RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1221
(690 letters)
>d1usya_ d.104.1.1 (A:) ATP phosphoribosyltransferase regulatory
subunit HisZ {Thermotoga maritima [TaxId: 2336]}
Length = 275
Score = 79.4 bits (195), Expect = 5e-17
Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 1/82 (1%)
Query: 25 VDLVENLLADEFLAKSKQAKEGLEAIKLLFHYCQIYGLKDTIVFDLSLARGLDYYTGVIY 84
++ + E L E + + Q ++ DL+LAR ++ Y G+I+
Sbjct: 180 IEDSIYRRSPEHLKTMDLPLSVREDLLSASSFLQEKFPTVSVEIDLTLARTIEEYCGLIF 239
Query: 85 EAVLKDQAVGSVAGGGRYDNLV 106
+ VA GG Y
Sbjct: 240 TIYDTSSS-RLVAAGGEYTVNG 260
>d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS)
{Thermus thermophilus [TaxId: 274]}
Length = 324
Score = 79.3 bits (194), Expect = 1e-16
Identities = 31/157 (19%), Positives = 53/157 (33%), Gaps = 24/157 (15%)
Query: 4 EKNLSPEVADKIGEYVLK--HGHVDLVENLLADEFLAKSKQAKEGLEAIKLLFHYCQIYG 61
+ LS + +++ E ++ + + LL + + L +
Sbjct: 186 REALSEDSKERLEENPMRILDSKSERDQALLKELGVRPMLDFLGEEARAHLKEVERHLER 245
Query: 62 LKDTIVFDLSLARGLDYYTGVIYEAVLKDQ-AVGSVAGGGRYDNLVGMFDPKNKTTPCVA 120
L + +L RGLDYY +E ++ A ++ GGGRYD L + P V
Sbjct: 246 LSVPYELEPALVRGLDYYVRTAFEVHHEEIGAQSALGGGGRYDGLSELLGGPR--VPGV- 302
Query: 121 AKLLHEVQGLLETSCRSCREDIGVERLFSIIENRNAE 157
G GVER+ +E
Sbjct: 303 --------GF----------AFGVERVALALEAEGFG 321
>d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS)
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 327
Score = 79.4 bits (194), Expect = 1e-16
Identities = 30/124 (24%), Positives = 56/124 (45%), Gaps = 22/124 (17%)
Query: 34 DEFLAKSKQAKEGLEAIKLLFHYCQIYGLKDTIVFDLSLARGLDYYTGVIYEAVLKDQAV 93
DE + ++ E + + + YG+K+ + +D S+ RGL YYTG+++EA +
Sbjct: 224 DEMARITGKSSEEIARMAAVEDLLASYGVKN-VRYDFSIVRGLSYYTGIVFEAYDRSGQF 282
Query: 94 GSVAGGGRYDNLVGMFDPKNKTTPCVAAKLLHEVQGLLETSCRSCREDIGVERLFSIIEN 153
++ GGGRYDNL + ++ P V G +G + +++
Sbjct: 283 RAILGGGRYDNLASLM--SGESVPAV---------GF----------GMGDAVISLLLKR 321
Query: 154 RNAE 157
N +
Sbjct: 322 ENVQ 325
>d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase
regulatory subunit HisZ {Lactococcus lactis [TaxId:
1358]}
Length = 318
Score = 76.2 bits (186), Expect = 1e-15
Identities = 21/121 (17%), Positives = 44/121 (36%), Gaps = 23/121 (19%)
Query: 35 EFLAKSKQAKEGLEAIKLLFHYCQIYGLKDTIVFDLSLARGLDYYTGVIYEAVLKDQAVG 94
E L + + + + L + + + I+ DL + +DYYT ++++A A
Sbjct: 220 ENLVTNTKDDVLISSFDQLKEFSEKLSMIKPIIIDLGMVPKMDYYTDLMFKAYSSA-ANQ 278
Query: 95 SVAGGGRYDNLVGMFDPKNKTTPCVAAKLLHEVQGLLETSCRSCREDIGVERLFSIIENR 154
+ GGRYD L+ F + + G ++ + +E +
Sbjct: 279 PILSGGRYDQLLSNFQEE---AFAI---------GF----------CCHMDTILKALERQ 316
Query: 155 N 155
Sbjct: 317 E 317
>d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS)
{Escherichia coli [TaxId: 562]}
Length = 322
Score = 75.1 bits (183), Expect = 3e-15
Identities = 31/155 (20%), Positives = 50/155 (32%), Gaps = 22/155 (14%)
Query: 4 EKNLSPEVADKIGEYVLKHGHVDLVENLLADEFLAKSKQAKEGLEAIKLLFHYCQIYGLK 63
++ L + ++ L+ E + +
Sbjct: 186 KEKLDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEESREHFAGLCKLLESAG 245
Query: 64 DTIVFDLSLARGLDYYTGVIYEAVLKDQ-AVGSVAGGGRYDNLVGMFDPKNKTTPCVAAK 122
+ L RGLDYY ++E V + G+V GGRYD LV + TP V
Sbjct: 246 IAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRA--TPAV--- 300
Query: 123 LLHEVQGLLETSCRSCREDIGVERLFSIIENRNAE 157
G +G+ERL +++ N E
Sbjct: 301 ------GF----------AMGLERLVLLVQAVNPE 319
>d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS)
{Staphylococcus aureus [TaxId: 1280]}
Length = 325
Score = 72.3 bits (176), Expect = 2e-14
Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 29/111 (26%)
Query: 56 YCQIYGLKDTIVFDLSLARGLDYYTGVIYEAVLK----DQAVGSVAGGGRYDNLVGMFDP 111
+ L D +L RGLDYYT +E ++ D A+ ++ GGGRY+ L+ + D
Sbjct: 239 KAYLDDLGIPYTEDPNLVRGLDYYTHTAFELMMDNPNYDGAITTLCGGGRYNGLLELLDG 298
Query: 112 KNKTTPCVAAKLLHEVQGLLETSCRSCREDIGVERLFSIIENRNAEQGVKV 162
+ + G + +ERL +E E+G+++
Sbjct: 299 PS--ETGI---------GF----------ALSIERLLLALE----EEGIEL 324
>d1mska_ d.173.1.1 (A:) Methionine synthase SAM-binding domain
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 29.6 bits (66), Expect = 1.3
Identities = 17/102 (16%), Positives = 34/102 (33%), Gaps = 15/102 (14%)
Query: 559 RKFDLTFENRTKGD---TLKEIAMTITNLC----TIVPKGMVCFFPSY--DYEAIVYNYM 609
K+ E+ G L + A + + T+ P+G+V FP+ + +Y
Sbjct: 58 GKYPRILEDEVVGVEAQRLFKDANDMLDKLSAEKTLNPRGVVGLFPANRVGDDIEIYRDE 117
Query: 610 RDNHFIERIARIAKKKVVFREPKKTSEVDKVLSDYGTSVEKG 651
H I + ++ + L+D+ G
Sbjct: 118 TRTHVINVSHHLRQQTEKTGFA------NYCLADFVAPKLSG 153
Score = 27.7 bits (61), Expect = 5.2
Identities = 14/93 (15%), Positives = 30/93 (32%), Gaps = 14/93 (15%)
Query: 349 RKFDLTFENRTKGD---TLKEIAMTITNLC----TIVPKGMVCFFPSY--DYEAIVYNYM 399
K+ E+ G L + A + + T+ P+G+V FP+ + +Y
Sbjct: 58 GKYPRILEDEVVGVEAQRLFKDANDMLDKLSAEKTLNPRGVVGLFPANRVGDDIEIYR-- 115
Query: 400 PDIEKTQEKPKLSGLQSFLKGVQENNPNLSKPS 432
++T+ + + N
Sbjct: 116 ---DETRTHVINVSHHLRQQTEKTGFANYCLAD 145
>d2nrac2 a.4.5.10 (C:152-268) Replication initiation protein PI
{Escherichia coli [TaxId: 562]}
Length = 117
Score = 26.8 bits (59), Expect = 4.3
Identities = 11/77 (14%), Positives = 25/77 (32%), Gaps = 5/77 (6%)
Query: 550 LILCSGPTNRKFDLTFENRTKGDTLKEIAMTITNLCTIVPKGMVCFFPSYDYEAIVYNYM 609
L L S ++ + L ++ + +++ L K + + I Y Y
Sbjct: 13 LRLSSQYSSSLYQLIRKHYSNFKKKNYFIISVDEL-----KEELIAYTFDKDGNIEYKYP 67
Query: 610 RDNHFIERIARIAKKKV 626
F + A ++
Sbjct: 68 DFPIFKRDVLNKAIAEI 84
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.136 0.394
Gapped
Lambda K H
0.267 0.0632 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,541,031
Number of extensions: 121658
Number of successful extensions: 303
Number of sequences better than 10.0: 1
Number of HSP's gapped: 293
Number of HSP's successfully gapped: 13
Length of query: 690
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 598
Effective length of database: 1,144,436
Effective search space: 684372728
Effective search space used: 684372728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.6 bits)