BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12210
(405 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 129 bits (323), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 73/207 (35%), Positives = 98/207 (47%), Gaps = 48/207 (23%)
Query: 97 CPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLS 156
CP C C++ IVDCR KGL ++P LPE TE+RLEQN I +PP AF+ YK+LRRIDLS
Sbjct: 5 CPAACTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLS 64
Query: 157 KNQISKVAVDAFQGLKXXXXXXXXXXXXXYLP---------------------------- 188
NQIS++A DAFQGL+ LP
Sbjct: 65 NNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINXLRVDAF 124
Query: 189 --------------------DGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLG 228
G F+ L ++T+ +++N FICDCHL WL +L P
Sbjct: 125 QDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKWLADYLHTNPIET 184
Query: 229 LYTKCFAPSHIKGQNILDIPEHEFKCS 255
+C +P + + I I +F+CS
Sbjct: 185 SGARCTSPRRLANKRIGQIKSKKFRCS 211
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 54/111 (48%), Gaps = 30/111 (27%)
Query: 295 CPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWTN 354
CP C C++ IVDCR KGL ++P LPE TE+
Sbjct: 5 CPAACTCSNNIVDCRGKGLTEIPTNLPETITEI--------------------------- 37
Query: 355 RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
RLEQN I +PP AF+ YK+LRRI L N I+EL P AF + L +
Sbjct: 38 ---RLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSL 85
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%)
Query: 4 TLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPS 63
+L +N L + G F+ L ++T+ +++N FICDCHL WL +L P +C +P
Sbjct: 134 SLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKWLADYLHTNPIETSGARCTSPR 193
Query: 64 HIKGQNILDIPEHEFKCS 81
+ + I I +F+CS
Sbjct: 194 RLANKRIGQIKSKKFRCS 211
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 128 bits (322), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 73/207 (35%), Positives = 98/207 (47%), Gaps = 48/207 (23%)
Query: 97 CPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLS 156
CP C C++ IVDCR KGL ++P LPE TE+RLEQN I +PP AF+ YK+LRRIDLS
Sbjct: 5 CPAACTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLS 64
Query: 157 KNQISKVAVDAFQGLKXXXXXXXXXXXXXYLP---------------------------- 188
NQIS++A DAFQGL+ LP
Sbjct: 65 NNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAF 124
Query: 189 --------------------DGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLG 228
G F+ L ++T+ +++N FICDCHL WL +L P
Sbjct: 125 QDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKWLADYLHTNPIET 184
Query: 229 LYTKCFAPSHIKGQNILDIPEHEFKCS 255
+C +P + + I I +F+CS
Sbjct: 185 SGARCTSPRRLANKRIGQIKSKKFRCS 211
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 54/111 (48%), Gaps = 30/111 (27%)
Query: 295 CPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWTN 354
CP C C++ IVDCR KGL ++P LPE TE+
Sbjct: 5 CPAACTCSNNIVDCRGKGLTEIPTNLPETITEI--------------------------- 37
Query: 355 RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
RLEQN I +PP AF+ YK+LRRI L N I+EL P AF + L +
Sbjct: 38 ---RLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSL 85
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%)
Query: 4 TLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPS 63
+L +N L + G F+ L ++T+ +++N FICDCHL WL +L P +C +P
Sbjct: 134 SLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKWLADYLHTNPIETSGARCTSPR 193
Query: 64 HIKGQNILDIPEHEFKCS 81
+ + I I +F+CS
Sbjct: 194 RLANKRIGQIKSKKFRCS 211
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 98.6 bits (244), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 84/189 (44%), Gaps = 25/189 (13%)
Query: 97 CPHPCRCADGIVDCREKGLNKVPILLPEATTEL-------------------------RL 131
CP C C VDC +GL ++P +P TTEL L
Sbjct: 2 CPAMCHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLEL 61
Query: 132 EQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKXXXXXXXXXXXXXYLPDGV 191
++N +T + P AF ++ + L +N+I +++ F GL + G
Sbjct: 62 KRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGS 121
Query: 192 FAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHE 251
F L L +L ++ N F C+CHL+W WL++ G +C APS ++ I D+P E
Sbjct: 122 FEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSE 181
Query: 252 FKCSGSSME 260
FKCS + E
Sbjct: 182 FKCSSENSE 190
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 3 RTLN--NNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCF 60
+TLN +N ++ + G F L L +L ++ N F C+CHL+W WL++ G +C
Sbjct: 105 KTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCG 164
Query: 61 APSHIKGQNILDIPEHEFKCS 81
APS ++ I D+P EFKCS
Sbjct: 165 APSKVRDVQIKDLPHSEFKCS 185
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 7/112 (6%)
Query: 295 CPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVS-IDRVDKVLLYSYISNNFKRWT 353
CP C C VDC +GL ++P +P TTEL + + R+ L+ + + K
Sbjct: 2 CPAMCHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVK--- 58
Query: 354 NRSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
L++N +T + P AF ++ ++L +N I E+ K F +L+ +
Sbjct: 59 ---LELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTL 107
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 95.1 bits (235), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 78/182 (42%), Gaps = 25/182 (13%)
Query: 97 CPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLS 156
CP C C D +V C KGL +P +P TEL L+ N T L PK +NYK L IDLS
Sbjct: 4 CPTECTCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLS 62
Query: 157 KNQISKVAVDAFQ------------------------GLKXXXXXXXXXXXXXYLPDGVF 192
N+IS ++ +F GLK +P+G F
Sbjct: 63 NNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAF 122
Query: 193 AELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEF 252
+L L L I N CDC++ WL W+K + +C P + + +L P +F
Sbjct: 123 NDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEPGIARCAGPGEMADKLLLTTPSKKF 182
Query: 253 KC 254
C
Sbjct: 183 TC 184
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%)
Query: 4 TLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPS 63
+L+ N+++ +P+G F +L L L I N CDC++ WL W+K + +C P
Sbjct: 108 SLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEPGIARCAGPG 167
Query: 64 HIKGQNILDIPEHEFKC 80
+ + +L P +F C
Sbjct: 168 EMADKLLLTTPSKKFTC 184
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 53/111 (47%), Gaps = 7/111 (6%)
Query: 295 CPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWTN 354
CP C C D +V C KGL +P +P TEL +D L+ +S N+K T
Sbjct: 4 CPTECTCLDTVVRCSNKGLKVLPKGIPRDVTELY----LDGNQFTLVPKELS-NYKHLT- 57
Query: 355 RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
L N I+ L ++F+N +L + L N + +PP+ F K LR +
Sbjct: 58 -LIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLL 107
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 71/169 (42%), Gaps = 14/169 (8%)
Query: 96 SCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDL 155
+CP C C+ VDC K L VP +P T L L N IT+L P F +L R+DL
Sbjct: 2 ACPSQCSCSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDL 61
Query: 156 SKNQISKVAVDAFQGLKXXXXXXXXXXXXXYLPDGVFAELFRLRTLRISENSFICDCH-L 214
NQ++ + F L +P G F L L + + N + C C +
Sbjct: 62 DNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDI 121
Query: 215 SWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRS 263
+L RW+ ++P L L++ +CSG++ R+
Sbjct: 122 LYLSRWISQHPGLVF-------------GYLNLDPDSARCSGTNTPVRA 157
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 8/113 (7%)
Query: 294 SCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWT 353
+CP C C+ VDC K L VP +P TT++ Y+ +++ K+ F R T
Sbjct: 2 ACPSQCSCSGTTVDCSGKSLASVPTGIP-TTTQVLYLYD-NQITKL-----EPGVFDRLT 54
Query: 354 NRSR-RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
+R L+ N +T LP F +L ++ L N + +P AF N K L +
Sbjct: 55 QLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHI 107
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 17/99 (17%)
Query: 4 TLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCH-LSWLHRWLKRYPRLGLYTKCFAP 62
+LN+N L +P G F L L + + N + C C + +L RW+ ++P L
Sbjct: 84 SLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWISQHPGLVF------- 136
Query: 63 SHIKGQNILDIPEHEFKCSG---PVEKPTGECAAEPSCP 98
L++ +CSG PV T + CP
Sbjct: 137 ------GYLNLDPDSARCSGTNTPVRAVTEASTSPSKCP 169
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 72/173 (41%), Gaps = 14/173 (8%)
Query: 92 AAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLR 151
A +CP C C+ VDC K L VP +P T L L N IT+L P F +L
Sbjct: 6 ARGSACPSQCSCSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLT 65
Query: 152 RIDLSKNQISKVAVDAFQGLKXXXXXXXXXXXXXYLPDGVFAELFRLRTLRISENSFICD 211
R+DL NQ++ + F L +P G F L L + + N + C
Sbjct: 66 RLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 125
Query: 212 CH-LSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRS 263
C + +L RW+ ++P L L++ +CSG++ R+
Sbjct: 126 CSDILYLSRWISQHPGLVF-------------GYLNLDPDSARCSGTNTPVRA 165
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 55/117 (47%), Gaps = 8/117 (6%)
Query: 290 AAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNF 349
A +CP C C+ VDC K L VP +P TT++ Y+ +++ K+ F
Sbjct: 6 ARGSACPSQCSCSGTTVDCSGKSLASVPTGIP-TTTQVLYLYD-NQITKLE-----PGVF 58
Query: 350 KRWTNRSR-RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
R T +R L+ N +T LP F +L ++ L N + +P AF N K L +
Sbjct: 59 DRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHI 115
Score = 34.7 bits (78), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 17/99 (17%)
Query: 4 TLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCH-LSWLHRWLKRYPRLGLYTKCFAP 62
+LN+N L +P G F L L + + N + C C + +L RW+ ++P L
Sbjct: 92 SLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWISQHPGLVF------- 144
Query: 63 SHIKGQNILDIPEHEFKCSG---PVEKPTGECAAEPSCP 98
L++ +CSG PV T + CP
Sbjct: 145 ------GYLNLDPDSARCSGTNTPVRAVTEASTSPSKCP 177
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 71/169 (42%), Gaps = 14/169 (8%)
Query: 96 SCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDL 155
+CP C C+ VDC K L VP +P T L L N IT+L P F +L R+DL
Sbjct: 2 ACPSQCSCSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNRITKLEPGVFDRLTQLTRLDL 61
Query: 156 SKNQISKVAVDAFQGLKXXXXXXXXXXXXXYLPDGVFAELFRLRTLRISENSFICDCH-L 214
NQ++ + F L +P G F L L + + N + C C +
Sbjct: 62 DNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNNPWDCACSDI 121
Query: 215 SWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRS 263
+L RW+ ++P L L++ +CSG++ R+
Sbjct: 122 LYLSRWISQHPWLVF-------------GYLNLDHDSARCSGTNTPVRA 157
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 8/113 (7%)
Query: 294 SCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWT 353
+CP C C+ VDC K L VP +P TT++ Y+ +R+ K+ F R T
Sbjct: 2 ACPSQCSCSGTTVDCSGKSLASVPTGIP-TTTQVLYLYD-NRITKL-----EPGVFDRLT 54
Query: 354 NRSR-RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
+R L+ N +T LP F +L ++ L N + +P AF N + L +
Sbjct: 55 QLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHI 107
Score = 35.0 bits (79), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 17/99 (17%)
Query: 4 TLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCH-LSWLHRWLKRYPRLGLYTKCFAP 62
+LN+N L +P G F L L + + N + C C + +L RW+ ++P L
Sbjct: 84 SLNDNQLKSIPRGAFDNLRSLTHIWLLNNPWDCACSDILYLSRWISQHPWLVF------- 136
Query: 63 SHIKGQNILDIPEHEFKCSG---PVEKPTGECAAEPSCP 98
L++ +CSG PV T + CP
Sbjct: 137 ------GYLNLDHDSARCSGTNTPVRAVTKASTSPSKCP 169
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 81/208 (38%), Gaps = 49/208 (23%)
Query: 96 SCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKA-FANYKRLRRID 154
+CP CRC VDC + LNK+P +P+ T ELRL N+ T L F +LR+I+
Sbjct: 4 ACPEKCRCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKIN 63
Query: 155 LSKNQISKVAVDAFQGLKXXXXXXXXXXXXXYLPDGVFAELFRLRTLRISEN-------- 206
S N+I+ + AF+G + +F L L+TL + N
Sbjct: 64 FSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGND 123
Query: 207 SFI----------------------------------------CDCHLSWLHRWLKRYPR 226
SFI C+C+L+WL WL++
Sbjct: 124 SFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAWLGEWLRKKRI 183
Query: 227 LGLYTKCFAPSHIKGQNILDIPEHEFKC 254
+ +C P +K I D+ +F C
Sbjct: 184 VTGNPRCQKPYFLKEIPIQDVAIQDFTC 211
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%)
Query: 4 TLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPS 63
+L +N +T + G F L L TL + N F C+C+L+WL WL++ + +C P
Sbjct: 135 SLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAWLGEWLRKKRIVTGNPRCQKPY 194
Query: 64 HIKGQNILDIPEHEFKC 80
+K I D+ +F C
Sbjct: 195 FLKEIPIQDVAIQDFTC 211
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Query: 294 SCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWT 353
+CP CRC VDC + LNK+P +P+ T EL ++ + +L + + FK+
Sbjct: 4 ACPEKCRCEGTTVDCSNQKLNKIPEHIPQYTAEL----RLNNNEFTVLEA--TGIFKKLP 57
Query: 354 N-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
R N IT++ AF + I L N + + K F + L+ +
Sbjct: 58 QLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTL 110
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 72/181 (39%), Gaps = 19/181 (10%)
Query: 97 CPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLS 156
CP C C+ + C KGL VP +P + T L LE N + LP F +L ++ LS
Sbjct: 1 CPSRCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLS 60
Query: 157 KNQISKVAVDAFQGLKXXXXXXXXXXXXXYLPDGVFAELFRLRTLRISENSF-------- 208
+NQI + F L LP+GVF +L +L+ L + N
Sbjct: 61 QNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIF 120
Query: 209 --ICDCHLSWLHR--WLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSK 264
+ WLH W PR+ ++ + K Q KCSGS RS
Sbjct: 121 DRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQG-------SAKCSGSGKPVRSI 173
Query: 265 I 265
I
Sbjct: 174 I 174
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 47/112 (41%), Gaps = 8/112 (7%)
Query: 295 CPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWTN 354
CP C C+ + C KGL VP +P + T L ++ L S F + T
Sbjct: 1 CPSRCSCSGTEIRCNSKGLTSVPTGIPSSATRL-------ELESNKLQSLPHGVFDKLTQ 53
Query: 355 RSR-RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
++ L QN I LP F +L + L +N + LP F +L+ +
Sbjct: 54 LTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKEL 105
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDC-HLSWLHRWLKR 49
L+ N L +PDG+F L L+ + + N + C C + +L RWL +
Sbjct: 107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 152
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 4 TLNNNNLTYLPDGVFAELFRLRTLRISENSF 34
+L+ N + LPDGVF +L +L L + EN
Sbjct: 58 SLSQNQIQSLPDGVFDKLTKLTILYLHENKL 88
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 1/133 (0%)
Query: 96 SCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDL 155
+CP C C+ V+C+E+ L VP +P T L L N IT+L P F + +L ++L
Sbjct: 12 ACPSQCSCSGTTVNCQERSLASVPAGIPTTTQVLHLYINQITKLEPGVFDSLTQLTYLNL 71
Query: 156 SKNQISKVAVDAFQGLKXXXXXXXXXXXXXYLPDGVFAELFRLRTLRISENSFICDCH-L 214
+ NQ++ + V F L +P GVF L L + + N + C+C +
Sbjct: 72 AVNQLTALPVGVFDKLTKLTHLALHINQLKSIPMGVFDNLKSLTHIYLFNNPWDCECSDI 131
Query: 215 SWLHRWLKRYPRL 227
+L W+ ++ +
Sbjct: 132 LYLKNWIVQHASI 144
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 8/113 (7%)
Query: 294 SCPHPCRCADGIVDCREKGLNKVPILLPEATTEL-TYMVSIDRVDKVLLYSYISNNFKRW 352
+CP C C+ V+C+E+ L VP +P T L Y+ I +++ + S +
Sbjct: 12 ACPSQCSCSGTTVNCQERSLASVPAGIPTTTQVLHLYINQITKLEPGVFDSLTQLTY--- 68
Query: 353 TNRSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
L N +T LP F +L + L N + +P F N K L +
Sbjct: 69 ----LNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSIPMGVFDNLKSLTHI 117
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 2/131 (1%)
Query: 128 ELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKXXXXXXXXXXXXXYL 187
EL + N E+ P +F L+++ + +Q+S + +AF GL L
Sbjct: 222 ELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL 281
Query: 188 PDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRY--PRLGLYTKCFAPSHIKGQNIL 245
P +F L L L + N + CDC + WL WL+ Y +C AP H++G+ ++
Sbjct: 282 PHDLFTPLRYLVELHLHHNPWNCDCDILWLAWWLREYIPTNSTCCGRCHAPMHMRGRYLV 341
Query: 246 DIPEHEFKCSG 256
++ + F+CS
Sbjct: 342 EVDQASFQCSA 352
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 2/113 (1%)
Query: 96 SCPHPCRCADGI--VDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRI 153
+CP C C++ V C +GL++VP +P T L L +N+I + F + L +
Sbjct: 45 NCPSVCSCSNQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVL 104
Query: 154 DLSKNQISKVAVDAFQGLKXXXXXXXXXXXXXYLPDGVFAELFRLRTLRISEN 206
L +N I ++ V AF GL +P G F L +LR L + N
Sbjct: 105 QLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNN 157
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 63/127 (49%), Gaps = 12/127 (9%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRY--PRLGLYTKCFAP 62
L +NNL+ LP +F L L L + N + CDC + WL WL+ Y +C AP
Sbjct: 273 LAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDILWLAWWLREYIPTNSTCCGRCHAP 332
Query: 63 SHIKGQNILDIPEHEFKCSGP--VEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPI 120
H++G+ ++++ + F+CS P ++ P +E R A+ + CR ++ V
Sbjct: 333 MHMRGRYLVEVDQASFQCSAPFIMDAPRDLNISEG------RMAE--LKCRTPPMSSVKW 384
Query: 121 LLPEATT 127
LLP T
Sbjct: 385 LLPNGTV 391
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 52/114 (45%), Gaps = 8/114 (7%)
Query: 294 SCPHPCRCADGI--VDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKR 351
+CP C C++ V C +GL++VP +P T L M + ++ + + ++ +
Sbjct: 45 NCPSVCSCSNQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHH---- 100
Query: 352 WTNRSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
+L +N I ++ AF L + L N +T +P AF +LR +
Sbjct: 101 --LEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLREL 152
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 55/132 (41%), Gaps = 6/132 (4%)
Query: 96 SCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDL 155
+CP C C+ VDCR K VP +P L L N IT+L P F + L+ + L
Sbjct: 12 ACPSQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYL 71
Query: 156 SKNQISKVAVDAFQGLKXXXXXXXXXXXXXYLPDGVFAELFRLRTLRISENSFICDCHLS 215
NQ+ + V F L LP VF L L+ L F+C L+
Sbjct: 72 GSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKEL------FMCCNKLT 125
Query: 216 WLHRWLKRYPRL 227
L R ++R L
Sbjct: 126 ELPRGIERLTHL 137
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 48/114 (42%), Gaps = 10/114 (8%)
Query: 294 SCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYM--VSIDRVDKVLLYSYISNNFKR 351
+CP C C+ VDCR K VP +P ++ Y+ I +++ + S I N K
Sbjct: 12 ACPSQCSCSGTTVDCRSKRHASVPAGIP-TNAQILYLHDNQITKLEPGVFDSLI--NLKE 68
Query: 352 WTNRSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
L N + LP F + +L + L N +T LP F L+ +
Sbjct: 69 L-----YLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKEL 117
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 73/162 (45%), Gaps = 8/162 (4%)
Query: 105 DGIVDCREKGLNKVPIL-LPEATTELRLEQ-----NDITELPPKAFANYKRLRRIDLSKN 158
+G+V+ R L + +P T +RLE+ N + + P +F LR++ L
Sbjct: 153 EGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHA 212
Query: 159 QISKVAVDAFQGLKXXXXXXXXXXXXXYLPDGVFAELFRLRTLRISENSFICDCHLSWLH 218
Q++ + +AF LK LP +F L RL + ++ N + C+C + WL
Sbjct: 213 QVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHNPWHCNCDVLWLS 272
Query: 219 RWLKRY--PRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSS 258
WLK +C AP+ +KG+ I ++ + F C +
Sbjct: 273 WWLKETVPSNTTCCARCHAPAGLKGRYIGELDQSHFTCYAGT 314
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 2/113 (1%)
Query: 96 SCPHPCRCADGI--VDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRI 153
SCP C C++ V C + L +VP +P T L L++N I + F + + L +
Sbjct: 5 SCPAACSCSNQASRVICTRRELAEVPASIPVNTRYLNLQENSIQVIRTDTFKHLRHLEIL 64
Query: 154 DLSKNQISKVAVDAFQGLKXXXXXXXXXXXXXYLPDGVFAELFRLRTLRISEN 206
LSKN + K+ V AF GL +P F L +LR L + N
Sbjct: 65 QLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNN 117
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRY--PRLGLYTKCFAP 62
L++NNL LP +F L RL + ++ N + C+C + WL WLK +C AP
Sbjct: 233 LSHNNLMSLPHDLFTPLHRLERVHLNHNPWHCNCDVLWLSWWLKETVPSNTTCCARCHAP 292
Query: 63 SHIKGQNILDIPEHEFKC 80
+ +KG+ I ++ + F C
Sbjct: 293 AGLKGRYIGELDQSHFTC 310
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 52/132 (39%), Gaps = 20/132 (15%)
Query: 294 SCPHPCRCADGI--VDCREKGLNKVPILLPEATTELTYM---VSIDRVDKV-----LLYS 343
SCP C C++ V C + L +VP +P T L + + R D L
Sbjct: 5 SCPAACSCSNQASRVICTRRELAEVPASIPVNTRYLNLQENSIQVIRTDTFKHLRHLEIL 64
Query: 344 YISNNFKRWTN----------RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPP 393
+S N R + L N +T +P +AF +LR + L N I +P
Sbjct: 65 QLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPS 124
Query: 394 KAFANYKRLRRM 405
AF LRR+
Sbjct: 125 YAFNRVPSLRRL 136
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 2/84 (2%)
Query: 122 LPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGL-KXXXXXXXX 180
LP T L L N +T +P +AF +LR + L N I + AF +
Sbjct: 82 LPSLNT-LELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGE 140
Query: 181 XXXXXYLPDGVFAELFRLRTLRIS 204
Y+ + F L LR L +
Sbjct: 141 LKRLEYISEAAFEGLVNLRYLNLG 164
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 72/158 (45%), Gaps = 8/158 (5%)
Query: 105 DGIVDCREKGLNKVPIL-LPEATTELRLEQ-----NDITELPPKAFANYKRLRRIDLSKN 158
+G+V+ R L + +P T +RLE+ N + + P +F LR++ L
Sbjct: 153 EGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHA 212
Query: 159 QISKVAVDAFQGLKXXXXXXXXXXXXXYLPDGVFAELFRLRTLRISENSFICDCHLSWLH 218
Q++ + +AF LK LP +F L RL + ++ N + C+C + WL
Sbjct: 213 QVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHNPWHCNCDVLWLS 272
Query: 219 RWLKRY--PRLGLYTKCFAPSHIKGQNILDIPEHEFKC 254
WLK +C AP+ +KG+ I ++ + F C
Sbjct: 273 WWLKETVPSNTTCCARCHAPAGLKGRYIGELDQSHFTC 310
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 2/113 (1%)
Query: 96 SCPHPCRCADGI--VDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRI 153
SCP C C++ V C + L +VP +P T L L++N I + F + + L +
Sbjct: 5 SCPAACSCSNQASRVICTRRELAEVPASIPVNTRYLNLQENSIQVIRTDTFKHLRHLEIL 64
Query: 154 DLSKNQISKVAVDAFQGLKXXXXXXXXXXXXXYLPDGVFAELFRLRTLRISEN 206
LSKN + K+ V AF GL +P F L +LR L + N
Sbjct: 65 QLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNN 117
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRY--PRLGLYTKCFAP 62
L++NNL LP +F L RL + ++ N + C+C + WL WLK +C AP
Sbjct: 233 LSHNNLMSLPHDLFTPLHRLERVHLNHNPWHCNCDVLWLSWWLKETVPSNTTCCARCHAP 292
Query: 63 SHIKGQNILDIPEHEFKCSGP--VEKPT 88
+ +KG+ I ++ + F C P VE PT
Sbjct: 293 AGLKGRYIGELDQSHFTCYAPVIVEPPT 320
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 52/132 (39%), Gaps = 20/132 (15%)
Query: 294 SCPHPCRCADGI--VDCREKGLNKVPILLPEATTELTYM---VSIDRVDKV-----LLYS 343
SCP C C++ V C + L +VP +P T L + + R D L
Sbjct: 5 SCPAACSCSNQASRVICTRRELAEVPASIPVNTRYLNLQENSIQVIRTDTFKHLRHLEIL 64
Query: 344 YISNNFKRWTN----------RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPP 393
+S N R + L N +T +P +AF +LR + L N I +P
Sbjct: 65 QLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPS 124
Query: 394 KAFANYKRLRRM 405
AF LRR+
Sbjct: 125 YAFNRVPSLRRL 136
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 49/112 (43%)
Query: 97 CPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLS 156
CP C C+ V+C +G VP +P TT L LE N + LP F L ++ L
Sbjct: 1 CPSRCSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLG 60
Query: 157 KNQISKVAVDAFQGLKXXXXXXXXXXXXXYLPDGVFAELFRLRTLRISENSF 208
N++ + F L LP+GVF +L +L+ L ++ N
Sbjct: 61 GNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQL 112
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 45/112 (40%), Gaps = 8/112 (7%)
Query: 295 CPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWTN 354
CP C C+ V+C +G VP +P TT L ++ L S + F T+
Sbjct: 1 CPSRCSCSGTTVECYSQGRTSVPTGIPAQTTYL-------DLETNSLKSLPNGVFDELTS 53
Query: 355 RSR-RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
++ L N + LP F L + L N + LP F +L+ +
Sbjct: 54 LTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKEL 105
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSF 34
LN N L LPDGVF +L +L+ LR+ +N
Sbjct: 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDC-HLSWLHRWLKRY 50
L N L +PDGVF L L+ + + +N + C C + +L W+ ++
Sbjct: 131 LYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKH 177
>pdb|3REZ|A Chain A, Glycoprotein Gpib Variant
pdb|3REZ|B Chain B, Glycoprotein Gpib Variant
pdb|3REZ|C Chain C, Glycoprotein Gpib Variant
pdb|3REZ|D Chain D, Glycoprotein Gpib Variant
Length = 129
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 64/161 (39%), Gaps = 51/161 (31%)
Query: 97 CPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLS 156
CP PC CA +VDC +GL +P LP TTEL L N++T +PP AF + +LR L
Sbjct: 4 CPAPCSCAGTLVDCGRRGLTALPA-LPARTTELVLTGNNLTSVPPGAFDHLPQLRTAHLG 62
Query: 157 KNQISKVAVDAFQGLKXXXXXXXXXXXXXYLPDGVFAELFRLRTLRISENSFICDCHLSW 216
N + CDC L++
Sbjct: 63 ANP------------------------------------------------WRCDCSLTY 74
Query: 217 LHRWLKRYPRLGLY--TKCFAPSHIKGQNILDIPEHEFKCS 255
L WL+ P Y +C AP ++G+ + + E E + +
Sbjct: 75 LRLWLEDRPERAPYRDLRCVAPPALRGRLLPYLAEDELRAA 115
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 4 TLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLY--TKCFA 61
L NNLT +P G F L +LRT + N + CDC L++L WL+ P Y +C A
Sbjct: 36 VLTGNNLTSVPPGAFDHLPQLRTAHLGANPWRCDCSLTYLRLWLEDRPERAPYRDLRCVA 95
Query: 62 PSHIKGQNILDIPEHEFKCS---GPVEK 86
P ++G+ + + E E + + GP+
Sbjct: 96 PPALRGRLLPYLAEDELRAACAPGPLSS 123
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 37/92 (40%), Gaps = 31/92 (33%)
Query: 295 CPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWTN 354
CP PC CA +VDC +GL +P LP TTEL
Sbjct: 4 CPAPCSCAGTLVDCGRRGLTALPA-LPARTTELV-------------------------- 36
Query: 355 RSRRLEQNDITELPPKAFANYKRLRRIRLEQN 386
L N++T +PP AF + +LR L N
Sbjct: 37 ----LTGNNLTSVPPGAFDHLPQLRTAHLGAN 64
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 80/311 (25%), Positives = 118/311 (37%), Gaps = 69/311 (22%)
Query: 95 PSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRID 154
P CP C+C +V C + GL KVP LP T L L+ N ITE+ F N K L +
Sbjct: 23 PVCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLI 82
Query: 155 LSKNQISKVAVDAFQGLKXXXXXXXXXXXXXYLPDGVFAELFRLRTLRISENSFICDCHL 214
L N+ISK++ G FA L +L L +S+N
Sbjct: 83 LINNKISKIS------------------------PGAFAPLVKLERLYLSKNQ------- 111
Query: 215 SWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEF-KCSGSSMETRSKIYREECSTD 273
LK P K L + E+E K S +++ E T+
Sbjct: 112 ------LKELPE----------KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN 155
Query: 274 FHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVS- 332
P S +E + + S R AD + +P LP + TEL +
Sbjct: 156 --PLKSSGIENGAFQGMKKLSY---IRIAD-------TNITTIPQGLPPSLTELHLDGNK 203
Query: 333 IDRVDKVLLYSYISNNFKRWTNRSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELP 392
I +VD L NN + L N I+ + + AN LR + L N + ++
Sbjct: 204 ITKVDAASLKGL--NNLAKLG-----LSFNSISAVDNGSLANTPHLRELHLNNNKLVKV- 255
Query: 393 PKAFANYKRLR 403
P A++K ++
Sbjct: 256 PGGLADHKYIQ 266
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 45/113 (39%), Gaps = 30/113 (26%)
Query: 293 PSCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRW 352
P CP C+C +V C + GL KVP LP T L
Sbjct: 23 PVCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALLD------------------------ 58
Query: 353 TNRSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
L+ N ITE+ F N K L + L N I+++ P AFA +L R+
Sbjct: 59 ------LQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL 105
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 80/311 (25%), Positives = 118/311 (37%), Gaps = 69/311 (22%)
Query: 95 PSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRID 154
P CP C+C +V C + GL KVP LP T L L+ N ITE+ F N K L +
Sbjct: 23 PVCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLI 82
Query: 155 LSKNQISKVAVDAFQGLKXXXXXXXXXXXXXYLPDGVFAELFRLRTLRISENSFICDCHL 214
L N+ISK++ G FA L +L L +S+N
Sbjct: 83 LINNKISKIS------------------------PGAFAPLVKLERLYLSKNQ------- 111
Query: 215 SWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEF-KCSGSSMETRSKIYREECSTD 273
LK P K L + E+E K S +++ E T+
Sbjct: 112 ------LKELPE----------KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN 155
Query: 274 FHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVS- 332
P S +E + + S R AD + +P LP + TEL +
Sbjct: 156 --PLKSSGIENGAFQGMKKLSY---IRIAD-------TNITTIPQGLPPSLTELHLDGNK 203
Query: 333 IDRVDKVLLYSYISNNFKRWTNRSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELP 392
I +VD L NN + L N I+ + + AN LR + L N + ++
Sbjct: 204 ITKVDAASLKGL--NNLAKLG-----LSFNSISAVDNGSLANTPHLRELHLNNNKLVKV- 255
Query: 393 PKAFANYKRLR 403
P A++K ++
Sbjct: 256 PGGLADHKYIQ 266
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 45/113 (39%), Gaps = 30/113 (26%)
Query: 293 PSCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRW 352
P CP C+C +V C + GL KVP LP T L
Sbjct: 23 PVCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALLD------------------------ 58
Query: 353 TNRSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
L+ N ITE+ F N K L + L N I+++ P AFA +L R+
Sbjct: 59 ------LQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL 105
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 56/133 (42%), Gaps = 1/133 (0%)
Query: 96 SCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDL 155
CP C C +V+C+ L VP +P L L N IT+L P F + L+++
Sbjct: 5 GCPSQCSCDQTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYF 64
Query: 156 SKNQISKVAVDAFQGLKXXXXXXXXXXXXXYLPDGVFAELFRLRTLRISENSFICDC-HL 214
+ N+++ + F L +P G F L L + + N + C+C +
Sbjct: 65 NSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDI 124
Query: 215 SWLHRWLKRYPRL 227
+L W+ + +
Sbjct: 125 MYLRNWVADHTSI 137
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 51/114 (44%), Gaps = 10/114 (8%)
Query: 294 SCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKV--LLYSYISNNFKR 351
CP C C +V+C+ L VP +P L ++ +++ K+ ++ ++ N +
Sbjct: 5 GCPSQCSCDQTLVNCQNIRLASVPAGIPTDKQRL--WLNNNQITKLEPGVFDHLVNLQQL 62
Query: 352 WTNRSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
+ N N +T +P F +L ++ L N + +P AF N K L +
Sbjct: 63 YFN------SNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHI 110
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDC-HLSWLHRWLKRYPRL 53
LN+N+L +P G F L L + + N + C+C + +L W+ + +
Sbjct: 88 LNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLRNWVADHTSI 137
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
N+N LT +P GVF +L +L L +++N
Sbjct: 64 FNSNKLTAIPTGVFDKLTQLTQLDLNDN 91
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 49/108 (45%)
Query: 101 CRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQI 160
C VDC K L +P +P T +L L+ N ++ LP KAF +LR + L+ N++
Sbjct: 14 CNNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL 73
Query: 161 SKVAVDAFQGLKXXXXXXXXXXXXXYLPDGVFAELFRLRTLRISENSF 208
+ F+ LK LP GVF +L L LR+ N
Sbjct: 74 QTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQL 121
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 1/126 (0%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKXXXXXXXXXXXXXY 186
T L L N++ LP F L+ + L NQ+ +V AF L
Sbjct: 136 TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR 195
Query: 187 LPDGVFAELFRLRTLRISENSFICDCH-LSWLHRWLKRYPRLGLYTKCFAPSHIKGQNIL 245
+P+G F L +L+ L++ EN + C C+ + ++ +WLK+ GL A G+ +L
Sbjct: 196 VPEGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKWLKKKADEGLGGVDTAGCEKGGKAVL 255
Query: 246 DIPEHE 251
+I E +
Sbjct: 256 EITEKD 261
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCH-LSWLHRWLKRYPRLGLYTKCFAPS 63
L+NN L +P+G F L +L+ L++ EN + C C+ + ++ +WLK+ GL A
Sbjct: 188 LDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKWLKKKADEGLGGVDTAGC 247
Query: 64 HIKGQNILDIPEHE 77
G+ +L+I E +
Sbjct: 248 EKGGKAVLEITEKD 261
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 50/123 (40%), Gaps = 20/123 (16%)
Query: 299 CRCADGIVDCREKGLNKVPILLPEATTELTYMV---------SIDRVDKVLLYSYISNN- 348
C VDC K L +P +P T +L + R+ K+ L Y+++N
Sbjct: 14 CNNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLL-YLNDNK 72
Query: 349 --------FKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANY 399
FK N + + N + LP F L +RL++N + LPP+ F +
Sbjct: 73 LQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSL 132
Query: 400 KRL 402
+L
Sbjct: 133 TKL 135
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
L+ N ++ LP KAF +LR + L N + LP F K L +
Sbjct: 44 LQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETL 90
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
RL++N + LPP+ F + +L + L N++ LP F L+ +
Sbjct: 115 RLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKEL 162
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 65/143 (45%), Gaps = 3/143 (2%)
Query: 115 LNKVPILLPEATT-ELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKX 173
L ++P L P EL L N ++ + P +F L+++ + ++QI + +AF L+
Sbjct: 197 LREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQS 256
Query: 174 XXXXXXXXXXXXYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYP--RLGLYT 231
LP +F L L + + N + C+C + WL W+K
Sbjct: 257 LVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCA 316
Query: 232 KCFAPSHIKGQNILDIPEHEFKC 254
+C P ++KG+ I ++ ++ F C
Sbjct: 317 RCNTPPNLKGRYIGELDQNYFTC 339
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 2/121 (1%)
Query: 88 TGECAAEPSCPHPCRCADGI--VDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFA 145
E + +CP C C++ V C K L +VP + T L L +N I + +F
Sbjct: 26 VAETGSAQTCPSVCSCSNQFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFK 85
Query: 146 NYKRLRRIDLSKNQISKVAVDAFQGLKXXXXXXXXXXXXXYLPDGVFAELFRLRTLRISE 205
+ + L + LS+N I + + AF GL +P+G F L +L+ L +
Sbjct: 86 HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRN 145
Query: 206 N 206
N
Sbjct: 146 N 146
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYP--RLGLYTKCFAP 62
L +NNLT LP +F L L + + N + C+C + WL W+K +C P
Sbjct: 262 LAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCARCNTP 321
Query: 63 SHIKGQNILDIPEHEFKCSGPV 84
++KG+ I ++ ++ F C PV
Sbjct: 322 PNLKGRYIGELDQNYFTCYAPV 343
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 128 ELRLEQNDITELPPKAFANYKRLRRIDLSK-NQISKVAVDAFQGLK 172
EL L N I +P AF LRR+DL + ++S ++ AF+GL
Sbjct: 140 ELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS 185
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 59/127 (46%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKXXXXXXXXXXXXXY 186
T L L N I+ +P +AF L R+ L +N+++ V AF+ L
Sbjct: 156 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 215
Query: 187 LPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILD 246
LP A L L+ LR+++N ++CDC L WL+++ C P + G+++
Sbjct: 216 LPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKR 275
Query: 247 IPEHEFK 253
+ ++ +
Sbjct: 276 LAANDLQ 282
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 4/111 (3%)
Query: 97 CPHPCRCADG---IVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRI 153
CP C C + C ++GL VP+ +P A+ + L N I+ +P +F + L +
Sbjct: 2 CPGACVCYNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTIL 61
Query: 154 DLSKNQISKVAVDAFQGLKXXXXXXXXXXXXXYLPD-GVFAELFRLRTLRI 203
L N ++++ AF GL D F L RL TL +
Sbjct: 62 WLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 40/79 (50%)
Query: 1 MPRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCF 60
M L NNL+ LP A L L+ LR+++N ++CDC L WL+++ C
Sbjct: 204 MTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCS 263
Query: 61 APSHIKGQNILDIPEHEFK 79
P + G+++ + ++ +
Sbjct: 264 LPQRLAGRDLKRLAANDLQ 282
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
L N I+ +P +AF L R+ L QN + + P AF + RL +
Sbjct: 160 LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 59/127 (46%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKXXXXXXXXXXXXXY 186
T L L N I+ +P +AF L R+ L +N+++ V AF+ L
Sbjct: 155 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 214
Query: 187 LPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILD 246
LP A L L+ LR+++N ++CDC L WL+++ C P + G+++
Sbjct: 215 LPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKR 274
Query: 247 IPEHEFK 253
+ ++ +
Sbjct: 275 LAANDLQ 281
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 4/111 (3%)
Query: 97 CPHPCRCADG---IVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRI 153
CP C C + C ++GL VP+ +P A+ + L N I+ +P +F + L +
Sbjct: 1 CPGACVCYNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTIL 60
Query: 154 DLSKNQISKVAVDAFQGLKXXXXXXXXXXXXXYLPD-GVFAELFRLRTLRI 203
L N ++++ AF GL D F L RL TL +
Sbjct: 61 WLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 111
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 40/79 (50%)
Query: 1 MPRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCF 60
M L NNL+ LP A L L+ LR+++N ++CDC L WL+++ C
Sbjct: 203 MTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCS 262
Query: 61 APSHIKGQNILDIPEHEFK 79
P + G+++ + ++ +
Sbjct: 263 LPQRLAGRDLKRLAANDLQ 281
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
L N I+ +P +AF L R+ L QN + + P AF + RL +
Sbjct: 159 LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 205
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 53/118 (44%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKXXXXXXXXXXXXXY 186
T L L N I +P AF L R+ L +N +++V AF+ L
Sbjct: 155 THLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSM 214
Query: 187 LPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNI 244
LP V L L+ LR+++N ++CDC L WL+++ C P + G+++
Sbjct: 215 LPAEVLVPLRSLQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCNLPQRLAGRDL 272
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%)
Query: 1 MPRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCF 60
M L NNL+ LP V L L+ LR+++N ++CDC L WL+++ C
Sbjct: 203 MTLYLFANNLSMLPAEVLVPLRSLQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCN 262
Query: 61 APSHIKGQNI 70
P + G+++
Sbjct: 263 LPQRLAGRDL 272
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 72/301 (23%), Positives = 116/301 (38%), Gaps = 42/301 (13%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCF---- 60
++ N + L D +F +L+ L++L + +N + H ++ L +L L KC
Sbjct: 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAF--SGLNSLEQLTL-EKCNLTSI 167
Query: 61 ---APSHIKGQ--------NILDIPEHEFKCSGPVEK------PTGECAAEPSCPHPCRC 103
A SH+ G NI I ++ FK ++ P + P+C +
Sbjct: 168 PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMT-PNCLYGLNL 226
Query: 104 AD-GIVDCREKGLNKVPILLPEATTELR---LEQNDITELPPKAFANYKRLRRIDLSKNQ 159
I C L VP L LR L N I+ + RL+ I L Q
Sbjct: 227 TSLSITHC---NLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ 283
Query: 160 ISKVAVDAFQGLKXXXXXXXXXXXXXYLPDGVFAELFRLRTLRISENSFICDCHLSWL-- 217
++ V AF+GL L + VF + L TL + N CDC L W+
Sbjct: 284 LAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFR 343
Query: 218 HRWLKRYPRLGLYTKCFAPSHIKGQNILDIPE----HEFKCSGSSMETR--SKIYREECS 271
RW + R C P ++G+ D P+ + F C + + R +++ +E
Sbjct: 344 RRWRLNFNR--QQPTCATPEFVQGKEFKDFPDVLLPNYFTCRRARIRDRKAQQVFVDEGH 401
Query: 272 T 272
T
Sbjct: 402 T 402
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 50/116 (43%), Gaps = 2/116 (1%)
Query: 96 SCPHPCRCA--DGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRI 153
CP C C+ D V C K VP +P T L L +N I L FA++ L +
Sbjct: 2 GCPPRCECSAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEEL 61
Query: 154 DLSKNQISKVAVDAFQGLKXXXXXXXXXXXXXYLPDGVFAELFRLRTLRISENSFI 209
+L++N +S V AF L +P GVF L L L ISEN +
Sbjct: 62 ELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV 117
Score = 31.6 bits (70), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 22/104 (21%), Positives = 52/104 (50%), Gaps = 6/104 (5%)
Query: 303 DGIVDCREKGL--NKVPILLPEATTELTYMVSIDRVDK--VLLYSYISNNFKRWTNRSRR 358
+ + + R GL N++ ++ T L+ + +D + V+L Y+ + + +S
Sbjct: 77 NNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDL--YNLKSLE 134
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRL 402
+ ND+ + +AF+ L ++ LE+ ++T +P +A ++ L
Sbjct: 135 VGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGL 178
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Query: 314 NKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWTNRSRRL--EQNDITELPPKA 371
NK+ ILL +L + S++ D L+Y IS+ N +L E+ ++T +P +A
Sbjct: 114 NKIVILLDYMFQDLYNLKSLEVGDNDLVY--ISHRAFSGLNSLEQLTLEKCNLTSIPTEA 171
Query: 372 FANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
++ L +RL +I + +F RL+ +
Sbjct: 172 LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVL 205
>pdb|3RFE|A Chain A, Crystal Structure Of Glycoprotein Gpib Ectodomain
pdb|3RFE|B Chain B, Crystal Structure Of Glycoprotein Gpib Ectodomain
Length = 130
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 59/163 (36%), Gaps = 52/163 (31%)
Query: 97 CPHPCRCADGIVDCREKGLN--KVPILLPEATTELRLEQNDITELPPKAFANYKRLRRID 154
CP PC CA +VDC +GL +P P TTEL L N++T LPP
Sbjct: 2 CPAPCSCAGTLVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLL---------- 51
Query: 155 LSKNQISKVAVDAFQGLKXXXXXXXXXXXXXYLPDGVFAELFRLRTLRISENSFICDCHL 214
DA L+ T + N + CDC L
Sbjct: 52 -----------DALPALR---------------------------TAHLGANPWRCDCRL 73
Query: 215 SWLHRWLKRYPRLGLY--TKCFAPSHIKGQNILDIPEHEFKCS 255
L WL P Y +C AP ++G+ + + E E + +
Sbjct: 74 VPLRAWLAGRPERAPYRDLRCVAPPALRGRLLPYLAEDELRAA 116
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 4 TLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLY--TKCFA 61
L NNLT LP G+ L LRT + N + CDC L L WL P Y +C A
Sbjct: 37 VLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPERAPYRDLRCVA 96
Query: 62 PSHIKGQNILDIPEHEFKCS 81
P ++G+ + + E E + +
Sbjct: 97 PPALRGRLLPYLAEDELRAA 116
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 32/94 (34%), Gaps = 32/94 (34%)
Query: 295 CPHPCRCADGIVDCREKGLN--KVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRW 352
CP PC CA +VDC +GL +P P TTEL
Sbjct: 2 CPAPCSCAGTLVDCGRRGLTWASLPTAFPVDTTELV------------------------ 37
Query: 353 TNRSRRLEQNDITELPPKAFANYKRLRRIRLEQN 386
L N++T LPP LR L N
Sbjct: 38 ------LTGNNLTALPPGLLDALPALRTAHLGAN 65
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 33/65 (50%)
Query: 97 CPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLS 156
CP C C+ + C KGL VP +P + T L LE N + LP F +L ++ LS
Sbjct: 1 CPSRCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLS 60
Query: 157 KNQIS 161
N +S
Sbjct: 61 SNGLS 65
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 72/281 (25%), Positives = 112/281 (39%), Gaps = 51/281 (18%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN--SFICDCHLSWLHRWLKRYPRLGLYTKCFAP 62
L +N L LP GVF +L +L L +S N SF C S +Y L
Sbjct: 35 LESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS 94
Query: 63 SHIKGQNILDIPEH-EFKCSGPVEKPTGECAA----------EPSCPHPCRCADGIVDCR 111
S+ G L+ EH +F+ S K E + + S H +GI +
Sbjct: 95 SNFLG---LEQLEHLDFQHSNL--KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-- 147
Query: 112 EKGLNKVPIL-----------LPEATTELR------LEQNDITELPPKAFANYKRLRRID 154
GL+ + +L LP+ TELR L Q + +L P AF + L+ ++
Sbjct: 148 --GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205
Query: 155 LSKNQISKVAVDAFQGLKXXXXXXXXXXXXXYLPDGVFAEL----FRLRTLRISENSFIC 210
+S N ++D F K ++ EL L L +++N F C
Sbjct: 206 MSHNNF--FSLDTFP-YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262
Query: 211 DC-HLSWLHRWLKRYPRLGLYT---KCFAPSHIKGQNILDI 247
C H S+L +W+K +L + +C PS +G +L +
Sbjct: 263 TCEHQSFL-QWIKDQRQLLVEVERMECATPSDKQGMPVLSL 302
Score = 35.0 bits (79), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 32/95 (33%), Gaps = 30/95 (31%)
Query: 295 CPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWTN 354
CP C C+ + C KGL VP +P + T L
Sbjct: 1 CPSRCSCSGTEIRCNSKGLTSVPTGIPSSATRL--------------------------- 33
Query: 355 RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDIT 389
LE N + LP F +L ++ L N ++
Sbjct: 34 ---ELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS 65
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 46/103 (44%)
Query: 97 CPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLS 156
CP C C +V C + GL VP + TT L L+ NDI+EL F + L + L
Sbjct: 27 CPFGCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLV 86
Query: 157 KNQISKVAVDAFQGLKXXXXXXXXXXXXXYLPDGVFAELFRLR 199
N+ISK+ AF L+ +P + + L LR
Sbjct: 87 NNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELR 129
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 54/110 (49%), Gaps = 8/110 (7%)
Query: 295 CPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWTN 354
CP C C +V C + GL VP + TT ++ + D + ++FK +
Sbjct: 27 CPFGCHCHLRVVQCSDLGLKAVPKEISPDTT----LLDLQNND---ISELRKDDFKGLQH 79
Query: 355 -RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLR 403
+ L N I+++ KAF+ ++L+++ + +N + E+PP ++ LR
Sbjct: 80 LYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELR 129
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 25/52 (48%)
Query: 112 EKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKV 163
E L +P LPE EL L+ N I + + Y +L R+ L NQI +
Sbjct: 181 EAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI 232
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 115 LNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVD--AFQGLK 172
L ++P LP + ELR+ N I ++P F+ + + I++ N + + AF GLK
Sbjct: 114 LVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK 173
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 2/110 (1%)
Query: 101 CRCADGI--VDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKN 158
C C +G VDC+ K L+ VP +P T +L L+ + L F +L ++L N
Sbjct: 10 CTCNEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN 69
Query: 159 QISKVAVDAFQGLKXXXXXXXXXXXXXYLPDGVFAELFRLRTLRISENSF 208
Q+ ++ F L LP GVF L +L L + N
Sbjct: 70 QLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQL 119
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 1/97 (1%)
Query: 128 ELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKXXXXXXXXXXXXXYL 187
+L L N + LP F +L+ + L+ NQ+ + AF L +
Sbjct: 111 KLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170
Query: 188 PDGVFAELFRLRTLRISENSFICD-CHLSWLHRWLKR 223
P G F L +L+T+ + N F C C + +L +W++
Sbjct: 171 PHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIRE 207
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 10/110 (9%)
Query: 299 CRCADGI--VDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWTNRS 356
C C +G VDC+ K L+ VP +P T +L + L + F+ T +
Sbjct: 10 CTCNEGKKEVDCQGKSLDSVPSGIPADTEKL-------DLQSTGLATLSDATFRGLTKLT 62
Query: 357 -RRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
L+ N + L F + L + L N + LP F + +L ++
Sbjct: 63 WLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKL 112
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 4 TLNNNNLTYLPDGVFAELFRLRTLRISENSFICD-CHLSWLHRWLKR 49
+L+ N L +P G F L +L+T+ + N F C C + +L +W++
Sbjct: 161 SLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIRE 207
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 7/104 (6%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSH 64
LN N L +P G F +L L+TL +S N H ++ L + + L+ F S
Sbjct: 138 LNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAF--DRLGKLQTITLFGNQFDCSR 195
Query: 65 IKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIV 108
+ IL + + + S V+ TG+ E P C+DG V
Sbjct: 196 CE---ILYLSQWIRENSNKVKDGTGQNLHES--PDGVTCSDGKV 234
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSF 34
L N L LP GVF L +L+ LR++ N
Sbjct: 114 LGGNQLKSLPSGVFDRLTKLKELRLNTNQL 143
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 2/110 (1%)
Query: 101 CRCADGI--VDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKN 158
C C +G VDC+ K L+ VP +P T +L L+ + L F +L ++L N
Sbjct: 10 CTCNEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN 69
Query: 159 QISKVAVDAFQGLKXXXXXXXXXXXXXYLPDGVFAELFRLRTLRISENSF 208
Q+ ++ F L LP GVF L +L L + N
Sbjct: 70 QLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQL 119
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 1/97 (1%)
Query: 128 ELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKXXXXXXXXXXXXXYL 187
+L L N + LP F +L+ + L+ NQ+ + AF L +
Sbjct: 111 KLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170
Query: 188 PDGVFAELFRLRTLRISENSFICD-CHLSWLHRWLKR 223
P G F L +L+T+ + N F C C +L +W++
Sbjct: 171 PHGAFDRLGKLQTITLFGNQFDCSRCETLYLSQWIRE 207
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 64/178 (35%), Gaps = 31/178 (17%)
Query: 129 LRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKXXXXXXXXXXXXXYLP 188
L L N + LP F + +L ++ L NQ+ + F L +P
Sbjct: 88 LGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP 147
Query: 189 DGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIP 248
G F +L L+TL +S N H + RLG K Q I +
Sbjct: 148 AGAFDKLTNLQTLSLSTNQLQSVPH--------GAFDRLG-----------KLQTI-TLF 187
Query: 249 EHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIV 306
++F CS S+ RE NS V+ TG+ E P C+DG V
Sbjct: 188 GNQFDCSRCETLYLSQWIRE---------NSNKVKDGTGQNLHES--PDGVTCSDGKV 234
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 10/110 (9%)
Query: 299 CRCADGI--VDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWTNRS 356
C C +G VDC+ K L+ VP +P T +L + L + F+ T +
Sbjct: 10 CTCNEGKKEVDCQGKSLDSVPSGIPADTEKL-------DLQSTGLATLSDATFRGLTKLT 62
Query: 357 -RRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
L+ N + L F + L + L N + LP F + +L ++
Sbjct: 63 WLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKL 112
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 4 TLNNNNLTYLPDGVFAELFRLRTLRISENSFICD-CHLSWLHRWLKR 49
+L+ N L +P G F L +L+T+ + N F C C +L +W++
Sbjct: 161 SLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCETLYLSQWIRE 207
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 7/104 (6%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSH 64
LN N L +P G F +L L+TL +S N H ++ L + + L+ F S
Sbjct: 138 LNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAF--DRLGKLQTITLFGNQFDCSR 195
Query: 65 IKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIV 108
+ L + + + S V+ TG+ E P C+DG V
Sbjct: 196 CE---TLYLSQWIRENSNKVKDGTGQNLHES--PDGVTCSDGKV 234
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSF 34
L N L LP GVF L +L+ LR++ N
Sbjct: 114 LGGNQLKSLPSGVFDRLTKLKELRLNTNQL 143
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Query: 128 ELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKXXXXXXXXXXXXXYL 187
+L L QN + + + F N +L +DLS N I + +F GL +
Sbjct: 327 KLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSV 386
Query: 188 PDGVFAELFRLRTLRISENSFICDC-HLSWLHRWLKR 223
PDG+F L L+ + + N + C C + +L RWL +
Sbjct: 387 PDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 423
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDC-HLSWLHRWLKR 49
L+ N L +PDG+F L L+ + + N + C C + +L RWL +
Sbjct: 378 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 423
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 36/76 (47%)
Query: 131 LEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKXXXXXXXXXXXXXYLPDG 190
L ++ I L F+++ L ++ L++N+I+K+ +AF GL +
Sbjct: 282 LSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSR 341
Query: 191 VFAELFRLRTLRISEN 206
+F L +L L +S N
Sbjct: 342 MFENLDKLEVLDLSYN 357
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 336 VDKVLLYSYISNNFKRWTNRSR-RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPK 394
+ K +++ + + F +T+ + L QN+I ++ AF L ++ L QN + + +
Sbjct: 282 LSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSR 341
Query: 395 AFANYKRLRRM 405
F N +L +
Sbjct: 342 MFENLDKLEVL 352
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 1/102 (0%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKXXXXXXXXXXXXXY 186
T L L N + LP F L R+DL NQ+ + F L
Sbjct: 136 TYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKS 195
Query: 187 LPDGVFAELFRLRTLRISENSFICDCH-LSWLHRWLKRYPRL 227
+PDGVF L L + + N + C C + +L RW+ ++P L
Sbjct: 196 VPDGVFDRLTSLTHIWLLNNPWDCACSDILYLSRWISQHPGL 237
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 17/99 (17%)
Query: 4 TLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCH-LSWLHRWLKRYPRLGLYTKCFAP 62
+LN+N L +PDGVF L L + + N + C C + +L RW+ ++P L F
Sbjct: 187 SLNDNQLKSVPDGVFDRLTSLTHIWLLNNPWDCACSDILYLSRWISQHPGL-----VFG- 240
Query: 63 SHIKGQNILDIPEHEFKCSG---PVEKPTGECAAEPSCP 98
L++ +CSG PV T + CP
Sbjct: 241 -------YLNLDPDSARCSGTNTPVRAVTEASTSPSKCP 272
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSF------ICDCHLSWLHRWLKRYP 51
L+NN L LP+GVF +L +L+ L +++N + D S H WL P
Sbjct: 164 LDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNNP 216
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 30/82 (36%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKXXXXXXXXXXXXXY 186
T L L N + LP F L+ + L +NQ+ + F L
Sbjct: 88 TYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQS 147
Query: 187 LPDGVFAELFRLRTLRISENSF 208
LP GVF +L L L + N
Sbjct: 148 LPKGVFDKLTNLTRLDLDNNQL 169
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 131 LEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKXXXXXXXXXXXXXYLPDG 190
L ++ I L F+++ L ++ L++N+I+K+ +AF GL +PDG
Sbjct: 282 LSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLKSVPDG 341
Query: 191 VFAELFRLRTLRISENSFICDC-HLSWLHRWLKR 223
+F L L+ + + N + C C + +L RWL +
Sbjct: 342 IFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 375
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDC-HLSWLHRWLKR 49
L+ N L +PDG+F L L+ + + N + C C + +L RWL +
Sbjct: 330 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 375
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 54/140 (38%), Gaps = 13/140 (9%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKXXXXXXXXXXXXXY 186
T L L N + LP F L +DLS NQ+ + F L
Sbjct: 136 TYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS 195
Query: 187 LPDGVFAELFRLRTLRISENSFICDC-HLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNIL 245
+PDGVF L L+ + + +N + C C + +L W+ ++ S + +
Sbjct: 196 VPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKH------------SGVVRNSAG 243
Query: 246 DIPEHEFKCSGSSMETRSKI 265
+ KCSGS RS I
Sbjct: 244 SVAPDSAKCSGSGKPVRSII 263
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 31/82 (37%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKXXXXXXXXXXXXXY 186
T L L N + LP F L+ + L +NQ+ + F L
Sbjct: 88 TYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQS 147
Query: 187 LPDGVFAELFRLRTLRISENSF 208
LP GVF +L L L +S N
Sbjct: 148 LPKGVFDKLTNLTELDLSYNQL 169
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDC-HLSWLHRWLKRY 50
L N L +PDGVF L L+ + + +N + C C + +L W+ ++
Sbjct: 188 LYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKH 234
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 5/97 (5%)
Query: 310 EKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWTNRSR-RLEQNDITELP 368
E L +P + + T LTY+ + L S F + TN + L N + LP
Sbjct: 118 ENQLQSLPDGVFDKLTNLTYL----NLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP 173
Query: 369 PKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
F +L+ +RL QN + +P F L+ +
Sbjct: 174 EGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI 210
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 42/106 (39%), Gaps = 22/106 (20%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSF------ICDCHLSWLHRWLKRYPRLGLYTK 58
L+ N L LP+GVF +L +L+ LR+ +N + D S + WL P
Sbjct: 164 LSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW-----D 218
Query: 59 CFAPSHIKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCA 104
C P I + E K SG V G A P +C+
Sbjct: 219 CTCPG------IRYLSEWINKHSGVVRNSAGSVA-----PDSAKCS 253
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 43/115 (37%)
Query: 93 AEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRR 152
S C + + DC L +VP LP T L L N + LP F Y +L
Sbjct: 4 GSASSTTKCTVSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTS 63
Query: 153 IDLSKNQISKVAVDAFQGLKXXXXXXXXXXXXXYLPDGVFAELFRLRTLRISENS 207
+D+ N ISK+ + Q L L D FA L L + NS
Sbjct: 64 LDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 118
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 44/119 (36%), Gaps = 6/119 (5%)
Query: 129 LRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKXXXXXXXXXXXXXYLP 188
L LE N E+P + F + L+ IDL N ++ + F +
Sbjct: 551 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 610
Query: 189 DGVFAELFR-LRTLRISENSFICDCH-LSWLHRWLK----RYPRLGLYTKCFAPSHIKG 241
VF FR L L + N F C C ++W W+ P L + C P H G
Sbjct: 611 KKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHG 669
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 8/108 (7%)
Query: 291 AEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFK 350
S C + + DC L +VP LP T L + L + NF
Sbjct: 4 GSASSTTKCTVSHEVADCSHLKLTQVPDDLPTNITVL-------NLTHNQLRRLPAANFT 56
Query: 351 RWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFA 397
R++ S + N I++L P+ L+ + L+ N++++L K FA
Sbjct: 57 RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFA 104
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
LE N E+P + F + L+ I L N++ LP F N L+ +
Sbjct: 552 NLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSL 599
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 43/112 (38%)
Query: 96 SCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDL 155
S C + + DC L +VP LP T L L N + LP F Y +L +D+
Sbjct: 2 SSTTKCTVSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDV 61
Query: 156 SKNQISKVAVDAFQGLKXXXXXXXXXXXXXYLPDGVFAELFRLRTLRISENS 207
N ISK+ + Q L L D FA L L + NS
Sbjct: 62 GFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 113
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 44/119 (36%), Gaps = 6/119 (5%)
Query: 129 LRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKXXXXXXXXXXXXXYLP 188
L LE N E+P + F + L+ IDL N ++ + F +
Sbjct: 546 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 605
Query: 189 DGVFAELFR-LRTLRISENSFICDCH-LSWLHRWLK----RYPRLGLYTKCFAPSHIKG 241
VF FR L L + N F C C ++W W+ P L + C P H G
Sbjct: 606 KKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHG 664
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 50/105 (47%), Gaps = 8/105 (7%)
Query: 294 SCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWT 353
S C + + DC L +VP LP T L ++ +++ ++ + NF R++
Sbjct: 2 SSTTKCTVSHEVADCSHLKLTQVPDDLPTNITVLN--LTHNQLRRL-----PAANFTRYS 54
Query: 354 N-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFA 397
S + N I++L P+ L+ + L+ N++++L K FA
Sbjct: 55 QLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFA 99
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
LE N E+P + F + L+ I L N++ LP F N L+ +
Sbjct: 547 NLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSL 594
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 42/107 (39%)
Query: 101 CRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQI 160
C + + DC L +VP LP T L L N + LP F Y +L +D+ N I
Sbjct: 2 CTVSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61
Query: 161 SKVAVDAFQGLKXXXXXXXXXXXXXYLPDGVFAELFRLRTLRISENS 207
SK+ + Q L L D FA L L + NS
Sbjct: 62 SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 108
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 44/119 (36%), Gaps = 6/119 (5%)
Query: 129 LRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKXXXXXXXXXXXXXYLP 188
L LE N E+P + F + L+ IDL N ++ + F +
Sbjct: 541 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 600
Query: 189 DGVFAELFR-LRTLRISENSFICDCH-LSWLHRWLK----RYPRLGLYTKCFAPSHIKG 241
VF FR L L + N F C C ++W W+ P L + C P H G
Sbjct: 601 KKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHG 659
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 49/100 (49%), Gaps = 8/100 (8%)
Query: 299 CRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWTN-RSR 357
C + + DC L +VP LP T L ++ +++ ++ + NF R++ S
Sbjct: 2 CTVSHEVADCSHLKLTQVPDDLPTNITVLN--LTHNQLRRL-----PAANFTRYSQLTSL 54
Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFA 397
+ N I++L P+ L+ + L+ N++++L K FA
Sbjct: 55 DVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFA 94
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
LE N E+P + F + L+ I L N++ LP F N L+ +
Sbjct: 542 NLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSL 589
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Query: 128 ELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKXXXXXXXXXXXXXYL 187
EL L+ N++ LPP +L ++ L+ NQ++++ GL+ +
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 188 PDGVFAELFRLRTLRISENSFICDCHLSWLHRWLK 222
P G F L + N ++C+C + + RWL+
Sbjct: 188 PKGFFGS-HLLPFAFLHGNPWLCNCEILYFRRWLQ 221
Score = 35.4 bits (80), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%)
Query: 108 VDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDA 167
V+C ++ L +P LP+ TT L L +N + Y RL +++L + +++K+ VD
Sbjct: 15 VNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG 74
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 23/68 (33%)
Query: 4 TLNNNNLTYLPDGVFAELFRLRTLRISENS-----------------------FICDCHL 40
+L NN LT LP G+ L L TL + ENS ++C+C +
Sbjct: 154 SLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEI 213
Query: 41 SWLHRWLK 48
+ RWL+
Sbjct: 214 LYFRRWLQ 221
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 6/103 (5%)
Query: 304 GIVDCREKGLNKVPILLPEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTNRSRRLEQN 362
G +D L +P LL + LT + VS +R+ + L + + L+ N
Sbjct: 80 GTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRG----LGELQELYLKGN 134
Query: 363 DITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
++ LPP +L ++ L N +TELP + L +
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTL 177
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Query: 128 ELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKXXXXXXXXXXXXXYL 187
EL L+ N++ LPP +L ++ L+ NQ++++ GL+ +
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 188 PDGVFAELFRLRTLRISENSFICDCHLSWLHRWLK 222
P G F L + N ++C+C + + RWL+
Sbjct: 188 PKGFFGS-HLLPFAFLHGNPWLCNCEILYFRRWLQ 221
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%)
Query: 108 VDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDA 167
V+C ++ L +P LP+ TT L L +N + Y RL +++L + +++K+ VD
Sbjct: 15 VNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG 74
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 23/68 (33%)
Query: 4 TLNNNNLTYLPDGVFAELFRLRTLRISENS-----------------------FICDCHL 40
+L NN LT LP G+ L L TL + ENS ++C+C +
Sbjct: 154 SLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEI 213
Query: 41 SWLHRWLK 48
+ RWL+
Sbjct: 214 LYFRRWLQ 221
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 6/103 (5%)
Query: 304 GIVDCREKGLNKVPILLPEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTNRSRRLEQN 362
G +D L +P LL + LT + VS +R+ + L + + L+ N
Sbjct: 80 GTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRG----LGELQELYLKGN 134
Query: 363 DITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
++ LPP +L ++ L N +TELP + L +
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTL 177
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Query: 128 ELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKXXXXXXXXXXXXXYL 187
EL L+ N++ LPP +L ++ L+ NQ++++ GL+ +
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 188 PDGVFAELFRLRTLRISENSFICDCHLSWLHRWLK 222
P G F L + N ++C+C + + RWL+
Sbjct: 188 PKGFFGS-HLLPFAFLHGNPWLCNCEILYFRRWLQ 221
Score = 35.0 bits (79), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%)
Query: 108 VDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDA 167
V+C ++ L +P LP+ TT L L +N + Y RL +++L + +++K+ VD
Sbjct: 15 VNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG 74
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 23/68 (33%)
Query: 4 TLNNNNLTYLPDGVFAELFRLRTLRISENS-----------------------FICDCHL 40
+L NN LT LP G+ L L TL + ENS ++C+C +
Sbjct: 154 SLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEI 213
Query: 41 SWLHRWLK 48
+ RWL+
Sbjct: 214 LYFRRWLQ 221
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
L+ N++ LPP +L ++ L N +TELP + L +
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTL 177
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Query: 128 ELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKXXXXXXXXXXXXXYL 187
EL L+ N++ LPP +L ++ L+ NQ++++ GL+ +
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 188 PDGVFAELFRLRTLRISENSFICDCHLSWLHRWLK 222
P G F L + N ++C+C + + RWL+
Sbjct: 188 PKGFFGS-HLLPFAFLHGNPWLCNCEILYFRRWLQ 221
Score = 35.0 bits (79), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%)
Query: 108 VDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDA 167
V+C ++ L +P LP+ TT L L +N + Y RL +++L + +++K+ VD
Sbjct: 15 VNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG 74
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 23/68 (33%)
Query: 4 TLNNNNLTYLPDGVFAELFRLRTLRISENS-----------------------FICDCHL 40
+L NN LT LP G+ L L TL + ENS ++C+C +
Sbjct: 154 SLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEI 213
Query: 41 SWLHRWLK 48
+ RWL+
Sbjct: 214 LYFRRWLQ 221
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
L+ N++ LPP +L ++ L N +TELP + L +
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTL 177
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 7/119 (5%)
Query: 96 SCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDIT----ELPPKAFANYKRLR 151
SCP C CA I+ C ++ L VP LP T L L N+++ E P N L
Sbjct: 11 SCPANCLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTN---LH 67
Query: 152 RIDLSKNQISKVAVDAFQGLKXXXXXXXXXXXXXYLPDGVFAELFRLRTLRISENSFIC 210
+ LS N ++ ++ +AF + L + +F++L L L + N +
Sbjct: 68 SLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVV 126
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 46/118 (38%), Gaps = 17/118 (14%)
Query: 294 SCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWT 353
SCP C CA I+ C ++ L VP LP T L L ++ +S WT
Sbjct: 11 SCPANCLCASNILSCSKQQLPNVPQSLPSYTALLD-----------LSHNNLSRLRAEWT 59
Query: 354 ------NRSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
S L N + + +AF LR + L N + L F++ + L +
Sbjct: 60 PTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVL 117
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 2/97 (2%)
Query: 129 LRLEQNDITE-LPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKXXXXXXXXXXXXXYL 187
L++ N E P F + L +DLS+ Q+ +++ AF L +
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV 509
Query: 188 PDGVFAELFRLRTLRISENSFICDC-HLSWLHRWLKR 223
PDG+F L L+ + + N + C C + +L RWL +
Sbjct: 510 PDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 546
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 41/96 (42%)
Query: 110 CREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQ 169
C E K+P LP +T L L N + L +F ++ L+ +DLS+ +I + A+Q
Sbjct: 14 CMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ 73
Query: 170 GLKXXXXXXXXXXXXXYLPDGVFAELFRLRTLRISE 205
L L G F+ L L+ L E
Sbjct: 74 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 7 NNNLTYLPDGVFAELFRLRTLRISENSFICDC-HLSWLHRWLKR 49
+N L +PDG+F L L+ + + N + C C + +L RWL +
Sbjct: 503 SNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 546
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 58/115 (50%), Gaps = 9/115 (7%)
Query: 294 SCPH-PCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRW 352
C H C C++ + C+E + ++P LP EL ++++ RV + +S + K
Sbjct: 1 GCHHRICHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEK-- 58
Query: 353 TNRSRRLEQNDITE-LPPKAFANYKRLRRIRLEQ-NDITELPPKAFANYKRLRRM 405
+ QND+ E + F+N +L IR+E+ N++ + P+AF N L+ +
Sbjct: 59 ----IEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 3/112 (2%)
Query: 96 SCPH-PCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRID 154
C H C C++ + C+E + ++P LP ELR + + AF+ + L +I+
Sbjct: 1 GCHHRICHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIE 60
Query: 155 LSKNQISKVA-VDAFQGL-KXXXXXXXXXXXXXYLPDGVFAELFRLRTLRIS 204
+S+N + +V D F L K Y+ F L L+ L IS
Sbjct: 61 ISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLIS 112
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 58/115 (50%), Gaps = 9/115 (7%)
Query: 294 SCPH-PCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRW 352
C H C C++ + C+E + ++P LP EL ++++ RV + +S + K
Sbjct: 1 GCHHRICHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEK-- 58
Query: 353 TNRSRRLEQNDITE-LPPKAFANYKRLRRIRLEQ-NDITELPPKAFANYKRLRRM 405
+ QND+ E + F+N +L IR+E+ N++ + P+AF N L+ +
Sbjct: 59 ----IEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 3/112 (2%)
Query: 96 SCPH-PCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRID 154
C H C C++ + C+E + ++P LP ELR + + AF+ + L +I+
Sbjct: 1 GCHHRICHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIE 60
Query: 155 LSKNQISKVA-VDAFQGL-KXXXXXXXXXXXXXYLPDGVFAELFRLRTLRIS 204
+S+N + +V D F L K Y+ F L L+ L IS
Sbjct: 61 ISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLIS 112
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
Query: 128 ELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKXXXXXXXXXXXXXYL 187
EL L+ N++ LPP +L ++ L+ N ++++ GL+ +
Sbjct: 129 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 188
Query: 188 PDGVFAELFRLRTLRISENSFICDCHLSWLHRWLK 222
P G F L + N ++C+C + + RWL+
Sbjct: 189 PKGFFGS-HLLPFAFLHGNPWLCNCEILYFRRWLQ 222
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 98 PHPC----RCADGI-VDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRR 152
PHP + A + V+C ++ L +P LP+ TT L L +N + Y RL +
Sbjct: 1 PHPICEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQ 60
Query: 153 IDLSKNQISKVAVDA 167
++L + +++K+ VD
Sbjct: 61 LNLDRCELTKLQVDG 75
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 23/68 (33%)
Query: 4 TLNNNNLTYLPDGVFAELFRLRTLRISENS-----------------------FICDCHL 40
+L NNNLT LP G+ L L TL + ENS ++C+C +
Sbjct: 155 SLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEI 214
Query: 41 SWLHRWLK 48
+ RWL+
Sbjct: 215 LYFRRWLQ 222
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 6/103 (5%)
Query: 304 GIVDCREKGLNKVPILLPEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTNRSRRLEQN 362
G +D L +P LL + LT + VS +R+ + L + + L+ N
Sbjct: 81 GTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRG----LGELQELYLKGN 135
Query: 363 DITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
++ LPP +L ++ L N++TELP + L +
Sbjct: 136 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 178
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
Query: 128 ELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKXXXXXXXXXXXXXYL 187
EL L+ N++ LPP +L ++ L+ N ++++ GL+ +
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 188 PDGVFAELFRLRTLRISENSFICDCHLSWLHRWLK 222
P G F L + N ++C+C + + RWL+
Sbjct: 188 PKGFFGS-HLLPFAFLHGNPWLCNCEILYFRRWLQ 221
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%)
Query: 108 VDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDA 167
V+C ++ L +P LP+ TT L L +N + Y RL +++L + +++K+ VD
Sbjct: 15 VNCDKRDLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG 74
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 23/68 (33%)
Query: 4 TLNNNNLTYLPDGVFAELFRLRTLRISENS-----------------------FICDCHL 40
+L NNNLT LP G+ L L TL + ENS ++C+C +
Sbjct: 154 SLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEI 213
Query: 41 SWLHRWLK 48
+ RWL+
Sbjct: 214 LYFRRWLQ 221
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
L+ N++ LPP +L ++ L N++TELP + L +
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
Query: 128 ELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKXXXXXXXXXXXXXYL 187
EL L+ N++ LPP +L ++ L+ N ++++ GL+ +
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 188 PDGVFAELFRLRTLRISENSFICDCHLSWLHRWLK 222
P G F L + N ++C+C + + RWL+
Sbjct: 188 PKGFFGS-HLLPFAFLHGNPWLCNCEILYFRRWLQ 221
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%)
Query: 108 VDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDA 167
V+C ++ L +P LP+ TT L L +N + Y RL +++L + +++K+ VD
Sbjct: 15 VNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG 74
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 23/68 (33%)
Query: 4 TLNNNNLTYLPDGVFAELFRLRTLRISENS-----------------------FICDCHL 40
+L NNNLT LP G+ L L TL + ENS ++C+C +
Sbjct: 154 SLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEI 213
Query: 41 SWLHRWLK 48
+ RWL+
Sbjct: 214 LYFRRWLQ 221
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
L+ N++ LPP +L ++ L N++TELP + L +
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
Query: 128 ELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKXXXXXXXXXXXXXYL 187
EL L+ N++ LPP +L ++ L+ N ++++ GL+ +
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 188 PDGVFAELFRLRTLRISENSFICDCHLSWLHRWLK 222
P G F L + N ++C+C + + RWL+
Sbjct: 188 PKGFFGS-HLLPFAFLHGNPWLCNCEILYFRRWLQ 221
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%)
Query: 108 VDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDA 167
V+C ++ L +P LP+ TT L L +N + Y RL +++L + +++K+ VD
Sbjct: 15 VNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG 74
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 23/68 (33%)
Query: 4 TLNNNNLTYLPDGVFAELFRLRTLRISENS-----------------------FICDCHL 40
+L NNNLT LP G+ L L TL + ENS ++C+C +
Sbjct: 154 SLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEI 213
Query: 41 SWLHRWLK 48
+ RWL+
Sbjct: 214 LYFRRWLQ 221
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
L+ N++ LPP +L ++ L N++TELP + L +
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
Query: 128 ELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKXXXXXXXXXXXXXYL 187
EL L+ N++ LPP +L ++ L+ N ++++ GL+ +
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 188 PDGVFAELFRLRTLRISENSFICDCHLSWLHRWLK 222
P G F L + N ++C+C + + RWL+
Sbjct: 188 PKGFFGS-HLLPFAFLHGNPWLCNCEILYFRRWLQ 221
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%)
Query: 108 VDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDA 167
V+C ++ L +P LP+ TT L L +N + Y RL +++L + +++K+ VD
Sbjct: 15 VNCDKRDLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG 74
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 23/68 (33%)
Query: 4 TLNNNNLTYLPDGVFAELFRLRTLRISENS-----------------------FICDCHL 40
+L NN+LT LP G+ L L TL + ENS ++C+C +
Sbjct: 154 SLANNDLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEI 213
Query: 41 SWLHRWLK 48
+ RWL+
Sbjct: 214 LYFRRWLQ 221
Score = 31.6 bits (70), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
L+ N++ LPP +L ++ L ND+TELP + L +
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTL 177
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
Query: 128 ELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKXXXXXXXXXXXXXYL 187
EL L+ N++ LPP +L ++ L+ N ++++ GL+ +
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 188 PDGVFAELFRLRTLRISENSFICDCHLSWLHRWLK 222
P G F L + N ++C+C + + RWL+
Sbjct: 188 PKGFFGS-HLLPFAFLHGNPWLCNCEILYFRRWLQ 221
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%)
Query: 108 VDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDA 167
V+C ++ L +P LP+ TT L L +N + Y RL +++L + +++K+ VD
Sbjct: 15 VNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG 74
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 23/68 (33%)
Query: 4 TLNNNNLTYLPDGVFAELFRLRTLRISENS-----------------------FICDCHL 40
+L NNNLT LP G+ L L TL + ENS ++C+C +
Sbjct: 154 SLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEI 213
Query: 41 SWLHRWLK 48
+ RWL+
Sbjct: 214 LYFRRWLQ 221
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
L+ N++ LPP +L ++ L N++TELP + L +
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 28/63 (44%)
Query: 101 CRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQI 160
C + DC L +P LP T L L N + LPP F Y +L +D N I
Sbjct: 2 CTVRYNVADCSHLKLTHIPDDLPSNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSI 61
Query: 161 SKV 163
SK+
Sbjct: 62 SKL 64
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAV 165
TEL L N I ++ F N K L ++DLS N +S +
Sbjct: 100 TELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKL 138
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 46/119 (38%), Gaps = 6/119 (5%)
Query: 129 LRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKXXXXXXXXXXXXXYLP 188
L LE N + E+P F N L+ I+L N ++K+ F +
Sbjct: 541 LNLESNGLDEIPVGVFKNLFELKSINLGLNNLNKLEPFIFDDQTSLRSLNLQKNLITSVE 600
Query: 189 DGVFAELFR-LRTLRISENSFICDCH-LSWLHRWLKR----YPRLGLYTKCFAPSHIKG 241
VF F+ L +L + N F C C +SW W+ + L + C P H G
Sbjct: 601 KDVFGPPFQNLNSLDMRFNPFDCTCESISWFVNWINQTHTNISELSTHYLCNTPHHYYG 659
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 42/99 (42%)
Query: 110 CREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQ 169
C E K+P LP +T L L N + L +F ++ L+ +DLS+ +I + A+Q
Sbjct: 15 CMELNFYKIPDNLPFSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ 74
Query: 170 GLKXXXXXXXXXXXXXYLPDGVFAELFRLRTLRISENSF 208
L L G F+ L L+ L E +
Sbjct: 75 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 113
Score = 34.7 bits (78), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 4 TLNNNNLTYLPDGVFAELFRLRTLRISENSFICDC-HLSWLHRWLKR 49
L+ N L +PDG+F L L+ + + N + C C + +L RWL +
Sbjct: 207 ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 253
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 52/146 (35%), Gaps = 31/146 (21%)
Query: 108 VDCREKGLNKVPILLPEATTELRLEQNDITELP-PKAFANYKRLRRIDLSKNQISKVAV- 165
V+ L PI + EL + N I P+ F+N L +DLS N+I +
Sbjct: 109 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 168
Query: 166 ---------------------------DAFQGLKXXXXXXXXXXXXXYLPDGVFAELFRL 198
AF+ ++ +PDG+F L L
Sbjct: 169 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKS-VPDGIFDRLTSL 227
Query: 199 RTLRISENSFICDC-HLSWLHRWLKR 223
+ + + N + C C + +L RWL +
Sbjct: 228 QKIWLHTNPWDCSCPRIDYLSRWLNK 253
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 42/99 (42%)
Query: 110 CREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQ 169
C E K+P LP +T L L N + L +F ++ L+ +DLS+ +I + A+Q
Sbjct: 16 CMELNFYKIPDNLPFSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ 75
Query: 170 GLKXXXXXXXXXXXXXYLPDGVFAELFRLRTLRISENSF 208
L L G F+ L L+ L E +
Sbjct: 76 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 114
Score = 34.7 bits (78), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 4 TLNNNNLTYLPDGVFAELFRLRTLRISENSFICDC-HLSWLHRWLKR 49
L+ N L +PDG+F L L+ + + N + C C + +L RWL +
Sbjct: 208 ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 254
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 52/146 (35%), Gaps = 31/146 (21%)
Query: 108 VDCREKGLNKVPILLPEATTELRLEQNDITELP-PKAFANYKRLRRIDLSKNQISKVAV- 165
V+ L PI + EL + N I P+ F+N L +DLS N+I +
Sbjct: 110 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 169
Query: 166 ---------------------------DAFQGLKXXXXXXXXXXXXXYLPDGVFAELFRL 198
AF+ ++ +PDG+F L L
Sbjct: 170 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKS-VPDGIFDRLTSL 228
Query: 199 RTLRISENSFICDC-HLSWLHRWLKR 223
+ + + N + C C + +L RWL +
Sbjct: 229 QKIWLHTNPWDCSCPRIDYLSRWLNK 254
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 43/96 (44%)
Query: 110 CREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQ 169
C ++ L+KVP +P +T + L N + L +F+N+ L+ +DLS+ +I + A+
Sbjct: 18 CMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWH 77
Query: 170 GLKXXXXXXXXXXXXXYLPDGVFAELFRLRTLRISE 205
GL G F+ L L L E
Sbjct: 78 GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVE 113
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 27/66 (40%)
Query: 141 PKAFANYKRLRRIDLSKNQISKVAVDAFQGLKXXXXXXXXXXXXXYLPDGVFAELFRLRT 200
FAN L +DLSK Q+ +++ F L +L + +L+ L T
Sbjct: 466 SNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLST 525
Query: 201 LRISEN 206
L S N
Sbjct: 526 LDCSFN 531
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 43/96 (44%)
Query: 110 CREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQ 169
C ++ L+KVP +P +T + L N + L +F+N+ L+ +DLS+ +I + A+
Sbjct: 13 CMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWH 72
Query: 170 GLKXXXXXXXXXXXXXYLPDGVFAELFRLRTLRISE 205
GL G F+ L L L E
Sbjct: 73 GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVE 108
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 27/66 (40%)
Query: 141 PKAFANYKRLRRIDLSKNQISKVAVDAFQGLKXXXXXXXXXXXXXYLPDGVFAELFRLRT 200
FAN L +DLSK Q+ +++ F L +L + +L+ L T
Sbjct: 461 SNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLST 520
Query: 201 LRISEN 206
L S N
Sbjct: 521 LDCSFN 526
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 42/99 (42%)
Query: 110 CREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQ 169
C E K+P LP +T L L N + L +F ++ L+ +DLS+ +I + A+Q
Sbjct: 15 CEELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ 74
Query: 170 GLKXXXXXXXXXXXXXYLPDGVFAELFRLRTLRISENSF 208
L L G F+ L L+ L E +
Sbjct: 75 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 113
Score = 35.0 bits (79), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 4 TLNNNNLTYLPDGVFAELFRLRTLRISENSFICDC-HLSWLHRWLKR 49
L+ N L +PDG+F L L+ + + N + C C + +L RWL +
Sbjct: 207 ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 253
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 52/146 (35%), Gaps = 31/146 (21%)
Query: 108 VDCREKGLNKVPILLPEATTELRLEQNDITELP-PKAFANYKRLRRIDLSKNQISKVAV- 165
V+ L PI + EL + N I P+ F+N L +DLS N+I +
Sbjct: 109 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 168
Query: 166 ---------------------------DAFQGLKXXXXXXXXXXXXXYLPDGVFAELFRL 198
AF+ ++ +PDG+F L L
Sbjct: 169 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKS-VPDGIFDRLTSL 227
Query: 199 RTLRISENSFICDC-HLSWLHRWLKR 223
+ + + N + C C + +L RWL +
Sbjct: 228 QKIWLHTNPWDCSCPRIDYLSRWLNK 253
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 42/99 (42%)
Query: 110 CREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQ 169
C E K+P LP +T L L N + L +F ++ L+ +DLS+ +I + A+Q
Sbjct: 14 CMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ 73
Query: 170 GLKXXXXXXXXXXXXXYLPDGVFAELFRLRTLRISENSF 208
L L G F+ L L+ L E +
Sbjct: 74 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112
Score = 34.7 bits (78), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 4 TLNNNNLTYLPDGVFAELFRLRTLRISENSFICDC-HLSWLHRWLKR 49
L+ N L +PDG+F L L+ + + N + C C + +L RWL +
Sbjct: 206 ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 252
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 52/146 (35%), Gaps = 31/146 (21%)
Query: 108 VDCREKGLNKVPILLPEATTELRLEQNDITELP-PKAFANYKRLRRIDLSKNQISKVAV- 165
V+ L PI + EL + N I P+ F+N L +DLS N+I +
Sbjct: 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167
Query: 166 ---------------------------DAFQGLKXXXXXXXXXXXXXYLPDGVFAELFRL 198
AF+ ++ +PDG+F L L
Sbjct: 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKS-VPDGIFDRLTSL 226
Query: 199 RTLRISENSFICDC-HLSWLHRWLKR 223
+ + + N + C C + +L RWL +
Sbjct: 227 QKIWLHTNPWDCSCPRIDYLSRWLNK 252
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 42/99 (42%)
Query: 110 CREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQ 169
C E K+P LP +T L L N + L +F ++ L+ +DLS+ +I + A+Q
Sbjct: 16 CMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ 75
Query: 170 GLKXXXXXXXXXXXXXYLPDGVFAELFRLRTLRISENSF 208
L L G F+ L L+ L E +
Sbjct: 76 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNL 114
Score = 34.7 bits (78), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 4 TLNNNNLTYLPDGVFAELFRLRTLRISENSFICDC-HLSWLHRWLKR 49
L+ N L +PDG+F L L+ + + N + C C + +L RWL +
Sbjct: 208 ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 254
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 50/140 (35%), Gaps = 31/140 (22%)
Query: 114 GLNKVPILLPEATTELRLEQNDITELP-PKAFANYKRLRRIDLSKNQISKVAV------- 165
L PI + EL + N I P+ F+N L +DLS N+I +
Sbjct: 116 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 175
Query: 166 ---------------------DAFQGLKXXXXXXXXXXXXXYLPDGVFAELFRLRTLRIS 204
AF+ ++ +PDG+F L L+ + +
Sbjct: 176 QMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKS-VPDGIFDRLTSLQKIWLH 234
Query: 205 ENSFICDC-HLSWLHRWLKR 223
N + C C + +L RWL +
Sbjct: 235 TNPWDCSCPRIDYLSRWLNK 254
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 48/120 (40%), Gaps = 5/120 (4%)
Query: 91 CAAEPSCPH---PCR--CADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFA 145
AA S P PC + C E K+P LP +T L L N + L +F
Sbjct: 14 AAANSSIPESWEPCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFF 73
Query: 146 NYKRLRRIDLSKNQISKVAVDAFQGLKXXXXXXXXXXXXXYLPDGVFAELFRLRTLRISE 205
++ L+ +DLS+ +I + A+Q L L G F+ L L+ L E
Sbjct: 74 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 133
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 18/141 (12%)
Query: 121 LLPEATTELR------LEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKXX 174
LP+ TELR L Q + +L P AF + L+ +++S N ++D F K
Sbjct: 485 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF--FSLDTFP-YKCL 541
Query: 175 XXXXXXXXXXXYLPDGVFAEL----FRLRTLRISENSFICDC-HLSWLHRWLKRYPRLGL 229
++ EL L L +++N F C C H S+L +W+K +L +
Sbjct: 542 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFL-QWIKDQRQLLV 600
Query: 230 YT---KCFAPSHIKGQNILDI 247
+C PS +G +L +
Sbjct: 601 EVERMECATPSDKQGMPVLSL 621
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Query: 135 DITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKXXXXXXXXXXXXXYLPDGVFAE 194
D++ + AF + K + +DLS N+++ +++A LK LP +
Sbjct: 487 DLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILP-SLLPI 545
Query: 195 LFRLRTLRISENSFICDCHLSWLHRWLKR 223
L + RT+ + +N C C + W K
Sbjct: 546 LSQQRTINLRQNPLDCTCSNIYFLEWYKE 574
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%)
Query: 109 DCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAF 168
+C GLN++P LP +T L N + + F+ L +DL++ QI + D F
Sbjct: 18 NCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTF 77
Query: 169 QG 170
Q
Sbjct: 78 QS 79
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 41/96 (42%)
Query: 110 CREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQ 169
C E K+P LP +T L L N + L +F ++ L+ +DLS+ +I + A+Q
Sbjct: 14 CMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ 73
Query: 170 GLKXXXXXXXXXXXXXYLPDGVFAELFRLRTLRISE 205
L L G F+ L L+ L E
Sbjct: 74 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 18/141 (12%)
Query: 121 LLPEATTELR------LEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKXX 174
LP+ TELR L Q + +L P AF + L+ +++S N ++D F K
Sbjct: 461 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF--FSLDTFP-YKCL 517
Query: 175 XXXXXXXXXXXYLPDGVFAEL----FRLRTLRISENSFICDC-HLSWLHRWLKRYPRLGL 229
++ EL L L +++N F C C H S+L +W+K +L +
Sbjct: 518 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFL-QWIKDQRQLLV 576
Query: 230 YT---KCFAPSHIKGQNILDI 247
+C PS +G +L +
Sbjct: 577 EVERMECATPSDKQGMPVLSL 597
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%)
Query: 104 ADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKV 163
++ +VD + GL VP L + TT L + QN I+EL + +LR + +S N+I +
Sbjct: 1 SEFLVDRSKNGLIHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYL 60
Query: 164 AVDAFQ 169
+ F+
Sbjct: 61 DISVFK 66
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 24/106 (22%)
Query: 129 LRLEQNDITE-----LPPKAFANYKRLRRIDLSKNQISK-----VAVDAFQGLKXXXXXX 178
L + N +T+ LPP R++ +DL N+I V ++A Q L
Sbjct: 404 LNMSSNILTDTIFRCLPP-------RIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQL 456
Query: 179 XXXXXXXYLPDGVFAELFRLRTLRISENSFICDC-HLSWLHRWLKR 223
+PDG+F L L+ + + N + C C + +L RWL +
Sbjct: 457 KS------VPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 496
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 7 NNNLTYLPDGVFAELFRLRTLRISENSFICDC-HLSWLHRWLKR 49
+N L +PDG+F L L+ + + N + C C + +L RWL +
Sbjct: 453 SNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 496
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 41/101 (40%), Gaps = 25/101 (24%)
Query: 124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKXXXXXXXXXXX 183
E + N + ++P F +L++++L+ NQ+ V
Sbjct: 170 ENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSV-------------------- 209
Query: 184 XXYLPDGVFAELFRLRTLRISENSFICDC-HLSWLHRWLKR 223
PDG+F L L+ + + N + C C + +L RWL +
Sbjct: 210 ----PDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 246
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDC-HLSWLHRWLKR 49
L +N L +PDG+F L L+ + + N + C C + +L RWL +
Sbjct: 201 LASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 246
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 7/96 (7%)
Query: 129 LRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKXXXXXXXXXXXXXYLP 188
L L N + LPP F++ LR + L+ N+++ V + L P
Sbjct: 485 LYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT---VLSHNDLPANLEILDISRNQLLAP 541
Query: 189 D-GVFAELFRLRTLRISENSFICDCHLSWLHRWLKR 223
+ VF L L I+ N FIC+C LS WL
Sbjct: 542 NPDVFVSL---SVLDITHNKFICECELSTFINWLNH 574
Score = 35.0 bits (79), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 51/127 (40%), Gaps = 5/127 (3%)
Query: 50 YPRLGL-YTKCFAPSHIKGQNILDIPEHEFKC--SGPVEKPTGECAAEPS--CPHPCRCA 104
Y R+ + + KC P ILD+ + + +G + A H
Sbjct: 187 YSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG 246
Query: 105 DGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVA 164
G + ++ N L + L L + L + F K L+ ++L+ N+I+K+A
Sbjct: 247 FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIA 306
Query: 165 VDAFQGL 171
+AF GL
Sbjct: 307 DEAFYGL 313
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 35/79 (44%)
Query: 129 LRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKXXXXXXXXXXXXXYLP 188
L L N I ++ +AF L+ ++LS N + ++ F GL +
Sbjct: 295 LNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQ 354
Query: 189 DGVFAELFRLRTLRISENS 207
D F L +L+TL + +N+
Sbjct: 355 DQTFKFLEKLQTLDLRDNA 373
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 139 LPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKXXXXXXXXX--XXXXYLPDGVFAELF 196
+ +AF N LR +DL ++I + DAFQGL L DG F L
Sbjct: 64 IDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK 123
Query: 197 RLRTLRISEN 206
L L +S+N
Sbjct: 124 ALTRLDLSKN 133
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 24 LRTLRISENSFICDCHLSWLHRWLKR 49
L L I+ N FIC+C LS WL
Sbjct: 549 LSVLDITHNKFICECELSTFINWLNH 574
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
Query: 112 EKGLNKVPILLPEATT------ELRLEQNDITE--LPPKAFANYKRLRRIDLSKNQI 160
+ G +K+ L P+A ELRL +++ L F N K L R+DLSKNQI
Sbjct: 79 DLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQI 135
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCH 39
LN+N L LP GVF+ L LR L ++ N H
Sbjct: 487 LNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSH 521
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 117 KVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQG 170
VP+L T L LE+ND++ LP F N +L + +S N + ++ D FQ
Sbjct: 115 NVPLL-----TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 163
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 362 NDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
N I LPP F N L + LE+ND++ LP F N +L +
Sbjct: 103 NAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL 146
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 35.4 bits (80), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%)
Query: 104 ADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKV 163
A+ +C GL+++P LP T L N + + + F+ L +DL++ QI+ +
Sbjct: 10 ANKTYNCENLGLSEIPDTLPNTTEFLEFSFNFLPTIHNRTFSRLMNLTFLDLTRCQINWI 69
Query: 164 AVDAFQ 169
D FQ
Sbjct: 70 HEDTFQ 75
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 35.4 bits (80), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 78 FKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDIT 137
++ + P E+ G A + +++ E GL +P LP T L + N++T
Sbjct: 15 WRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLT 74
Query: 138 ELPPKAFANYKRLRRIDLSKNQISKVAV 165
LP A LR +++S NQ++ + V
Sbjct: 75 SLP----ALPPELRTLEVSGNQLTSLPV 98
>pdb|2IFG|A Chain A, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
pdb|2IFG|B Chain B, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
Length = 347
Score = 35.4 bits (80), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 60/167 (35%), Gaps = 31/167 (18%)
Query: 97 CPHPC---RCA-DGIVDCREKGLNKVPILLPEATTELRLE-QNDITELPPKAFANYKRLR 151
CPH RC DG +D L+ +P E TEL +E Q + L + LR
Sbjct: 6 CPHGSSGLRCTRDGALDS----LHHLPG--AENLTELYIENQQHLQHLELRDLRGLGELR 59
Query: 152 RIDLSKNQISKVAVDAFQGLKXXXXXXXXXXXXXYLPDGVFAELFRLRTLRISENSFICD 211
+ + K+ + VA DAF L L L+ L +S N C
Sbjct: 60 NLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPLHCS 118
Query: 212 CHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSS 258
C L WL RW + + + +PE + +C G
Sbjct: 119 CALRWLQRW-------------------EEEGLGGVPEQKLQCHGQG 146
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 19/61 (31%)
Query: 22 FRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS 81
L+ L +S N C C L WL RW + + + +PE + +C
Sbjct: 103 LSLQELVLSGNPLHCSCALRWLQRW-------------------EEEGLGGVPEQKLQCH 143
Query: 82 G 82
G
Sbjct: 144 G 144
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 35.4 bits (80), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 30/64 (46%)
Query: 105 DGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVA 164
+ +VD + L VP LP T L L QN I+EL + LR + LS N+I +
Sbjct: 33 ESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLD 92
Query: 165 VDAF 168
F
Sbjct: 93 FHVF 96
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 58/148 (39%), Gaps = 26/148 (17%)
Query: 124 EATTELRLEQNDITE-----LPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKXXXXXX 178
E+ L L N +T LPPK ++ +DL N+I + D L+
Sbjct: 428 ESILVLNLSSNMLTGSVFRCLPPK-------VKVLDLHNNRIMSIPKDV-THLQALQELN 479
Query: 179 XXXXXXXYLPDGVFAELFRLRTLRISENSFICDC-HLSWLHRWLKRYPRLGLYTKCFAPS 237
+PDGVF L L+ + + +N + C C + +L W+ ++ S
Sbjct: 480 VASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKH------------S 527
Query: 238 HIKGQNILDIPEHEFKCSGSSMETRSKI 265
+ + + KCSGS RS I
Sbjct: 528 GVVRNSAGSVAPDSAKCSGSGKPVRSII 555
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 7 NNNLTYLPDGVFAELFRLRTLRISENSFICDC-HLSWLHRWLKRY 50
+N L +PDGVF L L+ + + +N + C C + +L W+ ++
Sbjct: 482 SNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKH 526
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 35.0 bits (79), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 118 VPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQG 170
VP+L T L LE+ND++ LP F N +L + +S N + ++ D FQ
Sbjct: 122 VPLL-----TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 169
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 362 NDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRL 402
N I LPP F N L + LE+ND++ LP F N +L
Sbjct: 109 NAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL 149
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 48/118 (40%), Gaps = 28/118 (23%)
Query: 107 IVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVD 166
++D L+ + LP EL + +N + LP + + L + +S+NQ+ V
Sbjct: 435 VLDVSNNNLDSFSLFLPRLQ-ELYISRNKLKTLPDASL--FPVLLVMKISRNQLKSV--- 488
Query: 167 AFQGLKXXXXXXXXXXXXXYLPDGVFAELFRLRTLRISENSFICDC-HLSWLHRWLKR 223
PDG+F L L+ + + N + C C + +L RWL +
Sbjct: 489 ---------------------PDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 525
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDC-HLSWLHRWLKR 49
++ N L +PDG+F L L+ + + N + C C + +L RWL +
Sbjct: 480 ISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 525
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 91 CAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRL 150
++P C + + +C GL ++P LP T L N + + F+ L
Sbjct: 1 AGSDPKCTE--KEGNRTYNCENLGLREIPDTLPNTTEVLEFSFNFLPTIQNTTFSRLINL 58
Query: 151 RRIDLSKNQISKVAVDAFQ 169
+DL++ QI+ V D FQ
Sbjct: 59 IFLDLTRCQINWVHEDTFQ 77
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/145 (20%), Positives = 58/145 (40%), Gaps = 7/145 (4%)
Query: 111 REKGLNKVPILLPEATTE-LRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQ 169
++ ++K +L + E L L ++ + +AF + + +DLS N ++ ++DA
Sbjct: 461 QDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALS 520
Query: 170 GLKXXXXXXXXXXXXXYLPDGVFAELFRLRTLRISENSFICDCH----LSWLHRWLKRYP 225
LK +P + L + + +S N C C ++W L +
Sbjct: 521 HLK-GLYLNMASNNIRIIPPHLLPALSQQSIINLSHNPLDCTCSNIHFITWYKENLHKLE 579
Query: 226 RLGLYTKCFAPSHIKGQNILDIPEH 250
T C P ++G + D+ H
Sbjct: 580 D-SEETTCANPPSLRGVKLSDVKLH 603
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 47/118 (39%), Gaps = 28/118 (23%)
Query: 107 IVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVD 166
++D L+ + LP EL + +N + LP + + L + ++ NQ+ V
Sbjct: 461 VLDVSNNNLDSFSLFLPRLQ-ELYISRNKLKTLPDASL--FPVLLVMKIASNQLKSV--- 514
Query: 167 AFQGLKXXXXXXXXXXXXXYLPDGVFAELFRLRTLRISENSFICDC-HLSWLHRWLKR 223
PDG+F L L+ + + N + C C + +L RWL +
Sbjct: 515 ---------------------PDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 551
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 7 NNNLTYLPDGVFAELFRLRTLRISENSFICDC-HLSWLHRWLKR 49
+N L +PDG+F L L+ + + N + C C + +L RWL +
Sbjct: 508 SNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 551
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDC-HLSWLHRWLKR 49
++ N L +PDG+F L L+ + + N + C C + +L RWL +
Sbjct: 480 ISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 525
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 187 LPDGVFAELFRLRTLRISENSFICDC-HLSWLHRWLKR 223
+PDG+F L L+ + + N + C C + +L RWL +
Sbjct: 488 VPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 525
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 8 NNLTYLPDGVFAELFRLRTLRISENSFICDC-HLSWLHRWLKR 49
N L +PDG+F L L+ + + N + C C + +L RWL +
Sbjct: 287 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 329
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 187 LPDGVFAELFRLRTLRISENSFICDC-HLSWLHRWLKR 223
+PDG+F L L+ + + N + C C + +L RWL +
Sbjct: 292 VPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 329
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/55 (21%), Positives = 26/55 (47%)
Query: 99 HPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRI 153
HP +V +E+ +VP+ + + L ++D+ + K YKR+ ++
Sbjct: 503 HPDITDVAVVAMKEEAAGEVPVAFVVKSKDSELSEDDVKQFVSKQVVFYKRINKV 557
>pdb|2QX7|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QX7|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 318
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 338 KVLLYSYISNNFKRWTNRSRRLEQNDITELPP-KAFANYKRLRRIRLEQNDI--TELPPK 394
K+L ++ N KR+ +E++ I LPP +A KR+ R +E+ +I T +
Sbjct: 97 KILEAIKVAGNIKRFLPSDFGVEEDRINALPPFEALIERKRMIRRAIEEANIPYTYVSAN 156
Query: 395 AFANY 399
FA+Y
Sbjct: 157 CFASY 161
>pdb|3C3X|A Chain A, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
pdb|3C3X|B Chain B, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
Length = 318
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 338 KVLLYSYISNNFKRWTNRSRRLEQNDITELPP-KAFANYKRLRRIRLEQNDI--TELPPK 394
K+L ++ N KR+ +E++ I LPP +A KR+ R +E+ +I T +
Sbjct: 97 KILEAIKVAGNIKRFLPSDFGVEEDRINALPPFEALIERKRMIRRAIEEANIPYTYVSAN 156
Query: 395 AFANY 399
FA+Y
Sbjct: 157 CFASY 161
>pdb|2QW8|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QW8|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 314
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 338 KVLLYSYISNNFKRWTNRSRRLEQNDITELPP-KAFANYKRLRRIRLEQNDI--TELPPK 394
K+L ++ N KR+ +E++ I LPP +A KR+ R +E+ +I T +
Sbjct: 93 KILEAIKVAGNIKRFLPSDFGVEEDRINALPPFEALIERKRMIRRAIEEANIPYTYVSAN 152
Query: 395 AFANY 399
FA+Y
Sbjct: 153 CFASY 157
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.447
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,245,397
Number of Sequences: 62578
Number of extensions: 504459
Number of successful extensions: 1598
Number of sequences better than 100.0: 80
Number of HSP's better than 100.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1054
Number of HSP's gapped (non-prelim): 429
length of query: 405
length of database: 14,973,337
effective HSP length: 101
effective length of query: 304
effective length of database: 8,652,959
effective search space: 2630499536
effective search space used: 2630499536
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)