RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1221
(690 letters)
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase,
ligase, structural G medical structural genomics of
pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi}
PDB: 3hrk_A* 3hri_A
Length = 456
Score = 171 bits (435), Expect = 7e-47
Identities = 37/188 (19%), Positives = 68/188 (36%), Gaps = 32/188 (17%)
Query: 3 GEKNLSPEVADKIGEYVLKHGHVDLVENLLADEFLAKSKQAKEGLEAIKLLFHYCQIYGL 62
L P V D I + DE + + E ++ ++ F + YG
Sbjct: 230 AVLGLEPTVVDAITTTLSLKS---------IDEIAQRVGEEHEAVKELRQFFEQVEAYGY 280
Query: 63 KDTIVFDLSLARGLDYYTGVIYEAVLKDQAVGSVAGGGRYDNLVGMFDPKNKTTPCVAAK 122
D ++FD S+ RGL YYTG+++E ++ ++ GGGRYDNL+ + PC
Sbjct: 281 GDWVLFDASVVRGLAYYTGIVFEGFDREGKFRALCGGGRYDNLLTTYGSPTP-IPCA--- 336
Query: 123 LLHEVQGLLETSCRSCREDIGVERLFSIIENRNAEQGVKVKTTSTQVYVASAQKNLVEPR 182
G G + +++ + + V +++
Sbjct: 337 ------GF---G-------FGDCVIVELLQEKRLLPDIP---HVVDDVVIPFDESMRPHA 377
Query: 183 MQLCHELW 190
+ + L
Sbjct: 378 LAVLRRLR 385
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase,
structural genomics, PSI- nostoc, protein structure
initiative; 2.70A {Nostoc SP}
Length = 465
Score = 161 bits (409), Expect = 3e-43
Identities = 55/191 (28%), Positives = 89/191 (46%), Gaps = 27/191 (14%)
Query: 4 EKNLSPEVADKIGEYVLKHGHVDLVENLLA--DEFLAKSKQAKEGLEAIKLLFHYCQIYG 61
++ ++PE KI ++V G VD V + L + L +S+Q G+ ++ + + G
Sbjct: 228 KEGINPEQTQKIIDFVKIDGSVDDVLDKLKHLSQTLPESEQFNLGVSELETVITGVRNLG 287
Query: 62 LKD-TIVFDLSLARGLDYYTGVIYEAVLKDQ-AVGSVAGGGRYDNLVGMFDPKNKTTPCV 119
+ D DL++ARGL+YYTG +YE L A+GS+ GGRY+ LVG F + P V
Sbjct: 288 VPDKRFCIDLAIARGLNYYTGTVYETTLIGHEALGSICSGGRYEELVGTF--IGEKMPGV 345
Query: 120 AAKLLHEVQGLLETSCRSCREDIGVERLFSIIENRNAEQGVKVKTTSTQVYVASAQKNLV 179
G+ IG+ RL S + + T QV V + Q L+
Sbjct: 346 ---------GI----------SIGLTRLISRLLKAGILN--TLPPTPAQVVVVNMQDELM 384
Query: 180 EPRMQLCHELW 190
+++ +L
Sbjct: 385 PTYLKVSQQLR 395
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase,
nucleotide excision repair,; 2.20A {Thermoplasma
acidophilum} PDB: 2vsf_A*
Length = 620
Score = 142 bits (360), Expect = 7e-36
Identities = 48/283 (16%), Positives = 97/283 (34%), Gaps = 47/283 (16%)
Query: 397 NYMPDIEKTQEKPKLSGLQSFLKGVQENNPNLSKPSEGGIEEAPSQVQEDQVRNPMLSVV 456
YM + K E+ ++ L ++L E +E +V + SV
Sbjct: 287 EYMRIMNKRSER-EIRSLLNYLYLFGEY-----------VENEKEKVGKVPFSY-CSSVA 333
Query: 457 TFLESLVNKNEDGRILVTKNPELSKSHIKYILLNPANHFTDIVQDARSIIVAGGTMEPVS 516
+ + + +++E+ + + +++ L+P+ + I GT++P
Sbjct: 334 SRIIAFSDQDEEKYAAILSPED--GGYMQAACLDPSGILEVLK--ESKTIHMSGTLDPFD 389
Query: 517 EFKDQLFGSLGVPESRIHHFSCGHVIPKENILPLILCSGPTNRKFDLTFENRTKGDTLKE 576
+ D I G + P EN ++ + L
Sbjct: 390 FYSDITGF-------EIPFKKIGEIFPPENRYIAYY------DGVSSKYDTLDE-KELDR 435
Query: 577 IAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKTSE 636
+A I ++ V K + +FPSY V N + H E E
Sbjct: 436 MATVIEDIILKVKKNTIVYFPSYSLMDRVENRVSFEHMKE------------YRGIDQKE 483
Query: 637 VDKVLSDYGTSVEKGGALMLSVIGGKLSEGLNFSDDLGRCVVV 679
+ +L + + + +V GG+LSEG+NF + +++
Sbjct: 484 LYSMLKKF----RRDHGTIFAVSGGRLSEGINFPGNELEMIIL 522
Score = 98.2 bits (245), Expect = 2e-21
Identities = 37/228 (16%), Positives = 77/228 (33%), Gaps = 33/228 (14%)
Query: 200 KLSGLQSFLKGVQENNPNLSKPPEGGIEEAPSQVQEDQVRNPMLSVVTFLESLVNKNEDG 259
++ L ++L E +E +V + SV + + + +++E+
Sbjct: 299 EIRSLLNYLYLFGEY-----------VENEKEKVGKVPFSY-CSSVASRIIAFSDQDEEK 346
Query: 260 RILVTKNPELSKSHIKYILLNPANHFTDIVQDARSIIVAGGTMEPVSEFKDQLFGSLGVP 319
+ + +++ L+P+ + I GT++P + D
Sbjct: 347 YAAILSPED--GGYMQAACLDPSGILEVLK--ESKTIHMSGTLDPFDFYSDITGF----- 397
Query: 320 ESRIHHFSCGHVIPKENILPLILCSGPTNRKFDLTFENRTKGDTLKEIAMTITNLCTIVP 379
I G + P EN ++ + L +A I ++ V
Sbjct: 398 --EIPFKKIGEIFPPENRYIAYY------DGVSSKYDTLDE-KELDRMATVIEDIILKVK 448
Query: 380 KGMVCFFPSYDYEAIVYNYMPDIEKTQEKPKLSG--LQSFLKGVQENN 425
K + +FPSY V N + E +E + L S LK + ++
Sbjct: 449 KNTIVYFPSYSLMDRVENRV-SFEHMKEYRGIDQKELYSMLKKFRRDH 495
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Length = 540
Score = 125 bits (315), Expect = 2e-30
Identities = 29/199 (14%), Positives = 64/199 (32%), Gaps = 42/199 (21%)
Query: 483 HIKYILLNPANHFTDIVQDARSIIVAGGTMEPVSEFKDQLFGSLGVPESRIHHFSCGHVI 542
+ + + D + ++ GT+ +
Sbjct: 300 SLVKVPSDVNQLIEDALNVKTFKVLMSGTLPESLTLTNSY-------------------- 339
Query: 543 PKENILPLILCSGPTNRKFDLTFENRTKGDTLKEIAMTITNLCTIVPKGMVCFFPSYDYE 602
+ ++ G ++T E R + + ++ + + K ++ FFPSY+
Sbjct: 340 --KIVVNESYGRGEYYYCPNVTSELRKRNSNIPIYSILLKRIYENSSKSVLVFFPSYEML 397
Query: 603 AIVYNYMRDNHFIERIARIAKKKVVFREPKKTSEVDKVLSDYGTSVEKGGALMLSVIGGK 662
V ++ I E K + ++VL + G L++ V+ K
Sbjct: 398 ESVRIHLSGIPVI--------------EENKKTRHEEVLELM----KTGKYLVMLVMRAK 439
Query: 663 LSEGLNFSDD--LGRCVVV 679
SEG+ F + L +V+
Sbjct: 440 ESEGVEFREKENLFESLVL 458
Score = 87.3 bits (216), Expect = 4e-18
Identities = 22/167 (13%), Positives = 54/167 (32%), Gaps = 28/167 (16%)
Query: 273 HIKYILLNPANHFTDIVQDARSIIVAGGTMEPVSEFKDQLFGSLGVPESRIHHFSCGHVI 332
+ + + D + ++ GT+ +
Sbjct: 300 SLVKVPSDVNQLIEDALNVKTFKVLMSGTLPESLTLTNSY-------------------- 339
Query: 333 PKENILPLILCSGPTNRKFDLTFENRTKGDTLKEIAMTITNLCTIVPKGMVCFFPSYDYE 392
+ ++ G ++T E R + + ++ + + K ++ FFPSY+
Sbjct: 340 --KIVVNESYGRGEYYYCPNVTSELRKRNSNIPIYSILLKRIYENSSKSVLVFFPSYEML 397
Query: 393 AIVYNYMPDIEKTQEKPKLSGLQSFLKGVQENNPNL-----SKPSEG 434
V ++ I E+ K + + L+ ++ + +K SEG
Sbjct: 398 ESVRIHLSGI-PVIEENKKTRHEEVLELMKTGKYLVMLVMRAKESEG 443
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, PSI-BIO; 2.30A
{Alicyclobacillus acidocaldarius subsp}
Length = 373
Score = 121 bits (305), Expect = 5e-30
Identities = 38/160 (23%), Positives = 60/160 (37%), Gaps = 29/160 (18%)
Query: 4 EKNLSPEVADKIGEYVLKHGHVDLVENLLAD-EFLAKSKQAKEGLEAIKLLFHYCQIYGL 62
L+ A++ + +E LL D + ++ + L GL
Sbjct: 237 ANLLTWSPAERDAAKRSREASDRELEALLRDAVDPRAAADVRDAWRYLCRLAEALHDSGL 296
Query: 63 -KDTIVFDLSLARGLDYYTGVIYEAVLKDQAVGSVAGGGRYDNLVGMFDPKNKTTPCV-- 119
D + FDL+L R LDYYTG+++E +A GGRYD L+ F P V
Sbjct: 297 ASDVVTFDLALHRELDYYTGLVFEMFAPGVG-APIAQGGRYDELLAQF---GAGAPAVGF 352
Query: 120 AAKLLHEVQGLLETSCRSCREDIGVERLFSIIENRNAEQG 159
A VER+ +++E + +G
Sbjct: 353 A---------------------FEVERVMAVLEAQEEGEG 371
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer
aging, hydrolase; HET: FLC; 2.00A {Sulfolobus
acidocaldarius} PDB: 3crw_1*
Length = 551
Score = 116 bits (292), Expect = 2e-27
Identities = 35/206 (16%), Positives = 66/206 (32%), Gaps = 30/206 (14%)
Query: 477 PELSKSHIKYILLNPANHFTDIVQDARSIIVAGGTMEPVSEFKDQLFGSLGVPESRIHHF 536
P + + + + + SII+ GT+ P + + + +
Sbjct: 290 PFSYSKRLVIKNPEISYYLNLLNDNELSIILMSGTLPPREYMEKVWGI-----KRNMLYL 344
Query: 537 SCGHVIPKENILPLILCSGPTNRKFDLTFENRTKGDTLKEIAMTITNLCTIVPKGMVCFF 596
I K G ++ R+ + K A + + ++ F
Sbjct: 345 DVEREIQKRVSGSYECYIGV---DVTSKYDMRSD-NMWKRYADYLLKIYFQAKANVLVVF 400
Query: 597 PSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKKTSEVDKVLSDYGTSVEKGGALML 656
PSY+ V + RI+ K V E ++ +S L+
Sbjct: 401 PSYEIMDRVMS------------RISLPKYVESEDSSVEDLYSAIS------ANNKVLIG 442
Query: 657 SVIGGKLSEGLNFSDD---LGRCVVV 679
SV GKL+EG+ ++ L VV+
Sbjct: 443 SVGKGKLAEGIELRNNDRSLISDVVI 468
Score = 81.2 bits (200), Expect = 4e-16
Identities = 27/174 (15%), Positives = 54/174 (31%), Gaps = 17/174 (9%)
Query: 267 PELSKSHIKYILLNPANHFTDIVQDARSIIVAGGTMEPVSEFKDQLFGSLGVPESRIHHF 326
P + + + + + SII+ GT+ P + + + +
Sbjct: 290 PFSYSKRLVIKNPEISYYLNLLNDNELSIILMSGTLPPREYMEKVWGI-----KRNMLYL 344
Query: 327 SCGHVIPKENILPLILCSGPTNRKFDLTFENRTKGDTLKEIAMTITNLCTIVPKGMVCFF 386
I K G ++ R+ + K A + + ++ F
Sbjct: 345 DVEREIQKRVSGSYECYIGV---DVTSKYDMRSD-NMWKRYADYLLKIYFQAKANVLVVF 400
Query: 387 PSYDYEAIVYNYMPDIEKTQEKPKLSGLQSFLKGVQENNPNL------SKPSEG 434
PSY+ V + + + K E S ++ + NN L K +EG
Sbjct: 401 PSYEIMDRVMSRI-SLPKYVESED-SSVEDLYSAISANNKVLIGSVGKGKLAEG 452
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A
{Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Length = 434
Score = 111 bits (279), Expect = 3e-26
Identities = 33/188 (17%), Positives = 68/188 (36%), Gaps = 38/188 (20%)
Query: 4 EKNLSPEVADKIGEYVLKHGHVDLVENLLADEFLAKSKQAKEGLEAIKLLFHYCQIYGLK 63
+ + I + +D + + + E + + + YG+K
Sbjct: 204 SAGIGEDGVSMIADLCSGTRGIDEMARITGK--------SSEEIARMAAVEDLLASYGVK 255
Query: 64 DTIVFDLSLARGLDYYTGVIYEAVLKDQAVGSVAGGGRYDNLVGMFDPKNKTTPCV--AA 121
+ + +D S+ RGL YYTG+++EA + ++ GGGRYDNL + ++ P V
Sbjct: 256 N-VRYDFSIVRGLSYYTGIVFEAYDRSGQFRAILGGGRYDNLASLMS--GESVPAVGFG- 311
Query: 122 KLLHEVQGLLETSCRSCREDIGVERLFSIIENRNAEQGVKVKTTSTQVYVASAQKNLVEP 181
+G + +++ + V++ VY+ K
Sbjct: 312 --------------------MGDAVISLLLK----RENVQIPREKKSVYICRVGKINSSI 347
Query: 182 RMQLCHEL 189
+ +L
Sbjct: 348 MNEYSRKL 355
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural
genomics, PSI-2, protein structure initiative; 1.97A
{Bacillus halodurans}
Length = 400
Score = 104 bits (261), Expect = 4e-24
Identities = 31/164 (18%), Positives = 56/164 (34%), Gaps = 30/164 (18%)
Query: 1 MVGEKNLSPEVADKIGEYVLKHGHVDLVENLLADEFLAKSKQAKEGLEAIKLLFHYCQIY 60
V NLS ++ + G +E L ++++ K L + L+ + Y
Sbjct: 203 HVKSLNLSTIDKSRLMNLLSLRGGRAAIEEARG---LIQTEKGKTALAEMTKLYEVLESY 259
Query: 61 GLKDTIVFDLSLARGLDYYTGVIYEAVLKDQAVGSVAGGGRYDNLVGMFDPKNKTTPCV- 119
G + + FDL+L + YYTGV++E + GGRYD L+ F +
Sbjct: 260 GASEYVKFDLTLVLHMSYYTGVVFEGYGNRLG-VPLCSGGRYDELLSKFH---RPAQATG 315
Query: 120 -AAKLLHEVQGLLETSCRSCREDIGVERLFSIIENRNAEQGVKV 162
+ ++ L + G +
Sbjct: 316 FG---------------------VRIDLLVEALNGEIISNGHEQ 338
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA
synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP:
d.104.1.1 PDB: 1usy_C*
Length = 275
Score = 84.7 bits (210), Expect = 2e-18
Identities = 21/106 (19%), Positives = 36/106 (33%), Gaps = 10/106 (9%)
Query: 1 MVGEKNLSPEVADKIGEYVLKHGHVDLVENLLADEFLAKSKQAKEGLEAIKLLFHYCQIY 60
+ K + +KI E + + E L E + + Q
Sbjct: 165 LSHMKKIDLSRVEKIIEDSIYRR---------SPEHLKTMDLPLSVREDLLSASSFLQEK 215
Query: 61 GLKDTIVFDLSLARGLDYYTGVIYEAVLKDQAVGSVAGGGRYDNLV 106
++ DL+LAR ++ Y G+I+ + VA GG Y
Sbjct: 216 FPTVSVEIDLTLARTIEEYCGLIFTIYDTSSS-RLVAAGGEYTVNG 260
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 88.2 bits (218), Expect = 5e-18
Identities = 112/635 (17%), Positives = 183/635 (28%), Gaps = 281/635 (44%)
Query: 19 VLKHGHVD---LV-ENL------LADEFLAKSKQAKEGLEA-------IKLL--F----- 54
L HG ++ LV L ++F + EG A +L+ F
Sbjct: 10 TLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVS 69
Query: 55 ---------HYCQIYGLKDTIV-F--------DL-SLARGLD----------------YY 79
+ Q+ L + F D+ +LA L Y
Sbjct: 70 SLVEPSKVGQFDQV--LNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYI 127
Query: 80 TGVI--------------YEAVLKDQA-VGSVAGG-G---RY-DNLVGMFDPKNKTTPCV 119
T I + AV + A + ++ GG G Y + L ++ T +
Sbjct: 128 TARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQ----TYHVL 183
Query: 120 AAKLLHEVQGLLETSCRSCREDIGVERLFSIIENRNAEQGVKVK-------TTSTQVYVA 172
L+ L R+ + E++F+ QG+ + T + Y+
Sbjct: 184 VGDLIKFSAETLSELIRT---TLDAEKVFT--------QGLNILEWLENPSNTPDKDYLL 232
Query: 173 SAQKNLVEPR---MQLCH-----ELWGGEKTQEKPKLSGL-------------------Q 205
S + P +QL H +L G + + L G +
Sbjct: 233 SIPISC--PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWE 290
Query: 206 SFLK------------GV--QENNPNLSKPP-------EGGIEEAPSQVQEDQVRNPMLS 244
SF GV E PN S PP E E PS PMLS
Sbjct: 291 SFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENN-EGVPS---------PMLS 340
Query: 245 VV----TFLESLVNKNEDGRILVTKNPEL-SKSHIKYI-LLNPANHFTDIVQDARSIIVA 298
+ ++ VNK N L + + I L+N A + +V+
Sbjct: 341 ISNLTQEQVQDYVNK---------TNSHLPAGKQV-EISLVNGAKNL----------VVS 380
Query: 299 GGTMEPVSEFKDQLFG---SL-------GVPESRIHHFSCGHVIPKENILPLILCSGPTN 348
G P S L+G +L G+ +SRI +
Sbjct: 381 G---PPQS-----LYGLNLTLRKAKAPSGLDQSRIPF---------------------SE 411
Query: 349 RK--FDLTFENRTKGDTLKEIAMTITNLCTIVPKGMVCFFPSY--DYEAIVYNYMPDIEK 404
RK F F L + P F ++ D+ K
Sbjct: 412 RKLKFSNRF--------L-----PVA-----SP-----FHSHLLVPASDLI---NKDLVK 445
Query: 405 TQEKPKLSGLQ----SFLKG--VQENNPNLSKPSEGGIEEAPSQVQ-EDQVRNPMLSVVT 457
+Q G ++ + ++S+ I P V+ E + ++
Sbjct: 446 NNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLP--VKWETTTQFKATHILD 503
Query: 458 F-------LESLVNKNEDGR----ILVT---KNPE 478
F L L ++N+DG I+ NP+
Sbjct: 504 FGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPD 538
Score = 68.9 bits (168), Expect = 4e-12
Identities = 119/657 (18%), Positives = 191/657 (29%), Gaps = 256/657 (38%)
Query: 150 IIENRNAEQGVKVKTTSTQVYVASAQ------KNLVEPRMQLCHELWGGEKTQEKPKLSG 203
+ + + E + V T + ++Q K L EP ++ +L
Sbjct: 10 TLSHGSLEHVLLV---PTASFFIASQLQEQFNKILPEPT----EGFAADDEPTTPAEL-- 60
Query: 204 LQSFLKGVQENNPNLSKPPEGGIEEAPSQVQEDQVRNPMLSVVTFLESLVNKNED----- 258
+ FL V E Q DQV + +T E+ + D
Sbjct: 61 VGKFLGYVSSL------------VEPSKVGQFDQV---LNLCLTEFENCYLEGNDIHALA 105
Query: 259 GRILVTKNPELSKSH--IK-YILLNPANHFTDI-------------VQDARSIIVA--GG 300
++L + L K+ IK YI A V + + +VA GG
Sbjct: 106 AKLLQENDTTLVKTKELIKNYIT---ARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG 162
Query: 301 ---TMEPVSEFKD------------------QLFGSLGVPESRIHHFSCG---------- 329
T + E +D L + F+ G
Sbjct: 163 QGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENP 222
Query: 330 HVIPKENIL-------PLI----LCSGPTNRKFDLTFENRTKGDTLKEIAMTITNLCTIV 378
P ++ L PLI L + +T + G T E+ + T
Sbjct: 223 SNTPDKDYLLSIPISCPLIGVIQLAH------YVVTA--KLLGFTPGELRSYLKGA-TGH 273
Query: 379 PKGMV---CFFPSYDYEAIVYNYMPDIEKTQEKPKLSGLQ-SFLKGV--QENNPNLSKPS 432
+G+V + +E+ + + F GV E PN S P
Sbjct: 274 SQGLVTAVAIAETDSWESFFVSV------------RKAITVLFFIGVRCYEAYPNTSLPP 321
Query: 433 -------EGGIEEAPSQVQEDQVRNPMLSVV----TFLESLVNKNEDGRILVTKNPEL-S 480
E E PS PMLS+ ++ VNK N L +
Sbjct: 322 SILEDSLENN-EGVPS---------PMLSISNLTQEQVQDYVNK---------TNSHLPA 362
Query: 481 KSHIKYI-LLNPANHFTDIVQDARSIIVAGGTMEPVSEFKDQLFG---SL-------GVP 529
+ I L+N A + +V+G P S L+G +L G+
Sbjct: 363 GKQV-EISLVNGAKNL----------VVSG---PPQS-----LYGLNLTLRKAKAPSGLD 403
Query: 530 ESRIHHFSCGHVIPKENILPL-------ILCSGPTNRKF--DLTFENRT-KGDTLKEIAM 579
+SRI FS + LP+ +L P + DL N + ++
Sbjct: 404 QSRI-PFSERKLKFSNRFLPVASPFHSHLL--VPASDLINKDLVKNNVSFNAKDIQ---- 456
Query: 580 TITNLCTIVPKGMVCFFPSYDYEAIVYNY-----MR--DNHFIERIARIAKKKVVFREP- 631
+P VY+ +R ERI + R P
Sbjct: 457 --------IP---------------VYDTFDGSDLRVLSGSISERIVD-----CIIRLPV 488
Query: 632 --KKTSEVD--KVLSDYGTSVEKG-GALMLS---------VIGGKLSEGLNFSDDLG 674
+ T++ +L D+G G G L ++ G L + DD G
Sbjct: 489 KWETTTQFKATHIL-DFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPD--DDYG 542
Score = 58.1 bits (140), Expect = 9e-09
Identities = 63/390 (16%), Positives = 119/390 (30%), Gaps = 126/390 (32%)
Query: 5 KNLSPEVADKIGEYVLKHGHVDLV------ENLLADEFLAKSKQAKEGLEAIKL--LFHY 56
L D E V G ++++ N ++L + I + L HY
Sbjct: 196 SELIRTTLDA--EKVFTQG-LNILEWLENPSNTPDKDYLLSIPIS---CPLIGVIQLAHY 249
Query: 57 ---CQIYGLKDTIVFDLSLARGLDYYTGVIYEAVLKDQAVGSVAGGGR--YDN----LVG 107
++ G + +G TG + ++ A+ + + + +
Sbjct: 250 VVTAKLLGFTPGELRSYL--KGA---TGHS-QGLVTAVAI-AETDSWESFFVSVRKAITV 302
Query: 108 MF---------DPKNKTTPCVAAKLLHEVQG----LLETSCRSCREDIGVERLFSIIENR 154
+F P P + L +G +L S ++ E++ +
Sbjct: 303 LFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPML-----SIS-NLTQEQVQDYVNKT 356
Query: 155 NAEQGVKVKTTSTQVYVA--SAQKNLV---EPR--MQLCHELWGGEK------------- 194
N+ QV ++ + KNLV P+ L L K
Sbjct: 357 NSHLP-----AGKQVEISLVNGAKNLVVSGPPQSLYGLNLTL---RKAKAPSGLDQSRIP 408
Query: 195 -TQEKPKLSGLQSFLK-GVQENNPNLSKPPEGGIEEAPSQVQEDQVRNPMLSVVTFL-ES 251
++ K K S FL ++ L A + +D V+N V+F +
Sbjct: 409 FSERKLKFS--NRFLPVASPFHSHLL--------VPASDLINKDLVKNN----VSFNAKD 454
Query: 252 L---VNKNEDGRILVTKNPELSKSHIKYILLNP----------ANHF------------- 285
+ V DG L + +S+ + I+ P A H
Sbjct: 455 IQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGV 514
Query: 286 -TDIVQDARSI-IVAGGTME--PVSE--FK 309
T +D + ++ GT++ P + FK
Sbjct: 515 LTHRNKDGTGVRVIVAGTLDINPDDDYGFK 544
Score = 51.2 bits (122), Expect = 1e-06
Identities = 47/235 (20%), Positives = 75/235 (31%), Gaps = 71/235 (30%)
Query: 5 KNLSPEVADKIGEYVLKH--GHVDLVEN----LLADEFLAKSKQAKEGLEAIKLLF--H- 55
+ + E+ + Y + G + + L E A +GL F H
Sbjct: 1704 EKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHS 1763
Query: 56 ---YC------QIYGLKDTI--VFDLSLARGLDYYTGVIYEAVLKDQAVGSVAGGGRYDN 104
Y + ++ + VF RG+ + AV +D+ G Y
Sbjct: 1764 LGEYAALASLADVMSIESLVEVVF----YRGM-----TMQVAVPRDEL-----GRSNY-- 1807
Query: 105 LVGMF--DPKNKTTPCVAAKLLHEVQGLLETSCRSCREDIG--VERLFSIIENRNAEQGV 160
GM +P VAA E L+ + G VE I N N E
Sbjct: 1808 --GMIAINPGR-----VAASFSQEA---LQYVVERVGKRTGWLVE-----IVNYNVE--- 1849
Query: 161 KVKTTSTQVYVASAQKNLVEPRMQLCHELWGGEKTQEKPKLSGLQ-SF-LKGVQE 213
Q YVA+ ++ + + + K Q K + LQ S L+ V+
Sbjct: 1850 ------NQQYVAAGDLRALDTVTNVLNFI----KLQ-KIDIIELQKSLSLEEVEG 1893
Score = 41.2 bits (96), Expect = 0.001
Identities = 42/262 (16%), Positives = 82/262 (31%), Gaps = 100/262 (38%)
Query: 446 DQVR-NPMLSVVTF------------LESLVNKNEDGRILVTK-NPELSKSHIKYILLNP 491
D V NP+ + F + DG++ K E+++ Y +
Sbjct: 1663 DIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSE 1722
Query: 492 AN--HFTDIVQDARSIIVAGGTMEPVSEFK----------DQLF-G-SLGVPESRIHHFS 537
T Q A + ME + F+ D F G SLG E ++
Sbjct: 1723 KGLLSATQFTQPA---LT---LME-KAAFEDLKSKGLIPADATFAGHSLG--E-----YA 1768
Query: 538 ----CGHVIPKENILPLILCSGPTNRKFDLTFENRTKGDTLK------EIAMTITNLCTI 587
V+ E+++ ++ F R G T++ E+ + + I
Sbjct: 1769 ALASLADVMSIESLV-------------EVVFY-R--GMTMQVAVPRDELGRSNYGMIAI 1812
Query: 588 VPKGMVCFFPSYDYEAIV---------------YN-----Y-----MRDNHFIERIARIA 622
P + F + +V YN Y +R ++ + +
Sbjct: 1813 NPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRA---LDTVTNVL 1869
Query: 623 K----KKVVFREPKKTSEVDKV 640
+K+ E +K+ +++V
Sbjct: 1870 NFIKLQKIDIIELQKSLSLEEV 1891
Score = 39.3 bits (91), Expect = 0.005
Identities = 34/221 (15%), Positives = 66/221 (29%), Gaps = 79/221 (35%)
Query: 370 TITNLCTIVPKGMVCFFPSY-------DYEAIVYNYMPDIEKTQEKPKLSGLQSFLKGVQ 422
+I ++ P + F +Y A+++ + D K + + +
Sbjct: 1660 SILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVD-GKLKTEKIFKEINEHSTSYT 1718
Query: 423 ENNPN--LSK-----P--------------SEGGIE-----------E-----APSQVQ- 444
+ LS P S+G I E + + V
Sbjct: 1719 FRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMS 1778
Query: 445 -EDQVRNPMLSVV----TFLESLVNKNEDGRI---LVTKNPE-----LSKSHIKYI---- 487
E V VV ++ V ++E GR ++ NP S+ ++Y+
Sbjct: 1779 IESLVE-----VVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERV 1833
Query: 488 ------LLNPANHFTDIVQDARSIIVAGGTMEPVSEFKDQL 522
L+ N+ + Q VA G + + + L
Sbjct: 1834 GKRTGWLVEIVNYNVENQQ-----YVAAGDLRALDTVTNVL 1869
Score = 38.5 bits (89), Expect = 0.008
Identities = 54/314 (17%), Positives = 92/314 (29%), Gaps = 114/314 (36%)
Query: 35 EFLAKSKQAKEGLEAIKLLFHYCQIYG--LKDTIVFD--LSLARGLDYYTGVIYEAVLKD 90
+ SK A++ H+ YG + D IV + ++L I+ K
Sbjct: 1634 DLYKTSKAAQDVWNRAD--NHFKDTYGFSILD-IVINNPVNLT---------IHFGGEKG 1681
Query: 91 QAVGSVAGGGRYDNLVGMFDPKNKTTPCVAAKLLHEVQGLLETSCRSCREDIGVERLFSI 150
+ + +N M K+ E+ E S
Sbjct: 1682 KRI--------RENYSAMIFETIVDGKLKTEKIFKEIN----------------EHSTSY 1717
Query: 151 IENRNAEQGVKVKTTSTQV--YVAS-AQ------KNLVEPRMQLC-HELWGGEKTQEKPK 200
+E+G+ T TQ + A K L+ H L GE
Sbjct: 1718 TFR--SEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSL--GE------- 1766
Query: 201 LSGLQSFLKGVQENNPNLSKPPEGGIEEAPSQVQEDQVRNPMLSVV----TFLESLVNKN 256
+ L S L V +S IE + VV ++ V ++
Sbjct: 1767 YAALAS-LADV------MS------IESL-------------VEVVFYRGMTMQVAVPRD 1800
Query: 257 EDGRI---LVTKNPE-----LSKSHIKYI----------LLNPANHFTDIVQDARSIIVA 298
E GR ++ NP S+ ++Y+ L+ N+ + Q VA
Sbjct: 1801 ELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQ-----YVA 1855
Query: 299 GGTMEPVSEFKDQL 312
G + + + L
Sbjct: 1856 AGDLRALDTVTNVL 1869
Score = 32.7 bits (74), Expect = 0.52
Identities = 30/158 (18%), Positives = 47/158 (29%), Gaps = 49/158 (31%)
Query: 580 TITNLCTIVPKGMVCFFPSY-------DYEAIVYNYMRDNHFI-ERIARIAK---KKVVF 628
+I ++ P + F +Y A+++ + D E+I + F
Sbjct: 1660 SILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTF 1719
Query: 629 REPK----KTS---------EVD--KVLSDYGTSVEK----G---G---AL-----MLSV 658
R K T E + L G G G AL ++S+
Sbjct: 1720 RSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSI 1779
Query: 659 --------IGGKLSEGLNFSDDLGRCVVVMCNSNPLRV 688
G + D+LGR M NP RV
Sbjct: 1780 ESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRV 1817
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT,
histidine biosynthesis, hiszg, alloste evolution; 2.90A
{Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Length = 344
Score = 77.7 bits (192), Expect = 1e-15
Identities = 22/136 (16%), Positives = 48/136 (35%), Gaps = 27/136 (19%)
Query: 25 VDLVENLLADEFLAKSKQAKEGLEAIKLLFHYCQIYGLKDTIVFDLSLARGLDYYTGVIY 84
+ + L E L + + + + L + + + I+ DL + +DYYT +++
Sbjct: 231 IFITNELSRLENLVTNTKDDVLISSFDQLKEFSEKLSMIKPIIIDLGMVPKMDYYTDLMF 290
Query: 85 EAVLKDQAVGSVAGGGRYDNLVGMFDPKNKTTPCV--AAKLLHEVQGLLETSCRSCREDI 142
+A A + GGRYD L+ F + +
Sbjct: 291 KAYSSA-ANQPILSGGRYDQLLSNFQEE---AFAIGFC---------------------C 325
Query: 143 GVERLFSIIENRNAEQ 158
++ + +E + E+
Sbjct: 326 HMDTILKALERQELEE 341
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 70.3 bits (171), Expect = 2e-12
Identities = 99/698 (14%), Positives = 186/698 (26%), Gaps = 237/698 (33%)
Query: 51 KLLFHYCQIYGLKDTIVFDLSLARGLDYYTGVIYEAVLKD-QAVGSVAGGGRY------- 102
+L + +D V + D ++ + + G
Sbjct: 20 DILSVF------EDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS 73
Query: 103 --DNLVGMF--DPKNKTTPCVAAKLLHEVQG--LLETSCRSCREDI----------GVER 146
+ +V F + + + + E + ++ R+ + V R
Sbjct: 74 KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR 133
Query: 147 LFSIIENRNA------EQGVKV-------KTTSTQVYVASAQKNL-VEPRMQLCHELW-- 190
L ++ R A + V + KT + V+ +M W
Sbjct: 134 LQPYLKLRQALLELRPAKNVLIDGVLGSGKT----WVALDVCLSYKVQCKMD-FKIFWLN 188
Query: 191 GGEKTQEKPKLSGLQSFLKGVQEN---NPNLSKPPEGGIEEAPSQVQE------------ 235
+ L LQ L + N + S + I ++++
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248
Query: 236 --DQVRNPMLSVV-TFLESLVNKNEDG--RILV-TKNPE----LSKSHIKYILLNPANH- 284
V+N F + +IL+ T+ + LS + +I L+ +
Sbjct: 249 VLLNVQNA--KAWNAF---------NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 285 FTDIVQDARSIIVAGGTMEPVSEFKDQLFGSLGVPESRIHHFSCGHVIPKE--NILPLIL 342
T E K L L +P+E P L
Sbjct: 298 LTP------------------DEVKSLLLKYLDCRPQD---------LPREVLTTNPRRL 330
Query: 343 CS-GPTNRKFDLTFEN--RTKGDTLKE-IAMTITNLCTIVPKGMVCFFPSYDYEAIVYNY 398
+ R T++N D L I ++ L + M +D ++
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM------FDRLSV---- 380
Query: 399 MPDIEKTQEKPKLSGLQSFLKGVQENNPNLSKPSEGGIEEAPSQV-----QEDQVRNPML 453
F I P+ + + + M+
Sbjct: 381 ------------------FPPSAH-------------I---PTILLSLIWFDVIKSDVMV 406
Query: 454 SVVTFLESLVNKNEDGRILVTKNPELSKSHIKYILLNPANHFTDIVQDARSII------- 506
+ L + LV K P+ S I I L + RSI+
Sbjct: 407 ----VVNKLHKYS-----LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK 457
Query: 507 -VAGGTMEPVSEFKDQLFGS-LGVPESRIHHFSCGHVIPKENILPLILCSGPTNRKFDLT 564
+ P DQ F S +G HH + + ++ D
Sbjct: 458 TFDSDDLIPPYL--DQYFYSHIG------HHLKNIEHPERMTLFRMVF--------LDFR 501
Query: 565 F-ENRTKGDTLKEIAM-TITNLCTIVPKGMVCFFPSY------DYEAIVYNYMRDNHFIE 616
F E + + D+ A +I N + F+ Y YE +V + F+
Sbjct: 502 FLEQKIRHDSTAWNASGSILNTLQQLK-----FYKPYICDNDPKYERLVNAIL---DFLP 553
Query: 617 R------------IARIA---KKKVVFREPKKTSEVDK 639
+ + RIA + + +F E K +V +
Sbjct: 554 KIEENLICSKYTDLLRIALMAEDEAIFEEAHK--QVQR 589
Score = 63.7 bits (154), Expect = 2e-10
Identities = 86/524 (16%), Positives = 149/524 (28%), Gaps = 164/524 (31%)
Query: 5 KNLSPEVADKIGEYVLKHG------HVDLVENLLADE----------F---LAKSKQAKE 45
L P + VL G + ++ F L +
Sbjct: 145 LELRPA------KNVLIDGVLGSGKTW-VALDVCLSYKVQCKMDFKIFWLNLKNCNSPET 197
Query: 46 GLEAIKLLFH-----YCQ--------IYGLKDTIVFDLSLARGLDYYTGVIYEAVLKDQA 92
LE ++ L + + + L + Y ++ VL +
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL---VLLN-- 252
Query: 93 VGSVAGGGRYDNLVGMFDPKNK---TT--PCVAAKLL----------HEVQGLLETSCRS 137
V + F+ K TT V L H L
Sbjct: 253 ---V----QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP----- 300
Query: 138 CREDIGVERLFS-IIENRNAEQGVKVKTTSTQVYVASAQKNLVEPRMQLCHELWGGEKTQ 196
E V+ L ++ R + +V TT+ + +++ ++ W K
Sbjct: 301 -DE---VKSLLLKYLDCRPQDLPREVLTTNPRRL------SIIAESIRDGLATWDNWKHV 350
Query: 197 EKPKLSG-LQSFLKGVQENNPNLSKP--------PEG-GIEEAPSQV-----QEDQVRNP 241
KL+ ++S L V E P + P I P+ + + +
Sbjct: 351 NCDKLTTIIESSLN-VLE--PAEYRKMFDRLSVFPPSAHI---PTILLSLIWFDVIKSDV 404
Query: 242 MLSVVTFLESLVNKNEDGRILVTKNPELSKSHIKYILLNPANHFTDIVQDARSII----- 296
M+ + L + LV K P+ S I I L + RSI+
Sbjct: 405 MV----VVNKLHKYS-----LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455
Query: 297 ---VAGGTMEPVSEFKDQLFGS-LGVPESRIHHFSCGHVIPKENILPLILCSGPTNRKFD 352
+ P DQ F S +G HH + + ++ D
Sbjct: 456 PKTFDSDDLIPPYL--DQYFYSHIG------HHLKNIEHPERMTLFRMVF--------LD 499
Query: 353 LTF-ENRTKGDTLKEIAM-TITNLCTIVPKGMVCFFPSYDYEAIVYNYMPDIEKTQEKPK 410
F E + + D+ A +I N + Y+ Y+ D + E+
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNTLQQLKF----------YK----PYICDNDPKYER-L 544
Query: 411 LSGLQSFLKGVQEN---NPN-------LSKPSEGGIEEAPSQVQ 444
++ + FL ++EN + L E EEA QVQ
Sbjct: 545 VNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQ 588
Score = 55.2 bits (132), Expect = 5e-08
Identities = 82/622 (13%), Positives = 180/622 (28%), Gaps = 193/622 (31%)
Query: 14 KIGEYVLKHGHVDLVENLLADEFLAKSKQAKEGLEAIKLLF---HYCQIYGLKDTI---- 66
+ GE ++ + D++ D F+ + K+ + K + I KD +
Sbjct: 10 ETGE--HQYQYKDILSVFE-DAFV-DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65
Query: 67 -VFDLSLARGLDYYTGVIYEAVLKDQAVGSVAGGGRYDNLVGMFDPKNKTTPCVAAKLLH 125
+F L++ + + E + + Y L+ + + P + ++
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRIN-----------YKFLMSPIKTEQRQ-PSMMTRMYI 113
Query: 126 EVQGLLETSCRSCREDIGVERLFSIIENRNA------EQGVKV-------KTTSTQVYVA 172
E + L + + V RL ++ R A + V + KT
Sbjct: 114 EQRDRLYNDNQVFAKY-NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT----WVAL 168
Query: 173 SAQKNL-VEPRMQLCHELW--GGEKTQEKPKLSGLQSFLKGVQEN---NPNLSKPPEGGI 226
+ V+ +M W + L LQ L + N + S + I
Sbjct: 169 DVCLSYKVQCKMD-FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 227 EEAPSQVQE--------------DQVRNP-----------ML------SVVTFLESL--- 252
++++ V+N +L V FL +
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287
Query: 253 ---VNKNEDG-----------RILVTKNPELSKS-------HIKYI---LLNPANHF--- 285
++ + + L + +L + + I + + +
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347
Query: 286 ----TDIVQDARSIIVAGGTMEPVSEFKDQLFGSLGV-PESRIHHFSCGHVIP------- 333
D + + +EP +E++ ++F L V P S H IP
Sbjct: 348 KHVNCDKLTTIIESSLN--VLEP-AEYR-KMFDRLSVFPPS-AH-------IPTILLSLI 395
Query: 334 ----KENILPLILCS---------GPTNRKF---DLTFENRTKGDTLKEIAMTITNLCTI 377
++ + +++ P + E + K + + +I +
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD-HYN 454
Query: 378 VPKGMVCFFP---------SYDYEAIVYNYMPDIEKTQEKPKLSGLQ---SFLKGVQENN 425
+PK F Y Y I + ++ +IE + + FL+
Sbjct: 455 IPK---TFDSDDLIPPYLDQYFYSHIGH-HLKNIEHPERMTLFRMVFLDFRFLE------ 504
Query: 426 PNLSKPSEGGIEEAPSQVQEDQVRNPMLSVVTFLESLVNKNEDGRILVTKNPELSKSHIK 485
K I + L + F + + N+ K L + +
Sbjct: 505 ---QK-----IRHDSTAWNASGSILNTLQQLKFYKPYICDNDP------KYERLVNAILD 550
Query: 486 YILLNPANH-----FTDIVQDA 502
+ L + +TD+++ A
Sbjct: 551 F-LPKIEENLICSKYTDLLRIA 571
Score = 49.5 bits (117), Expect = 3e-06
Identities = 48/412 (11%), Positives = 113/412 (27%), Gaps = 136/412 (33%)
Query: 320 ESRIHHFSCGHVIPKENILPLILCSGPTNRKFDLTFENRTKGDTLKEIAMTITNLCTIVP 379
E+ H + +IL + F F+ + D K I
Sbjct: 10 ETGEHQYQYK------DILSVFE------DAFVDNFDCKDVQDMPKSI------------ 45
Query: 380 KGMVCFFPSYDYEAIVYNYMPDIEKT-------QEKPKLSGLQSFLKGV-QENNPNLSKP 431
+ + I+ + T K + +Q F++ V + N L
Sbjct: 46 ------LSKEEIDHII-MSKDAVSGTLRLFWTLLSKQE-EMVQKFVEEVLRINYKFLM-- 95
Query: 432 SEGGIEEAPSQVQEDQVRNPMLSVVTFLESLVNKNEDGRIL----VTKNPELSKSHIKYI 487
S ++ + R P + ++E D ++ V++ K ++
Sbjct: 96 ---------SPIKT-EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK--LRQA 143
Query: 488 LLNPANHFTDIVQDARSIIVAGGTM----------------EPVSEFKDQLF----GSLG 527
LL ++ A+++++ G + + + ++F +
Sbjct: 144 LLE--------LRPAKNVLIDG--VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN 193
Query: 528 VPESRI-------HHFSCGHVIPKENILPLILCSGPTNRKFDLTFENRTKGDTL------ 574
PE+ + + ++ + L + +++ + L
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253
Query: 575 --KEI--AMTITNLCTIVPKGMVCFFPSYDYEAIVYNYMRDNHFIERIARIAKKKVVFRE 630
+ A ++ C I+ + R + ++ +
Sbjct: 254 QNAKAWNAFNLS--CKIL---------------LT---TRFKQVTDFLSAATTTHISLDH 293
Query: 631 PKKT---SEVDKVLSDY-GTSVE-------KGGALMLSVIGGKLSEGLNFSD 671
T EV +L Y + LS+I + +GL D
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD 345
Score = 48.3 bits (114), Expect = 8e-06
Identities = 73/497 (14%), Positives = 139/497 (27%), Gaps = 176/497 (35%)
Query: 245 VVTFLESLVNKNEDGRILVTKNPELSKSHIKYILLN-PANHFTDIVQDA----------- 292
V +S+++K E I+++K+ + + LL+ V++
Sbjct: 38 VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP 97
Query: 293 ---RSIIVAGGTMEPVSE----FKD-QLFGSLGVPESRIHHFSCGHVI--------PKEN 336
+ T + + + D Q+F V R+ + + P +N
Sbjct: 98 IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS--RLQPY---LKLRQALLELRPAKN 152
Query: 337 I------------LPLILC-SGPTNRKFD-----LTFENRTKGDTLKEIAMTITNLCTIV 378
+ + L +C S K D L +N +T+ E+ + L +
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM---LQKLLYQI 209
Query: 379 PKGMVCFFPSYDYEAIVYNYMPDIEKTQEKPKLSGLQSFLKGVQENNPN----LSKPSEG 434
+ N I Q + L+ LK + N L
Sbjct: 210 DP-NWTSRSDHS-----SNIKLRIHSIQAE-----LRRLLK--SKPYENCLLVL------ 250
Query: 435 GIEEAPSQVQEDQVRNPMLSVV-TFLESLVNKNEDG--RILV-TKNPE----LSKSHIKY 486
V+N F + +IL+ T+ + LS + +
Sbjct: 251 -----------LNVQNA--KAWNAF---------NLSCKILLTTRFKQVTDFLSAATTTH 288
Query: 487 ILLNPANH-FTDIVQDARSIIVAGGTMEPVSEFKDQLFGSLGVPESRIHHFSCGHVIPKE 545
I L+ + T E K L L +P+E
Sbjct: 289 ISLDHHSMTLTP------------------DEVKSLLLKYLDCRPQD---------LPRE 321
Query: 546 --NILPLILCS-GPTNRKFDLTFEN--RTKGDTLKE-IAMTITNL-----------CTI- 587
P L + R T++N D L I ++ L ++
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381
Query: 588 -----VPKGMVCFF----PSYDYEAIVYNYMRDNHFIERIARIAKKKVVFREPKK-TSEV 637
+P ++ D +V N K +V ++PK+ T +
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVV------NKL-------HKYSLVEKQPKESTISI 428
Query: 638 DKVLSDYGTSVEKGGAL 654
+ + +E AL
Sbjct: 429 PSIYLELKVKLENEYAL 445
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for
infectious disease, S aminoacylation, tRNA activation,
charged tRNA; HET: HIS; 2.65A {Burkholderia
thailandensis}
Length = 467
Score = 63.4 bits (155), Expect = 9e-11
Identities = 31/121 (25%), Positives = 45/121 (37%), Gaps = 30/121 (24%)
Query: 72 LARGLDYYTGVIYEAVLKD-QAVGSVAGGGRYDNLVGMFDPKNKTTPCV--AAKLLHEVQ 128
L RGLDYY ++E V A G+VA GGRYD L+ K T A
Sbjct: 284 LVRGLDYYNLTVFEWVTDKLGAQGTVAAGGRYDPLIEQLG--GKPTAACGWA-------- 333
Query: 129 GLLETSCRSCREDIGVERLFSIIENRNAEQGVKVKTTSTQVYVASAQKNLVEPRMQLCHE 188
+G+ER+ +++ E+ + + VYV E +
Sbjct: 334 -------------MGIERILELLK----EEHLVPEQEGVDVYVVHQGDAAREQAFIVAER 376
Query: 189 L 189
L
Sbjct: 377 L 377
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP
+ L-histidine tRNA(His)-> AMP + PPI +
L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP:
c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Length = 421
Score = 60.7 bits (148), Expect = 6e-10
Identities = 28/133 (21%), Positives = 44/133 (33%), Gaps = 29/133 (21%)
Query: 67 VFDLSLARGLDYYTGVIYEAVLKD-QAVGSVAGGGRYDNLVGMFDPKNKTTPCV--AAKL 123
+ +L RGLDYY +E ++ A ++ GGGRYD L + P V A
Sbjct: 252 ELEPALVRGLDYYVRTAFEVHHEEIGAQSALGGGGRYDGLSELLG--GPRVPGVGFA--- 306
Query: 124 LHEVQGLLETSCRSCREDIGVERLFSIIENRNAEQGVKVKTTSTQVYVASAQKNLVEPRM 183
GVER+ +E + +Y+ + V
Sbjct: 307 ------------------FGVERVALALEAEGFGLPEE---KGPDLYLIPLTEEAVAEAF 345
Query: 184 QLCHELWGGEKTQ 196
L L + +
Sbjct: 346 YLAEALRPRLRAE 358
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate),
aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A
{Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A*
1kmn_A* 2el9_A*
Length = 423
Score = 60.7 bits (148), Expect = 7e-10
Identities = 32/121 (26%), Positives = 47/121 (38%), Gaps = 29/121 (23%)
Query: 72 LARGLDYYTGVIYEAVLKD-QAVGSVAGGGRYDNLVGMFDPKNKTTPCV--AAKLLHEVQ 128
L RGLDYY ++E V + G+V GGRYD LV + TP V A
Sbjct: 256 LVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLG--GRATPAVGFA-------- 305
Query: 129 GLLETSCRSCREDIGVERLFSIIENRNAEQGVKVKTTSTQVYVASAQKNLVEPRMQLCHE 188
+G+ERL +++ N E +Y+ ++ + M L
Sbjct: 306 -------------MGLERLVLLVQAVNPEFKAD---PVVDIYLVASGADTQSAAMALAER 349
Query: 189 L 189
L
Sbjct: 350 L 350
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet,
ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1
d.104.1.1
Length = 420
Score = 60.7 bits (148), Expect = 7e-10
Identities = 27/129 (20%), Positives = 51/129 (39%), Gaps = 32/129 (24%)
Query: 67 VFDLSLARGLDYYTGVIYEAV----LKDQAVGSVAGGGRYDNLVGMFDPKNKTTPCV--A 120
D +L RGLDYYT +E + D A+ ++ GGGRY+ L+ + D + + A
Sbjct: 250 TEDPNLVRGLDYYTHTAFELMMDNPNYDGAITTLCGGGRYNGLLELLD--GPSETGIGFA 307
Query: 121 AKLLHEVQGLLETSCRSCREDIGVERLFSIIENRNAEQGVKVKTTSTQVYVASAQKNLVE 180
+ +ERL +E E ++ + +++ +
Sbjct: 308 ---------------------LSIERLLLALEEEGIELDIE---ENLDLFIVTMGDQADR 343
Query: 181 PRMQLCHEL 189
++L + L
Sbjct: 344 YAVKLLNHL 352
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.29
Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 13/35 (37%)
Query: 197 EKPKLSGLQSFLKGVQENNPNLSKPPEGGIEEAPS 231
EK L LQ+ LK L + AP+
Sbjct: 18 EKQALKKLQASLK--------LYAD-----DSAPA 39
Score = 32.2 bits (72), Expect = 0.29
Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 13/35 (37%)
Query: 407 EKPKLSGLQSFLKGVQENNPNLSKPSEGGIEEAPS 441
EK L LQ+ LK L + AP+
Sbjct: 18 EKQALKKLQASLK--------LYAD-----DSAPA 39
>1tvj_A Cofilin; ADF, actin binding protein, actin depolymerizing factor,
actin-binding protein; NMR {Gallus gallus}
Length = 166
Score = 31.0 bits (69), Expect = 0.75
Identities = 17/103 (16%), Positives = 37/103 (35%)
Query: 242 MLSVVTFLESLVNKNEDGRILVTKNPELSKSHIKYILLNPANHFTDIVQDARSIIVAGGT 301
M S VT + ++ D ++ + PE K K +L ++ I+ + I+ G
Sbjct: 1 MASGVTVNDEVIKVFNDMKVRKSSTPEEIKKRKKAVLFCLSDDKKQIIVEEAKQILVGDI 60
Query: 302 MEPVSEFKDQLFGSLGVPESRIHHFSCGHVIPKENILPLILCS 344
+ V + L + + R + + + L+
Sbjct: 61 GDTVEDPYTAFVKLLPLNDCRYALYDATYETKESKKEDLVFIF 103
Score = 31.0 bits (69), Expect = 0.75
Identities = 17/103 (16%), Positives = 37/103 (35%)
Query: 452 MLSVVTFLESLVNKNEDGRILVTKNPELSKSHIKYILLNPANHFTDIVQDARSIIVAGGT 511
M S VT + ++ D ++ + PE K K +L ++ I+ + I+ G
Sbjct: 1 MASGVTVNDEVIKVFNDMKVRKSSTPEEIKKRKKAVLFCLSDDKKQIIVEEAKQILVGDI 60
Query: 512 MEPVSEFKDQLFGSLGVPESRIHHFSCGHVIPKENILPLILCS 554
+ V + L + + R + + + L+
Sbjct: 61 GDTVEDPYTAFVKLLPLNDCRYALYDATYETKESKKEDLVFIF 103
>1h2e_A Phosphatase, YHFR; hydrolase, broad specificity phosphatase, DPGM
homolog; 1.69A {Bacillus stearothermophilus} SCOP:
c.60.1.1 PDB: 1h2f_A* 1ebb_A
Length = 207
Score = 29.5 bits (67), Expect = 2.5
Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 11/50 (22%)
Query: 214 NNPNLSKPPEGGIEEAPSQVQEDQVRNPMLSVVTFLESLVNKNEDGRILV 263
P+L P G E VQ+ R + ++S+V+++E +L+
Sbjct: 109 QAPHLYAPQRG---ERFCDVQQ---R-----ALEAVQSIVDRHEGETVLI 147
>1mqo_A Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolase; HET: CIT;
1.35A {Bacillus cereus} SCOP: d.157.1.1 PDB: 1bc2_A
1bvt_A* 3i0v_A 3i11_A 3i13_A 3i14_A 3i15_A 2uyx_A 2bc2_A
3bc2_A 2bfl_A 2bfk_A 2bfz_B 2bg2_A 2bg7_A 2bg8_A 1dxk_A
3kns_A 3knr_A 2bfz_A ...
Length = 227
Score = 29.4 bits (66), Expect = 3.4
Identities = 16/108 (14%), Positives = 30/108 (27%), Gaps = 30/108 (27%)
Query: 292 ARSIIVAGGTMEPVSEFKDQLFGSLGVPESRIHHFSCGH-------VIPKENILPLILCS 344
+ G EP+ + + G + + GH +P+ N IL
Sbjct: 111 TAELAKKNGYEEPLGDLQTVTNLKFGNMKVETFYPGKGHTEDNIVVWLPQYN----ILVG 166
Query: 345 GPTNRKFDLTFENRTKG-------------DTLKEIAMTITNLCTIVP 379
G L K +++ + N+ +VP
Sbjct: 167 G------CLVKSTSAKDLGNVADAYVNEWSTSIENVLKRYRNINAVVP 208
Score = 29.4 bits (66), Expect = 3.4
Identities = 16/108 (14%), Positives = 30/108 (27%), Gaps = 30/108 (27%)
Query: 502 ARSIIVAGGTMEPVSEFKDQLFGSLGVPESRIHHFSCGH-------VIPKENILPLILCS 554
+ G EP+ + + G + + GH +P+ N IL
Sbjct: 111 TAELAKKNGYEEPLGDLQTVTNLKFGNMKVETFYPGKGHTEDNIVVWLPQYN----ILVG 166
Query: 555 GPTNRKFDLTFENRTKG-------------DTLKEIAMTITNLCTIVP 589
G L K +++ + N+ +VP
Sbjct: 167 G------CLVKSTSAKDLGNVADAYVNEWSTSIENVLKRYRNINAVVP 208
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein
complex; HET: FMN ADP AMP; 2.0A {Methylophilus
methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB:
1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Length = 729
Score = 28.9 bits (65), Expect = 6.7
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 11/43 (25%)
Query: 8 SPEVADKIGEYVLKHGHVDLVE---NLLAD-EFLAKSKQAKEG 46
PE +I + G+ D++ +AD K ++G
Sbjct: 302 DPEKMIEI----VTKGYADIIGCARPSIADPFLPQK---VEQG 337
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 28.1 bits (62), Expect = 7.2
Identities = 9/59 (15%), Positives = 12/59 (20%), Gaps = 27/59 (45%)
Query: 99 GGRYDNLVGMFDPKNKTTPCVAAKLLHEVQGLLETSCRSC-------REDIGVE-RLFS 149
+V +G + C C D E R FS
Sbjct: 28 KVYPPKIV--ERFS---------------EG--DVVCALCGLVLSDKLVDTRSEWRTFS 67
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.136 0.394
Gapped
Lambda K H
0.267 0.0747 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,473,836
Number of extensions: 646323
Number of successful extensions: 1486
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1439
Number of HSP's successfully gapped: 48
Length of query: 690
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 590
Effective length of database: 3,909,693
Effective search space: 2306718870
Effective search space used: 2306718870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (27.2 bits)