999977653 1222222 233333 334443
Q ss_pred CCceEEEEeeCcccccccccCC
Q psy1221 650 KGGALMLSVIGGKLSEGLNFSD 671 (690)
Q Consensus 650 ~~~aiLfaV~gG~~sEGIDf~g 671 (690)
.|+|+.|+ .-.+.|+|++.
T Consensus 489 -~G~VtIAT--nmAgRGtDI~l 507 (853)
T 2fsf_A 489 -PAAVTIAT--NMAGRGTDIVL 507 (853)
T ss_dssp -TTCEEEEE--SCCSSCSCCCT
T ss_pred -CCeEEEec--ccccCCcCccC
Confidence 47899999 88999999996
No 99
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=87.76 E-value=6.3 Score=46.04 Aligned_cols=153 Identities=12% Similarity=0.198 Sum_probs=86.1
Q ss_pred hhHHHHHhhcceEEEeCCCCCc-hhhHHHHhhccCCCCCCceEEEEeCCCccCCCeeEEEeecCCCCcceeeeccccCCh
Q psy1221 493 NHFTDIVQDARSIIVAGGTMEP-VSEFKDQLFGSLGVPESRIHHFSCGHVIPKENILPLILCSGPTNRKFDLTFENRTKG 571 (690)
Q Consensus 493 ~~~~~~~~~~~svil~SgTLsP-~~~f~~~l~~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 571 (690)
..++..+.....+.-++||... ...|.... |++ +..+....|+... +.+ ...|.+ ..
T Consensus 358 It~q~~fr~y~kl~GmTGTa~te~~e~~~iY----~l~---vv~IPtn~p~~r~--------d~~-----d~v~~~--~~ 415 (844)
T 1tf5_A 358 ITFQNYFRMYEKLAGMTGTAKTEEEEFRNIY----NMQ---VVTIPTNRPVVRD--------DRP-----DLIYRT--ME 415 (844)
T ss_dssp EEHHHHHTTSSEEEEEESCCGGGHHHHHHHH----CCC---EEECCCSSCCCCE--------ECC-----CEEESS--HH
T ss_pred eeHHHHHHHHhhhccCCcccchhHHHHHHHh----CCc---eEEecCCCCcccc--------cCC-----cEEEeC--HH
Confidence 3455556667778899999954 34454444 442 2221111111100 000 011222 23
Q ss_pred HHHHHHHHHHHHhhhcccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCchhHHHHHHHhhhcccCC
Q psy1221 572 DTLKEIAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKTSEVDKVLSDYGTSVEKG 651 (690)
Q Consensus 572 ~~~~~l~~~I~~l~~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~~~~~~~l~~f~~~~~~~ 651 (690)
+-...+.+.|.+.. ..+..+|||+.|-...+.+.+.+++.++. ...+-.. ..+++..+-.+.- ..
T Consensus 416 ~K~~al~~~i~~~~-~~~~pvLVft~s~~~se~Ls~~L~~~gi~----------~~vLhg~-~~~rEr~ii~~ag---~~ 480 (844)
T 1tf5_A 416 GKFKAVAEDVAQRY-MTGQPVLVGTVAVETSELISKLLKNKGIP----------HQVLNAK-NHEREAQIIEEAG---QK 480 (844)
T ss_dssp HHHHHHHHHHHHHH-HHTCCEEEEESCHHHHHHHHHHHHTTTCC----------CEEECSS-CHHHHHHHHTTTT---ST
T ss_pred HHHHHHHHHHHHHH-hcCCcEEEEECCHHHHHHHHHHHHHCCCC----------EEEeeCC-ccHHHHHHHHHcC---CC
Confidence 44555666665543 23456999999999999999999976653 2223332 2333332222211 14
Q ss_pred ceEEEEeeCcccccccccCC-C-----cceEEEEEcCCC
Q psy1221 652 GALMLSVIGGKLSEGLNFSD-D-----LGRCVVVMCNSN 684 (690)
Q Consensus 652 ~aiLfaV~gG~~sEGIDf~g-~-----~~r~ViivgLPf 684 (690)
++|++|+ .-.+.|+|++- + .+.+||-.-+|-
T Consensus 481 g~VlIAT--dmAgRG~DI~l~~~V~~~ggl~VIn~d~p~ 517 (844)
T 1tf5_A 481 GAVTIAT--NMAGRGTDIKLGEGVKELGGLAVVGTERHE 517 (844)
T ss_dssp TCEEEEE--TTSSTTCCCCCCTTSGGGTSEEEEESSCCS
T ss_pred CeEEEeC--CccccCcCccccchhhhcCCcEEEEecCCC
Confidence 7899988 89999999982 2 355888877774
No 100
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=81.94 E-value=12 Score=43.97 Aligned_cols=139 Identities=9% Similarity=0.072 Sum_probs=79.9
Q ss_pred hhHHHHHhhcceEEEeCCCCCc-hhhHHHHhhccCCCCCCceEEEEeCCCccCCCeeEEEeecCCCCcceeeeccccCCh
Q psy1221 493 NHFTDIVQDARSIIVAGGTMEP-VSEFKDQLFGSLGVPESRIHHFSCGHVIPKENILPLILCSGPTNRKFDLTFENRTKG 571 (690)
Q Consensus 493 ~~~~~~~~~~~svil~SgTLsP-~~~f~~~l~~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 571 (690)
..++..+.....+.-|+||+.. ...|.... |++ + +..|.-.|.... +.+ ..-|.+ ..
T Consensus 386 It~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY----~l~---v--v~IPtn~p~~R~------d~~-----d~v~~t--~~ 443 (922)
T 1nkt_A 386 ITLQNYFRLYDKLAGMTGTAQTEAAELHEIY----KLG---V--VSIPTNMPMIRE------DQS-----DLIYKT--EE 443 (922)
T ss_dssp ECHHHHHTTSSEEEEEESCCGGGHHHHHHHH----CCE---E--EECCCSSCCCCE------ECC-----CEEESC--HH
T ss_pred eehHHHHHhhhhhhccccCchhHHHHHHHHh----CCC---e--EEeCCCCCcccc------cCC-----cEEEeC--HH
Confidence 4456666667788999999954 34554444 442 2 222221111000 000 011222 23
Q ss_pred HHHHHHHHHHHHhhhcccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCchhHHH--HHHHhhhccc
Q psy1221 572 DTLKEIAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKTSEVDK--VLSDYGTSVE 649 (690)
Q Consensus 572 ~~~~~l~~~I~~l~~~~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~~~~~~--~l~~f~~~~~ 649 (690)
+-...+.+.|.+.. ..+..+|||+.|-..-+.+.+.+++.++. .-.+-.+ ..+++. +.+.++
T Consensus 444 ~K~~al~~~i~~~~-~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~----------~~vLnak-~~~rEa~iia~agr---- 507 (922)
T 1nkt_A 444 AKYIAVVDDVAERY-AKGQPVLIGTTSVERSEYLSRQFTKRRIP----------HNVLNAK-YHEQEATIIAVAGR---- 507 (922)
T ss_dssp HHHHHHHHHHHHHH-HTTCCEEEEESCHHHHHHHHHHHHHTTCC----------CEEECSS-CHHHHHHHHHTTTS----
T ss_pred HHHHHHHHHHHHHH-hcCCcEEEEECCHHHHHHHHHHHHHCCCC----------EEEecCC-hhHHHHHHHHhcCC----
Confidence 44556666665543 23346999999999999999999987653 2222332 233333 333333
Q ss_pred CCceEEEEeeCcccccccccCCC
Q psy1221 650 KGGALMLSVIGGKLSEGLNFSDD 672 (690)
Q Consensus 650 ~~~aiLfaV~gG~~sEGIDf~g~ 672 (690)
.|+|++|+ .-.+.|+|++.-
T Consensus 508 -~G~VtIAT--nmAgRGtDI~l~ 527 (922)
T 1nkt_A 508 -RGGVTVAT--NMAGRGTDIVLG 527 (922)
T ss_dssp -TTCEEEEE--TTCSTTCCCCTT
T ss_pred -CCeEEEec--chhhcCccccCC
Confidence 47999998 889999999963
No 101
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=71.97 E-value=4.5 Score=46.26 Aligned_cols=70 Identities=11% Similarity=-0.049 Sum_probs=51.3
Q ss_pred ccCcEEEEeccHHHHHHHHHHHHhcCchhHHHHHhcCceEEEcCCCchhHHHHHHHhhhcccCCceEEEEeeCccccccc
Q psy1221 588 VPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKTSEVDKVLSDYGTSVEKGGALMLSVIGGKLSEGL 667 (690)
Q Consensus 588 ~~gg~lVfF~Sy~~l~~v~~~~~~~~~~~~~~~~~~~~~i~~E~~~~~~~~~~l~~f~~~~~~~~aiLfaV~gG~~sEGI 667 (690)
.++.+|||+++.+..+.+++.+++.++ +...+-.....+ +|++. +..||+|+ ..+.+||
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~g~----------~v~~lHG~l~q~------er~~~---~~~VLVAT--dVaerGI 453 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGLGI----------NAVAYYRGLDVS------VIPTI---GDVVVVAT--DALMTGY 453 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTTTC----------CEEEECTTSCGG------GSCSS---SCEEEEEC--TTHHHHC
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhCCC----------cEEEecCCCCHH------HHHhC---CCcEEEEC--ChHHccC
Confidence 578899999999999999999986543 233444443321 23333 45899988 8899999
Q ss_pred ccCCCcceEEEEEc
Q psy1221 668 NFSDDLGRCVVVMC 681 (690)
Q Consensus 668 Df~g~~~r~Viivg 681 (690)
|++ ++.||-+|
T Consensus 454 DId---V~~VI~~G 464 (666)
T 3o8b_A 454 TGD---FDSVIDCN 464 (666)
T ss_dssp CCC---BSEEEECC
T ss_pred CCC---CcEEEecC
Confidence 973 99999766
No 102
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=71.90 E-value=5.4 Score=43.42 Aligned_cols=81 Identities=11% Similarity=-0.039 Sum_probs=54.1
Q ss_pred cceeeeeHHHHH-HHHHhhhhc-------c--------CCcccCCceeEEEE-eCC--ccchHHHHhHhhhhhcCCccc-
Q psy1221 137 SCREDIGVERLF-SIIENRNAE-------Q--------GVKVKTTSTQVYVA-SAQ--KNLVEPRMQLCHELWGGEKTQ- 196 (690)
Q Consensus 137 ~~g~~~~~~~l~-~~~~~~~~~-------~--------~~~~~~~~~~v~v~-~~~--~~~~~~~~~l~~~L~~~~i~~- 196 (690)
-+..++|++|++ .++...-.+ . ....+..+.+|+|+ +.+ +...+.+.+|++.|++.++..
T Consensus 293 vi~~s~Gv~R~i~aile~~~~~~~~~~~~g~d~~r~~l~~P~~lAP~qV~Ii~~~~~~e~~~~~A~~l~~~Lr~~Gi~v~ 372 (454)
T 1g5h_A 293 VLSVSGDVDLGTLAYLYDSFQLAENSFARKKSLQRKVLKLHPCLAPIKVALDVGKGPTVELRQVCQGLLNELLENGISVW 372 (454)
T ss_dssp EEEEEEEHHHHHHHHHHHHEEC------------CCEECCCTTTCSCCEEEEECSSCHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred EEeCcccHHHHHHHHHHHhcchhhcccccCCcccceeEecCcccCCCeEEEEEeCCCcHHHHHHHHHHHHHHHHCCCEEE
Confidence 345799999997 555432111 0 11223456899998 665 556778899999999965443
Q ss_pred --CCcc-cccHHHHHhhhhhcCCC
Q psy1221 197 --EKPK-LSGLQSFLKGVQENNPN 217 (690)
Q Consensus 197 --~~~~-~~~Lk~~lk~~~kl~~~ 217 (690)
.+.. ..++...++.+++.+..
T Consensus 373 ~~~Ddr~~~sigkk~r~Ad~~GiP 396 (454)
T 1g5h_A 373 PGYSETVHSSLEQLHSKYDEMSVL 396 (454)
T ss_dssp EGGGSCCCSCHHHHHHHHHHTTCS
T ss_pred EEecCCCCCCHHHHHHHHHHcCCC
Confidence 3432 56899999999888753
No 103
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=59.27 E-value=58 Score=39.16 Aligned_cols=40 Identities=10% Similarity=0.106 Sum_probs=30.1
Q ss_pred HHHHHHHhhhcccCCceEEEEeeCcccccccccCCCcceEEEEEcCCC
Q psy1221 637 VDKVLSDYGTSVEKGGALMLSVIGGKLSEGLNFSDDLGRCVVVMCNSN 684 (690)
Q Consensus 637 ~~~~l~~f~~~~~~~~aiLfaV~gG~~sEGIDf~g~~~r~ViivgLPf 684 (690)
+..++++|+.. +--||++| +.+.+|+|.|.- .++.+-.|.
T Consensus 638 R~~i~~~Fk~g---~i~ILIvv--d~lltGfDiP~l---~tlylDkpl 677 (1038)
T 2w00_A 638 YRDLAQRVKNQ---DIDLLIVV--GMFLTGFDAPTL---NTLFVDKNL 677 (1038)
T ss_dssp HHHHHHHHHTT---SSSEEEES--STTSSSCCCTTE---EEEEEESCC
T ss_pred HHHHHHHHHcC---CCeEEEEc--chHHhCcCcccc---cEEEEccCC
Confidence 55677788764 56889888 999999999984 455555664
No 104
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=48.84 E-value=60 Score=33.33 Aligned_cols=22 Identities=14% Similarity=0.051 Sum_probs=18.9
Q ss_pred cCCeEEEEcCccchHHHHHhhc
Q psy1221 378 VPKGMVCFFPSYDYEAIVYNYM 399 (690)
Q Consensus 378 ~pgg~lvFFpSY~~l~~v~~~~ 399 (690)
..+.+|||++|....+.+++.+
T Consensus 249 ~~~~~lvf~~~~~~~~~l~~~L 270 (391)
T 1xti_A 249 EFNQVVIFVKSVQRCIALAQLL 270 (391)
T ss_dssp CCSEEEEECSCHHHHHHHHHHH
T ss_pred CCCcEEEEeCcHHHHHHHHHHH
Confidence 4578999999999988888866
No 105
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=47.77 E-value=30 Score=40.22 Aligned_cols=83 Identities=13% Similarity=0.209 Sum_probs=49.2
Q ss_pred ccEEEEecccCCChhhhHHhhccCCCCCCCceEeeecCCccCCCCeeEEEeecCCCCceeEEeecccCChHHHHHHHHHH
Q psy1221 292 ARSIIVAGGTMEPVSEFKDQLFGSLGVPESRIHHFSCGHVIPKENILPLILCSGPTNRKFDLTFENRTKGDTLKEIAMTI 371 (690)
Q Consensus 292 ~~svIl~SGTL~P~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~y~~R~~~~~~~~l~~~i 371 (690)
..-+|++|||+. .+.+.+.+ +- ..++... +..+ ++...|......++.......+
T Consensus 240 ~~~iIl~SAT~~-~~~l~~~~----~~--~~vi~v~-gr~~-----------------pv~~~~~~~~~~~~~~~~l~~l 294 (773)
T 2xau_A 240 DLKIIIMSATLD-AEKFQRYF----ND--APLLAVP-GRTY-----------------PVELYYTPEFQRDYLDSAIRTV 294 (773)
T ss_dssp TCEEEEEESCSC-CHHHHHHT----TS--CCEEECC-CCCC-----------------CEEEECCSSCCSCHHHHHHHHH
T ss_pred CceEEEEecccc-HHHHHHHh----cC--CCccccc-Cccc-----------------ceEEEEecCCchhHHHHHHHHH
Confidence 356999999995 46666654 21 1111111 1111 1222233333344566666667
Q ss_pred HHHHhc-cCCeEEEEcCccchHHHHHhhc
Q psy1221 372 TNLCTI-VPKGMVCFFPSYDYEAIVYNYM 399 (690)
Q Consensus 372 ~~~~~~-~pgg~lvFFpSY~~l~~v~~~~ 399 (690)
.++... -+|.+|||+|+-.-.+.+...+
T Consensus 295 ~~~~~~~~~g~iLVF~~~~~~i~~l~~~L 323 (773)
T 2xau_A 295 LQIHATEEAGDILLFLTGEDEIEDAVRKI 323 (773)
T ss_dssp HHHHHHSCSCEEEEECSCHHHHHHHHHHH
T ss_pred HHHHHhcCCCCEEEECCCHHHHHHHHHHH
Confidence 666554 5789999999998888877766
No 106
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=41.38 E-value=65 Score=32.93 Aligned_cols=29 Identities=14% Similarity=0.319 Sum_probs=21.4
Q ss_pred HHHHHhc-cCCeEEEEcCccchHHHHHhhc
Q psy1221 371 ITNLCTI-VPKGMVCFFPSYDYEAIVYNYM 399 (690)
Q Consensus 371 i~~~~~~-~pgg~lvFFpSY~~l~~v~~~~ 399 (690)
+..+... ..+.+|||++|....+.+++.+
T Consensus 234 l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l 263 (395)
T 3pey_A 234 LTELYGLMTIGSSIIFVATKKTANVLYGKL 263 (395)
T ss_dssp HHHHHTTTTSSEEEEECSCHHHHHHHHHHH
T ss_pred HHHHHHhccCCCEEEEeCCHHHHHHHHHHH
Confidence 3334443 4478999999999988888866
No 107
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=40.38 E-value=53 Score=37.47 Aligned_cols=106 Identities=9% Similarity=0.137 Sum_probs=52.1
Q ss_pred HHHHHHHhc--ccEEEEecccCCChhhhHHhhccCCCCCCCceEeeecCCccCCCCeeEEEeecCCCCceeEEeecccCC
Q psy1221 283 NHFTDIVQD--ARSIIVAGGTMEPVSEFKDQLFGSLGVPESRIHHFSCGHVIPKENILPLILCSGPTNRKFDLTFENRTK 360 (690)
Q Consensus 283 ~~l~~~~~~--~~svIl~SGTL~P~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~y~~R~~ 360 (690)
..+..++.. ..-+|++|||+...+.+.+.| |.+ .+ .....++| +...+...+.....+...|.....
T Consensus 164 ~~l~~i~~~~~~~~ii~lSATl~n~~~~~~~l----~~~---~~-~~~~r~~~---l~~~~~~~~~~~~~~~~~~~~~~~ 232 (715)
T 2va8_A 164 PVVESVTIRAKRRNLLALSATISNYKQIAKWL----GAE---PV-ATNWRPVP---LIEGVIYPERKKKEYNVIFKDNTT 232 (715)
T ss_dssp HHHHHHHHHHHTSEEEEEESCCTTHHHHHHHH----TCE---EE-ECCCCSSC---EEEEEEEECSSTTEEEEEETTSCE
T ss_pred hHHHHHHHhcccCcEEEEcCCCCCHHHHHHHh----CCC---cc-CCCCCCCC---ceEEEEecCCcccceeeecCcchh
Confidence 344544433 356899999998778888877 421 11 11112222 111111111111112222322100
Q ss_pred hHH--HHHHHHHHHHHHhccCCeEEEEcCccchHHHHHhhcC
Q psy1221 361 GDT--LKEIAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYMP 400 (690)
Q Consensus 361 ~~~--~~~l~~~i~~~~~~~pgg~lvFFpSY~~l~~v~~~~~ 400 (690)
..+ .+.....+.++.+ -++.+|||.||-.-.+.+...+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~-~~~~~LVF~~s~~~~~~~a~~L~ 273 (715)
T 2va8_A 233 KKVHGDDAIIAYTLDSLS-KNGQVLVFRNSRKMAESTALKIA 273 (715)
T ss_dssp EEEESSSHHHHHHHHHHT-TTCCEEEECSSHHHHHHHHHHHH
T ss_pred hhcccchHHHHHHHHHHh-cCCCEEEEECCHHHHHHHHHHHH
Confidence 000 0123333444333 46899999999998888877663
No 108
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=39.38 E-value=29 Score=37.36 Aligned_cols=64 Identities=20% Similarity=0.302 Sum_probs=35.5
Q ss_pred eeEEEEEEc-CCCcceEeecc----chhhhhhhcCCCCCCCCccchhhhhhhhccccc----ccCcceeeeeHHHHHHHH
Q psy1221 81 GVIYEAVLK-DQAVGSVAGGG----RYDNLVGMFDPKNKTTPCVAAKLLHEVQGLLET----SCRSCREDIGVERLFSII 151 (690)
Q Consensus 81 G~vFe~~~~-~~~~~~i~~GG----RYD~L~~~f~~~~~~~~~~g~~~~~~~~~~~~~----~~~~~g~~~~~~~l~~~~ 151 (690)
---|+.+.+ + .+.|++|+ +|+.+.++|...+.+.. +....++- .++..||++|+|||+.++
T Consensus 344 ~~~fDl~~~~G--~gEi~~G~~r~~d~~~q~~rf~~~g~~~~--------~~~~yl~al~yG~PP~~G~glGiDRLvmll 413 (434)
T 1x54_A 344 VLASDMLAPEG--YGEIIGGSQREDDYDKLLNRILEEGMDPK--------DYEWYLDLRRYGSVPHSGFGLGVERLVAWV 413 (434)
T ss_dssp EEEEEEEETTT--TEEEEEEEEBCCCHHHHHHHHHHTTCCGG--------GGHHHHHTTTSSCCCEEEEEEEHHHHHHHH
T ss_pred EEEEEEEECCC--ceEEecCeEeeCCHHHHHHHHHHcCCChH--------HHHHHHHHHhcCCCCceEEEEcHHHHHHHH
Confidence 346999987 5 34788774 35555555532110000 01111110 134557999999999988
Q ss_pred Hhh
Q psy1221 152 ENR 154 (690)
Q Consensus 152 ~~~ 154 (690)
-..
T Consensus 414 ~g~ 416 (434)
T 1x54_A 414 LKL 416 (434)
T ss_dssp TTC
T ss_pred cCC
Confidence 753
No 109
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=39.20 E-value=29 Score=37.28 Aligned_cols=19 Identities=16% Similarity=0.317 Sum_probs=15.3
Q ss_pred CcceeeeeHHHHHHHHHhh
Q psy1221 136 RSCREDIGVERLFSIIENR 154 (690)
Q Consensus 136 ~~~g~~~~~~~l~~~~~~~ 154 (690)
+..||++|+|||+.++-..
T Consensus 393 P~~G~glGiDRLvmll~g~ 411 (429)
T 1wyd_A 393 PHAGFGMGLARLMVMLTGI 411 (429)
T ss_dssp CEEEEEEEHHHHHHHHHCC
T ss_pred CceEEEEcHHHHHHHHcCC
Confidence 4457999999999988754
No 110
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=38.84 E-value=32 Score=37.34 Aligned_cols=65 Identities=25% Similarity=0.381 Sum_probs=38.6
Q ss_pred EEEEEEcCCCcceEeec----cchhhhhhhcCCCCCCCCccchhhhhhhhcc-cccccCcceeeeeHHHHHHHHHhh
Q psy1221 83 IYEAVLKDQAVGSVAGG----GRYDNLVGMFDPKNKTTPCVAAKLLHEVQGL-LETSCRSCREDIGVERLFSIIENR 154 (690)
Q Consensus 83 vFe~~~~~~~~~~i~~G----GRYD~L~~~f~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~g~~~~~~~l~~~~~~~ 154 (690)
-|+.+.++ .+.|++| =+|+.|.++|...+.+..+.. --+.-+ .+ .++.-||+||+|||+.++-..
T Consensus 369 rfdL~~~G--~gEi~~G~~r~~d~~~l~~r~~~~g~~~~~~~----~yld~~~~G-~pP~gG~GlGidRLvm~ltg~ 438 (456)
T 3m4p_A 369 SVDLLMPG--VGEIVGGSMRIWNYDELMGAYKANGLNPDPYY----WYTQQRKYG-SCPHGGYGLGVERLVMWLLGE 438 (456)
T ss_dssp EEEEEETT--TEEEEEEEEBCCCHHHHHHHHHTTTCCCGGGH----HHHGGGTSS-CCCEEEEEEEHHHHHHHHHTC
T ss_pred EEEEEeCC--ceEEccceeecCCHHHHHHHHHHcCCCHHHHH----HHHHHHHcC-CCcccEEEEcHHHHHHHHcCC
Confidence 59999976 2578888 479999998864221111100 000000 11 123348999999999887653
No 111
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=36.35 E-value=85 Score=32.35 Aligned_cols=22 Identities=5% Similarity=-0.029 Sum_probs=18.7
Q ss_pred cCCeEEEEcCccchHHHHHhhc
Q psy1221 378 VPKGMVCFFPSYDYEAIVYNYM 399 (690)
Q Consensus 378 ~pgg~lvFFpSY~~l~~v~~~~ 399 (690)
.++.+|||++|-...+.++..+
T Consensus 265 ~~~~~lvf~~~~~~~~~l~~~L 286 (412)
T 3fht_A 265 TIAQAMIFCHTRKTASWLAAEL 286 (412)
T ss_dssp SSSEEEEECSSHHHHHHHHHHH
T ss_pred CCCCEEEEeCCHHHHHHHHHHH
Confidence 4578999999999988888766
No 112
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=32.47 E-value=87 Score=33.85 Aligned_cols=81 Identities=11% Similarity=0.019 Sum_probs=50.4
Q ss_pred ceeeeeHHHHH-HHHHhhhhccC-------------C--cccCCceeEEEEeCC---ccchHHHHhHhhhhhcCCccc--
Q psy1221 138 CREDIGVERLF-SIIENRNAEQG-------------V--KVKTTSTQVYVASAQ---KNLVEPRMQLCHELWGGEKTQ-- 196 (690)
Q Consensus 138 ~g~~~~~~~l~-~~~~~~~~~~~-------------~--~~~~~~~~v~v~~~~---~~~~~~~~~l~~~L~~~~i~~-- 196 (690)
+.-++|++|++ .+|++.-.+.+ . ..+-.+.+|.|+... +.....+.+|+++|++.++..
T Consensus 304 i~~s~Gv~R~~~AiLe~~~de~~~~~~~~~~~~R~vl~lP~~LAP~qV~Iii~~~~~e~~~~~A~~L~~~Lr~~GIrV~~ 383 (459)
T 3ikl_A 304 LSVNGDLDRGMLAYLYDSFQLTENSFTRKKNLHRKVLKLHPCLAPIKVALDVGRGPTLELRQVCQGLFNELLENGISVWP 383 (459)
T ss_dssp EEEEEEHHHHHHHHHHTTCC-------------CCCCCCCTTTCSCCEEEEESSCCSTTHHHHHHHHHHHHHHTSCCEEC
T ss_pred EEecccHHHHHHHHHHHHhhhccccccccccccceEEEeCcccCCceEEEEeCCCCCHHHHHHHHHHHHHHHHCCCeEEE
Confidence 44799999976 55554211111 1 123456677776332 445678889999999965543
Q ss_pred -CCcc-cccHHHHHhhhhhcCCCC
Q psy1221 197 -EKPK-LSGLQSFLKGVQENNPNL 218 (690)
Q Consensus 197 -~~~~-~~~Lk~~lk~~~kl~~~~ 218 (690)
.+-. ..++...++.+++.+...
T Consensus 384 d~Ddr~~~siGkK~r~Ad~iGiPy 407 (459)
T 3ikl_A 384 GYLETMQSSLEQLYSKYDEMSILF 407 (459)
T ss_dssp GGGSSSCCTTHHHHHHHGGGTCSE
T ss_pred eecCCcCCCHHHHHHHHHHcCCCE
Confidence 2222 468999999999887644
No 113
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=31.98 E-value=1e+02 Score=34.41 Aligned_cols=87 Identities=13% Similarity=0.110 Sum_probs=49.6
Q ss_pred ccEEEEecccCCC--hhhhHHhhccCCCCCCCceEeeecCCccCCCCeeEEEeecCCCCceeEEeecccCChHHHHHHHH
Q psy1221 292 ARSIIVAGGTMEP--VSEFKDQLFGSLGVPESRIHHFSCGHVIPKENILPLILCSGPTNRKFDLTFENRTKGDTLKEIAM 369 (690)
Q Consensus 292 ~~svIl~SGTL~P--~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~y~~R~~~~~~~~l~~ 369 (690)
...+|++|||++| .+.+...| +++.. ..+.. .+.+.|+...+... .....+.++.+.+
T Consensus 200 ~~~ii~lSAT~~~~v~~~i~~~l----~~~~~--~~~~~--~~~r~nl~~~v~~~------------~~~~~~~~~~l~~ 259 (591)
T 2v1x_A 200 NASLIGLTATATNHVLTDAQKIL----CIEKC--FTFTA--SFNRPNLYYEVRQK------------PSNTEDFIEDIVK 259 (591)
T ss_dssp TSEEEEEESSCCHHHHHHHHHHT----TCCSC--EEEEC--CCCCTTEEEEEEEC------------CSSHHHHHHHHHH
T ss_pred CCcEEEEecCCCHHHHHHHHHHh----CCCCc--EEEec--CCCCcccEEEEEeC------------CCcHHHHHHHHHH
Confidence 3568999999988 35556666 55432 22222 25556665544321 1111223333333
Q ss_pred HHHHHHhccCCeEEEEcCccchHHHHHhhcC
Q psy1221 370 TITNLCTIVPKGMVCFFPSYDYEAIVYNYMP 400 (690)
Q Consensus 370 ~i~~~~~~~pgg~lvFFpSY~~l~~v~~~~~ 400 (690)
.|.+. ...+.+|||.+|-.-.+.+...++
T Consensus 260 ~l~~~--~~~~~~IVf~~sr~~~e~la~~L~ 288 (591)
T 2v1x_A 260 LINGR--YKGQSGIIYCFSQKDSEQVTVSLQ 288 (591)
T ss_dssp HHTTT--TTTCEEEEECSSHHHHHHHHHHHH
T ss_pred HHHHh--ccCCCeEEEeCcHHHHHHHHHHHH
Confidence 33221 135689999999999998888773
No 114
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=27.97 E-value=1.3e+02 Score=32.89 Aligned_cols=81 Identities=11% Similarity=0.102 Sum_probs=48.5
Q ss_pred cEEEEecccCCCh--hhhHHhhccCCCCCCCceEeeecCCccCCCCeeEEEeecCCCCceeEEeecccCChHHHHHHHHH
Q psy1221 293 RSIIVAGGTMEPV--SEFKDQLFGSLGVPESRIHHFSCGHVIPKENILPLILCSGPTNRKFDLTFENRTKGDTLKEIAMT 370 (690)
Q Consensus 293 ~svIl~SGTL~P~--~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~y~~R~~~~~~~~l~~~ 370 (690)
.-+|++|||+.+. +.+...| |+....+. .. .+...|+...+... .+..+.+.+.
T Consensus 175 ~~~i~lSAT~~~~~~~~i~~~l----~~~~~~~~--~~--~~~r~~l~~~v~~~----------------~~~~~~l~~~ 230 (523)
T 1oyw_A 175 LPFMALTATADDTTRQDIVRLL----GLNDPLIQ--IS--SFDRPNIRYMLMEK----------------FKPLDQLMRY 230 (523)
T ss_dssp SCEEEEESCCCHHHHHHHHHHH----TCCSCEEE--EC--CCCCTTEEEEEEEC----------------SSHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHh----CCCCCeEE--eC--CCCCCceEEEEEeC----------------CCHHHHHHHH
Confidence 4578999999884 5566667 55443222 12 24455655444321 1123444444
Q ss_pred HHHHHhccCCeEEEEcCccchHHHHHhhcC
Q psy1221 371 ITNLCTIVPKGMVCFFPSYDYEAIVYNYMP 400 (690)
Q Consensus 371 i~~~~~~~pgg~lvFFpSY~~l~~v~~~~~ 400 (690)
|.+ ...+.+|||++|-.-.+.+++.++
T Consensus 231 l~~---~~~~~~IVf~~sr~~~e~l~~~L~ 257 (523)
T 1oyw_A 231 VQE---QRGKSGIIYCNSRAKVEDTAARLQ 257 (523)
T ss_dssp HHH---TTTCCEEEECSSHHHHHHHHHHHH
T ss_pred HHh---cCCCcEEEEeCCHHHHHHHHHHHH
Confidence 433 234589999999999888888773
No 115
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=27.65 E-value=42 Score=37.19 Aligned_cols=60 Identities=17% Similarity=0.280 Sum_probs=36.5
Q ss_pred EEEEEEcCCCcceEeeccc----hhhhhhhcCCCCCCCCccchhhhhhhhccc---cc-ccCcceeeeeHHHHHHHHHh
Q psy1221 83 IYEAVLKDQAVGSVAGGGR----YDNLVGMFDPKNKTTPCVAAKLLHEVQGLL---ET-SCRSCREDIGVERLFSIIEN 153 (690)
Q Consensus 83 vFe~~~~~~~~~~i~~GGR----YD~L~~~f~~~~~~~~~~g~~~~~~~~~~~---~~-~~~~~g~~~~~~~l~~~~~~ 153 (690)
-|+++..+ ..|++|+. |+.|.++|...+.+ |. .....+ +- .++..||+||+|||+.++-.
T Consensus 462 rFDL~i~G---~Ei~nG~~rl~Dp~~~~~R~~~~G~d-~~-------~~e~yl~al~yG~PPhgG~GlGiDRLvMlltg 529 (548)
T 3i7f_A 462 SYDVFVRG---QEITSGAQRIHDPEFLMKRCIEKGVD-PA-------TLKDYIESFRFGSWPHAGCGIGLERITMLYLG 529 (548)
T ss_dssp EEEEEETT---EEEEEEEEECCCHHHHHHHHHHTTCC-GG-------GGHHHHHTTSSCCCCEEEEEEEHHHHHHHHTT
T ss_pred EEEEEECC---EEEeeCeeecCCHHHHHHHHHHcCCC-hH-------HHHHHHHHHhCCCCCceEEEEcHHHHHHHHhC
Confidence 69999976 47888864 77887777432111 11 011111 11 12344799999999988765
No 116
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=27.62 E-value=1e+02 Score=33.48 Aligned_cols=22 Identities=14% Similarity=0.052 Sum_probs=18.2
Q ss_pred cCCeEEEEcCccchHHHHHhhc
Q psy1221 378 VPKGMVCFFPSYDYEAIVYNYM 399 (690)
Q Consensus 378 ~pgg~lvFFpSY~~l~~v~~~~ 399 (690)
.++.+|||+++-...+.+...+
T Consensus 356 ~~~~~LVF~~s~~~a~~l~~~L 377 (508)
T 3fho_A 356 TIGQSIIFCKKKDTAEEIARRM 377 (508)
T ss_dssp -CCCEEEBCSSTTTTTHHHHHH
T ss_pred CCCcEEEEECCHHHHHHHHHHH
Confidence 4578999999999988888766
No 117
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=26.40 E-value=1.4e+02 Score=30.87 Aligned_cols=21 Identities=5% Similarity=0.094 Sum_probs=17.8
Q ss_pred CCeEEEEcCccchHHHHHhhc
Q psy1221 379 PKGMVCFFPSYDYEAIVYNYM 399 (690)
Q Consensus 379 pgg~lvFFpSY~~l~~v~~~~ 399 (690)
.+.+|||++|-...+.+++.+
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L 296 (417)
T 2i4i_A 276 DSLTLVFVETKKGADSLEDFL 296 (417)
T ss_dssp TCEEEEECSSHHHHHHHHHHH
T ss_pred CCeEEEEECCHHHHHHHHHHH
Confidence 467999999999888888766
No 118
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=25.17 E-value=1.9e+02 Score=31.85 Aligned_cols=33 Identities=9% Similarity=0.167 Sum_probs=22.7
Q ss_pred HHHHHHHHHh--ccCCeEEEEcCccchHHHHHhhc
Q psy1221 367 IAMTITNLCT--IVPKGMVCFFPSYDYEAIVYNYM 399 (690)
Q Consensus 367 l~~~i~~~~~--~~pgg~lvFFpSY~~l~~v~~~~ 399 (690)
+.+.|.+... ..++.+|||++|....+.++..+
T Consensus 274 ~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L 308 (579)
T 3sqw_A 274 AVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSIL 308 (579)
T ss_dssp HHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHH
Confidence 3344444333 34568999999999888888765
No 119
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=22.97 E-value=1.6e+02 Score=29.42 Aligned_cols=29 Identities=7% Similarity=-0.078 Sum_probs=22.4
Q ss_pred HHHHHhccCCeEEEEcCccchHHHHHhhc
Q psy1221 371 ITNLCTIVPKGMVCFFPSYDYEAIVYNYM 399 (690)
Q Consensus 371 i~~~~~~~pgg~lvFFpSY~~l~~v~~~~ 399 (690)
+.++.+..++.+|||++|....+.+++.+
T Consensus 230 l~~~l~~~~~~~lvf~~~~~~~~~l~~~L 258 (367)
T 1hv8_A 230 LCRLLKNKEFYGLVFCKTKRDTKELASML 258 (367)
T ss_dssp HHHHHCSTTCCEEEECSSHHHHHHHHHHH
T ss_pred HHHHHhcCCCcEEEEECCHHHHHHHHHHH
Confidence 34444566778999999999988888766
No 120
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=22.81 E-value=2.6e+02 Score=30.26 Aligned_cols=33 Identities=9% Similarity=0.167 Sum_probs=22.7
Q ss_pred HHHHHHHHHh--ccCCeEEEEcCccchHHHHHhhc
Q psy1221 367 IAMTITNLCT--IVPKGMVCFFPSYDYEAIVYNYM 399 (690)
Q Consensus 367 l~~~i~~~~~--~~pgg~lvFFpSY~~l~~v~~~~ 399 (690)
+...|..... ...+.+|||++|....+.+...+
T Consensus 325 ~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L 359 (563)
T 3i5x_A 325 AVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSIL 359 (563)
T ss_dssp HHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHH
Confidence 3344444333 34568999999999888887765
No 121
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=22.71 E-value=1.6e+02 Score=30.22 Aligned_cols=22 Identities=9% Similarity=0.073 Sum_probs=18.6
Q ss_pred cCCeEEEEcCccchHHHHHhhc
Q psy1221 378 VPKGMVCFFPSYDYEAIVYNYM 399 (690)
Q Consensus 378 ~pgg~lvFFpSY~~l~~v~~~~ 399 (690)
-.+.+|||++|....+.+++.+
T Consensus 257 ~~~~~lVf~~~~~~~~~l~~~L 278 (400)
T 1s2m_A 257 QINQAIIFCNSTNRVELLAKKI 278 (400)
T ss_dssp CCSEEEEECSSHHHHHHHHHHH
T ss_pred CCCcEEEEEecHHHHHHHHHHH
Confidence 4578999999999988888866
No 122
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=22.45 E-value=1.2e+02 Score=33.43 Aligned_cols=77 Identities=8% Similarity=0.021 Sum_probs=50.9
Q ss_pred eeeeeHHHHHHHHHhhhh-ccCC--cccCCceeEEEEeCCc----------cchHHHHhHhhhhhcCCc-ccCCccc-cc
Q psy1221 139 REDIGVERLFSIIENRNA-EQGV--KVKTTSTQVYVASAQK----------NLVEPRMQLCHELWGGEK-TQEKPKL-SG 203 (690)
Q Consensus 139 g~~~~~~~l~~~~~~~~~-~~~~--~~~~~~~~v~v~~~~~----------~~~~~~~~l~~~L~~~~i-~~~~~~~-~~ 203 (690)
+|+++ +|++.+|.+... ..+. ..+..+.+|+|++.+. ...+.+.+|++.|+..++ +..+... .+
T Consensus 279 ~~Gi~-~R~l~aliE~~~d~~gl~~P~~laP~qV~Iipi~~~~~~~~~~~e~~~~~a~~l~~~L~~~Girv~~Ddr~~~s 357 (519)
T 4hvc_A 279 SWGLT-TRTIGVMTMVHGDNMGLVLPPRVACVQVVIIPCGITNALSEEDKEALIAKCNDYRRRLLSVNIRVRADLRDNYS 357 (519)
T ss_dssp EEEEE-THHHHHHHHHHCBTTBCCCCTTTCSCSEEEEECCC---CCHHHHHHHHHHHHHHHHHHHHTTCCEEECCCSSSC
T ss_pred cccHH-HHHHHHHHHHhCccccccccccCCCeEEEEEEecCcccccchhhHHHHHHHHHHHHHHHHCCCEEEEECCCCCC
Confidence 36667 999988765321 1121 2234678999999873 345677889999998644 4445444 47
Q ss_pred HHHHHhhhhhcCC
Q psy1221 204 LQSFLKGVQENNP 216 (690)
Q Consensus 204 Lk~~lk~~~kl~~ 216 (690)
+...++.++..+.
T Consensus 358 ~G~K~~~ael~Gi 370 (519)
T 4hvc_A 358 PGWKFNHWELKGV 370 (519)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCC
Confidence 8888888877664
No 123
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=22.26 E-value=83 Score=34.30 Aligned_cols=66 Identities=12% Similarity=0.181 Sum_probs=36.1
Q ss_pred eeEEEEEEcCCCcceEeecc----chhhhhhhcCCCCCCC--Cccchhhhhhhhccccc-ccCcceeeeeHHHHHHHHHh
Q psy1221 81 GVIYEAVLKDQAVGSVAGGG----RYDNLVGMFDPKNKTT--PCVAAKLLHEVQGLLET-SCRSCREDIGVERLFSIIEN 153 (690)
Q Consensus 81 G~vFe~~~~~~~~~~i~~GG----RYD~L~~~f~~~~~~~--~~~g~~~~~~~~~~~~~-~~~~~g~~~~~~~l~~~~~~ 153 (690)
.--|+++.++ ..|++|. +|+.+.++|...+.+. +... ..+.- ++- .++-.||+||+|||+.++-.
T Consensus 397 ~~~fDL~~~G---~Ei~~G~~rl~d~~~q~~r~~~~g~~~~~~~~~-~yl~a----l~yG~PPhgG~glGiDRLvmll~g 468 (487)
T 1eov_A 397 SNSYDFFMRG---EEILSGAQRIHDHALLQERMKAHGLSPEDPGLK-DYCDG----FSYGCPPHAGGGIGLERVVMFYLD 468 (487)
T ss_dssp BSEEEEEETT---EEEEEEEEBCCCHHHHHHHHHHTTCCTTSTTTH-HHHHH----HTTCCCCEEEEEEEHHHHHHHHTT
T ss_pred EEEEEEEeCC---EEEEeeEEecCCHHHHHHHHHHcCCChhhhhHH-HHHHH----HhcCCCCCeEEEEhHHHHHHHHcC
Confidence 4579999976 3677775 4666666663211000 0000 00000 110 13445799999999998876
Q ss_pred h
Q psy1221 154 R 154 (690)
Q Consensus 154 ~ 154 (690)
.
T Consensus 469 ~ 469 (487)
T 1eov_A 469 L 469 (487)
T ss_dssp C
T ss_pred C
Confidence 3
No 124
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=22.02 E-value=2.4e+02 Score=29.61 Aligned_cols=27 Identities=7% Similarity=0.251 Sum_probs=20.3
Q ss_pred HHHhccCCeEEEEcCccchHHHHHhhc
Q psy1221 373 NLCTIVPKGMVCFFPSYDYEAIVYNYM 399 (690)
Q Consensus 373 ~~~~~~pgg~lvFFpSY~~l~~v~~~~ 399 (690)
++....++++|||+++-...+.+.+.+
T Consensus 294 ~~l~~~~~~~lVF~~t~~~a~~l~~~L 320 (434)
T 2db3_A 294 EILSEQADGTIVFVETKRGADFLASFL 320 (434)
T ss_dssp HHHHHCCTTEEEECSSHHHHHHHHHHH
T ss_pred HHHHhCCCCEEEEEeCcHHHHHHHHHH
Confidence 333444566999999999888888766
No 125
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=20.59 E-value=1.2e+02 Score=31.09 Aligned_cols=22 Identities=14% Similarity=0.025 Sum_probs=18.5
Q ss_pred cCCeEEEEcCccchHHHHHhhc
Q psy1221 378 VPKGMVCFFPSYDYEAIVYNYM 399 (690)
Q Consensus 378 ~pgg~lvFFpSY~~l~~v~~~~ 399 (690)
..+.+|||+++-...+.+++.+
T Consensus 279 ~~~~~lvf~~~~~~~~~l~~~l 300 (414)
T 3eiq_A 279 TITQAVIFINTRRKVDWLTEKM 300 (414)
T ss_dssp CCSSCEEECSCHHHHHHHHHHH
T ss_pred CCCcEEEEeCCHHHHHHHHHHH
Confidence 4468999999999988888766
No 126
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=20.51 E-value=1e+02 Score=33.15 Aligned_cols=65 Identities=18% Similarity=0.198 Sum_probs=37.7
Q ss_pred eEEEEEEcCCCcceEeecc----chhhhhhhcCCCCCCCCccchhhhhhhhccccc-ccCcceeeeeHHHHHHHHHhh
Q psy1221 82 VIYEAVLKDQAVGSVAGGG----RYDNLVGMFDPKNKTTPCVAAKLLHEVQGLLET-SCRSCREDIGVERLFSIIENR 154 (690)
Q Consensus 82 ~vFe~~~~~~~~~~i~~GG----RYD~L~~~f~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~g~~~~~~~l~~~~~~~ 154 (690)
--|+.+.++ ..|++|+ +|+.+.++|...+.+ |.. ...---.++- .++.-||+||+|||+.++-..
T Consensus 351 ~rfdL~~~G---~Ei~nG~~el~d~~~l~~r~~~~g~~-~~~----~~~yl~a~~~G~pP~~G~GlGidRLvm~l~g~ 420 (438)
T 3nem_A 351 RAFDLEYRG---VEISSGGQREHRHDILVEQIKEKGLN-PES----FEFYLKAFRYGMPPHGGFGLGAERLIKQMLDL 420 (438)
T ss_dssp SEEEEEETT---EEEEEEEEBCCCHHHHHHHHHHTTCC-GGG----GHHHHHTTSSCCCCEEEEEEEHHHHHHHHTTC
T ss_pred EEEEEEECC---EEEEeCeeecCCHHHHHHHHHHcCCC-hhH----HHHHHHHHHcCCCCceEEEEhHHHHHHHHhCC
Confidence 489999977 4788776 478888777532111 100 0000000111 134457999999999887653
No 127
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=20.48 E-value=1.8e+02 Score=29.86 Aligned_cols=22 Identities=14% Similarity=-0.007 Sum_probs=18.5
Q ss_pred cCCeEEEEcCccchHHHHHhhc
Q psy1221 378 VPKGMVCFFPSYDYEAIVYNYM 399 (690)
Q Consensus 378 ~pgg~lvFFpSY~~l~~v~~~~ 399 (690)
..+.+|||++|....+.+.+.+
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L 296 (410)
T 2j0s_A 275 TITQAVIFCNTKRKVDWLTEKM 296 (410)
T ss_dssp TSSEEEEECSSHHHHHHHHHHH
T ss_pred CCCcEEEEEcCHHHHHHHHHHH
Confidence 4578999999999988887766
Done!