Query psy12210
Match_columns 405
No_of_seqs 178 out of 1812
Neff 9.9
Searched_HMMs 46136
Date Fri Aug 16 21:39:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12210.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12210hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4194|consensus 100.0 4.8E-33 1E-37 258.4 2.4 343 2-404 82-443 (873)
2 KOG4237|consensus 100.0 5.6E-33 1.2E-37 247.1 0.5 293 65-405 3-351 (498)
3 KOG4237|consensus 100.0 1.6E-32 3.5E-37 244.1 2.9 327 3-386 169-498 (498)
4 KOG4194|consensus 100.0 2.4E-30 5.3E-35 240.5 0.5 316 3-385 107-448 (873)
5 PLN00113 leucine-rich repeat r 99.9 4.9E-24 1.1E-28 227.1 16.3 96 302-405 476-576 (968)
6 PLN00113 leucine-rich repeat r 99.9 2.6E-23 5.6E-28 221.6 17.6 351 2-391 216-586 (968)
7 KOG0472|consensus 99.9 6.4E-25 1.4E-29 196.3 -7.9 144 63-209 142-288 (565)
8 KOG0444|consensus 99.9 3.9E-24 8.4E-29 201.0 -4.7 296 3-404 12-320 (1255)
9 KOG0472|consensus 99.8 9.4E-24 2E-28 188.9 -5.8 379 2-394 95-545 (565)
10 PRK15387 E3 ubiquitin-protein 99.8 2.8E-20 6.2E-25 186.7 14.0 261 2-398 205-467 (788)
11 KOG0444|consensus 99.8 9.5E-23 2E-27 191.7 -7.3 318 3-403 37-365 (1255)
12 PRK15370 E3 ubiquitin-protein 99.8 1.9E-18 4.1E-23 174.5 10.6 202 106-390 223-429 (754)
13 PRK15370 E3 ubiquitin-protein 99.7 3.3E-18 7.1E-23 172.8 8.9 246 2-366 182-429 (754)
14 PRK15387 E3 ubiquitin-protein 99.7 1.6E-17 3.4E-22 167.0 11.6 238 2-372 226-465 (788)
15 KOG0618|consensus 99.7 5.6E-19 1.2E-23 173.3 -3.0 241 128-405 182-457 (1081)
16 KOG0618|consensus 99.6 9.4E-18 2E-22 164.8 -3.7 101 106-209 222-323 (1081)
17 PLN03210 Resistant to P. syrin 99.6 6.7E-14 1.5E-18 150.6 19.9 172 3-207 539-715 (1153)
18 PLN03210 Resistant to P. syrin 99.5 3.5E-13 7.6E-18 145.1 18.3 77 302-389 826-907 (1153)
19 KOG0617|consensus 99.4 5.2E-15 1.1E-19 118.5 -5.3 83 124-209 33-115 (264)
20 cd00116 LRR_RI Leucine-rich re 99.3 1.8E-12 3.9E-17 120.9 5.1 163 1-209 1-178 (319)
21 KOG0617|consensus 99.2 6.3E-13 1.4E-17 106.7 -3.4 150 3-190 38-191 (264)
22 PF14580 LRR_9: Leucine-rich r 99.1 7E-11 1.5E-15 98.4 5.2 87 124-212 42-129 (175)
23 cd00116 LRR_RI Leucine-rich re 99.1 1.1E-10 2.3E-15 108.9 6.2 85 125-209 109-206 (319)
24 PF14580 LRR_9: Leucine-rich r 99.1 1.5E-10 3.3E-15 96.3 4.7 99 106-204 45-148 (175)
25 KOG0532|consensus 99.1 6.4E-12 1.4E-16 118.3 -4.2 193 106-394 53-252 (722)
26 PF13855 LRR_8: Leucine rich r 99.0 3.7E-10 8.1E-15 77.4 3.7 59 149-207 2-60 (61)
27 PF13855 LRR_8: Leucine rich r 99.0 5.5E-10 1.2E-14 76.5 4.0 60 125-184 2-61 (61)
28 COG4886 Leucine-rich repeat (L 99.0 8.4E-10 1.8E-14 106.1 6.2 192 107-394 97-295 (394)
29 KOG0532|consensus 98.9 5.2E-11 1.1E-15 112.3 -3.0 108 98-209 138-247 (722)
30 KOG1259|consensus 98.8 1.7E-09 3.7E-14 94.6 1.3 83 302-394 330-417 (490)
31 COG4886 Leucine-rich repeat (L 98.8 5E-09 1.1E-13 100.7 4.2 180 128-404 97-281 (394)
32 KOG1259|consensus 98.7 1.5E-09 3.3E-14 95.0 -1.0 102 106-210 310-413 (490)
33 KOG0531|consensus 98.6 7.4E-09 1.6E-13 99.9 -0.2 215 106-393 98-322 (414)
34 KOG1859|consensus 98.6 2.9E-09 6.3E-14 103.4 -3.1 164 18-212 105-270 (1096)
35 KOG3207|consensus 98.6 6.9E-09 1.5E-13 95.2 -0.9 212 124-393 121-343 (505)
36 KOG0531|consensus 98.5 1E-08 2.2E-13 99.0 -0.9 83 302-393 187-272 (414)
37 KOG3207|consensus 98.5 2.7E-08 5.8E-13 91.5 1.6 201 106-369 124-343 (505)
38 PLN03150 hypothetical protein; 98.4 8.4E-07 1.8E-11 89.8 8.1 84 126-209 420-503 (623)
39 KOG1909|consensus 98.3 1.6E-07 3.6E-12 84.1 1.6 84 302-388 214-310 (382)
40 PLN03150 hypothetical protein; 98.3 1.5E-06 3.2E-11 88.1 7.1 107 105-211 420-530 (623)
41 KOG1859|consensus 98.2 6E-08 1.3E-12 94.5 -5.1 85 124-211 209-294 (1096)
42 PF12799 LRR_4: Leucine Rich r 98.1 2.2E-06 4.9E-11 53.8 3.2 38 355-393 4-41 (44)
43 PF13306 LRR_5: Leucine rich r 98.0 3E-05 6.5E-10 61.7 8.1 63 139-203 3-65 (129)
44 PF13306 LRR_5: Leucine rich r 97.9 3.8E-05 8.1E-10 61.1 7.5 127 162-403 2-129 (129)
45 KOG4658|consensus 97.9 8.8E-06 1.9E-10 84.7 3.9 77 106-183 574-653 (889)
46 PF12799 LRR_4: Leucine Rich r 97.9 1.6E-05 3.5E-10 49.9 3.4 38 125-163 2-39 (44)
47 TIGR00864 PCC polycystin catio 97.9 1.8E-05 3.8E-10 88.4 5.5 78 178-255 1-81 (2740)
48 PRK15386 type III secretion pr 97.8 0.00011 2.4E-09 69.1 9.5 69 106-185 55-125 (426)
49 KOG1909|consensus 97.8 3.1E-05 6.7E-10 69.8 4.6 177 17-209 87-283 (382)
50 KOG4579|consensus 97.7 1.4E-06 3.1E-11 67.8 -3.4 101 106-209 56-159 (177)
51 KOG4579|consensus 97.6 4.7E-06 1E-10 65.1 -2.1 85 302-396 54-143 (177)
52 KOG2982|consensus 97.5 1.6E-05 3.4E-10 70.2 -0.4 83 124-208 71-158 (418)
53 KOG1644|consensus 97.5 0.00013 2.9E-09 60.9 4.4 100 106-205 45-149 (233)
54 KOG1644|consensus 97.4 0.00034 7.3E-09 58.5 6.1 103 105-209 21-126 (233)
55 PRK15386 type III secretion pr 97.3 0.0015 3.3E-08 61.6 9.2 71 124-207 52-123 (426)
56 TIGR00864 PCC polycystin catio 97.2 0.00043 9.3E-09 77.9 5.2 78 4-81 1-81 (2740)
57 PF01462 LRRNT: Leucine rich r 96.8 0.00073 1.6E-08 37.6 1.7 28 96-123 1-28 (28)
58 KOG2123|consensus 96.8 8.9E-05 1.9E-09 64.9 -3.6 95 106-202 22-123 (388)
59 KOG4658|consensus 96.6 0.002 4.2E-08 67.6 3.9 103 104-207 524-629 (889)
60 COG5238 RNA1 Ran GTPase-activa 96.6 0.0018 4E-08 56.8 3.1 87 302-392 215-319 (388)
61 smart00013 LRRNT Leucine rich 96.4 0.0038 8.3E-08 36.3 3.0 30 96-125 1-30 (33)
62 PF00560 LRR_1: Leucine Rich R 96.3 0.0012 2.7E-08 34.4 0.5 22 377-399 1-22 (22)
63 KOG2123|consensus 96.3 0.00019 4.1E-09 62.9 -4.4 80 124-207 19-99 (388)
64 COG5238 RNA1 Ran GTPase-activa 96.2 0.0019 4.1E-08 56.7 1.0 89 302-393 158-259 (388)
65 KOG2120|consensus 95.9 0.00019 4.1E-09 63.6 -6.2 101 106-206 139-244 (419)
66 smart00369 LRR_TYP Leucine-ric 95.9 0.0067 1.4E-07 33.1 2.0 23 375-397 1-23 (26)
67 smart00370 LRR Leucine-rich re 95.9 0.0067 1.4E-07 33.1 2.0 23 375-397 1-23 (26)
68 PF13504 LRR_7: Leucine rich r 95.3 0.01 2.2E-07 28.7 1.2 17 376-392 1-17 (17)
69 KOG2739|consensus 95.2 0.011 2.5E-07 51.6 2.2 80 125-208 44-128 (260)
70 KOG2982|consensus 95.1 0.0047 1E-07 55.0 -0.5 225 126-405 47-284 (418)
71 PF00560 LRR_1: Leucine Rich R 94.9 0.018 3.8E-07 30.0 1.6 15 150-164 2-16 (22)
72 KOG3665|consensus 94.8 0.039 8.5E-07 56.5 4.9 83 124-208 148-232 (699)
73 KOG3665|consensus 94.3 0.027 5.8E-07 57.7 2.6 84 124-209 173-263 (699)
74 KOG2739|consensus 94.3 0.03 6.5E-07 49.0 2.5 80 124-204 65-151 (260)
75 smart00369 LRR_TYP Leucine-ric 94.3 0.045 9.7E-07 29.7 2.3 23 171-193 1-23 (26)
76 smart00370 LRR Leucine-rich re 94.3 0.045 9.7E-07 29.7 2.3 23 171-193 1-23 (26)
77 KOG2120|consensus 94.1 0.00058 1.3E-08 60.6 -8.5 83 125-207 186-271 (419)
78 PF01462 LRRNT: Leucine rich r 93.2 0.079 1.7E-06 29.4 2.1 28 294-321 1-28 (28)
79 smart00013 LRRNT Leucine rich 92.7 0.16 3.5E-06 29.4 2.9 30 295-324 2-31 (33)
80 smart00082 LRRCT Leucine rich 91.9 0.091 2E-06 33.9 1.3 47 206-253 1-49 (51)
81 smart00365 LRR_SD22 Leucine-ri 87.3 0.44 9.5E-06 25.9 1.5 19 375-393 1-19 (26)
82 smart00364 LRR_BAC Leucine-ric 84.6 0.6 1.3E-05 25.3 1.2 18 376-393 2-19 (26)
83 PF13516 LRR_6: Leucine Rich r 84.1 0.14 2.9E-06 27.1 -1.5 19 375-393 1-19 (24)
84 KOG3864|consensus 83.3 0.31 6.7E-06 41.2 -0.4 93 111-207 86-187 (221)
85 KOG0473|consensus 79.3 0.028 6.1E-07 48.4 -7.9 93 114-209 29-124 (326)
86 smart00368 LRR_RI Leucine rich 77.1 2.8 6E-05 23.1 2.3 14 22-35 2-15 (28)
87 KOG3864|consensus 74.6 0.74 1.6E-05 39.0 -0.7 28 376-403 151-179 (221)
88 KOG0473|consensus 70.5 0.2 4.3E-06 43.4 -5.0 38 349-387 84-122 (326)
89 smart00367 LRR_CC Leucine-rich 51.9 11 0.00025 20.0 1.5 22 21-42 1-22 (26)
90 PF05725 FNIP: FNIP Repeat; I 41.3 45 0.00098 20.4 3.2 32 122-155 10-41 (44)
91 KOG3763|consensus 38.8 16 0.00035 36.1 1.3 62 146-209 216-283 (585)
92 KOG1947|consensus 33.1 34 0.00073 33.4 2.7 85 124-208 214-307 (482)
93 KOG3763|consensus 30.7 26 0.00057 34.6 1.3 61 124-185 218-283 (585)
94 PF01463 LRRCT: Leucine rich r 23.1 27 0.00059 18.5 -0.0 22 232-254 3-24 (25)
No 1
>KOG4194|consensus
Probab=99.97 E-value=4.8e-33 Score=258.39 Aligned_cols=343 Identities=19% Similarity=0.233 Sum_probs=209.5
Q ss_pred ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210 2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS 81 (405)
Q Consensus 2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~ 81 (405)
+||+++|+|.++...-|.++++|+.+.+..|.++ ..|.++.-......+.+.+|.|.++......-.
T Consensus 82 ~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-------------~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l 148 (873)
T KOG4194|consen 82 TLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-------------RIPRFGHESGHLEKLDLRHNLISSVTSEELSAL 148 (873)
T ss_pred eeeccccccccCcHHHHhcCCcceeeeeccchhh-------------hcccccccccceeEEeeeccccccccHHHHHhH
Confidence 6999999999999999999999999999999987 667776666666677888888888776554322
Q ss_pred CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCC-CCC--CCccEEEccCCCCCCCCcccccCCCCCcEEecCCC
Q psy12210 82 GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPI-LLP--EATTELRLEQNDITELPPKAFANYKRLRRIDLSKN 158 (405)
Q Consensus 82 ~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~-~~~--~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n 158 (405)
.. .+.+|+|.|.++++|. .+| .+++.|+|+.|.|+.+..+.|..+.+|..|.|++|
T Consensus 149 ~a---------------------lrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrN 207 (873)
T KOG4194|consen 149 PA---------------------LRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRN 207 (873)
T ss_pred hh---------------------hhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccC
Confidence 21 2777777777777775 333 36777777777777777777777777777777777
Q ss_pred cceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCC
Q psy12210 159 QISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSH 238 (405)
Q Consensus 159 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 238 (405)
+++.+++..|..++.|+.|++..|+|..+..-.|.++++|+.|.+..|.+.. .....+........+.
T Consensus 208 rittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~k------------L~DG~Fy~l~kme~l~ 275 (873)
T KOG4194|consen 208 RITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISK------------LDDGAFYGLEKMEHLN 275 (873)
T ss_pred cccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCccc------------ccCcceeeecccceee
Confidence 7777777777777777777777777776655567777777777777776541 1111122222222333
Q ss_pred CCCCcccccCCCcccccCccccccc-----------cceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceee
Q psy12210 239 IKGQNILDIPEHEFKCSGSSMETRS-----------KIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVD 307 (405)
Q Consensus 239 l~~~~l~~l~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~ 307 (405)
|..+.+..+...++.+.... ..+. ..|..-..++-..++.++|+++++..+..+. .|+.|.
T Consensus 276 L~~N~l~~vn~g~lfgLt~L-~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~-------~Le~Ln 347 (873)
T KOG4194|consen 276 LETNRLQAVNEGWLFGLTSL-EQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLS-------QLEELN 347 (873)
T ss_pred cccchhhhhhcccccccchh-hhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHH-------Hhhhhc
Confidence 33333333333332222100 0000 0011111222333444555555544443333 455555
Q ss_pred cCCCCCCcCCCCCC---CCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceee
Q psy12210 308 CREKGLNKVPILLP---EATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIR 382 (405)
Q Consensus 308 l~~n~l~~~p~~~~---~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~ 382 (405)
+++|.+..+....| ++|..|+|+ |.++..-... ...|+++++ +.|+|.+|+|..|+..+|.+++.|++||
T Consensus 348 Ls~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDa-----a~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~Ld 422 (873)
T KOG4194|consen 348 LSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDA-----AVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLD 422 (873)
T ss_pred ccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecc-----hhhhccchhhhheeecCceeeecchhhhccCcccceec
Confidence 55555555544443 355555666 6555432111 345666777 7777777777777777777777777777
Q ss_pred cccCCCcccChhhcCCCccccC
Q psy12210 383 LEQNDITELPPKAFANYKRLRR 404 (405)
Q Consensus 383 L~~N~l~~i~~~~f~~l~~L~~ 404 (405)
|.+|.|.+|-+.+|..+ .|+.
T Consensus 423 L~~NaiaSIq~nAFe~m-~Lk~ 443 (873)
T KOG4194|consen 423 LGDNAIASIQPNAFEPM-ELKE 443 (873)
T ss_pred CCCCcceeecccccccc-hhhh
Confidence 77777777766666665 4443
No 2
>KOG4237|consensus
Probab=99.97 E-value=5.6e-33 Score=247.09 Aligned_cols=293 Identities=38% Similarity=0.671 Sum_probs=240.1
Q ss_pred ccCCcccccCCCccccCCCCCC-CCCCCCC-CCCCCCCccccC---ceEEcCCCCccccCCCCCCCccEEEccCCCCCCC
Q psy12210 65 IKGQNILDIPEHEFKCSGPVEK-PTGECAA-EPSCPHPCRCAD---GIVDCREKGLNKVPILLPEATTELRLEQNDITEL 139 (405)
Q Consensus 65 l~~~~l~~l~~~~~~~~~~~~~-~~~~~~~-~~~~p~~~~c~~---~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l 139 (405)
+.+..+..+++..+.|.+.... ....|.. ...||..|+|.. ..++|++-+++++|.++|...+.++|..|.|+.|
T Consensus 3 lrG~~v~~l~~s~~~csg~~s~~~~~~C~~~~~~CP~pC~Cs~~~g~~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~i 82 (498)
T KOG4237|consen 3 LRGLNVADLQKSEFVCSGLQSAWAVPTCAHSASACPAPCTCSDVEGGIVDCRGKGLTEVPANLPPETVEIRLDQNQISSI 82 (498)
T ss_pred cccccccccccceeeecCchhhhhhhhhhhccccCCCCcccCCCCCceEEccCCCcccCcccCCCcceEEEeccCCcccC
Confidence 3455566677777888777654 5566666 789999999998 9999999999999999999999999999999999
Q ss_pred CcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccC-CcCcccChhhhhcccCC--------------------
Q psy12210 140 PPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNN-NNLTYLPDGVFAELFRL-------------------- 198 (405)
Q Consensus 140 ~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~l~~~~f~~l~~L-------------------- 198 (405)
|+++|+.+++|+.|+|++|.|+.|.|++|.++.++..|-+-+ |+|++++.++|+++..|
T Consensus 83 P~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~d 162 (498)
T KOG4237|consen 83 PPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRD 162 (498)
T ss_pred ChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHH
Confidence 999999999999999999999999999999999888776544 88999988888777665
Q ss_pred ----------------------------cEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCC
Q psy12210 199 ----------------------------RTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEH 250 (405)
Q Consensus 199 ----------------------------~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~ 250 (405)
+.+.+..|++.|+|+++|..++....+..+..+.|.++..+....+..+...
T Consensus 163 L~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~ 242 (498)
T KOG4237|consen 163 LPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDAR 242 (498)
T ss_pred hhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchh
Confidence 3444555667789999999999999999999999999999999999989888
Q ss_pred cccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCCCCCceEEEEE
Q psy12210 251 EFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYM 330 (405)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~~~~l~~L~l~ 330 (405)
.|.|... .+. +.+...++....||..| ++.+ ++|++|+++
T Consensus 243 kf~c~~e-------sl~---------------s~~~~~d~~d~~cP~~c-------------f~~L-----~~L~~lnls 282 (498)
T KOG4237|consen 243 KFLCSLE-------SLP---------------SRLSSEDFPDSICPAKC-------------FKKL-----PNLRKLNLS 282 (498)
T ss_pred hhhhhHH-------hHH---------------HhhccccCcCCcChHHH-------------Hhhc-----ccceEeccC
Confidence 8876521 111 22333333444444433 2222 588899999
Q ss_pred -ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcccChhhcCCCccccCC
Q psy12210 331 -VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405 (405)
Q Consensus 331 -n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L 405 (405)
|+|+.|. +.+|++... +.|+|..|+|..+..+.|.++..|+.|+|.+|+|+.+.+.+|..+..|++|
T Consensus 283 nN~i~~i~--------~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l 351 (498)
T KOG4237|consen 283 NNKITRIE--------DGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTL 351 (498)
T ss_pred CCccchhh--------hhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeee
Confidence 9999998 889999999 999999999999998899999999999999999999999889888877654
No 3
>KOG4237|consensus
Probab=99.97 E-value=1.6e-32 Score=244.12 Aligned_cols=327 Identities=30% Similarity=0.580 Sum_probs=287.6
Q ss_pred cccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC-
Q psy12210 3 RTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS- 81 (405)
Q Consensus 3 L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~- 81 (405)
|.+..|.++.+..++|..+..++.+++..|.+.++|.++|+.+.....+-...-..|..+..+.+..+..++...|.+.
T Consensus 169 LslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~ 248 (498)
T KOG4237|consen 169 LSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSL 248 (498)
T ss_pred hcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhH
Confidence 6788999999999999999999999999999999999999999988877777777788888899999999999888876
Q ss_pred -CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcc
Q psy12210 82 -GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQI 160 (405)
Q Consensus 82 -~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l 160 (405)
+......+++.....||..| +..+ ++|+.|++++|+|+.|.+++|.+...+++|.+.+|++
T Consensus 249 esl~s~~~~~d~~d~~cP~~c-------------f~~L-----~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l 310 (498)
T KOG4237|consen 249 ESLPSRLSSEDFPDSICPAKC-------------FKKL-----PNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKL 310 (498)
T ss_pred HhHHHhhccccCcCCcChHHH-------------Hhhc-----ccceEeccCCCccchhhhhhhcchhhhhhhhcCcchH
Confidence 33333456666677777666 2223 4899999999999999999999999999999999999
Q ss_pred eeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCC
Q psy12210 161 SKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIK 240 (405)
Q Consensus 161 ~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 240 (405)
..+....|.++.+|+.|++.+|+|+.+.+++|..+.+|..|.+-.|++.|+|.+.|+..|+.... ......|..|..+.
T Consensus 311 ~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~-~~~~~~Cq~p~~~~ 389 (498)
T KOG4237|consen 311 EFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKS-VVGNPRCQSPGFVR 389 (498)
T ss_pred HHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCC-CCCCCCCCCCchhc
Confidence 99999999999999999999999999999999999999999999999999999999999999988 77788899999999
Q ss_pred CCcccccCCCcccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCC
Q psy12210 241 GQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILL 320 (405)
Q Consensus 241 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~ 320 (405)
+.++.++....|+|.+.+ ...+...-.||..|.|--+++.+++..++.+|..+
T Consensus 390 ~~~~~dv~~~~~~c~~~e---------------------------e~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~i 442 (498)
T KOG4237|consen 390 QIPISDVAFGDFRCGGPE---------------------------ELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGI 442 (498)
T ss_pred cccchhccccccccCCcc---------------------------ccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCC
Confidence 999999999999887433 23344566799999999999999999999999999
Q ss_pred CCCceEEEEE-ecceeeeccchhccccccccCCccceEEecCCCCcccCcccccCCccCceeecccC
Q psy12210 321 PEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTNRSRRLEQNDITELPPKAFANYKRLRRIRLEQN 386 (405)
Q Consensus 321 ~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N 386 (405)
|.....|++. |.+..++ ...+.. -.+|+++|+|+.+.-..|.++.+|..|-|++|
T Consensus 443 P~d~telyl~gn~~~~vp--------~~~~~~---l~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 443 PVDVTELYLDGNAITSVP--------DELLRS---LLLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred CchhHHHhcccchhcccC--------HHHHhh---hhcccccCceehhhcccccchhhhheeEEecC
Confidence 9999999999 9999998 332222 47899999999999888999999999999886
No 4
>KOG4194|consensus
Probab=99.96 E-value=2.4e-30 Score=240.46 Aligned_cols=316 Identities=21% Similarity=0.268 Sum_probs=212.5
Q ss_pred cccCCCcCccCCchhhcccc-ccceEEccCCcccccch--hhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccc
Q psy12210 3 RTLNNNNLTYLPDGVFAELF-RLRTLRISENSFICDCH--LSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFK 79 (405)
Q Consensus 3 L~l~~n~i~~l~~~~f~~l~-~L~~L~l~~n~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~ 79 (405)
+++.+|.++.||. |++.. +|+.|+|.+|.|+.... +++++ . ...++++.|.|.+++...|.
T Consensus 107 v~l~~N~Lt~IP~--f~~~sghl~~L~L~~N~I~sv~se~L~~l~-------a-------lrslDLSrN~is~i~~~sfp 170 (873)
T KOG4194|consen 107 VNLNKNELTRIPR--FGHESGHLEKLDLRHNLISSVTSEELSALP-------A-------LRSLDLSRNLISEIPKPSFP 170 (873)
T ss_pred eeeccchhhhccc--ccccccceeEEeeeccccccccHHHHHhHh-------h-------hhhhhhhhchhhcccCCCCC
Confidence 5677777777776 45444 47777777777764321 22221 1 23456677777777766553
Q ss_pred cCCCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCCCCC---CCccEEEccCCCCCCCCcccccCCCCCcEEecC
Q psy12210 80 CSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLP---EATTELRLEQNDITELPPKAFANYKRLRRIDLS 156 (405)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~~~~---~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls 156 (405)
.... .+.++++.|.++.+-..-+ .+|.+|.|+.|+|+.+|.-+|.++++|+.|+|.
T Consensus 171 ~~~n---------------------i~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLn 229 (873)
T KOG4194|consen 171 AKVN---------------------IKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLN 229 (873)
T ss_pred CCCC---------------------ceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcc
Confidence 3211 1667777777766654322 366667777777777777677777777777777
Q ss_pred CCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccC-----chHHHH-------HHhhc
Q psy12210 157 KNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCH-----LSWLHR-------WLKRY 224 (405)
Q Consensus 157 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~-----l~~~~~-------~~~~~ 224 (405)
.|+|..+.--.|+++++|+.|.+..|.++.+..++|-.+.++++|++..|.+..... +..+.. .-+-.
T Consensus 230 rN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih 309 (873)
T KOG4194|consen 230 RNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIH 309 (873)
T ss_pred ccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheee
Confidence 777766655566677777777777777776666666666666666666666543211 111110 01122
Q ss_pred CCCCCccccCCCCCCCCCcccccCCCcccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCc
Q psy12210 225 PRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADG 304 (405)
Q Consensus 225 ~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~ 304 (405)
...|.....+..++|..+.+.++++..|.+. ..++-..++.++|..+...+|..+. +|+
T Consensus 310 ~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L--------------~~Le~LnLs~Nsi~~l~e~af~~ls-------sL~ 368 (873)
T KOG4194|consen 310 IDSWSFTQKLKELDLSSNRITRLDEGSFRVL--------------SQLEELNLSHNSIDHLAEGAFVGLS-------SLH 368 (873)
T ss_pred cchhhhcccceeEeccccccccCChhHHHHH--------------HHhhhhcccccchHHHHhhHHHHhh-------hhh
Confidence 2333444455566677777777777766554 3344566888899999988887776 899
Q ss_pred eeecCCCCCCcCCCC---C---CCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCc
Q psy12210 305 IVDCREKGLNKVPIL---L---PEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYK 376 (405)
Q Consensus 305 ~l~l~~n~l~~~p~~---~---~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~ 376 (405)
.||++.|.+.-.-+. . .+.|+.|.+. |+++.|+ ...|++++. ++|||.+|.|.+|.+.+|..+
T Consensus 369 ~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~--------krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m- 439 (873)
T KOG4194|consen 369 KLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIP--------KRAFSGLEALEHLDLGDNAIASIQPNAFEPM- 439 (873)
T ss_pred hhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecc--------hhhhccCcccceecCCCCcceeecccccccc-
Confidence 999999999753221 1 3688999999 9999999 889999999 999999999999999999998
Q ss_pred cCceeeccc
Q psy12210 377 RLRRIRLEQ 385 (405)
Q Consensus 377 ~L~~L~L~~ 385 (405)
.|+.|.+..
T Consensus 440 ~Lk~Lv~nS 448 (873)
T KOG4194|consen 440 ELKELVMNS 448 (873)
T ss_pred hhhhhhhcc
Confidence 899888764
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=4.9e-24 Score=227.13 Aligned_cols=96 Identities=18% Similarity=0.234 Sum_probs=75.9
Q ss_pred cCceeecCCCCCCcC-CCCC--CCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCc
Q psy12210 302 ADGIVDCREKGLNKV-PILL--PEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYK 376 (405)
Q Consensus 302 ~l~~l~l~~n~l~~~-p~~~--~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~ 376 (405)
+++.|++++|+++.. |..+ .+.++.|+++ |.+.+.. +..+..+++ ++|+|++|.++...+..|..++
T Consensus 476 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--------p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 547 (968)
T PLN00113 476 RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEI--------PDELSSCKKLVSLDLSHNQLSGQIPASFSEMP 547 (968)
T ss_pred cceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeC--------ChHHcCccCCCEEECCCCcccccCChhHhCcc
Confidence 588888888888754 3322 3577888888 8888665 677888888 9999999999988888899999
Q ss_pred cCceeecccCCCcccChhhcCCCccccCC
Q psy12210 377 RLRRIRLEQNDITELPPKAFANYKRLRRM 405 (405)
Q Consensus 377 ~L~~L~L~~N~l~~i~~~~f~~l~~L~~L 405 (405)
+|+.|+|++|++++..+..+.+++.|++|
T Consensus 548 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l 576 (968)
T PLN00113 548 VLSQLDLSQNQLSGEIPKNLGNVESLVQV 576 (968)
T ss_pred cCCEEECCCCcccccCChhHhcCcccCEE
Confidence 99999999999887666667777777653
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.90 E-value=2.6e-23 Score=221.58 Aligned_cols=351 Identities=16% Similarity=0.079 Sum_probs=195.4
Q ss_pred ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCccccc-CCCcccc
Q psy12210 2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDI-PEHEFKC 80 (405)
Q Consensus 2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l-~~~~~~~ 80 (405)
.|+|++|++++..|..|+++++|+.|++++|.+++..+..+ .. ....+.+.+++|.+... +......
T Consensus 216 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-----~~-------l~~L~~L~L~~n~l~~~~p~~l~~l 283 (968)
T PLN00113 216 WIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL-----GN-------LKNLQYLFLYQNKLSGPIPPSIFSL 283 (968)
T ss_pred EEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhH-----hC-------CCCCCEEECcCCeeeccCchhHhhc
Confidence 57899999998777788999999999999998875332111 11 11223344555555432 2111111
Q ss_pred CCCCCCCCCCCCCCCCCCC-Cccc-cCceEEcCCCCccc-cCCCC--CCCccEEEccCCCCCCCCcccccCCCCCcEEec
Q psy12210 81 SGPVEKPTGECAAEPSCPH-PCRC-ADGIVDCREKGLNK-VPILL--PEATTELRLEQNDITELPPKAFANYKRLRRIDL 155 (405)
Q Consensus 81 ~~~~~~~~~~~~~~~~~p~-~~~c-~~~~l~~~~n~l~~-lp~~~--~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~l 155 (405)
.......+.++.....-|. ...+ .++.+++++|.++. +|..+ .++|+.|++++|.++...+..++++.+|+.|++
T Consensus 284 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L 363 (968)
T PLN00113 284 QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDL 363 (968)
T ss_pred cCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEEC
Confidence 1222222222222211221 1112 23667777766643 33332 246677777777776555555666777777777
Q ss_pred CCCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCC
Q psy12210 156 SKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFA 235 (405)
Q Consensus 156 s~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~ 235 (405)
++|.+....|.++..+++|+.|++++|.+....+..+..+++|+.|++++|.+...- +..+.....+.
T Consensus 364 s~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~------------p~~~~~l~~L~ 431 (968)
T PLN00113 364 STNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGEL------------PSEFTKLPLVY 431 (968)
T ss_pred CCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeEC------------ChhHhcCCCCC
Confidence 777776666666666666677777666666555555666667777777666654210 00001111111
Q ss_pred CCCCCCCcccccCCCcccccCc-ccccc--------ccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCcee
Q psy12210 236 PSHIKGQNILDIPEHEFKCSGS-SMETR--------SKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIV 306 (405)
Q Consensus 236 ~~~l~~~~l~~l~~~~~~~~~~-~~~~~--------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l 306 (405)
...+.++.+.......+...+. ....+ ..............++.+++.......+..+. +|+.|
T Consensus 432 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~-------~L~~L 504 (968)
T PLN00113 432 FLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLS-------ELMQL 504 (968)
T ss_pred EEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhh-------ccCEE
Confidence 1222222222111110000000 00000 00000011223334555555544433333333 68899
Q ss_pred ecCCCCCCcC-CCCC--CCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCcee
Q psy12210 307 DCREKGLNKV-PILL--PEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRI 381 (405)
Q Consensus 307 ~l~~n~l~~~-p~~~--~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L 381 (405)
++++|++... |..+ .++|+.|+++ |.+.+.. +..|.++++ +.|+|++|+++...+..+.++++|+.|
T Consensus 505 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~--------p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l 576 (968)
T PLN00113 505 KLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQI--------PASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQV 576 (968)
T ss_pred ECcCCcceeeCChHHcCccCCCEEECCCCcccccC--------ChhHhCcccCCEEECCCCcccccCChhHhcCcccCEE
Confidence 9999988754 4333 3688899999 9988776 678889999 999999999987666778888999999
Q ss_pred ecccCCCccc
Q psy12210 382 RLEQNDITEL 391 (405)
Q Consensus 382 ~L~~N~l~~i 391 (405)
++++|++.+.
T Consensus 577 ~ls~N~l~~~ 586 (968)
T PLN00113 577 NISHNHLHGS 586 (968)
T ss_pred eccCCcceee
Confidence 9999998753
No 7
>KOG0472|consensus
Probab=99.87 E-value=6.4e-25 Score=196.29 Aligned_cols=144 Identities=24% Similarity=0.301 Sum_probs=96.4
Q ss_pred CcccCCcccccCCCccccCCCCCCCCCCCCCCCCCCCCcc-ccCceEEcCCCCccccCCCCC--CCccEEEccCCCCCCC
Q psy12210 63 SHIKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCR-CADGIVDCREKGLNKVPILLP--EATTELRLEQNDITEL 139 (405)
Q Consensus 63 ~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-c~~~~l~~~~n~l~~lp~~~~--~~L~~L~L~~n~i~~l 139 (405)
....+|+++.+++..+.+.........+.......|..-. =+++.+||-.|-++.+|+.+. .++..||++.|+|..+
T Consensus 142 l~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~l 221 (565)
T KOG0472|consen 142 LDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFL 221 (565)
T ss_pred hhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccC
Confidence 3445566666666555444433333333333333332222 224788888888888887764 5777788888888887
Q ss_pred CcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccc
Q psy12210 140 PPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFI 209 (405)
Q Consensus 140 ~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~ 209 (405)
| .|+++..|++++++.|+|+.++.+-...+.++..||+.+|+++++|.++ ..+.+|+.||+++|.++
T Consensus 222 P--ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~-clLrsL~rLDlSNN~is 288 (565)
T KOG0472|consen 222 P--EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEI-CLLRSLERLDLSNNDIS 288 (565)
T ss_pred C--CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHH-HHhhhhhhhcccCCccc
Confidence 7 4778888888888888887777666667777778888888888777654 45777777888777765
No 8
>KOG0444|consensus
Probab=99.86 E-value=3.9e-24 Score=200.95 Aligned_cols=296 Identities=20% Similarity=0.275 Sum_probs=176.5
Q ss_pred cccCCCcCc-cCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210 3 RTLNNNNLT-YLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS 81 (405)
Q Consensus 3 L~l~~n~i~-~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~ 81 (405)
.|+++|.++ .--|.....|++++.|.|...++. .++..+..... +..+.+.+|++..+...--...
T Consensus 12 vDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~------~vPeEL~~lqk-------LEHLs~~HN~L~~vhGELs~Lp 78 (1255)
T KOG0444|consen 12 VDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE------QVPEELSRLQK-------LEHLSMAHNQLISVHGELSDLP 78 (1255)
T ss_pred ccccCCcCCCCcCchhHHHhhheeEEEechhhhh------hChHHHHHHhh-------hhhhhhhhhhhHhhhhhhccch
Confidence 467777777 333444577777777777766553 22222211111 1223444555544433211000
Q ss_pred CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCcc--ccCCCCC--CCccEEEccCCCCCCCCcccccCCCCCcEEecCC
Q psy12210 82 GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLN--KVPILLP--EATTELRLEQNDITELPPKAFANYKRLRRIDLSK 157 (405)
Q Consensus 82 ~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~--~lp~~~~--~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~ 157 (405)
.++.+....|++. .+|.+++ ..|++|+|++|+++..|.+ +...+++-.|++|+
T Consensus 79 ----------------------~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~-LE~AKn~iVLNLS~ 135 (1255)
T KOG0444|consen 79 ----------------------RLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTN-LEYAKNSIVLNLSY 135 (1255)
T ss_pred ----------------------hhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchh-hhhhcCcEEEEccc
Confidence 0144555555553 3565554 4566777777777766653 55666677777777
Q ss_pred CcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCC
Q psy12210 158 NQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPS 237 (405)
Q Consensus 158 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 237 (405)
|+|.+|+...|.+++.|-.||+++|++..+||.. ..+..|+.|.+++|++. .++ ++.. .....++.+
T Consensus 136 N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~-RRL~~LqtL~Ls~NPL~------hfQ--LrQL----PsmtsL~vL 202 (1255)
T KOG0444|consen 136 NNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQI-RRLSMLQTLKLSNNPLN------HFQ--LRQL----PSMTSLSVL 202 (1255)
T ss_pred CccccCCchHHHhhHhHhhhccccchhhhcCHHH-HHHhhhhhhhcCCChhh------HHH--HhcC----ccchhhhhh
Confidence 7777777666677777777777777777777753 55677777777777643 000 0000 001111111
Q ss_pred CCCCC--cccccCCCcccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCc
Q psy12210 238 HIKGQ--NILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNK 315 (405)
Q Consensus 238 ~l~~~--~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~ 315 (405)
.+.+. .+..++... ....+|..+|++.|++..
T Consensus 203 hms~TqRTl~N~Ptsl----------------------------------------------d~l~NL~dvDlS~N~Lp~ 236 (1255)
T KOG0444|consen 203 HMSNTQRTLDNIPTSL----------------------------------------------DDLHNLRDVDLSENNLPI 236 (1255)
T ss_pred hcccccchhhcCCCch----------------------------------------------hhhhhhhhccccccCCCc
Confidence 11111 112222111 011157888999999988
Q ss_pred CCCCCC--CCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCC--Cc
Q psy12210 316 VPILLP--EATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQND--IT 389 (405)
Q Consensus 316 ~p~~~~--~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~--l~ 389 (405)
+|..++ ++|+.|+++ |+|+.+. .....+.+ ++|+|+.|+++.+|. ++.++++|+.|++.+|+ +.
T Consensus 237 vPecly~l~~LrrLNLS~N~iteL~---------~~~~~W~~lEtLNlSrNQLt~LP~-avcKL~kL~kLy~n~NkL~Fe 306 (1255)
T KOG0444|consen 237 VPECLYKLRNLRRLNLSGNKITELN---------MTEGEWENLETLNLSRNQLTVLPD-AVCKLTKLTKLYANNNKLTFE 306 (1255)
T ss_pred chHHHhhhhhhheeccCcCceeeee---------ccHHHHhhhhhhccccchhccchH-HHhhhHHHHHHHhccCccccc
Confidence 887765 688899999 9998887 55667778 889999999998885 47778899999998888 55
Q ss_pred ccChhhcCCCccccC
Q psy12210 390 ELPPKAFANYKRLRR 404 (405)
Q Consensus 390 ~i~~~~f~~l~~L~~ 404 (405)
+||++ ++.|.+|++
T Consensus 307 GiPSG-IGKL~~Lev 320 (1255)
T KOG0444|consen 307 GIPSG-IGKLIQLEV 320 (1255)
T ss_pred CCccc-hhhhhhhHH
Confidence 77765 677776654
No 9
>KOG0472|consensus
Probab=99.85 E-value=9.4e-24 Score=188.85 Aligned_cols=379 Identities=19% Similarity=0.209 Sum_probs=228.5
Q ss_pred ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHH----------HhhCCCccccccccCCCcccCCccc
Q psy12210 2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRW----------LKRYPRLGLYTKCFAPSHIKGQNIL 71 (405)
Q Consensus 2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~----------~~~~~~~~~~~~~~~~~~l~~~~l~ 71 (405)
.|++++|++..+|+. ...+.+|+.++.++|.+....+-..-... ....|....+........+.+++++
T Consensus 95 ~l~vs~n~ls~lp~~-i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~ 173 (565)
T KOG0472|consen 95 SLNVSHNKLSELPEQ-IGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLK 173 (565)
T ss_pred HhhcccchHhhccHH-HhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchh
Confidence 578888888888875 57788888888888887653321111100 1112222222333445678889999
Q ss_pred ccCCCccccCCCCCCCCCCCCCCCCCCCCccc-cCceEEcCCCCccccCCCCC--CCccEEEccCCCCCCCCcccccCCC
Q psy12210 72 DIPEHEFKCSGPVEKPTGECAAEPSCPHPCRC-ADGIVDCREKGLNKVPILLP--EATTELRLEQNDITELPPKAFANYK 148 (405)
Q Consensus 72 ~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c-~~~~l~~~~n~l~~lp~~~~--~~L~~L~L~~n~i~~l~~~~~~~l~ 148 (405)
.++.+...+..........+......|+.+.= .+..+++..|++..+| .++ +.++.|+++.|.|+-++.+....+.
T Consensus 174 ~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~ 252 (565)
T KOG0472|consen 174 ALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLN 252 (565)
T ss_pred hCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccc
Confidence 98887666555555555555555556655543 3477889999999999 565 5789999999999999998778999
Q ss_pred CCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCcccc------ccC----chHHH
Q psy12210 149 RLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFIC------DCH----LSWLH 218 (405)
Q Consensus 149 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~------~~~----l~~~~ 218 (405)
++..||+..|+++.++ +...-+.+|.+||+++|.|+++|.. ++.+ .|+.|.+.||++.- .|. +|++.
T Consensus 253 ~l~vLDLRdNklke~P-de~clLrsL~rLDlSNN~is~Lp~s-Lgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLr 329 (565)
T KOG0472|consen 253 SLLVLDLRDNKLKEVP-DEICLLRSLERLDLSNNDISSLPYS-LGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLR 329 (565)
T ss_pred cceeeeccccccccCc-hHHHHhhhhhhhcccCCccccCCcc-cccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHH
Confidence 9999999999999997 5577789999999999999999985 6888 99999999999652 122 34444
Q ss_pred HHHhhcCCCCC----------------c---cccCCCCCCCCCcccccCCCcccccCccccc-cccceecccccC-----
Q psy12210 219 RWLKRYPRLGL----------------Y---TKCFAPSHIKGQNILDIPEHEFKCSGSSMET-RSKIYREECSTD----- 273 (405)
Q Consensus 219 ~~~~~~~~~~~----------------~---~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~----- 273 (405)
........... + ......+.+.+.+++.++..-|......... ....-.+.|+..
T Consensus 330 s~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~ 409 (565)
T KOG0472|consen 330 SKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVE 409 (565)
T ss_pred HhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHH
Confidence 32111110000 0 0012223444555555555444322100000 000000000000
Q ss_pred -----CCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCCC--CCceEEEEE-ecceeee--------
Q psy12210 274 -----FHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLP--EATTELTYM-VSIDRVD-------- 337 (405)
Q Consensus 274 -----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~~--~~l~~L~l~-n~i~~i~-------- 337 (405)
-.-+....+..+.+.....+. ++..|++++|.+..+|...+ ..++.|+++ |++..+|
T Consensus 410 lkelvT~l~lsnn~isfv~~~l~~l~-------kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~ 482 (565)
T KOG0472|consen 410 LKELVTDLVLSNNKISFVPLELSQLQ-------KLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQT 482 (565)
T ss_pred HHHHHHHHHhhcCccccchHHHHhhh-------cceeeecccchhhhcchhhhhhhhhheecccccccccchHHHhhHHH
Confidence 000000111111111111111 45666666666666665543 246666666 6555544
Q ss_pred -------ccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcccChh
Q psy12210 338 -------KVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPK 394 (405)
Q Consensus 338 -------~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~ 394 (405)
..-.....++.+.++.+ ..|||.+|.|..||+. +++|.+|++|+|.+|.|+ .|.+
T Consensus 483 lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~-LgnmtnL~hLeL~gNpfr-~Pr~ 545 (565)
T KOG0472|consen 483 LETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPI-LGNMTNLRHLELDGNPFR-QPRH 545 (565)
T ss_pred HHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChh-hccccceeEEEecCCccC-CCHH
Confidence 00011111455777777 8888888888888875 778888888888888887 5543
No 10
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.83 E-value=2.8e-20 Score=186.65 Aligned_cols=261 Identities=21% Similarity=0.262 Sum_probs=183.0
Q ss_pred ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210 2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS 81 (405)
Q Consensus 2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~ 81 (405)
.|+|++|+|+.+|+. +. ++|+.|++++|+++. +|.. ...+..+++++|+++.++... .
T Consensus 205 ~LdLs~~~LtsLP~~-l~--~~L~~L~L~~N~Lt~-------------LP~l---p~~Lk~LdLs~N~LtsLP~lp-~-- 262 (788)
T PRK15387 205 VLNVGESGLTTLPDC-LP--AHITTLVIPDNNLTS-------------LPAL---PPELRTLEVSGNQLTSLPVLP-P-- 262 (788)
T ss_pred EEEcCCCCCCcCCcc-hh--cCCCEEEccCCcCCC-------------CCCC---CCCCcEEEecCCccCcccCcc-c--
Confidence 589999999999885 32 479999999999872 2221 123456777888888776421 1
Q ss_pred CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcce
Q psy12210 82 GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQIS 161 (405)
Q Consensus 82 ~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~ 161 (405)
.++.+++++|.++.+|. ++..|+.|++++|.++.++. ..++|+.|++++|.++
T Consensus 263 ----------------------sL~~L~Ls~N~L~~Lp~-lp~~L~~L~Ls~N~Lt~LP~----~p~~L~~LdLS~N~L~ 315 (788)
T PRK15387 263 ----------------------GLLELSIFSNPLTHLPA-LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLA 315 (788)
T ss_pred ----------------------ccceeeccCCchhhhhh-chhhcCEEECcCCccccccc----cccccceeECCCCccc
Confidence 12778888888888886 55678888888888888775 2357888888888888
Q ss_pred eecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCC
Q psy12210 162 KVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKG 241 (405)
Q Consensus 162 ~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 241 (405)
.++. ...+|+.|++++|.++.+|. + ..+|+.|++++|.+... +... ..+..+.+.+
T Consensus 316 ~Lp~----lp~~L~~L~Ls~N~L~~LP~--l--p~~Lq~LdLS~N~Ls~L-------------P~lp---~~L~~L~Ls~ 371 (788)
T PRK15387 316 SLPA----LPSELCKLWAYNNQLTSLPT--L--PSGLQELSVSDNQLASL-------------PTLP---SELYKLWAYN 371 (788)
T ss_pred cCCC----CcccccccccccCccccccc--c--ccccceEecCCCccCCC-------------CCCC---cccceehhhc
Confidence 7753 12467788888888888774 1 25788888888876510 0000 0011111111
Q ss_pred CcccccCCCcccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCCC
Q psy12210 242 QNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLP 321 (405)
Q Consensus 242 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~~ 321 (405)
+.+..++.. ..+|+.|++++|+|+.+|. .+
T Consensus 372 --------------------------------------N~L~~LP~l-----------~~~L~~LdLs~N~Lt~LP~-l~ 401 (788)
T PRK15387 372 --------------------------------------NRLTSLPAL-----------PSGLKELIVSGNRLTSLPV-LP 401 (788)
T ss_pred --------------------------------------cccccCccc-----------ccccceEEecCCcccCCCC-cc
Confidence 222221110 0258999999999999885 45
Q ss_pred CCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcccChhhcCC
Q psy12210 322 EATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFAN 398 (405)
Q Consensus 322 ~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~ 398 (405)
+.++.|+++ |.++.+| . . ..+ +.|++++|+|+.+|.. +.++++|+.|+|++|.|++..+..+..
T Consensus 402 s~L~~LdLS~N~LssIP--------~-l---~~~L~~L~Ls~NqLt~LP~s-l~~L~~L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 402 SELKELMVSGNRLTSLP--------M-L---PSGLLSLSVYRNQLTRLPES-LIHLSSETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred cCCCEEEccCCcCCCCC--------c-c---hhhhhhhhhccCcccccChH-HhhccCCCeEECCCCCCCchHHHHHHH
Confidence 789999999 9999988 2 2 245 8899999999999865 788999999999999999877665533
No 11
>KOG0444|consensus
Probab=99.82 E-value=9.5e-23 Score=191.71 Aligned_cols=318 Identities=20% Similarity=0.263 Sum_probs=199.3
Q ss_pred cccCCCcCccCCchhhccccccceEEccCCcccccch-hhHHHHHHhhCCCccccccccCCCcccCCccc--ccCCCccc
Q psy12210 3 RTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCH-LSWLHRWLKRYPRLGLYTKCFAPSHIKGQNIL--DIPEHEFK 79 (405)
Q Consensus 3 L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~l~~~~~~ 79 (405)
|.|...++..+|. .++.+.+|.+|.+++|+++..-+ ++-+ .++..+.+..|+++ .+|.+.|.
T Consensus 37 LkLnrt~L~~vPe-EL~~lqkLEHLs~~HN~L~~vhGELs~L--------------p~LRsv~~R~N~LKnsGiP~diF~ 101 (1255)
T KOG0444|consen 37 LKLNRTKLEQVPE-ELSRLQKLEHLSMAHNQLISVHGELSDL--------------PRLRSVIVRDNNLKNSGIPTDIFR 101 (1255)
T ss_pred EEechhhhhhChH-HHHHHhhhhhhhhhhhhhHhhhhhhccc--------------hhhHHHhhhccccccCCCCchhcc
Confidence 4567778888776 47899999999999998763211 1111 11222333334443 46666664
Q ss_pred cCCCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCCCC--CCCccEEEccCCCCCCCCcccccCCCCCcEEecCC
Q psy12210 80 CSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILL--PEATTELRLEQNDITELPPKAFANYKRLRRIDLSK 157 (405)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~~~--~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~ 157 (405)
... ++++|+|+|+++++|..+ .++.-+|+|++|.|..||...|-++..|-.|++|+
T Consensus 102 l~d----------------------Lt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~ 159 (1255)
T KOG0444|consen 102 LKD----------------------LTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN 159 (1255)
T ss_pred ccc----------------------ceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc
Confidence 332 278888888888888776 46778888888888888888888888888888888
Q ss_pred CcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCC
Q psy12210 158 NQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPS 237 (405)
Q Consensus 158 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 237 (405)
|++..++|. .+.+.+|+.|.+++|.+....-..+..|++|+.|.+++..-+ +...+....+..++...
T Consensus 160 NrLe~LPPQ-~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRT-----------l~N~Ptsld~l~NL~dv 227 (1255)
T KOG0444|consen 160 NRLEMLPPQ-IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRT-----------LDNIPTSLDDLHNLRDV 227 (1255)
T ss_pred chhhhcCHH-HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccch-----------hhcCCCchhhhhhhhhc
Confidence 888888764 677888888888888777665444555677777777765422 11122222222333344
Q ss_pred CCCCCcccccCCCcccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCC
Q psy12210 238 HIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVP 317 (405)
Q Consensus 238 ~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p 317 (405)
++..+++..++...+.- ..+.-..++.+.|+.+....- .+. ++++|++++|+++.+|
T Consensus 228 DlS~N~Lp~vPecly~l---------------~~LrrLNLS~N~iteL~~~~~-~W~-------~lEtLNlSrNQLt~LP 284 (1255)
T KOG0444|consen 228 DLSENNLPIVPECLYKL---------------RNLRRLNLSGNKITELNMTEG-EWE-------NLETLNLSRNQLTVLP 284 (1255)
T ss_pred cccccCCCcchHHHhhh---------------hhhheeccCcCceeeeeccHH-HHh-------hhhhhccccchhccch
Confidence 44444444444433211 111122233333333322111 111 5888888888888888
Q ss_pred CCC--CCCceEEEEE-ecce--eeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCccc
Q psy12210 318 ILL--PEATTELTYM-VSID--RVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITEL 391 (405)
Q Consensus 318 ~~~--~~~l~~L~l~-n~i~--~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i 391 (405)
..+ .+.|+.|++. |++. +|| +.++.+.. +++..++|.+.-+|.+ +.+|+.|+.|.|++|++.++
T Consensus 285 ~avcKL~kL~kLy~n~NkL~FeGiP---------SGIGKL~~Levf~aanN~LElVPEg-lcRC~kL~kL~L~~NrLiTL 354 (1255)
T KOG0444|consen 285 DAVCKLTKLTKLYANNNKLTFEGIP---------SGIGKLIQLEVFHAANNKLELVPEG-LCRCVKLQKLKLDHNRLITL 354 (1255)
T ss_pred HHHhhhHHHHHHHhccCcccccCCc---------cchhhhhhhHHHHhhccccccCchh-hhhhHHHHHhcccccceeec
Confidence 665 3567777777 6643 555 56677777 7777777777766654 67777888888888887777
Q ss_pred ChhhcCCCcccc
Q psy12210 392 PPKAFANYKRLR 403 (405)
Q Consensus 392 ~~~~f~~l~~L~ 403 (405)
|.. +--|+.|.
T Consensus 355 Pea-IHlL~~l~ 365 (1255)
T KOG0444|consen 355 PEA-IHLLPDLK 365 (1255)
T ss_pred hhh-hhhcCCcc
Confidence 753 33344433
No 12
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.76 E-value=1.9e-18 Score=174.49 Aligned_cols=202 Identities=21% Similarity=0.317 Sum_probs=120.1
Q ss_pred ceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCc
Q psy12210 106 GIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLT 185 (405)
Q Consensus 106 ~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 185 (405)
+.+++++|+++++|..++.+++.|++++|.++.+|.. +. .+|+.|++++|.++.++. .+. .+|+.|++++|+++
T Consensus 223 ~~L~Ls~N~LtsLP~~l~~~L~~L~Ls~N~L~~LP~~-l~--s~L~~L~Ls~N~L~~LP~-~l~--~sL~~L~Ls~N~Lt 296 (754)
T PRK15370 223 KTLYANSNQLTSIPATLPDTIQEMELSINRITELPER-LP--SALQSLDLFHNKISCLPE-NLP--EELRYLSVYDNSIR 296 (754)
T ss_pred CEEECCCCccccCChhhhccccEEECcCCccCcCChh-Hh--CCCCEEECcCCccCcccc-ccC--CCCcEEECCCCccc
Confidence 5566666666666665555666666666666665543 22 356666666666665532 222 35666666666666
Q ss_pred ccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCccccccccc
Q psy12210 186 YLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKI 265 (405)
Q Consensus 186 ~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~ 265 (405)
.++... .++|+.|++++|.+... +... ...+..+.+.++.+..++....
T Consensus 297 ~LP~~l---p~sL~~L~Ls~N~Lt~L-------------P~~l--~~sL~~L~Ls~N~Lt~LP~~l~------------- 345 (754)
T PRK15370 297 TLPAHL---PSGITHLNVQSNSLTAL-------------PETL--PPGLKTLEAGENALTSLPASLP------------- 345 (754)
T ss_pred cCcccc---hhhHHHHHhcCCccccC-------------Cccc--cccceeccccCCccccCChhhc-------------
Confidence 655432 13455666666554310 0000 0001111111111111111000
Q ss_pred eecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCCCCCceEEEEE-ecceeeeccchhcc
Q psy12210 266 YREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYM-VSIDRVDKVLLYSY 344 (405)
Q Consensus 266 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~~~~l~~L~l~-n~i~~i~~~~~~~~ 344 (405)
.+|+.|++++|+++.+|..+++.|+.|+++ |.+..+|
T Consensus 346 -----------------------------------~sL~~L~Ls~N~L~~LP~~lp~~L~~LdLs~N~Lt~LP------- 383 (754)
T PRK15370 346 -----------------------------------PELQVLDVSKNQITVLPETLPPTITTLDVSRNALTNLP------- 383 (754)
T ss_pred -----------------------------------CcccEEECCCCCCCcCChhhcCCcCEEECCCCcCCCCC-------
Confidence 158999999999999998888899999999 9999888
Q ss_pred ccccccCCcc-ceEEecCCCCcccCcc---cccCCccCceeecccCCCcc
Q psy12210 345 ISNNFKRWTN-RSRRLEQNDITELPPK---AFANYKRLRRIRLEQNDITE 390 (405)
Q Consensus 345 ~~~~~~~l~~-~~L~L~~N~i~~i~~~---~~~~l~~L~~L~L~~N~l~~ 390 (405)
+. +. .. +.|++++|+|+.+|.. .+..++.+..|+|.+|.++.
T Consensus 384 -~~-l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 384 -EN-LP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred -Hh-HH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCccH
Confidence 32 21 35 8899999999988753 23445888999999999874
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.74 E-value=3.3e-18 Score=172.78 Aligned_cols=246 Identities=21% Similarity=0.231 Sum_probs=168.5
Q ss_pred ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210 2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS 81 (405)
Q Consensus 2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~ 81 (405)
.|++++++++++|... .++|+.|++++|+|+. +|.... .....+++++|.++.++.....
T Consensus 182 ~L~L~~~~LtsLP~~I---p~~L~~L~Ls~N~Lts-------------LP~~l~--~nL~~L~Ls~N~LtsLP~~l~~-- 241 (754)
T PRK15370 182 ELRLKILGLTTIPACI---PEQITTLILDNNELKS-------------LPENLQ--GNIKTLYANSNQLTSIPATLPD-- 241 (754)
T ss_pred EEEeCCCCcCcCCccc---ccCCcEEEecCCCCCc-------------CChhhc--cCCCEEECCCCccccCChhhhc--
Confidence 4788889999888642 3578999999998873 221111 1345567777777777653321
Q ss_pred CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcce
Q psy12210 82 GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQIS 161 (405)
Q Consensus 82 ~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~ 161 (405)
.++.+++++|.++.+|..++++|+.|++++|.++.+|.. +. .+|+.|++++|.++
T Consensus 242 ----------------------~L~~L~Ls~N~L~~LP~~l~s~L~~L~Ls~N~L~~LP~~-l~--~sL~~L~Ls~N~Lt 296 (754)
T PRK15370 242 ----------------------TIQEMELSINRITELPERLPSALQSLDLFHNKISCLPEN-LP--EELRYLSVYDNSIR 296 (754)
T ss_pred ----------------------cccEEECcCCccCcCChhHhCCCCEEECcCCccCccccc-cC--CCCcEEECCCCccc
Confidence 127888888888888888888888888888888887753 32 47888888888888
Q ss_pred eecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCC
Q psy12210 162 KVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKG 241 (405)
Q Consensus 162 ~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 241 (405)
.++.. +. .+|+.|++++|.++.++... .++|+.|++++|.+.+. +..+ ...+..+.+.+
T Consensus 297 ~LP~~-lp--~sL~~L~Ls~N~Lt~LP~~l---~~sL~~L~Ls~N~Lt~L------P~~l---------~~sL~~L~Ls~ 355 (754)
T PRK15370 297 TLPAH-LP--SGITHLNVQSNSLTALPETL---PPGLKTLEAGENALTSL------PASL---------PPELQVLDVSK 355 (754)
T ss_pred cCccc-ch--hhHHHHHhcCCccccCCccc---cccceeccccCCccccC------Chhh---------cCcccEEECCC
Confidence 77532 32 46888888888888887543 35788888888876521 0000 01122223333
Q ss_pred CcccccCCCcccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCCC
Q psy12210 242 QNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLP 321 (405)
Q Consensus 242 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~~ 321 (405)
+.+..++.... .+|+.|++++|.++.+|..++
T Consensus 356 N~L~~LP~~lp------------------------------------------------~~L~~LdLs~N~Lt~LP~~l~ 387 (754)
T PRK15370 356 NQITVLPETLP------------------------------------------------PTITTLDVSRNALTNLPENLP 387 (754)
T ss_pred CCCCcCChhhc------------------------------------------------CCcCEEECCCCcCCCCCHhHH
Confidence 33332222100 158999999999999998888
Q ss_pred CCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcc
Q psy12210 322 EATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITE 366 (405)
Q Consensus 322 ~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~ 366 (405)
..++.|+++ |++..+|... +..++..+. ..+++.+|.++.
T Consensus 388 ~sL~~LdLs~N~L~~LP~sl-----~~~~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 388 AALQIMQASRNNLVRLPESL-----PHFRGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred HHHHHHhhccCCcccCchhH-----HHHhhcCCCccEEEeeCCCccH
Confidence 889999999 9999887221 234455677 899999999873
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.73 E-value=1.6e-17 Score=167.02 Aligned_cols=238 Identities=22% Similarity=0.297 Sum_probs=165.6
Q ss_pred ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210 2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS 81 (405)
Q Consensus 2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~ 81 (405)
.|++++|+|+.+|. .+++|+.|++++|+|+. .|.. ......+.+..|.+..++... .
T Consensus 226 ~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~Lts-------------LP~l---p~sL~~L~Ls~N~L~~Lp~lp-~-- 282 (788)
T PRK15387 226 TLVIPDNNLTSLPA----LPPELRTLEVSGNQLTS-------------LPVL---PPGLLELSIFSNPLTHLPALP-S-- 282 (788)
T ss_pred EEEccCCcCCCCCC----CCCCCcEEEecCCccCc-------------ccCc---ccccceeeccCCchhhhhhch-h--
Confidence 57899999999886 36899999999999973 2211 122345667777777776421 1
Q ss_pred CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcce
Q psy12210 82 GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQIS 161 (405)
Q Consensus 82 ~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~ 161 (405)
.++.+++++|+++.+|. .+++|+.|++++|.++.++.. ...|+.|++++|.++
T Consensus 283 ----------------------~L~~L~Ls~N~Lt~LP~-~p~~L~~LdLS~N~L~~Lp~l----p~~L~~L~Ls~N~L~ 335 (788)
T PRK15387 283 ----------------------GLCKLWIFGNQLTSLPV-LPPGLQELSVSDNQLASLPAL----PSELCKLWAYNNQLT 335 (788)
T ss_pred ----------------------hcCEEECcCCccccccc-cccccceeECCCCccccCCCC----cccccccccccCccc
Confidence 12678888888888886 346788899999988887652 235778888888888
Q ss_pred eecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCC
Q psy12210 162 KVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKG 241 (405)
Q Consensus 162 ~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 241 (405)
.++. + ..+|+.|++++|+++.+|.. ..+|+.|++++|.+... +.. ...+....+.+
T Consensus 336 ~LP~--l--p~~Lq~LdLS~N~Ls~LP~l----p~~L~~L~Ls~N~L~~L-------------P~l---~~~L~~LdLs~ 391 (788)
T PRK15387 336 SLPT--L--PSGLQELSVSDNQLASLPTL----PSELYKLWAYNNRLTSL-------------PAL---PSGLKELIVSG 391 (788)
T ss_pred cccc--c--ccccceEecCCCccCCCCCC----CcccceehhhccccccC-------------ccc---ccccceEEecC
Confidence 7653 2 25788888888888888752 35677888888876510 000 00111222222
Q ss_pred CcccccCCCcccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCCC
Q psy12210 242 QNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLP 321 (405)
Q Consensus 242 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~~ 321 (405)
+.+..++.. ...++.|++++|+++.+|. .+
T Consensus 392 N~Lt~LP~l-------------------------------------------------~s~L~~LdLS~N~LssIP~-l~ 421 (788)
T PRK15387 392 NRLTSLPVL-------------------------------------------------PSELKELMVSGNRLTSLPM-LP 421 (788)
T ss_pred CcccCCCCc-------------------------------------------------ccCCCEEEccCCcCCCCCc-ch
Confidence 222222210 0158899999999999985 45
Q ss_pred CCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccc
Q psy12210 322 EATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAF 372 (405)
Q Consensus 322 ~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~ 372 (405)
..++.|+++ |.++.+| ..+..+++ +.|+|++|+|+...+..+
T Consensus 422 ~~L~~L~Ls~NqLt~LP---------~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 422 SGLLSLSVYRNQLTRLP---------ESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred hhhhhhhhccCcccccC---------hHHhhccCCCeEECCCCCCCchHHHHH
Confidence 688999999 9999988 66888999 999999999997665544
No 15
>KOG0618|consensus
Probab=99.70 E-value=5.6e-19 Score=173.26 Aligned_cols=241 Identities=20% Similarity=0.260 Sum_probs=163.1
Q ss_pred EEEccCCCCCCCCcccccCCCCCcEEe--------------------cCCCcceeecccccCCCCCCCEEEccCCcCccc
Q psy12210 128 ELRLEQNDITELPPKAFANYKRLRRID--------------------LSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYL 187 (405)
Q Consensus 128 ~L~L~~n~i~~l~~~~~~~l~~L~~L~--------------------ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l 187 (405)
.|+|++|.+.... ...+.+|+.+. .++|.++...+. ....+|++++++.|+++.+
T Consensus 182 ~ldLr~N~~~~~d---ls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~~l 256 (1081)
T KOG0618|consen 182 QLDLRYNEMEVLD---LSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLSNL 256 (1081)
T ss_pred eeecccchhhhhh---hhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccc--cccccceeeecchhhhhcc
Confidence 3788888777222 33444444444 444444433322 2346899999999999999
Q ss_pred ChhhhhcccCCcEEEeecCcccccc-------CchHHH---HHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCc
Q psy12210 188 PDGVFAELFRLRTLRISENSFICDC-------HLSWLH---RWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGS 257 (405)
Q Consensus 188 ~~~~f~~l~~L~~L~l~~N~l~~~~-------~l~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~ 257 (405)
+ +|...+.+|+.++...|.+.+.. .++.+. .-+...+.......++..+++..+++..++...+.-...
T Consensus 257 p-~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~ 335 (1081)
T KOG0618|consen 257 P-EWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNA 335 (1081)
T ss_pred h-HHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhH
Confidence 9 78899999999999999874211 111111 123344444455777888888888888888855533221
Q ss_pred cccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcC--CCC-CCCCceEEEEE-ecc
Q psy12210 258 SMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKV--PIL-LPEATTELTYM-VSI 333 (405)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~--p~~-~~~~l~~L~l~-n~i 333 (405)
. ..+...+.+++..++ ...+.-+|.|+.|.+.+|.++.- |.. -++.|+.|+++ |++
T Consensus 336 ~-------------l~~ln~s~n~l~~lp-------~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL 395 (1081)
T KOG0618|consen 336 S-------------LNTLNVSSNKLSTLP-------SYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRL 395 (1081)
T ss_pred H-------------HHHHhhhhccccccc-------cccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccc
Confidence 1 111222222222222 11223346788999999999863 322 25789999999 999
Q ss_pred eeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcccChhhcCCCccccCC
Q psy12210 334 DRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405 (405)
Q Consensus 334 ~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L 405 (405)
..+| ...+.++.. +.|+|++|+++.++.. ..+++.|+.|...+|+|...| .+..++.|+++
T Consensus 396 ~~fp--------as~~~kle~LeeL~LSGNkL~~Lp~t-va~~~~L~tL~ahsN~l~~fP--e~~~l~qL~~l 457 (1081)
T KOG0618|consen 396 NSFP--------ASKLRKLEELEELNLSGNKLTTLPDT-VANLGRLHTLRAHSNQLLSFP--ELAQLPQLKVL 457 (1081)
T ss_pred ccCC--------HHHHhchHHhHHHhcccchhhhhhHH-HHhhhhhHHHhhcCCceeech--hhhhcCcceEE
Confidence 9999 788999999 9999999999999954 788999999999999999998 37788777653
No 16
>KOG0618|consensus
Probab=99.63 E-value=9.4e-18 Score=164.79 Aligned_cols=101 Identities=22% Similarity=0.354 Sum_probs=86.1
Q ss_pred ceEEcCCCCccccCC-CCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcC
Q psy12210 106 GIVDCREKGLNKVPI-LLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNL 184 (405)
Q Consensus 106 ~~l~~~~n~l~~lp~-~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l 184 (405)
+.++.++|.++..-. -.|++++++++++|+++.+| ..++.+.+|+.+++.+|++..++ ......++|+.|++..|.+
T Consensus 222 ~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~~lp-~ri~~~~~L~~l~~~~nel 299 (1081)
T KOG0618|consen 222 TALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHNRLVALP-LRISRITSLVSLSAAYNEL 299 (1081)
T ss_pred heeeeccCcceeeccccccccceeeecchhhhhcch-HHHHhcccceEecccchhHHhhH-HHHhhhhhHHHHHhhhhhh
Confidence 788888888875544 34789999999999999999 56899999999999999997776 4466788999999999999
Q ss_pred cccChhhhhcccCCcEEEeecCccc
Q psy12210 185 TYLPDGVFAELFRLRTLRISENSFI 209 (405)
Q Consensus 185 ~~l~~~~f~~l~~L~~L~l~~N~l~ 209 (405)
+.+++. ..++.+|+.|++..|.+.
T Consensus 300 ~yip~~-le~~~sL~tLdL~~N~L~ 323 (1081)
T KOG0618|consen 300 EYIPPF-LEGLKSLRTLDLQSNNLP 323 (1081)
T ss_pred hhCCCc-ccccceeeeeeehhcccc
Confidence 999983 466899999999999875
No 17
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.59 E-value=6.7e-14 Score=150.57 Aligned_cols=172 Identities=16% Similarity=0.156 Sum_probs=102.9
Q ss_pred cccCCCcCccCCchhhccccccceEEccCCcccccchhhH-HHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210 3 RTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSW-LHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS 81 (405)
Q Consensus 3 L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~ 81 (405)
|+++.-.-..+...+|.+|.+|+.|.+.++.+.......+ ++..+..+ ......+.+.++.+..+|.....
T Consensus 539 l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~l------p~~Lr~L~~~~~~l~~lP~~f~~-- 610 (1153)
T PLN03210 539 LDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYL------PPKLRLLRWDKYPLRCMPSNFRP-- 610 (1153)
T ss_pred eccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhc------CcccEEEEecCCCCCCCCCcCCc--
Confidence 3444333335677889999999999997765421100000 00000000 11122234444555555433210
Q ss_pred CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCCCC--CCCccEEEccCCC-CCCCCcccccCCCCCcEEecCCC
Q psy12210 82 GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILL--PEATTELRLEQND-ITELPPKAFANYKRLRRIDLSKN 158 (405)
Q Consensus 82 ~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~~~--~~~L~~L~L~~n~-i~~l~~~~~~~l~~L~~L~ls~n 158 (405)
..++.+++.++.+..+|..+ .++|+.|+++++. ++.++. ++.+++|+.|++++|
T Consensus 611 ---------------------~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c 667 (1153)
T PLN03210 611 ---------------------ENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDC 667 (1153)
T ss_pred ---------------------cCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCC
Confidence 11377888888888777654 3578888887654 555553 677788888888877
Q ss_pred cceeecccccCCCCCCCEEEccCCc-CcccChhhhhcccCCcEEEeecCc
Q psy12210 159 QISKVAVDAFQGLKSLTSLTLNNNN-LTYLPDGVFAELFRLRTLRISENS 207 (405)
Q Consensus 159 ~l~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~f~~l~~L~~L~l~~N~ 207 (405)
......|..+..+++|+.|++++|. +..+|... .+++|+.|++++|.
T Consensus 668 ~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i--~l~sL~~L~Lsgc~ 715 (1153)
T PLN03210 668 SSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI--NLKSLYRLNLSGCS 715 (1153)
T ss_pred CCccccchhhhccCCCCEEeCCCCCCcCccCCcC--CCCCCCEEeCCCCC
Confidence 5444445667788888888888764 77777643 57788888887764
No 18
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.52 E-value=3.5e-13 Score=145.11 Aligned_cols=77 Identities=14% Similarity=0.247 Sum_probs=54.9
Q ss_pred cCceeecCCC-CCCcCCCCCCCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecC-CCCcccCcccccCCcc
Q psy12210 302 ADGIVDCREK-GLNKVPILLPEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQ-NDITELPPKAFANYKR 377 (405)
Q Consensus 302 ~l~~l~l~~n-~l~~~p~~~~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~-N~i~~i~~~~~~~l~~ 377 (405)
+|+.|++++| .++.+| ..+.+++.|+++ |.|+.+| .++..+++ +.|+|++ +++..++.. ...+++
T Consensus 826 sL~~L~Ls~c~~L~~~p-~~~~nL~~L~Ls~n~i~~iP---------~si~~l~~L~~L~L~~C~~L~~l~~~-~~~L~~ 894 (1153)
T PLN03210 826 SLESLDLSGCSRLRTFP-DISTNISDLNLSRTGIEEVP---------WWIEKFSNLSFLDMNGCNNLQRVSLN-ISKLKH 894 (1153)
T ss_pred ccCEEECCCCCcccccc-ccccccCEeECCCCCCccCh---------HHHhcCCCCCEEECCCCCCcCccCcc-cccccC
Confidence 4777888776 444444 335678888888 8888777 56777888 8888887 477777764 566778
Q ss_pred CceeecccCC-Cc
Q psy12210 378 LRRIRLEQND-IT 389 (405)
Q Consensus 378 L~~L~L~~N~-l~ 389 (405)
|+.+++++|. |+
T Consensus 895 L~~L~l~~C~~L~ 907 (1153)
T PLN03210 895 LETVDFSDCGALT 907 (1153)
T ss_pred CCeeecCCCcccc
Confidence 8888877775 44
No 19
>KOG0617|consensus
Probab=99.39 E-value=5.2e-15 Score=118.46 Aligned_cols=83 Identities=33% Similarity=0.525 Sum_probs=72.1
Q ss_pred CCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEe
Q psy12210 124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRI 203 (405)
Q Consensus 124 ~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l 203 (405)
++++.|-+++|+++.++|. +..+.+|+.|++++|+++.++ ..++.++.|+.|+++-|++..+|.+ |+.++-|+.||+
T Consensus 33 s~ITrLtLSHNKl~~vppn-ia~l~nlevln~~nnqie~lp-~~issl~klr~lnvgmnrl~~lprg-fgs~p~levldl 109 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVVPPN-IAELKNLEVLNLSNNQIEELP-TSISSLPKLRILNVGMNRLNILPRG-FGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhcccCceeecCCc-HHHhhhhhhhhcccchhhhcC-hhhhhchhhhheecchhhhhcCccc-cCCCchhhhhhc
Confidence 5788899999999999985 788999999999999998886 5588899999999999999888875 788999999999
Q ss_pred ecCccc
Q psy12210 204 SENSFI 209 (405)
Q Consensus 204 ~~N~l~ 209 (405)
.+|.+.
T Consensus 110 tynnl~ 115 (264)
T KOG0617|consen 110 TYNNLN 115 (264)
T ss_pred cccccc
Confidence 988754
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.30 E-value=1.8e-12 Score=120.85 Aligned_cols=163 Identities=20% Similarity=0.235 Sum_probs=84.7
Q ss_pred CccccCCCcCc-cCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccc
Q psy12210 1 MPRTLNNNNLT-YLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFK 79 (405)
Q Consensus 1 ~~L~l~~n~i~-~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~ 79 (405)
+.|+|..++++ .-....|..+.+|+.|+++++.++... ...+...+...+.. ..+.++.+.+...+.
T Consensus 1 ~~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~-~~~i~~~l~~~~~l-------~~l~l~~~~~~~~~~---- 68 (319)
T cd00116 1 LQLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEA-AKALASALRPQPSL-------KELCLSLNETGRIPR---- 68 (319)
T ss_pred CccccccCcccccchHHHHHHHhhccEEeecCCCCcHHH-HHHHHHHHhhCCCc-------eEEeccccccCCcch----
Confidence 46899999998 334456788899999999999986421 11222222221111 111222222211000
Q ss_pred cCCCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCCCC--CCCccEEEccCCCCCCCCcccccCCCC---CcEEe
Q psy12210 80 CSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILL--PEATTELRLEQNDITELPPKAFANYKR---LRRID 154 (405)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~~~--~~~L~~L~L~~n~i~~l~~~~~~~l~~---L~~L~ 154 (405)
.+..++..+ .++++.|++++|.+....+..+..+.+ |++|+
T Consensus 69 ----------------------------------~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ 114 (319)
T cd00116 69 ----------------------------------GLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELK 114 (319)
T ss_pred ----------------------------------HHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEE
Confidence 000111111 136677777777666544444444444 77777
Q ss_pred cCCCcceee----cccccCCC-CCCCEEEccCCcCcccC----hhhhhcccCCcEEEeecCccc
Q psy12210 155 LSKNQISKV----AVDAFQGL-KSLTSLTLNNNNLTYLP----DGVFAELFRLRTLRISENSFI 209 (405)
Q Consensus 155 ls~n~l~~~----~~~~~~~l-~~L~~L~l~~n~l~~l~----~~~f~~l~~L~~L~l~~N~l~ 209 (405)
+++|.+... ....+..+ ++|+.|++++|.++.-. ...+..+++|+.|++++|.+.
T Consensus 115 ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 178 (319)
T cd00116 115 LNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIG 178 (319)
T ss_pred eeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCc
Confidence 777766521 11234444 66777777777766211 123445566777777766543
No 21
>KOG0617|consensus
Probab=99.20 E-value=6.3e-13 Score=106.65 Aligned_cols=150 Identities=25% Similarity=0.303 Sum_probs=83.8
Q ss_pred cccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccCC
Q psy12210 3 RTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSG 82 (405)
Q Consensus 3 L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~ 82 (405)
|-|+||+++.++|. +.++.+|+.|++++|+|+ .+|...........+++..|.+..+|..+-.-.
T Consensus 38 LtLSHNKl~~vppn-ia~l~nlevln~~nnqie-------------~lp~~issl~klr~lnvgmnrl~~lprgfgs~p- 102 (264)
T KOG0617|consen 38 LTLSHNKLTVVPPN-IAELKNLEVLNLSNNQIE-------------ELPTSISSLPKLRILNVGMNRLNILPRGFGSFP- 102 (264)
T ss_pred hhcccCceeecCCc-HHHhhhhhhhhcccchhh-------------hcChhhhhchhhhheecchhhhhcCccccCCCc-
Confidence 66888888888886 578888888888888875 222222211222233444444444443321100
Q ss_pred CCCCCCCCCCCCCCCCCCccccCceEEcCCCCcc--ccCCCCC--CCccEEEccCCCCCCCCcccccCCCCCcEEecCCC
Q psy12210 83 PVEKPTGECAAEPSCPHPCRCADGIVDCREKGLN--KVPILLP--EATTELRLEQNDITELPPKAFANYKRLRRIDLSKN 158 (405)
Q Consensus 83 ~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~--~lp~~~~--~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n 158 (405)
++.++|+++|++. .+|-.++ +.++.|++++|.++-+|++ ++++++|+.|.+..|
T Consensus 103 ---------------------~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~d-vg~lt~lqil~lrdn 160 (264)
T KOG0617|consen 103 ---------------------ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPD-VGKLTNLQILSLRDN 160 (264)
T ss_pred ---------------------hhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChh-hhhhcceeEEeeccC
Confidence 1255566665553 3454443 3455566666666655553 566666666666666
Q ss_pred cceeecccccCCCCCCCEEEccCCcCcccChh
Q psy12210 159 QISKVAVDAFQGLKSLTSLTLNNNNLTYLPDG 190 (405)
Q Consensus 159 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~ 190 (405)
.+-+++ ..++.++.|++|.+.+|.++.+|++
T Consensus 161 dll~lp-keig~lt~lrelhiqgnrl~vlppe 191 (264)
T KOG0617|consen 161 DLLSLP-KEIGDLTRLRELHIQGNRLTVLPPE 191 (264)
T ss_pred chhhCc-HHHHHHHHHHHHhcccceeeecChh
Confidence 655554 3355566666666666666666653
No 22
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.12 E-value=7e-11 Score=98.38 Aligned_cols=87 Identities=30% Similarity=0.412 Sum_probs=42.2
Q ss_pred CCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcccCh-hhhhcccCCcEEE
Q psy12210 124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPD-GVFAELFRLRTLR 202 (405)
Q Consensus 124 ~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~~f~~l~~L~~L~ 202 (405)
.+++.|++++|.|+.++. +..++.|++|++++|.|+.+.+.....+++|+.|++++|+|..+.. ..++.+++|+.|+
T Consensus 42 ~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~ 119 (175)
T PF14580_consen 42 DKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLS 119 (175)
T ss_dssp TT--EEE-TTS--S--TT------TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE
T ss_pred cCCCEEECCCCCCccccC--ccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceee
Confidence 478889999999998874 7888999999999999998864322467899999999999887654 3467788999999
Q ss_pred eecCcccccc
Q psy12210 203 ISENSFICDC 212 (405)
Q Consensus 203 l~~N~l~~~~ 212 (405)
+.+||+....
T Consensus 120 L~~NPv~~~~ 129 (175)
T PF14580_consen 120 LEGNPVCEKK 129 (175)
T ss_dssp -TT-GGGGST
T ss_pred ccCCcccchh
Confidence 9999986443
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.10 E-value=1.1e-10 Score=108.92 Aligned_cols=85 Identities=20% Similarity=0.302 Sum_probs=59.5
Q ss_pred CccEEEccCCCCCCCCc----ccccCC-CCCcEEecCCCcceee----cccccCCCCCCCEEEccCCcCcccCh----hh
Q psy12210 125 ATTELRLEQNDITELPP----KAFANY-KRLRRIDLSKNQISKV----AVDAFQGLKSLTSLTLNNNNLTYLPD----GV 191 (405)
Q Consensus 125 ~L~~L~L~~n~i~~l~~----~~~~~l-~~L~~L~ls~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~l~~----~~ 191 (405)
+++.|++++|.++.... ..+..+ ++|++|++++|.++.. ....+..+.+|++|++++|.++.... ..
T Consensus 109 ~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~ 188 (319)
T cd00116 109 SLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEG 188 (319)
T ss_pred cccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHH
Confidence 48899999988874222 234566 7889999999988732 12456677889999999998874221 22
Q ss_pred hhcccCCcEEEeecCccc
Q psy12210 192 FAELFRLRTLRISENSFI 209 (405)
Q Consensus 192 f~~l~~L~~L~l~~N~l~ 209 (405)
+...++|+.|++++|.+.
T Consensus 189 l~~~~~L~~L~L~~n~i~ 206 (319)
T cd00116 189 LKANCNLEVLDLNNNGLT 206 (319)
T ss_pred HHhCCCCCEEeccCCccC
Confidence 344568999999888754
No 24
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.06 E-value=1.5e-10 Score=96.34 Aligned_cols=99 Identities=23% Similarity=0.255 Sum_probs=52.4
Q ss_pred ceEEcCCCCccccCCC-CCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecc-cccCCCCCCCEEEccCCc
Q psy12210 106 GIVDCREKGLNKVPIL-LPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAV-DAFQGLKSLTSLTLNNNN 183 (405)
Q Consensus 106 ~~l~~~~n~l~~lp~~-~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~ 183 (405)
+.+++++|.+++++.- -.+.|+.|++++|.|+.+.......+++|++|++++|+|..+.. ..+..+++|+.|++.+|.
T Consensus 45 ~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 45 EVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp -EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred CEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCc
Confidence 6777777877777631 13689999999999999976433568999999999999987643 457789999999999999
Q ss_pred CcccCh---hhhhcccCCcEEEee
Q psy12210 184 LTYLPD---GVFAELFRLRTLRIS 204 (405)
Q Consensus 184 l~~l~~---~~f~~l~~L~~L~l~ 204 (405)
++.... .++..+|+|+.||-.
T Consensus 125 v~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 125 VCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp GGGSTTHHHHHHHH-TT-SEETTE
T ss_pred ccchhhHHHHHHHHcChhheeCCE
Confidence 986653 456778999999754
No 25
>KOG0532|consensus
Probab=99.05 E-value=6.4e-12 Score=118.28 Aligned_cols=193 Identities=23% Similarity=0.337 Sum_probs=151.0
Q ss_pred ceEEcCCCCccccCCCCC----CCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccC
Q psy12210 106 GIVDCREKGLNKVPILLP----EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNN 181 (405)
Q Consensus 106 ~~l~~~~n~l~~lp~~~~----~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~ 181 (405)
-.+.+++.+++.+|..-. .-....+++.|++..+|.+ +..+..|+.+.+..|.+..++ .+...+..|++++++.
T Consensus 53 g~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~-~~~f~~Le~liLy~n~~r~ip-~~i~~L~~lt~l~ls~ 130 (722)
T KOG0532|consen 53 GRLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEE-ACAFVSLESLILYHNCIRTIP-EAICNLEALTFLDLSS 130 (722)
T ss_pred cccccccchhhcCCCccccccccchhhhhccccccccCchH-HHHHHHHHHHHHHhccceecc-hhhhhhhHHHHhhhcc
Confidence 456778888888885432 2446789999999999974 788889999999999999887 5688999999999999
Q ss_pred CcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCccccc
Q psy12210 182 NNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMET 261 (405)
Q Consensus 182 n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~ 261 (405)
|+++.++...+. --|+.+-+++|++.+ ++..+- ..
T Consensus 131 NqlS~lp~~lC~--lpLkvli~sNNkl~~------------------------------------lp~~ig-~~------ 165 (722)
T KOG0532|consen 131 NQLSHLPDGLCD--LPLKVLIVSNNKLTS------------------------------------LPEEIG-LL------ 165 (722)
T ss_pred chhhcCChhhhc--CcceeEEEecCcccc------------------------------------CCcccc-cc------
Confidence 999999987533 359999999998652 222111 00
Q ss_pred cccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCCC--CCceEEEEE-ecceeeec
Q psy12210 262 RSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLP--EATTELTYM-VSIDRVDK 338 (405)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~~--~~l~~L~l~-n~i~~i~~ 338 (405)
-.+..+|.+.|.+..+|..+- .+++.|.+. |++..+|
T Consensus 166 ---------------------------------------~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp- 205 (722)
T KOG0532|consen 166 ---------------------------------------PTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLP- 205 (722)
T ss_pred ---------------------------------------hhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCC-
Confidence 036778888888888875553 577788888 9988888
Q ss_pred cchhccccccccCCccceEEecCCCCcccCcccccCCccCceeecccCCCcccChh
Q psy12210 339 VLLYSYISNNFKRWTNRSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPK 394 (405)
Q Consensus 339 ~~~~~~~~~~~~~l~~~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~ 394 (405)
..+..++-..||++.|+|+.||.+ |.+|+.|++|-|.+|.|++-|.+
T Consensus 206 --------~El~~LpLi~lDfScNkis~iPv~-fr~m~~Lq~l~LenNPLqSPPAq 252 (722)
T KOG0532|consen 206 --------EELCSLPLIRLDFSCNKISYLPVD-FRKMRHLQVLQLENNPLQSPPAQ 252 (722)
T ss_pred --------HHHhCCceeeeecccCceeecchh-hhhhhhheeeeeccCCCCCChHH
Confidence 444566668899999999999976 88999999999999999988765
No 26
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.99 E-value=3.7e-10 Score=77.39 Aligned_cols=59 Identities=41% Similarity=0.678 Sum_probs=29.9
Q ss_pred CCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCc
Q psy12210 149 RLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENS 207 (405)
Q Consensus 149 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~ 207 (405)
+|++|++++|.++.+++.+|.++++|++|++++|.++.+++++|..+++|+.|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34445555555555544445555555555555555555555555555555555555543
No 27
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.97 E-value=5.5e-10 Score=76.54 Aligned_cols=60 Identities=42% Similarity=0.700 Sum_probs=57.6
Q ss_pred CccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcC
Q psy12210 125 ATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNL 184 (405)
Q Consensus 125 ~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l 184 (405)
++++|++++|+++.++++.|.++++|+.|++++|.++.+++++|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 689999999999999999999999999999999999999999999999999999999975
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.96 E-value=8.4e-10 Score=106.08 Aligned_cols=192 Identities=24% Similarity=0.348 Sum_probs=132.6
Q ss_pred eEEcCCCCccccCCCCC--CCccEEEccCCCCCCCCcccccCCC-CCcEEecCCCcceeecccccCCCCCCCEEEccCCc
Q psy12210 107 IVDCREKGLNKVPILLP--EATTELRLEQNDITELPPKAFANYK-RLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNN 183 (405)
Q Consensus 107 ~l~~~~n~l~~lp~~~~--~~L~~L~L~~n~i~~l~~~~~~~l~-~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~ 183 (405)
.++++.+.+..-+..+. +.++.|++.+|.++.+++. ..... +|+.|++++|.+..++ .....+++|+.|++++|+
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N~i~~l~-~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDNKIESLP-SPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccc-cccchhhcccccccccchhhhh-hhhhccccccccccCCch
Confidence 35666666633332222 4688899999999998874 45553 8999999999998885 347788999999999999
Q ss_pred CcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCccccccc
Q psy12210 184 LTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRS 263 (405)
Q Consensus 184 l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~ 263 (405)
+++++... ...+.|+.+++++|.+. .++...-..
T Consensus 175 l~~l~~~~-~~~~~L~~L~ls~N~i~------------------------------------~l~~~~~~~--------- 208 (394)
T COG4886 175 LSDLPKLL-SNLSNLNNLDLSGNKIS------------------------------------DLPPEIELL--------- 208 (394)
T ss_pred hhhhhhhh-hhhhhhhheeccCCccc------------------------------------cCchhhhhh---------
Confidence 99998742 36788999999998754 222210000
Q ss_pred cceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCC--CCCceEEEEE-ecceeeeccc
Q psy12210 264 KIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILL--PEATTELTYM-VSIDRVDKVL 340 (405)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~--~~~l~~L~l~-n~i~~i~~~~ 340 (405)
..++.+.+++|.+..++... ...+..+.+. |++..++
T Consensus 209 -------------------------------------~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~--- 248 (394)
T COG4886 209 -------------------------------------SALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLP--- 248 (394)
T ss_pred -------------------------------------hhhhhhhhcCCcceecchhhhhcccccccccCCceeeecc---
Confidence 03666777777544444332 3456666666 7777654
Q ss_pred hhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcccChh
Q psy12210 341 LYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPK 394 (405)
Q Consensus 341 ~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~ 394 (405)
..++.+++ +.|++++|.++.++. +..+.+++.|++++|.+..+++.
T Consensus 249 ------~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 249 ------ESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred ------chhccccccceecccccccccccc--ccccCccCEEeccCccccccchh
Confidence 56677777 888888888888876 67778888888888887766543
No 29
>KOG0532|consensus
Probab=98.94 E-value=5.2e-11 Score=112.26 Aligned_cols=108 Identities=20% Similarity=0.422 Sum_probs=95.4
Q ss_pred CCCccccCceEEcCCCCccccCCCCC--CCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCC
Q psy12210 98 PHPCRCADGIVDCREKGLNKVPILLP--EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLT 175 (405)
Q Consensus 98 p~~~~c~~~~l~~~~n~l~~lp~~~~--~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~ 175 (405)
++.|-|.++++=+++|+++.+|..+. ..+..|+.++|.+..+++ .++.+..|+.|.+..|++..++++ +..+ .|.
T Consensus 138 ~~lC~lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slps-ql~~l~slr~l~vrRn~l~~lp~E-l~~L-pLi 214 (722)
T KOG0532|consen 138 DGLCDLPLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPS-QLGYLTSLRDLNVRRNHLEDLPEE-LCSL-PLI 214 (722)
T ss_pred hhhhcCcceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchH-HhhhHHHHHHHHHhhhhhhhCCHH-HhCC-cee
Confidence 46677888999999999999998764 578889999999999997 489999999999999999999865 5544 488
Q ss_pred EEEccCCcCcccChhhhhcccCCcEEEeecCccc
Q psy12210 176 SLTLNNNNLTYLPDGVFAELFRLRTLRISENSFI 209 (405)
Q Consensus 176 ~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~ 209 (405)
+||++.|+++.||.. |..|..|+.|-+.+|++.
T Consensus 215 ~lDfScNkis~iPv~-fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 215 RLDFSCNKISYLPVD-FRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred eeecccCceeecchh-hhhhhhheeeeeccCCCC
Confidence 999999999999974 899999999999999987
No 30
>KOG1259|consensus
Probab=98.78 E-value=1.7e-09 Score=94.65 Aligned_cols=83 Identities=17% Similarity=0.155 Sum_probs=68.4
Q ss_pred cCceeecCCCCCCcCCCCC--CCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCc-ccccCCc
Q psy12210 302 ADGIVDCREKGLNKVPILL--PEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPP-KAFANYK 376 (405)
Q Consensus 302 ~l~~l~l~~n~l~~~p~~~--~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~-~~~~~l~ 376 (405)
+|..||+++|.++++..+. .-++++|.++ |.|+.+. .+..+-+ ..||++.|+|..+.. ..++++|
T Consensus 330 ~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LS----------GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LP 399 (490)
T KOG1259|consen 330 QLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETLS----------GLRKLYSLVNLDLSSNQIEELDEVNHIGNLP 399 (490)
T ss_pred cceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhhh----------hhHhhhhheeccccccchhhHHHhccccccc
Confidence 5888899998888776543 3589999999 9999886 4566777 999999999998864 4478899
Q ss_pred cCceeecccCCCcccChh
Q psy12210 377 RLRRIRLEQNDITELPPK 394 (405)
Q Consensus 377 ~L~~L~L~~N~l~~i~~~ 394 (405)
.|.++.|.+|.+..++..
T Consensus 400 CLE~l~L~~NPl~~~vdY 417 (490)
T KOG1259|consen 400 CLETLRLTGNPLAGSVDY 417 (490)
T ss_pred HHHHHhhcCCCccccchH
Confidence 999999999999988753
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.77 E-value=5e-09 Score=100.73 Aligned_cols=180 Identities=24% Similarity=0.350 Sum_probs=137.3
Q ss_pred EEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCC-CCCEEEccCCcCcccChhhhhcccCCcEEEeecC
Q psy12210 128 ELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLK-SLTSLTLNNNNLTYLPDGVFAELFRLRTLRISEN 206 (405)
Q Consensus 128 ~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N 206 (405)
.+++..+.+..... .+..+..+..|++.+|.++.+++. ..... +|+.|++++|++..++. ....+++|+.|+++.|
T Consensus 97 ~l~~~~~~~~~~~~-~~~~~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N~i~~l~~-~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNIS-ELLELTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDNKIESLPS-PLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCch-hhhcccceeEEecCCcccccCccc-cccchhhcccccccccchhhhhh-hhhccccccccccCCc
Confidence 57777887743332 256668899999999999999753 33343 89999999999999963 3578999999999999
Q ss_pred ccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCccccccccceecccccCCCCCCCCCCCCCC
Q psy12210 207 SFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPT 286 (405)
Q Consensus 207 ~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 286 (405)
++. +++......
T Consensus 174 ~l~------------------------------------~l~~~~~~~-------------------------------- 185 (394)
T COG4886 174 DLS------------------------------------DLPKLLSNL-------------------------------- 185 (394)
T ss_pred hhh------------------------------------hhhhhhhhh--------------------------------
Confidence 854 222211000
Q ss_pred CCCCCCCCCCCCccccCceeecCCCCCCcCCCC--CCCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCC
Q psy12210 287 GECAAEPSCPHPCRCADGIVDCREKGLNKVPIL--LPEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQN 362 (405)
Q Consensus 287 ~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~--~~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N 362 (405)
-.++.+++++|+++.+|.. .+..+.+|.++ |.+..++ ..+..+.. ..+.+++|
T Consensus 186 --------------~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~---------~~~~~~~~l~~l~l~~n 242 (394)
T COG4886 186 --------------SNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELL---------SSLSNLKNLSGLELSNN 242 (394)
T ss_pred --------------hhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecc---------hhhhhcccccccccCCc
Confidence 0488899999999999986 56679999999 8655554 56778888 88889999
Q ss_pred CCcccCcccccCCccCceeecccCCCcccChhhcCCCccccC
Q psy12210 363 DITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404 (405)
Q Consensus 363 ~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~ 404 (405)
++..++ ..++++++++.|++++|+++.++. +..+.+|+.
T Consensus 243 ~~~~~~-~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~ 281 (394)
T COG4886 243 KLEDLP-ESIGNLSNLETLDLSNNQISSISS--LGSLTNLRE 281 (394)
T ss_pred eeeecc-chhccccccceecccccccccccc--ccccCccCE
Confidence 998864 347888999999999999999987 666666654
No 32
>KOG1259|consensus
Probab=98.72 E-value=1.5e-09 Score=94.98 Aligned_cols=102 Identities=21% Similarity=0.237 Sum_probs=77.2
Q ss_pred ceEEcCCCCccccCC-CCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcC
Q psy12210 106 GIVDCREKGLNKVPI-LLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNL 184 (405)
Q Consensus 106 ~~l~~~~n~l~~lp~-~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l 184 (405)
+.+++++|+++.+.. ....+++.|||++|.++.+..+ -.++.+++.|.+++|.+.++. .++.+-+|..||+.+|+|
T Consensus 310 r~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gw-h~KLGNIKtL~La~N~iE~LS--GL~KLYSLvnLDl~~N~I 386 (490)
T KOG1259|consen 310 RRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGW-HLKLGNIKTLKLAQNKIETLS--GLRKLYSLVNLDLSSNQI 386 (490)
T ss_pred eEEeccccceeeehhhhhcccceEeecccchhHhhhhh-HhhhcCEeeeehhhhhHhhhh--hhHhhhhheeccccccch
Confidence 455555555555543 1235789999999999988865 467889999999999998774 367777888999999998
Q ss_pred cccCh-hhhhcccCCcEEEeecCcccc
Q psy12210 185 TYLPD-GVFAELFRLRTLRISENSFIC 210 (405)
Q Consensus 185 ~~l~~-~~f~~l~~L~~L~l~~N~l~~ 210 (405)
..+.. ..++++|.|+++.+.+|++..
T Consensus 387 e~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 387 EELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhHHHhcccccccHHHHHhhcCCCccc
Confidence 87764 235778889999999999763
No 33
>KOG0531|consensus
Probab=98.60 E-value=7.4e-09 Score=99.94 Aligned_cols=215 Identities=20% Similarity=0.215 Sum_probs=140.5
Q ss_pred ceEEcCCCCccccCC--CCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCc
Q psy12210 106 GIVDCREKGLNKVPI--LLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNN 183 (405)
Q Consensus 106 ~~l~~~~n~l~~lp~--~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~ 183 (405)
..+++.+|++..+.. ....+|++|++++|.|+.+.. +..+..|+.|++++|.|..+. .+..+.+|+.+++++|.
T Consensus 98 ~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~~--~~~~l~~L~~l~l~~n~ 173 (414)
T KOG0531|consen 98 EALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDIS--GLESLKSLKLLDLSYNR 173 (414)
T ss_pred eeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhheeccCcchhcc--CCccchhhhcccCCcch
Confidence 455555666655554 224689999999999999886 677888999999999999885 36668899999999999
Q ss_pred CcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCccccccc
Q psy12210 184 LTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRS 263 (405)
Q Consensus 184 l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~ 263 (405)
+..+.......+.+++.+++.+|.+...-.+......... .+..+.+
T Consensus 174 i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~--------------~l~~n~i------------------- 220 (414)
T KOG0531|consen 174 IVDIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLL--------------SLLDNKI------------------- 220 (414)
T ss_pred hhhhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHh--------------hcccccc-------------------
Confidence 9988872036688899999999986632222111111110 1111111
Q ss_pred cceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCC--CCCCceEEEEE-ecceeeeccc
Q psy12210 264 KIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPIL--LPEATTELTYM-VSIDRVDKVL 340 (405)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~--~~~~l~~L~l~-n~i~~i~~~~ 340 (405)
+.+.+... ..++.++.+++++|++..++.. .+..+..|++. |++..+.
T Consensus 221 -------------------~~~~~l~~-------~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~--- 271 (414)
T KOG0531|consen 221 -------------------SKLEGLNE-------LVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLE--- 271 (414)
T ss_pred -------------------eeccCccc-------chhHHHHHHhcccCccccccccccccccccccchhhccccccc---
Confidence 11111000 0001377888999999887533 34678888888 8888765
Q ss_pred hhccccccccCCcc-ceEEecCCCCcc---cCccc-ccCCccCceeecccCCCcccCh
Q psy12210 341 LYSYISNNFKRWTN-RSRRLEQNDITE---LPPKA-FANYKRLRRIRLEQNDITELPP 393 (405)
Q Consensus 341 ~~~~~~~~~~~l~~-~~L~L~~N~i~~---i~~~~-~~~l~~L~~L~L~~N~l~~i~~ 393 (405)
.+..... ..+.+..|.+.. +.... ....+.++.+.+.+|.+....+
T Consensus 272 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 272 -------GLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred -------cccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 3455556 777777777662 22221 4456889999999998877654
No 34
>KOG1859|consensus
Probab=98.59 E-value=2.9e-09 Score=103.35 Aligned_cols=164 Identities=23% Similarity=0.210 Sum_probs=89.8
Q ss_pred hccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccCCCCCCCCCCCCCCCCC
Q psy12210 18 FAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGPVEKPTGECAAEPSC 97 (405)
Q Consensus 18 f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 97 (405)
+..+.+|++|.+.++.+.+..++.-+..-++.+ +-.+.+..+...+..|.++...+..|+.
T Consensus 105 ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~L--------------IC~~Sl~Al~~v~ascggd~~ns~~Wn~----- 165 (1096)
T KOG1859|consen 105 IFPFRSLRVLELRGCDLSTAKGLQELRHQLEKL--------------ICHNSLDALRHVFASCGGDISNSPVWNK----- 165 (1096)
T ss_pred eccccceeeEEecCcchhhhhhhHHHHHhhhhh--------------hhhccHHHHHHHHHHhccccccchhhhh-----
Confidence 457889999999999998766666555443332 2223333343333334333322222221
Q ss_pred CCCccccCceEEcCCCCccccCCCC--CCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCC
Q psy12210 98 PHPCRCADGIVDCREKGLNKVPILL--PEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLT 175 (405)
Q Consensus 98 p~~~~c~~~~l~~~~n~l~~lp~~~--~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~ 175 (405)
+...+|++|.++.+...+ .+.++.|+|++|++++.. .+..+++|+.|||++|.+..++.-.-.++. |+
T Consensus 166 -------L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~ 235 (1096)
T KOG1859|consen 166 -------LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQ 235 (1096)
T ss_pred -------HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-he
Confidence 245556666665555433 345666666666666555 355666666666666666665543333444 55
Q ss_pred EEEccCCcCcccChhhhhcccCCcEEEeecCcccccc
Q psy12210 176 SLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDC 212 (405)
Q Consensus 176 ~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~ 212 (405)
.|.+++|.++.+.. +.++.+|+.||+++|-+....
T Consensus 236 ~L~lrnN~l~tL~g--ie~LksL~~LDlsyNll~~hs 270 (1096)
T KOG1859|consen 236 LLNLRNNALTTLRG--IENLKSLYGLDLSYNLLSEHS 270 (1096)
T ss_pred eeeecccHHHhhhh--HHhhhhhhccchhHhhhhcch
Confidence 56666665555543 345555555555555544433
No 35
>KOG3207|consensus
Probab=98.58 E-value=6.9e-09 Score=95.25 Aligned_cols=212 Identities=15% Similarity=0.169 Sum_probs=123.3
Q ss_pred CCccEEEccCCCCCCCCc-ccccCCCCCcEEecCCCcceeecc--cccCCCCCCCEEEccCCcCcccCh-hhhhcccCCc
Q psy12210 124 EATTELRLEQNDITELPP-KAFANYKRLRRIDLSKNQISKVAV--DAFQGLKSLTSLTLNNNNLTYLPD-GVFAELFRLR 199 (405)
Q Consensus 124 ~~L~~L~L~~n~i~~l~~-~~~~~l~~L~~L~ls~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~l~~-~~f~~l~~L~ 199 (405)
+.|+.+.|+...+..++. .....+++++.|++++|.+....+ .-...+++|+.|+++.|++..... ..-..++.|+
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK 200 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLK 200 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhh
Confidence 467777777777776653 345677788888888887665432 123456777788888877653222 1112456777
Q ss_pred EEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCccccccccceecccccCCCCCCC
Q psy12210 200 TLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNS 279 (405)
Q Consensus 200 ~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (405)
.|.++.+.++ -++....+...+.. ..+.+..+....+...
T Consensus 201 ~L~l~~CGls----~k~V~~~~~~fPsl-------~~L~L~~N~~~~~~~~----------------------------- 240 (505)
T KOG3207|consen 201 QLVLNSCGLS----WKDVQWILLTFPSL-------EVLYLEANEIILIKAT----------------------------- 240 (505)
T ss_pred eEEeccCCCC----HHHHHHHHHhCCcH-------HHhhhhcccccceecc-----------------------------
Confidence 7777775544 22222222222211 1111111110000000
Q ss_pred CCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCC----CCCCceEEEEE-ecceeeeccchhccccccccCCcc
Q psy12210 280 CPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPIL----LPEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN 354 (405)
Q Consensus 280 ~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~----~~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~ 354 (405)
+..-.|.|+.||+++|++-.++.. .++.|..|+++ +.|.++.....-. ..-...+++
T Consensus 241 ----------------~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s--~~kt~~f~k 302 (505)
T KOG3207|consen 241 ----------------STKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVES--LDKTHTFPK 302 (505)
T ss_pred ----------------hhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccc--hhhhccccc
Confidence 000113688999999998877632 36788889999 8888875111000 011345677
Q ss_pred -ceEEecCCCCcccCc-ccccCCccCceeecccCCCcccCh
Q psy12210 355 -RSRRLEQNDITELPP-KAFANYKRLRRIRLEQNDITELPP 393 (405)
Q Consensus 355 -~~L~L~~N~i~~i~~-~~~~~l~~L~~L~L~~N~l~~i~~ 393 (405)
+.|+++.|+|..++. ..+..+++|+.|.+..|.++.-..
T Consensus 303 L~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~~ 343 (505)
T KOG3207|consen 303 LEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKETD 343 (505)
T ss_pred ceeeecccCccccccccchhhccchhhhhhccccccccccc
Confidence 999999999977653 234557899999999988876554
No 36
>KOG0531|consensus
Probab=98.54 E-value=1e-08 Score=99.01 Aligned_cols=83 Identities=20% Similarity=0.214 Sum_probs=56.6
Q ss_pred cCceeecCCCCCCcCCCCC-CCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccC
Q psy12210 302 ADGIVDCREKGLNKVPILL-PEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRL 378 (405)
Q Consensus 302 ~l~~l~l~~n~l~~~p~~~-~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L 378 (405)
+++.+++.+|.+..+.... ...+..+.+. |++..+. +.......+ +.+++++|++..++. .+..+..+
T Consensus 187 ~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~--------~l~~~~~~~L~~l~l~~n~i~~~~~-~~~~~~~l 257 (414)
T KOG0531|consen 187 SLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLE--------GLNELVMLHLRELYLSGNRISRSPE-GLENLKNL 257 (414)
T ss_pred chHHHhccCCchhcccchHHHHHHHHhhcccccceecc--------CcccchhHHHHHHhcccCccccccc-cccccccc
Confidence 5778888888887664322 2344455777 8877765 111111115 788999999998862 36678899
Q ss_pred ceeecccCCCcccCh
Q psy12210 379 RRIRLEQNDITELPP 393 (405)
Q Consensus 379 ~~L~L~~N~l~~i~~ 393 (405)
..+++.+|++..+..
T Consensus 258 ~~l~~~~n~~~~~~~ 272 (414)
T KOG0531|consen 258 PVLDLSSNRISNLEG 272 (414)
T ss_pred cccchhhcccccccc
Confidence 999999998887664
No 37
>KOG3207|consensus
Probab=98.53 E-value=2.7e-08 Score=91.49 Aligned_cols=201 Identities=15% Similarity=0.145 Sum_probs=120.8
Q ss_pred ceEEcCCCCccccCC----CCCCCccEEEccCCCCCCCCc--ccccCCCCCcEEecCCCcceeeccc-ccCCCCCCCEEE
Q psy12210 106 GIVDCREKGLNKVPI----LLPEATTELRLEQNDITELPP--KAFANYKRLRRIDLSKNQISKVAVD-AFQGLKSLTSLT 178 (405)
Q Consensus 106 ~~l~~~~n~l~~lp~----~~~~~L~~L~L~~n~i~~l~~--~~~~~l~~L~~L~ls~n~l~~~~~~-~~~~l~~L~~L~ 178 (405)
+.+.+++......+. ...++++.|+|++|-+....+ .....+++|+.|+++.|.+...... .-..++.|+.|.
T Consensus 124 ~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~ 203 (505)
T KOG3207|consen 124 REISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLV 203 (505)
T ss_pred hheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEE
Confidence 555566655555552 123578889999888876544 2346788899999998887643321 112467788888
Q ss_pred ccCCcCcccCh-hhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCc
Q psy12210 179 LNNNNLTYLPD-GVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGS 257 (405)
Q Consensus 179 l~~n~l~~l~~-~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~ 257 (405)
++.|.++.-+- .....+|+|+.|++.+|... ............+..+++.++++-+.+....-.
T Consensus 204 l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~------------~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~--- 268 (505)
T KOG3207|consen 204 LNSCGLSWKDVQWILLTFPSLEVLYLEANEII------------LIKATSTKILQTLQELDLSNNNLIDFDQGYKVG--- 268 (505)
T ss_pred eccCCCCHHHHHHHHHhCCcHHHhhhhccccc------------ceecchhhhhhHHhhccccCCcccccccccccc---
Confidence 88888773332 23456788999998888421 001111111112333445444444333211100
Q ss_pred cccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcC--CC-------CCCCCceEEE
Q psy12210 258 SMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKV--PI-------LLPEATTELT 328 (405)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~--p~-------~~~~~l~~L~ 328 (405)
.+ -.|+.|.++.+.+.++ |. ..++.+++|+
T Consensus 269 --------------------------~l---------------~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~ 307 (505)
T KOG3207|consen 269 --------------------------TL---------------PGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLN 307 (505)
T ss_pred --------------------------cc---------------cchhhhhccccCcchhcCCCccchhhhcccccceeee
Confidence 00 0477788888888775 22 2478999999
Q ss_pred EE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCc
Q psy12210 329 YM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPP 369 (405)
Q Consensus 329 l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~ 369 (405)
+. |+|...+. ...+..+++ +.+....|.++.-..
T Consensus 308 i~~N~I~~w~s-------l~~l~~l~nlk~l~~~~n~ln~e~~ 343 (505)
T KOG3207|consen 308 ISENNIRDWRS-------LNHLRTLENLKHLRITLNYLNKETD 343 (505)
T ss_pred cccCccccccc-------cchhhccchhhhhhccccccccccc
Confidence 99 99977651 234556677 778877888875543
No 38
>PLN03150 hypothetical protein; Provisional
Probab=98.38 E-value=8.4e-07 Score=89.84 Aligned_cols=84 Identities=24% Similarity=0.336 Sum_probs=38.2
Q ss_pred ccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeec
Q psy12210 126 TTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISE 205 (405)
Q Consensus 126 L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~ 205 (405)
++.|+|++|.++...+..+.++++|+.|++++|.+.+..|..+..+++|+.|++++|.++...+..++.+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 34444444444443333444444444444444444443334444444444444444444433333344444444444444
Q ss_pred Cccc
Q psy12210 206 NSFI 209 (405)
Q Consensus 206 N~l~ 209 (405)
|.+.
T Consensus 500 N~l~ 503 (623)
T PLN03150 500 NSLS 503 (623)
T ss_pred Cccc
Confidence 4433
No 39
>KOG1909|consensus
Probab=98.34 E-value=1.6e-07 Score=84.07 Aligned_cols=84 Identities=14% Similarity=0.151 Sum_probs=54.4
Q ss_pred cCceeecCCCCCCcC-------CCCCCCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcc--
Q psy12210 302 ADGIVDCREKGLNKV-------PILLPEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPK-- 370 (405)
Q Consensus 302 ~l~~l~l~~n~l~~~-------p~~~~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~-- 370 (405)
.|++||+..|.++.- +...|+.++.++++ +.++.-.. ..+....-...+. +++.|.+|.|+.-...
T Consensus 214 ~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga---~a~~~al~~~~p~L~vl~l~gNeIt~da~~~l 290 (382)
T KOG1909|consen 214 HLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGA---IAFVDALKESAPSLEVLELAGNEITRDAALAL 290 (382)
T ss_pred cceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccH---HHHHHHHhccCCCCceeccCcchhHHHHHHHH
Confidence 577888888877642 12235678888888 76664331 1111122233567 9999999999864432
Q ss_pred --cccCCccCceeecccCCC
Q psy12210 371 --AFANYKRLRRIRLEQNDI 388 (405)
Q Consensus 371 --~~~~l~~L~~L~L~~N~l 388 (405)
+....+.|..|+|++|++
T Consensus 291 a~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 291 AACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHhcchhhHHhcCCcccc
Confidence 234468999999999998
No 40
>PLN03150 hypothetical protein; Provisional
Probab=98.28 E-value=1.5e-06 Score=88.09 Aligned_cols=107 Identities=21% Similarity=0.295 Sum_probs=88.4
Q ss_pred CceEEcCCCCcc-ccCCCC--CCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccC
Q psy12210 105 DGIVDCREKGLN-KVPILL--PEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNN 181 (405)
Q Consensus 105 ~~~l~~~~n~l~-~lp~~~--~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~ 181 (405)
...+++++++++ .+|..+ .++|+.|+|++|.+++..+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 367888999886 566544 36899999999999976666799999999999999999988888999999999999999
Q ss_pred CcCcccChhhhhc-ccCCcEEEeecCccccc
Q psy12210 182 NNLTYLPDGVFAE-LFRLRTLRISENSFICD 211 (405)
Q Consensus 182 n~l~~l~~~~f~~-l~~L~~L~l~~N~l~~~ 211 (405)
|.++...+..+.. ..++..+++.+|+..|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCG 530 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccC
Confidence 9998554445554 35678899999987654
No 41
>KOG1859|consensus
Probab=98.18 E-value=6e-08 Score=94.49 Aligned_cols=85 Identities=25% Similarity=0.356 Sum_probs=62.7
Q ss_pred CCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcccCh-hhhhcccCCcEEE
Q psy12210 124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPD-GVFAELFRLRTLR 202 (405)
Q Consensus 124 ~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~~f~~l~~L~~L~ 202 (405)
..|+.|||++|.+..++.-...++. |+.|.+++|.++++- .+.++.+|+.||+++|-|..... ..+..+..|+.|+
T Consensus 209 ~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~--gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~ 285 (1096)
T KOG1859|consen 209 PKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTLR--GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLW 285 (1096)
T ss_pred ccccccccccchhccccccchhhhh-heeeeecccHHHhhh--hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHh
Confidence 3688888888888888865555554 888888888888763 46678888888888887764432 1134466788899
Q ss_pred eecCccccc
Q psy12210 203 ISENSFICD 211 (405)
Q Consensus 203 l~~N~l~~~ 211 (405)
+.||++-|.
T Consensus 286 LeGNPl~c~ 294 (1096)
T KOG1859|consen 286 LEGNPLCCA 294 (1096)
T ss_pred hcCCccccC
Confidence 999998753
No 42
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.14 E-value=2.2e-06 Score=53.83 Aligned_cols=38 Identities=34% Similarity=0.686 Sum_probs=33.2
Q ss_pred ceEEecCCCCcccCcccccCCccCceeecccCCCcccCh
Q psy12210 355 RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPP 393 (405)
Q Consensus 355 ~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~ 393 (405)
++|++++|+|+.+++. ++++++|+.|++++|+|+++++
T Consensus 4 ~~L~l~~N~i~~l~~~-l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 4 EELDLSNNQITDLPPE-LSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp SEEEETSSS-SSHGGH-GTTCTTSSEEEETSSCCSBEGG
T ss_pred eEEEccCCCCcccCch-HhCCCCCCEEEecCCCCCCCcC
Confidence 7899999999999874 8899999999999999998764
No 43
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.00 E-value=3e-05 Score=61.71 Aligned_cols=63 Identities=30% Similarity=0.468 Sum_probs=27.6
Q ss_pred CCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEe
Q psy12210 139 LPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRI 203 (405)
Q Consensus 139 l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l 203 (405)
++..+|.++.+|+.+.+.. .+..+...+|.++++|+.+.+..+ +..++..+|..+++|+.+.+
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~ 65 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITF 65 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEE
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccc
Confidence 3444555555566655553 455555555555555555555543 55555555555555555554
No 44
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.93 E-value=3.8e-05 Score=61.14 Aligned_cols=127 Identities=24% Similarity=0.474 Sum_probs=64.7
Q ss_pred eecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCC
Q psy12210 162 KVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKG 241 (405)
Q Consensus 162 ~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 241 (405)
.++..+|.++.+|+.+.+.. .+..++..+|..+++|+.+.+..+
T Consensus 2 ~i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~----------------------------------- 45 (129)
T PF13306_consen 2 SIGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN----------------------------------- 45 (129)
T ss_dssp EE-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-----------------------------------
T ss_pred EECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-----------------------------------
Confidence 46667889999999999874 688899989998888998887653
Q ss_pred CcccccCCCcccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCCC
Q psy12210 242 QNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLP 321 (405)
Q Consensus 242 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~~ 321 (405)
+..+....|...
T Consensus 46 --~~~i~~~~F~~~------------------------------------------------------------------ 57 (129)
T PF13306_consen 46 --LTSIGDNAFSNC------------------------------------------------------------------ 57 (129)
T ss_dssp --TSCE-TTTTTT-------------------------------------------------------------------
T ss_pred --ccccceeeeecc------------------------------------------------------------------
Confidence 222333222100
Q ss_pred CCceEEEEEecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcccChhhcCCCc
Q psy12210 322 EATTELTYMVSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYK 400 (405)
Q Consensus 322 ~~l~~L~l~n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~ 400 (405)
+.++.+.+.+.+..++ ...|..+.. +.+++..+ ++.++..+|.++ .|+.+.+.. .++.|+..+|.+++
T Consensus 58 ~~l~~i~~~~~~~~i~--------~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~ 126 (129)
T PF13306_consen 58 KSLESITFPNNLKSIG--------DNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCT 126 (129)
T ss_dssp TT-EEEEETSTT-EE---------TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG---
T ss_pred cccccccccccccccc--------cccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccc
Confidence 1344455444444555 566777777 77777665 777777777776 777777775 67777777777777
Q ss_pred ccc
Q psy12210 401 RLR 403 (405)
Q Consensus 401 ~L~ 403 (405)
+|+
T Consensus 127 ~l~ 129 (129)
T PF13306_consen 127 KLK 129 (129)
T ss_dssp ---
T ss_pred cCC
Confidence 664
No 45
>KOG4658|consensus
Probab=97.89 E-value=8.8e-06 Score=84.71 Aligned_cols=77 Identities=23% Similarity=0.308 Sum_probs=55.6
Q ss_pred ceEEcCCC-CccccCCCCC--CCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCC
Q psy12210 106 GIVDCREK-GLNKVPILLP--EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNN 182 (405)
Q Consensus 106 ~~l~~~~n-~l~~lp~~~~--~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n 182 (405)
+++|+++| .+.++|..+. -+|++|+++++.|+.+|.+ +.+++.|.+|++..+.-....+.....+++|++|.+...
T Consensus 574 rVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~-l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 574 RVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSG-LGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred EEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchH-HHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 77777743 3577776654 4788888888888888874 788888888888877655444565666888888887555
Q ss_pred c
Q psy12210 183 N 183 (405)
Q Consensus 183 ~ 183 (405)
.
T Consensus 653 ~ 653 (889)
T KOG4658|consen 653 A 653 (889)
T ss_pred c
Confidence 4
No 46
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.87 E-value=1.6e-05 Score=49.92 Aligned_cols=38 Identities=42% Similarity=0.700 Sum_probs=20.2
Q ss_pred CccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceee
Q psy12210 125 ATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKV 163 (405)
Q Consensus 125 ~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~ 163 (405)
+|++|++++|.|+.+++ .+.++++|+.|++++|.++.+
T Consensus 2 ~L~~L~l~~N~i~~l~~-~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPP-ELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGG-HGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCc-hHhCCCCCCEEEecCCCCCCC
Confidence 45555566666555554 355555555555555555544
No 47
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=97.85 E-value=1.8e-05 Score=88.37 Aligned_cols=78 Identities=31% Similarity=0.609 Sum_probs=68.9
Q ss_pred EccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCC---CCccccCCCCCCCCCcccccCCCcccc
Q psy12210 178 TLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRL---GLYTKCFAPSHIKGQNILDIPEHEFKC 254 (405)
Q Consensus 178 ~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~l~~l~~~~~~~ 254 (405)
||++|+|+.++++.|..+++|+.|+|++|++.|+|+++||..|+...... .....|..|..+++..+.++....+.|
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~~~v~v~~~~~i~CasP~~LrG~~L~~l~~~d~~C 80 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEEKGVKVRQPEAALCAGPGALAGQPLLGIPLLDSGC 80 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHHHHHHHHhcCccccCCcccCCCCChHHCCCCcccCCcccCCC
Confidence 57899999999999999999999999999999999999999998887543 234679999999999999998877666
Q ss_pred c
Q psy12210 255 S 255 (405)
Q Consensus 255 ~ 255 (405)
.
T Consensus 81 ~ 81 (2740)
T TIGR00864 81 D 81 (2740)
T ss_pred C
Confidence 5
No 48
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.82 E-value=0.00011 Score=69.08 Aligned_cols=69 Identities=25% Similarity=0.506 Sum_probs=43.8
Q ss_pred ceEEcCCCCccccCCCCCCCccEEEccC-CCCCCCCcccccCCCCCcEEecCCC-cceeecccccCCCCCCCEEEccCCc
Q psy12210 106 GIVDCREKGLNKVPILLPEATTELRLEQ-NDITELPPKAFANYKRLRRIDLSKN-QISKVAVDAFQGLKSLTSLTLNNNN 183 (405)
Q Consensus 106 ~~l~~~~n~l~~lp~~~~~~L~~L~L~~-n~i~~l~~~~~~~l~~L~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~ 183 (405)
+.++++++.++++| .+|.+|+.|.+++ +.++.++. .+. .+|+.|.+++| .+..++ .+|+.|++..+.
T Consensus 55 ~~L~Is~c~L~sLP-~LP~sLtsL~Lsnc~nLtsLP~-~LP--~nLe~L~Ls~Cs~L~sLP-------~sLe~L~L~~n~ 123 (426)
T PRK15386 55 GRLYIKDCDIESLP-VLPNELTEITIENCNNLTTLPG-SIP--EGLEKLTVCHCPEISGLP-------ESVRSLEIKGSA 123 (426)
T ss_pred CEEEeCCCCCcccC-CCCCCCcEEEccCCCCcccCCc-hhh--hhhhheEccCcccccccc-------cccceEEeCCCC
Confidence 77888888888888 5777888888876 44444443 232 46777777776 554332 346666666554
Q ss_pred Cc
Q psy12210 184 LT 185 (405)
Q Consensus 184 l~ 185 (405)
..
T Consensus 124 ~~ 125 (426)
T PRK15386 124 TD 125 (426)
T ss_pred Cc
Confidence 43
No 49
>KOG1909|consensus
Probab=97.76 E-value=3.1e-05 Score=69.78 Aligned_cols=177 Identities=18% Similarity=0.157 Sum_probs=105.1
Q ss_pred hhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccCCCCCCCCCCCCCCCC
Q psy12210 17 VFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGPVEKPTGECAAEPS 96 (405)
Q Consensus 17 ~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 96 (405)
++...++|++||||+|.| |..+++-+..++++... ...+.+.++.+........... ++ .++ ..
T Consensus 87 aL~~~~~L~~ldLSDNA~-G~~g~~~l~~ll~s~~~-------L~eL~L~N~Glg~~ag~~l~~a-l~-----~l~--~~ 150 (382)
T KOG1909|consen 87 ALLGCPKLQKLDLSDNAF-GPKGIRGLEELLSSCTD-------LEELYLNNCGLGPEAGGRLGRA-LF-----ELA--VN 150 (382)
T ss_pred HHhcCCceeEeecccccc-CccchHHHHHHHHhccC-------HHHHhhhcCCCChhHHHHHHHH-HH-----HHH--HH
Confidence 456778899999999998 44444444444443222 2234444444443222211000 00 000 00
Q ss_pred CCCCccccCceEEcCCCCccccCCCC-------CCCccEEEccCCCCCCCCc----ccccCCCCCcEEecCCCcceeec-
Q psy12210 97 CPHPCRCADGIVDCREKGLNKVPILL-------PEATTELRLEQNDITELPP----KAFANYKRLRRIDLSKNQISKVA- 164 (405)
Q Consensus 97 ~p~~~~c~~~~l~~~~n~l~~lp~~~-------~~~L~~L~L~~n~i~~l~~----~~~~~l~~L~~L~ls~n~l~~~~- 164 (405)
-.-..+-.++++.|.+|.+...+... .+.+..+.+..|.|..-.. ..|..+++|+.|++..|.++...
T Consensus 151 kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs 230 (382)
T KOG1909|consen 151 KKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGS 230 (382)
T ss_pred hccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHH
Confidence 00000112488888888887776431 1478888888888875333 34677888888888888887543
Q ss_pred ---ccccCCCCCCCEEEccCCcCcccChhhh-----hcccCCcEEEeecCccc
Q psy12210 165 ---VDAFQGLKSLTSLTLNNNNLTYLPDGVF-----AELFRLRTLRISENSFI 209 (405)
Q Consensus 165 ---~~~~~~l~~L~~L~l~~n~l~~l~~~~f-----~~l~~L~~L~l~~N~l~ 209 (405)
...+..+++|+.|+++++.++.-...+| ...++|+.+.+.+|.++
T Consensus 231 ~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 231 VALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred HHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence 2456667788888888888876665444 24578888888888766
No 50
>KOG4579|consensus
Probab=97.75 E-value=1.4e-06 Score=67.84 Aligned_cols=101 Identities=19% Similarity=0.276 Sum_probs=76.2
Q ss_pred ceEEcCCCCccccCCCC---CCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCC
Q psy12210 106 GIVDCREKGLNKVPILL---PEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNN 182 (405)
Q Consensus 106 ~~l~~~~n~l~~lp~~~---~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n 182 (405)
..+++++|.+.++|..+ ++.++.|++++|.|..+|.. +..++.|+.|+++.|.+...+ ..+..+.++..|+..+|
T Consensus 56 ~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N~l~~~p-~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 56 TKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFNPLNAEP-RVIAPLIKLDMLDSPEN 133 (177)
T ss_pred EEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccCccccch-HHHHHHHhHHHhcCCCC
Confidence 66888999999998655 45788899999999999986 889999999999999988775 44555888888889999
Q ss_pred cCcccChhhhhcccCCcEEEeecCccc
Q psy12210 183 NLTYLPDGVFAELFRLRTLRISENSFI 209 (405)
Q Consensus 183 ~l~~l~~~~f~~l~~L~~L~l~~N~l~ 209 (405)
.+..++-+.|. -......++.++++.
T Consensus 134 a~~eid~dl~~-s~~~al~~lgnepl~ 159 (177)
T KOG4579|consen 134 ARAEIDVDLFY-SSLPALIKLGNEPLG 159 (177)
T ss_pred ccccCcHHHhc-cccHHHHHhcCCccc
Confidence 99988877543 122222334555554
No 51
>KOG4579|consensus
Probab=97.63 E-value=4.7e-06 Score=65.06 Aligned_cols=85 Identities=20% Similarity=0.237 Sum_probs=73.6
Q ss_pred cCceeecCCCCCCcCCCCC---CCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCc
Q psy12210 302 ADGIVDCREKGLNKVPILL---PEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYK 376 (405)
Q Consensus 302 ~l~~l~l~~n~l~~~p~~~---~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~ 376 (405)
.+...++++|.++.+|..+ |+.++.|+++ |+|+++| ..++.++. +.++++.|.+...+.- +..+.
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvP---------eE~Aam~aLr~lNl~~N~l~~~p~v-i~~L~ 123 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVP---------EELAAMPALRSLNLRFNPLNAEPRV-IAPLI 123 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhch---------HHHhhhHHhhhcccccCccccchHH-HHHHH
Confidence 3778899999999998654 6789999999 9999998 45899999 9999999999999865 44599
Q ss_pred cCceeecccCCCcccChhhc
Q psy12210 377 RLRRIRLEQNDITELPPKAF 396 (405)
Q Consensus 377 ~L~~L~L~~N~l~~i~~~~f 396 (405)
++..|+..+|.+..|+...|
T Consensus 124 ~l~~Lds~~na~~eid~dl~ 143 (177)
T KOG4579|consen 124 KLDMLDSPENARAEIDVDLF 143 (177)
T ss_pred hHHHhcCCCCccccCcHHHh
Confidence 99999999999999987643
No 52
>KOG2982|consensus
Probab=97.54 E-value=1.6e-05 Score=70.15 Aligned_cols=83 Identities=27% Similarity=0.360 Sum_probs=54.9
Q ss_pred CCccEEEccCCCCCCCCc--ccccCCCCCcEEecCCCcceeeccccc-CCCCCCCEEEccCCcCc--ccChhhhhcccCC
Q psy12210 124 EATTELRLEQNDITELPP--KAFANYKRLRRIDLSKNQISKVAVDAF-QGLKSLTSLTLNNNNLT--YLPDGVFAELFRL 198 (405)
Q Consensus 124 ~~L~~L~L~~n~i~~l~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~--~l~~~~f~~l~~L 198 (405)
+.++.++|.+|.|++=.. ..+.++++|+.|+++.|.+.... +.+ ....+|+.|-+.+..+. ... .....+|++
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I-~~lp~p~~nl~~lVLNgT~L~w~~~~-s~l~~lP~v 148 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI-KSLPLPLKNLRVLVLNGTGLSWTQST-SSLDDLPKV 148 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc-ccCcccccceEEEEEcCCCCChhhhh-hhhhcchhh
Confidence 567788888888875221 24577888888888888877544 223 24567777777777654 222 234567777
Q ss_pred cEEEeecCcc
Q psy12210 199 RTLRISENSF 208 (405)
Q Consensus 199 ~~L~l~~N~l 208 (405)
+.|.++.|.+
T Consensus 149 telHmS~N~~ 158 (418)
T KOG2982|consen 149 TELHMSDNSL 158 (418)
T ss_pred hhhhhccchh
Confidence 8888887753
No 53
>KOG1644|consensus
Probab=97.50 E-value=0.00013 Score=60.88 Aligned_cols=100 Identities=26% Similarity=0.268 Sum_probs=69.2
Q ss_pred ceEEcCCCCccccCCCC-CCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecc-cccCCCCCCCEEEccCCc
Q psy12210 106 GIVDCREKGLNKVPILL-PEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAV-DAFQGLKSLTSLTLNNNN 183 (405)
Q Consensus 106 ~~l~~~~n~l~~lp~~~-~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~ 183 (405)
..+|+++|.+..++.-. ++.|.+|.+..|.|+.|.+.--.-+++|+.|.+.+|.|..+.. ..+..++.|++|.+-+|.
T Consensus 45 d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 45 DAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNP 124 (233)
T ss_pred ceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCc
Confidence 56778888877766421 3578888888888888887644455678888888887765431 335677788888888887
Q ss_pred CcccC---hhhhhcccCCcEEEeec
Q psy12210 184 LTYLP---DGVFAELFRLRTLRISE 205 (405)
Q Consensus 184 l~~l~---~~~f~~l~~L~~L~l~~ 205 (405)
+++.. .-++..+++|+.||++.
T Consensus 125 v~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 125 VEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred hhcccCceeEEEEecCcceEeehhh
Confidence 76443 23445677888888765
No 54
>KOG1644|consensus
Probab=97.43 E-value=0.00034 Score=58.54 Aligned_cols=103 Identities=23% Similarity=0.288 Sum_probs=78.9
Q ss_pred CceEEcCCCCccccCC--CCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCC
Q psy12210 105 DGIVDCREKGLNKVPI--LLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNN 182 (405)
Q Consensus 105 ~~~l~~~~n~l~~lp~--~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n 182 (405)
.+.+++.+.++..+-. ........+|+++|.+..++. |..+..|..|.+++|.|+.|.|.--.-+++|..|.+.+|
T Consensus 21 e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN 98 (233)
T ss_pred ccccccccccccchhhccccccccceecccccchhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence 3566666666544432 112466789999999998885 899999999999999999999876666788999999999
Q ss_pred cCcccCh-hhhhcccCCcEEEeecCccc
Q psy12210 183 NLTYLPD-GVFAELFRLRTLRISENSFI 209 (405)
Q Consensus 183 ~l~~l~~-~~f~~l~~L~~L~l~~N~l~ 209 (405)
.|..+.. .-+..+++|+.|.+-+|+..
T Consensus 99 si~~l~dl~pLa~~p~L~~Ltll~Npv~ 126 (233)
T KOG1644|consen 99 SIQELGDLDPLASCPKLEYLTLLGNPVE 126 (233)
T ss_pred chhhhhhcchhccCCccceeeecCCchh
Confidence 8765442 11567899999999999865
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.27 E-value=0.0015 Score=61.60 Aligned_cols=71 Identities=23% Similarity=0.370 Sum_probs=48.2
Q ss_pred CCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCC-cCcccChhhhhcccCCcEEE
Q psy12210 124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNN-NLTYLPDGVFAELFRLRTLR 202 (405)
Q Consensus 124 ~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~~~f~~l~~L~~L~ 202 (405)
..++.|++++|.++.+|. +. .+|++|.++++.--...|+.+ ..+|++|++++| .+..+|. +|+.|+
T Consensus 52 ~~l~~L~Is~c~L~sLP~--LP--~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~-------sLe~L~ 118 (426)
T PRK15386 52 RASGRLYIKDCDIESLPV--LP--NELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE-------SVRSLE 118 (426)
T ss_pred cCCCEEEeCCCCCcccCC--CC--CCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc-------ccceEE
Confidence 468899999998888872 32 368999998743333333434 368899999888 5665543 467777
Q ss_pred eecCc
Q psy12210 203 ISENS 207 (405)
Q Consensus 203 l~~N~ 207 (405)
+..+.
T Consensus 119 L~~n~ 123 (426)
T PRK15386 119 IKGSA 123 (426)
T ss_pred eCCCC
Confidence 76544
No 56
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=97.18 E-value=0.00043 Score=77.88 Aligned_cols=78 Identities=31% Similarity=0.602 Sum_probs=65.6
Q ss_pred ccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCcc---ccccccCCCcccCCcccccCCCcccc
Q psy12210 4 TLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLG---LYTKCFAPSHIKGQNILDIPEHEFKC 80 (405)
Q Consensus 4 ~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~l~~~~l~~l~~~~~~~ 80 (405)
||++|+|+.|++++|..+++|+.|+|++|+|.++|++.|+..|++...... ....|..+..+.+..+.+++...|.|
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~~~v~v~~~~~i~CasP~~LrG~~L~~l~~~d~~C 80 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEEKGVKVRQPEAALCAGPGALAGQPLLGIPLLDSGC 80 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHHHHHHHHhcCccccCCcccCCCCChHHCCCCcccCCcccCCC
Confidence 799999999999999999999999999999999999999999998764322 23568888888888888887655444
Q ss_pred C
Q psy12210 81 S 81 (405)
Q Consensus 81 ~ 81 (405)
.
T Consensus 81 ~ 81 (2740)
T TIGR00864 81 D 81 (2740)
T ss_pred C
Confidence 3
No 57
>PF01462 LRRNT: Leucine rich repeat N-terminal domain; InterPro: IPR000372 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. LRRs are often flanked by cysteine-rich domains: an N-terminal LRR domain and a C-terminal LRR domain (IPR000483 from INTERPRO). This entry represents the N-terminal LRR domain. ; PDB: 3E6J_A 1W8A_A 2V9S_C 2V9T_B 3TWI_D 3ZYN_A 3ZYO_A 1OOK_G 1QYY_G 1SQ0_B ....
Probab=96.83 E-value=0.00073 Score=37.65 Aligned_cols=28 Identities=50% Similarity=1.144 Sum_probs=23.2
Q ss_pred CCCCCccccCceEEcCCCCccccCCCCC
Q psy12210 96 SCPHPCRCADGIVDCREKGLNKVPILLP 123 (405)
Q Consensus 96 ~~p~~~~c~~~~l~~~~n~l~~lp~~~~ 123 (405)
.||..|.|....++|++.+|+++|..+|
T Consensus 1 ~CP~~C~C~~~~V~C~~~~L~~vP~~lP 28 (28)
T PF01462_consen 1 ACPRPCTCSGLTVDCSGRGLTAVPSDLP 28 (28)
T ss_dssp SSETTSEEETTEEEETTSS-SSS-STS-
T ss_pred CcCCCCEecCCEeECCCCCCCccCCCCc
Confidence 4899999999999999999999998764
No 58
>KOG2123|consensus
Probab=96.75 E-value=8.9e-05 Score=64.93 Aligned_cols=95 Identities=27% Similarity=0.353 Sum_probs=72.6
Q ss_pred ceEEcCCCCccccCCCC-CCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecc-cccCCCCCCCEEEccCCc
Q psy12210 106 GIVDCREKGLNKVPILL-PEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAV-DAFQGLKSLTSLTLNNNN 183 (405)
Q Consensus 106 ~~l~~~~n~l~~lp~~~-~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~ 183 (405)
+.++|.+.+|..+.... -+.+.+|.|+-|+|+.+.+ +..+++|++|+|..|.|.++.. ..+.++++|+.|.+..|.
T Consensus 22 kKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 22 KKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENP 99 (388)
T ss_pred hhhcccCCCccHHHHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCC
Confidence 67788888888776543 2578899999999998886 7889999999999999988753 457788889999998887
Q ss_pred CcccC-----hhhhhcccCCcEEE
Q psy12210 184 LTYLP-----DGVFAELFRLRTLR 202 (405)
Q Consensus 184 l~~l~-----~~~f~~l~~L~~L~ 202 (405)
-..-. ..++..+|+|+.||
T Consensus 100 Cc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 100 CCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cccccchhHHHHHHHHcccchhcc
Confidence 54222 24556678888775
No 59
>KOG4658|consensus
Probab=96.57 E-value=0.002 Score=67.61 Aligned_cols=103 Identities=20% Similarity=0.256 Sum_probs=66.4
Q ss_pred cCceEEcCCCCccccCCCC-CCCccEEEccCCC--CCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEcc
Q psy12210 104 ADGIVDCREKGLNKVPILL-PEATTELRLEQND--ITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLN 180 (405)
Q Consensus 104 ~~~~l~~~~n~l~~lp~~~-~~~L~~L~L~~n~--i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~ 180 (405)
..+.+..-+|.+..++... .+.+++|-+..|. +..++.+.|..++.|..||+++|.-....|..++++-+|++|+++
T Consensus 524 ~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~ 603 (889)
T KOG4658|consen 524 SVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLS 603 (889)
T ss_pred heeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccccc
Confidence 3456666666666665443 2356677777765 666666667777777777777665544455666777777777777
Q ss_pred CCcCcccChhhhhcccCCcEEEeecCc
Q psy12210 181 NNNLTYLPDGVFAELFRLRTLRISENS 207 (405)
Q Consensus 181 ~n~l~~l~~~~f~~l~~L~~L~l~~N~ 207 (405)
+..++++|.+ ++++.+|.+|++..+.
T Consensus 604 ~t~I~~LP~~-l~~Lk~L~~Lnl~~~~ 629 (889)
T KOG4658|consen 604 DTGISHLPSG-LGNLKKLIYLNLEVTG 629 (889)
T ss_pred CCCccccchH-HHHHHhhheecccccc
Confidence 7777777764 4666667666666543
No 60
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.56 E-value=0.0018 Score=56.75 Aligned_cols=87 Identities=14% Similarity=0.020 Sum_probs=51.3
Q ss_pred cCceeecCCCCCCcCCCC-------CCCCceEEEEE-ecceeeeccchhcccccccc--CCcc-ceEEecCCCCcccC-c
Q psy12210 302 ADGIVDCREKGLNKVPIL-------LPEATTELTYM-VSIDRVDKVLLYSYISNNFK--RWTN-RSRRLEQNDITELP-P 369 (405)
Q Consensus 302 ~l~~l~l~~n~l~~~p~~-------~~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~--~l~~-~~L~L~~N~i~~i~-~ 369 (405)
+|++||+..|.++..-.. -|+.++.|.+. +-++.-..... ...|. ..++ ..|-..+|.+..-. .
T Consensus 215 ~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v----~~~f~e~~~p~l~~L~~~Yne~~~~~i~ 290 (388)
T COG5238 215 SLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSV----LRRFNEKFVPNLMPLPGDYNERRGGIIL 290 (388)
T ss_pred cceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHH----HHHhhhhcCCCccccccchhhhcCceee
Confidence 588999999988754221 24567888777 65554331110 01122 2355 67777788554211 1
Q ss_pred ----ccc--cCCccCceeecccCCCcccC
Q psy12210 370 ----KAF--ANYKRLRRIRLEQNDITELP 392 (405)
Q Consensus 370 ----~~~--~~l~~L~~L~L~~N~l~~i~ 392 (405)
..| ..+|-|..|-+.+|+|....
T Consensus 291 ~~~l~~~e~~~~p~L~~le~ngNr~~E~~ 319 (388)
T COG5238 291 DISLNEFEQDAVPLLVDLERNGNRIKELA 319 (388)
T ss_pred eechhhhhhcccHHHHHHHHccCcchhHH
Confidence 112 45788888888889887654
No 61
>smart00013 LRRNT Leucine rich repeat N-terminal domain.
Probab=96.44 E-value=0.0038 Score=36.32 Aligned_cols=30 Identities=47% Similarity=1.152 Sum_probs=27.2
Q ss_pred CCCCCccccCceEEcCCCCccccCCCCCCC
Q psy12210 96 SCPHPCRCADGIVDCREKGLNKVPILLPEA 125 (405)
Q Consensus 96 ~~p~~~~c~~~~l~~~~n~l~~lp~~~~~~ 125 (405)
.||..|.|....++|++.+|+++|..+|..
T Consensus 1 ~CP~~C~C~~~~V~C~~~~L~~vP~~iP~~ 30 (33)
T smart00013 1 ACPAPCNCSGTAVDCSGRGLTEVPLDLPPD 30 (33)
T ss_pred CcCCCCEECCCEeEeCCCCcCccCCCCCcc
Confidence 499999999999999999999999988753
No 62
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.34 E-value=0.0012 Score=34.43 Aligned_cols=22 Identities=32% Similarity=0.650 Sum_probs=14.3
Q ss_pred cCceeecccCCCcccChhhcCCC
Q psy12210 377 RLRRIRLEQNDITELPPKAFANY 399 (405)
Q Consensus 377 ~L~~L~L~~N~l~~i~~~~f~~l 399 (405)
+|+.|||++|+|+.+|+. |++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~-~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSS-FSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTT-TTT-
T ss_pred CccEEECCCCcCEeCChh-hcCC
Confidence 467777777777777665 6543
No 63
>KOG2123|consensus
Probab=96.30 E-value=0.00019 Score=62.94 Aligned_cols=80 Identities=28% Similarity=0.316 Sum_probs=70.7
Q ss_pred CCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcccCh-hhhhcccCCcEEE
Q psy12210 124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPD-GVFAELFRLRTLR 202 (405)
Q Consensus 124 ~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~~f~~l~~L~~L~ 202 (405)
.+++.|++-++.+++|.- ..+|+.|+.|.|+-|.|+++.| |..|++|++|.+..|.|.++.+ ..+.++++|+.|.
T Consensus 19 ~~vkKLNcwg~~L~DIsi--c~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDISI--CEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHhhhhcccCCCccHHHH--HHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 478889999999998874 5789999999999999999965 8899999999999999999986 3346788999999
Q ss_pred eecCc
Q psy12210 203 ISENS 207 (405)
Q Consensus 203 l~~N~ 207 (405)
+..|+
T Consensus 95 L~ENP 99 (388)
T KOG2123|consen 95 LDENP 99 (388)
T ss_pred hccCC
Confidence 99998
No 64
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.18 E-value=0.0019 Score=56.67 Aligned_cols=89 Identities=17% Similarity=0.100 Sum_probs=59.4
Q ss_pred cCceeecCCCCCCcCCCCC------C-CCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCc---
Q psy12210 302 ADGIVDCREKGLNKVPILL------P-EATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPP--- 369 (405)
Q Consensus 302 ~l~~l~l~~n~l~~~p~~~------~-~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~--- 369 (405)
.|++++|..|++...|... + .+++.+.+. |.|.- .+..++.-..+..+++ ++|||..|-++....
T Consensus 158 ~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrp---egv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~L 234 (388)
T COG5238 158 KLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRP---EGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYL 234 (388)
T ss_pred CceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCc---chhHHHHHHHHHHhCcceeeeccccchhhhhHHHH
Confidence 4888999999888766432 1 378888888 87663 2223332334455677 889999998875543
Q ss_pred -ccccCCccCceeecccCCCcccCh
Q psy12210 370 -KAFANYKRLRRIRLEQNDITELPP 393 (405)
Q Consensus 370 -~~~~~l~~L~~L~L~~N~l~~i~~ 393 (405)
.++..++.|+.|.+..|.++.-..
T Consensus 235 a~al~~W~~lrEL~lnDClls~~G~ 259 (388)
T COG5238 235 ADALCEWNLLRELRLNDCLLSNEGV 259 (388)
T ss_pred HHHhcccchhhhccccchhhccccH
Confidence 334556788888888887776543
No 65
>KOG2120|consensus
Probab=95.94 E-value=0.00019 Score=63.59 Aligned_cols=101 Identities=20% Similarity=0.250 Sum_probs=43.8
Q ss_pred ceEEcCCCCccccCC--CCCCCccEEEccCCCCCCCC-cccccCC-CCCcEEecCCCcceeec-ccccCCCCCCCEEEcc
Q psy12210 106 GIVDCREKGLNKVPI--LLPEATTELRLEQNDITELP-PKAFANY-KRLRRIDLSKNQISKVA-VDAFQGLKSLTSLTLN 180 (405)
Q Consensus 106 ~~l~~~~n~l~~lp~--~~~~~L~~L~L~~n~i~~l~-~~~~~~l-~~L~~L~ls~n~l~~~~-~~~~~~l~~L~~L~l~ 180 (405)
+.+|+.+..+...-- -.-..+.++.+....+...- .+.+.-. ..|+.+|+++..|+.-. ..-+..+..|+.|++.
T Consensus 139 ~~lDl~~r~i~p~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlE 218 (419)
T KOG2120|consen 139 QTLDLTGRNIHPDVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLE 218 (419)
T ss_pred eeeccCCCccChhHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhcccc
Confidence 667777666543210 01134444444433332210 0111111 23555555555544210 1223345555555555
Q ss_pred CCcCcccChhhhhcccCCcEEEeecC
Q psy12210 181 NNNLTYLPDGVFAELFRLRTLRISEN 206 (405)
Q Consensus 181 ~n~l~~l~~~~f~~l~~L~~L~l~~N 206 (405)
++++.+-....+++-.+|+.++++..
T Consensus 219 g~~LdD~I~~~iAkN~~L~~lnlsm~ 244 (419)
T KOG2120|consen 219 GLRLDDPIVNTIAKNSNLVRLNLSMC 244 (419)
T ss_pred ccccCcHHHHHHhccccceeeccccc
Confidence 55555443344444555555555553
No 66
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=95.86 E-value=0.0067 Score=33.08 Aligned_cols=23 Identities=39% Similarity=0.764 Sum_probs=19.5
Q ss_pred CccCceeecccCCCcccChhhcC
Q psy12210 375 YKRLRRIRLEQNDITELPPKAFA 397 (405)
Q Consensus 375 l~~L~~L~L~~N~l~~i~~~~f~ 397 (405)
+++|+.|+|++|+|+.++..+|+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 46789999999999999988776
No 67
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=95.86 E-value=0.0067 Score=33.08 Aligned_cols=23 Identities=39% Similarity=0.764 Sum_probs=19.5
Q ss_pred CccCceeecccCCCcccChhhcC
Q psy12210 375 YKRLRRIRLEQNDITELPPKAFA 397 (405)
Q Consensus 375 l~~L~~L~L~~N~l~~i~~~~f~ 397 (405)
+++|+.|+|++|+|+.++..+|+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 46789999999999999988776
No 68
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.31 E-value=0.01 Score=28.73 Aligned_cols=17 Identities=41% Similarity=0.710 Sum_probs=9.6
Q ss_pred ccCceeecccCCCcccC
Q psy12210 376 KRLRRIRLEQNDITELP 392 (405)
Q Consensus 376 ~~L~~L~L~~N~l~~i~ 392 (405)
++|+.|+|++|+|+++|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 46778888888777664
No 69
>KOG2739|consensus
Probab=95.24 E-value=0.011 Score=51.59 Aligned_cols=80 Identities=24% Similarity=0.305 Sum_probs=42.2
Q ss_pred CccEEEccCCCCCCCCcccccCCCCCcEEecCCC--cceeecccccCCCCCCCEEEccCCcCcc---cChhhhhcccCCc
Q psy12210 125 ATTELRLEQNDITELPPKAFANYKRLRRIDLSKN--QISKVAVDAFQGLKSLTSLTLNNNNLTY---LPDGVFAELFRLR 199 (405)
Q Consensus 125 ~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n--~l~~~~~~~~~~l~~L~~L~l~~n~l~~---l~~~~f~~l~~L~ 199 (405)
.++.+++.+..++.+.. |..+++|++|.++.| ++..-.+-....+++|+++++++|+|.. +.+ ...+.+|.
T Consensus 44 ~le~ls~~n~gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p--l~~l~nL~ 119 (260)
T KOG2739|consen 44 ELELLSVINVGLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP--LKELENLK 119 (260)
T ss_pred chhhhhhhccceeeccc--CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch--hhhhcchh
Confidence 44455555555554442 556666666666666 3332222223344666666666666553 222 34455566
Q ss_pred EEEeecCcc
Q psy12210 200 TLRISENSF 208 (405)
Q Consensus 200 ~L~l~~N~l 208 (405)
.|++..+..
T Consensus 120 ~Ldl~n~~~ 128 (260)
T KOG2739|consen 120 SLDLFNCSV 128 (260)
T ss_pred hhhcccCCc
Confidence 666666553
No 70
>KOG2982|consensus
Probab=95.13 E-value=0.0047 Score=55.00 Aligned_cols=225 Identities=15% Similarity=0.189 Sum_probs=122.9
Q ss_pred ccEEEccCCCCCCCCcc-cc-cCCCCCcEEecCCCcceeec--ccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEE
Q psy12210 126 TTELRLEQNDITELPPK-AF-ANYKRLRRIDLSKNQISKVA--VDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTL 201 (405)
Q Consensus 126 L~~L~L~~n~i~~l~~~-~~-~~l~~L~~L~ls~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L 201 (405)
+..+.+.++.|..+... .| ...++++++++.+|.|.... ..-+..++.|+.|+++.|++.......-....+|+.+
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l 126 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL 126 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence 44566667777766542 23 35678999999999987532 1235678999999999999874432221356789999
Q ss_pred EeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCccccccccceecccccCCCCCCCCC
Q psy12210 202 RISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCP 281 (405)
Q Consensus 202 ~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (405)
-+.+..+.-.|- +..+...+ .....++..+....+..+.- |... ++
T Consensus 127 VLNgT~L~w~~~----~s~l~~lP-------~vtelHmS~N~~rq~n~Dd~-c~e~--------~s-------------- 172 (418)
T KOG2982|consen 127 VLNGTGLSWTQS----TSSLDDLP-------KVTELHMSDNSLRQLNLDDN-CIED--------WS-------------- 172 (418)
T ss_pred EEcCCCCChhhh----hhhhhcch-------hhhhhhhccchhhhhccccc-cccc--------cc--------------
Confidence 998876542111 00010000 01111111111111111100 0000 00
Q ss_pred CCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCCCCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEe
Q psy12210 282 VEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRL 359 (405)
Q Consensus 282 i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L 359 (405)
..-.......| +..+..+.|++. ..||++..+-+. +.++.... ...+..++. .-|+|
T Consensus 173 ---~~v~tlh~~~c-------~~~~w~~~~~l~----r~Fpnv~sv~v~e~PlK~~s~-------ek~se~~p~~~~LnL 231 (418)
T KOG2982|consen 173 ---TEVLTLHQLPC-------LEQLWLNKNKLS----RIFPNVNSVFVCEGPLKTESS-------EKGSEPFPSLSCLNL 231 (418)
T ss_pred ---hhhhhhhcCCc-------HHHHHHHHHhHH----hhcccchheeeecCcccchhh-------cccCCCCCcchhhhh
Confidence 00000000000 111222223332 346788888888 87777651 234566777 88999
Q ss_pred cCCCCcccCc-ccccCCccCceeecccCCCcccChh------hcCCCccccCC
Q psy12210 360 EQNDITELPP-KAFANYKRLRRIRLEQNDITELPPK------AFANYKRLRRM 405 (405)
Q Consensus 360 ~~N~i~~i~~-~~~~~l~~L~~L~L~~N~l~~i~~~------~f~~l~~L~~L 405 (405)
+.|+|.+... +++.+++.|+.|.+++|.+.+--.. .++.|+++++|
T Consensus 232 ~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vL 284 (418)
T KOG2982|consen 232 GANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVL 284 (418)
T ss_pred cccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEe
Confidence 9999997753 5688999999999999987653321 24456665543
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.93 E-value=0.018 Score=29.98 Aligned_cols=15 Identities=33% Similarity=0.612 Sum_probs=7.3
Q ss_pred CcEEecCCCcceeec
Q psy12210 150 LRRIDLSKNQISKVA 164 (405)
Q Consensus 150 L~~L~ls~n~l~~~~ 164 (405)
|++|++++|.++.++
T Consensus 2 L~~Ldls~n~l~~ip 16 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIP 16 (22)
T ss_dssp ESEEEETSSEESEEG
T ss_pred ccEEECCCCcCEeCC
Confidence 445555555555443
No 72
>KOG3665|consensus
Probab=94.78 E-value=0.039 Score=56.52 Aligned_cols=83 Identities=23% Similarity=0.269 Sum_probs=56.0
Q ss_pred CCccEEEccCCCCCCCCc-ccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcc-cChhhhhcccCCcEE
Q psy12210 124 EATTELRLEQNDITELPP-KAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY-LPDGVFAELFRLRTL 201 (405)
Q Consensus 124 ~~L~~L~L~~n~i~~l~~-~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~f~~l~~L~~L 201 (405)
++|+.|.+++-.+..-.- ....++++|..||+|+..++.+ ...+.+++|+.|.+.+=.+.. -.-..+-.+++|+.|
T Consensus 148 PsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vL 225 (699)
T KOG3665|consen 148 PSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVL 225 (699)
T ss_pred cccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCee
Confidence 578888888766654331 2345678888888888888877 447778888888776655553 212223448888888
Q ss_pred EeecCcc
Q psy12210 202 RISENSF 208 (405)
Q Consensus 202 ~l~~N~l 208 (405)
|++....
T Consensus 226 DIS~~~~ 232 (699)
T KOG3665|consen 226 DISRDKN 232 (699)
T ss_pred ecccccc
Confidence 8887653
No 73
>KOG3665|consensus
Probab=94.35 E-value=0.027 Score=57.70 Aligned_cols=84 Identities=17% Similarity=0.150 Sum_probs=63.7
Q ss_pred CCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeec-ccccCCCCCCCEEEccCCcCcccC------hhhhhccc
Q psy12210 124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVA-VDAFQGLKSLTSLTLNNNNLTYLP------DGVFAELF 196 (405)
Q Consensus 124 ~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~l~------~~~f~~l~ 196 (405)
++|..||++++.++.+.. ++++++|+.|.+.+=.+..-. -..+-.+++|+.||++......-+ -+....+|
T Consensus 173 pNL~sLDIS~TnI~nl~G--IS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~Lp 250 (699)
T KOG3665|consen 173 PNLRSLDISGTNISNLSG--ISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLP 250 (699)
T ss_pred CccceeecCCCCccCcHH--HhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCc
Confidence 589999999999999953 789999999988876665421 134667999999999888654333 12234688
Q ss_pred CCcEEEeecCccc
Q psy12210 197 RLRTLRISENSFI 209 (405)
Q Consensus 197 ~L~~L~l~~N~l~ 209 (405)
.|+.||.++..+.
T Consensus 251 eLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 251 ELRFLDCSGTDIN 263 (699)
T ss_pred cccEEecCCcchh
Confidence 9999999987654
No 74
>KOG2739|consensus
Probab=94.35 E-value=0.03 Score=49.02 Aligned_cols=80 Identities=28% Similarity=0.347 Sum_probs=59.6
Q ss_pred CCccEEEccCC--CCCC-CCcccccCCCCCcEEecCCCcceeec-ccccCCCCCCCEEEccCCcCcccC---hhhhhccc
Q psy12210 124 EATTELRLEQN--DITE-LPPKAFANYKRLRRIDLSKNQISKVA-VDAFQGLKSLTSLTLNNNNLTYLP---DGVFAELF 196 (405)
Q Consensus 124 ~~L~~L~L~~n--~i~~-l~~~~~~~l~~L~~L~ls~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~l~---~~~f~~l~ 196 (405)
++|+.|.++.| ++.. ++. ...++++|+.+++++|+++.+. ...+..+.+|..|++.+|..+.+. ...|.-++
T Consensus 65 p~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~ 143 (260)
T KOG2739|consen 65 PKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLP 143 (260)
T ss_pred chhhhhcccCCccccccccee-hhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhh
Confidence 48999999999 5553 333 2456699999999999998532 134667788889999998766554 57788888
Q ss_pred CCcEEEee
Q psy12210 197 RLRTLRIS 204 (405)
Q Consensus 197 ~L~~L~l~ 204 (405)
+|..++-.
T Consensus 144 ~L~~LD~~ 151 (260)
T KOG2739|consen 144 SLKYLDGC 151 (260)
T ss_pred hhcccccc
Confidence 88888643
No 75
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.27 E-value=0.045 Score=29.72 Aligned_cols=23 Identities=48% Similarity=0.775 Sum_probs=16.8
Q ss_pred CCCCCEEEccCCcCcccChhhhh
Q psy12210 171 LKSLTSLTLNNNNLTYLPDGVFA 193 (405)
Q Consensus 171 l~~L~~L~l~~n~l~~l~~~~f~ 193 (405)
+++|+.|++++|.|+.+++++|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 35677788888888888777664
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.27 E-value=0.045 Score=29.72 Aligned_cols=23 Identities=48% Similarity=0.775 Sum_probs=16.8
Q ss_pred CCCCCEEEccCCcCcccChhhhh
Q psy12210 171 LKSLTSLTLNNNNLTYLPDGVFA 193 (405)
Q Consensus 171 l~~L~~L~l~~n~l~~l~~~~f~ 193 (405)
+++|+.|++++|.|+.+++++|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 35677788888888888777664
No 77
>KOG2120|consensus
Probab=94.11 E-value=0.00058 Score=60.59 Aligned_cols=83 Identities=18% Similarity=0.150 Sum_probs=44.0
Q ss_pred CccEEEccCCCCCCCCc-ccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCc-CcccCh-hhhhcccCCcEE
Q psy12210 125 ATTELRLEQNDITELPP-KAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNN-LTYLPD-GVFAELFRLRTL 201 (405)
Q Consensus 125 ~L~~L~L~~n~i~~l~~-~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~-~~f~~l~~L~~L 201 (405)
.++.+||+...|+.-.- ..++.+++|+.|.+.++++..-....+..-.+|+.|+++.+. ++.-.. -.|..++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 46666666665553221 234555666666666666655444445555666666665554 443221 124455566666
Q ss_pred EeecCc
Q psy12210 202 RISENS 207 (405)
Q Consensus 202 ~l~~N~ 207 (405)
+++++-
T Consensus 266 NlsWc~ 271 (419)
T KOG2120|consen 266 NLSWCF 271 (419)
T ss_pred CchHhh
Confidence 665543
No 78
>PF01462 LRRNT: Leucine rich repeat N-terminal domain; InterPro: IPR000372 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. LRRs are often flanked by cysteine-rich domains: an N-terminal LRR domain and a C-terminal LRR domain (IPR000483 from INTERPRO). This entry represents the N-terminal LRR domain. ; PDB: 3E6J_A 1W8A_A 2V9S_C 2V9T_B 3TWI_D 3ZYN_A 3ZYO_A 1OOK_G 1QYY_G 1SQ0_B ....
Probab=93.23 E-value=0.079 Score=29.40 Aligned_cols=28 Identities=50% Similarity=1.144 Sum_probs=22.4
Q ss_pred CCCCCccccCceeecCCCCCCcCCCCCC
Q psy12210 294 SCPHPCRCADGIVDCREKGLNKVPILLP 321 (405)
Q Consensus 294 ~~~~~~~~~l~~l~l~~n~l~~~p~~~~ 321 (405)
.||..|.|...++++++-+|+++|..+|
T Consensus 1 ~CP~~C~C~~~~V~C~~~~L~~vP~~lP 28 (28)
T PF01462_consen 1 ACPRPCTCSGLTVDCSGRGLTAVPSDLP 28 (28)
T ss_dssp SSETTSEEETTEEEETTSS-SSS-STS-
T ss_pred CcCCCCEecCCEeECCCCCCCccCCCCc
Confidence 3789999999999999999999997653
No 79
>smart00013 LRRNT Leucine rich repeat N-terminal domain.
Probab=92.66 E-value=0.16 Score=29.38 Aligned_cols=30 Identities=50% Similarity=1.167 Sum_probs=26.8
Q ss_pred CCCCccccCceeecCCCCCCcCCCCCCCCc
Q psy12210 295 CPHPCRCADGIVDCREKGLNKVPILLPEAT 324 (405)
Q Consensus 295 ~~~~~~~~l~~l~l~~n~l~~~p~~~~~~l 324 (405)
||.+|.|.-..+++++.+|+.+|..++...
T Consensus 2 CP~~C~C~~~~V~C~~~~L~~vP~~iP~~t 31 (33)
T smart00013 2 CPAPCNCSGTAVDCSGRGLTEVPLDLPPDT 31 (33)
T ss_pred cCCCCEECCCEeEeCCCCcCccCCCCCccc
Confidence 899999999999999999999998887543
No 80
>smart00082 LRRCT Leucine rich repeat C-terminal domain.
Probab=91.85 E-value=0.091 Score=33.85 Aligned_cols=47 Identities=40% Similarity=0.915 Sum_probs=31.4
Q ss_pred CccccccCchHHHHHHhhcCC--CCCccccCCCCCCCCCcccccCCCccc
Q psy12210 206 NSFICDCHLSWLHRWLKRYPR--LGLYTKCFAPSHIKGQNILDIPEHEFK 253 (405)
Q Consensus 206 N~l~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~l~~~~~~ 253 (405)
|++.|+|.+.|+..|+..... ......|..+..+. ..+.++....+.
T Consensus 1 NP~~CdC~l~~~~~w~~~~~~~~~~~~~~C~~P~~~~-~~l~~~~~~~~~ 49 (51)
T smart00082 1 NPFICDCELRWLLRWLQANEHLQDPVSLRCASPSSLR-GPLLELLHSEFK 49 (51)
T ss_pred CCccCcCCchHHHHHHHhCCccCCCCCCEeCCcHHHH-hHHHcCCHhhCC
Confidence 789999999999999877322 12346677777666 445555544443
No 81
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=87.33 E-value=0.44 Score=25.87 Aligned_cols=19 Identities=26% Similarity=0.450 Sum_probs=15.1
Q ss_pred CccCceeecccCCCcccCh
Q psy12210 375 YKRLRRIRLEQNDITELPP 393 (405)
Q Consensus 375 l~~L~~L~L~~N~l~~i~~ 393 (405)
+.+|+.|+|++|+|+.|..
T Consensus 1 L~~L~~L~L~~NkI~~IEn 19 (26)
T smart00365 1 LTNLEELDLSQNKIKKIEN 19 (26)
T ss_pred CCccCEEECCCCccceecC
Confidence 3678999999999887753
No 82
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=84.59 E-value=0.6 Score=25.26 Aligned_cols=18 Identities=28% Similarity=0.619 Sum_probs=15.9
Q ss_pred ccCceeecccCCCcccCh
Q psy12210 376 KRLRRIRLEQNDITELPP 393 (405)
Q Consensus 376 ~~L~~L~L~~N~l~~i~~ 393 (405)
++|+.|++++|+|+++|.
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 578999999999999985
No 83
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=84.07 E-value=0.14 Score=27.15 Aligned_cols=19 Identities=26% Similarity=0.347 Sum_probs=10.7
Q ss_pred CccCceeecccCCCcccCh
Q psy12210 375 YKRLRRIRLEQNDITELPP 393 (405)
Q Consensus 375 l~~L~~L~L~~N~l~~i~~ 393 (405)
+++|+.|+|++|+|++...
T Consensus 1 ~~~L~~L~l~~n~i~~~g~ 19 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGA 19 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHH
T ss_pred CCCCCEEEccCCcCCHHHH
Confidence 3567777777777665443
No 84
>KOG3864|consensus
Probab=83.32 E-value=0.31 Score=41.25 Aligned_cols=93 Identities=14% Similarity=0.137 Sum_probs=68.3
Q ss_pred CCCCccccCCCCC--CCccEEEccCCCCCCCCcccccCCCCCcEEecCCCc------ceeecccccCCCCCCCEEEccCC
Q psy12210 111 REKGLNKVPILLP--EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQ------ISKVAVDAFQGLKSLTSLTLNNN 182 (405)
Q Consensus 111 ~~n~l~~lp~~~~--~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~------l~~~~~~~~~~l~~L~~L~l~~n 182 (405)
++|+.-+.|.... ..++.++-++..|..+.-..+..++.++.|.+.++. +..+.+ ..++|+.|++++|
T Consensus 86 d~~g~~~lp~~~~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~----~~~~L~~L~lsgC 161 (221)
T KOG3864|consen 86 DYNGYFSLPGPNADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGG----LAPSLQDLDLSGC 161 (221)
T ss_pred cccceecCCCCCCCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcc----cccchheeeccCC
Confidence 4454445554322 357788999999998887778888888888887763 222221 3478999999988
Q ss_pred c-CcccChhhhhcccCCcEEEeecCc
Q psy12210 183 N-LTYLPDGVFAELFRLRTLRISENS 207 (405)
Q Consensus 183 ~-l~~l~~~~f~~l~~L~~L~l~~N~ 207 (405)
. |++-.-..+..+++|+.|.+.+-+
T Consensus 162 ~rIT~~GL~~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 162 PRITDGGLACLLKLKNLRRLHLYDLP 187 (221)
T ss_pred CeechhHHHHHHHhhhhHHHHhcCch
Confidence 6 888887788889999999887754
No 85
>KOG0473|consensus
Probab=79.28 E-value=0.028 Score=48.41 Aligned_cols=93 Identities=24% Similarity=0.312 Sum_probs=75.4
Q ss_pred CccccCC-CC--CCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcccChh
Q psy12210 114 GLNKVPI-LL--PEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDG 190 (405)
Q Consensus 114 ~l~~lp~-~~--~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~ 190 (405)
.+.++|. ++ +...+.||++.|++..+... |..++.+..|+++.|++...+ ..+..+..+..++...|..+..|-+
T Consensus 29 ~~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n-~s~~t~~~rl~~sknq~~~~~-~d~~q~~e~~~~~~~~n~~~~~p~s 106 (326)
T KOG0473|consen 29 ELSEIPVREIASFKRVTVLDLSSNRLVNLGKN-FSILTRLVRLDLSKNQIKFLP-KDAKQQRETVNAASHKNNHSQQPKS 106 (326)
T ss_pred HhcccchhhhhccceeeeehhhhhHHHhhccc-hHHHHHHHHHhccHhhHhhCh-hhHHHHHHHHHHHhhccchhhCCcc
Confidence 3456663 22 46788999999999888764 788889999999999998876 5577777788888889999998864
Q ss_pred hhhcccCCcEEEeecCccc
Q psy12210 191 VFAELFRLRTLRISENSFI 209 (405)
Q Consensus 191 ~f~~l~~L~~L~l~~N~l~ 209 (405)
|+..+.++.++.-+|++.
T Consensus 107 -~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 107 -QKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred -ccccCCcchhhhccCcch
Confidence 788999999999999865
No 86
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=77.13 E-value=2.8 Score=23.08 Aligned_cols=14 Identities=36% Similarity=0.373 Sum_probs=12.2
Q ss_pred cccceEEccCCccc
Q psy12210 22 FRLRTLRISENSFI 35 (405)
Q Consensus 22 ~~L~~L~l~~n~~~ 35 (405)
++|++|||++|.|.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 57999999999994
No 87
>KOG3864|consensus
Probab=74.63 E-value=0.74 Score=39.03 Aligned_cols=28 Identities=25% Similarity=0.268 Sum_probs=13.6
Q ss_pred ccCceeecccCC-CcccChhhcCCCcccc
Q psy12210 376 KRLRRIRLEQND-ITELPPKAFANYKRLR 403 (405)
Q Consensus 376 ~~L~~L~L~~N~-l~~i~~~~f~~l~~L~ 403 (405)
++|+.|+|++|. |++-.-..+..+++|+
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLACLLKLKNLR 179 (221)
T ss_pred cchheeeccCCCeechhHHHHHHHhhhhH
Confidence 555666666554 5444433344444443
No 88
>KOG0473|consensus
Probab=70.50 E-value=0.2 Score=43.39 Aligned_cols=38 Identities=8% Similarity=0.094 Sum_probs=18.6
Q ss_pred ccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCC
Q psy12210 349 FKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQND 387 (405)
Q Consensus 349 ~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~ 387 (405)
++.... +.+++..|..+..|.+ +...++++.+++.+|.
T Consensus 84 ~~q~~e~~~~~~~~n~~~~~p~s-~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 84 AKQQRETVNAASHKNNHSQQPKS-QKKEPHPKKNEQKKTE 122 (326)
T ss_pred HHHHHHHHHHHhhccchhhCCcc-ccccCCcchhhhccCc
Confidence 333444 4455555555555432 4555555555555554
No 89
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=51.87 E-value=11 Score=20.03 Aligned_cols=22 Identities=32% Similarity=0.191 Sum_probs=15.3
Q ss_pred ccccceEEccCCcccccchhhH
Q psy12210 21 LFRLRTLRISENSFICDCHLSW 42 (405)
Q Consensus 21 l~~L~~L~l~~n~~~~~~~~~~ 42 (405)
+++|+.|++++|.-.++.++..
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~ 22 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQA 22 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHH
Confidence 4689999999997544444433
No 90
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=41.30 E-value=45 Score=20.44 Aligned_cols=32 Identities=16% Similarity=0.360 Sum_probs=16.1
Q ss_pred CCCCccEEEccCCCCCCCCcccccCCCCCcEEec
Q psy12210 122 LPEATTELRLEQNDITELPPKAFANYKRLRRIDL 155 (405)
Q Consensus 122 ~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~l 155 (405)
+|.+++.|.+.++-=..+.++.+.. +|+.|.+
T Consensus 10 iP~~l~~L~~g~~fn~~i~~~~lP~--sl~~L~f 41 (44)
T PF05725_consen 10 IPSSLKSLIFGSSFNQPIEPGSLPN--SLKSLSF 41 (44)
T ss_pred eCCCCeEEEECCccCccCCCCccCC--CceEEEe
Confidence 4567777777544433444433332 4555544
No 91
>KOG3763|consensus
Probab=38.77 E-value=16 Score=36.06 Aligned_cols=62 Identities=19% Similarity=0.308 Sum_probs=28.4
Q ss_pred CCCCCcEEecCCCcceeecc--cccCCCCCCCEEEccCC--cCcccChhhhhc--ccCCcEEEeecCccc
Q psy12210 146 NYKRLRRIDLSKNQISKVAV--DAFQGLKSLTSLTLNNN--NLTYLPDGVFAE--LFRLRTLRISENSFI 209 (405)
Q Consensus 146 ~l~~L~~L~ls~n~l~~~~~--~~~~~l~~L~~L~l~~n--~l~~l~~~~f~~--l~~L~~L~l~~N~l~ 209 (405)
+.+.+..+.+++|++..+.. .--...++|..|+|++| .+....+ ..+ ...|+.|.+.||++.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~e--l~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESE--LDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhh--hhhhcCCCHHHeeecCCccc
Confidence 34455555566665554421 00112345666666666 3332221 122 234566666666653
No 92
>KOG1947|consensus
Probab=33.12 E-value=34 Score=33.40 Aligned_cols=85 Identities=25% Similarity=0.228 Sum_probs=45.7
Q ss_pred CCccEEEccCC--CCCCCC---cccccCCCCCcEEecCCCc-ceeecccccCC-CCCCCEEEccCCc-CcccChh-hhhc
Q psy12210 124 EATTELRLEQN--DITELP---PKAFANYKRLRRIDLSKNQ-ISKVAVDAFQG-LKSLTSLTLNNNN-LTYLPDG-VFAE 194 (405)
Q Consensus 124 ~~L~~L~L~~n--~i~~l~---~~~~~~l~~L~~L~ls~n~-l~~~~~~~~~~-l~~L~~L~l~~n~-l~~l~~~-~f~~ 194 (405)
..++.|+++++ .+...+ ......+++|+.|+++++. ++...-..+.. +++|+.|.+.++. ++...-. ....
T Consensus 214 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~ 293 (482)
T KOG1947|consen 214 PNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAER 293 (482)
T ss_pred chhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHh
Confidence 46677777652 111111 1122345677777777766 44433222222 6677777766665 4433322 2345
Q ss_pred ccCCcEEEeecCcc
Q psy12210 195 LFRLRTLRISENSF 208 (405)
Q Consensus 195 l~~L~~L~l~~N~l 208 (405)
++.|+.|+++++..
T Consensus 294 ~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 294 CPSLRELDLSGCHG 307 (482)
T ss_pred cCcccEEeeecCcc
Confidence 66788888876553
No 93
>KOG3763|consensus
Probab=30.71 E-value=26 Score=34.64 Aligned_cols=61 Identities=28% Similarity=0.351 Sum_probs=40.0
Q ss_pred CCccEEEccCCCCCCCCcc-cc-cCCCCCcEEecCCC--cceeecc-cccCCCCCCCEEEccCCcCc
Q psy12210 124 EATTELRLEQNDITELPPK-AF-ANYKRLRRIDLSKN--QISKVAV-DAFQGLKSLTSLTLNNNNLT 185 (405)
Q Consensus 124 ~~L~~L~L~~n~i~~l~~~-~~-~~l~~L~~L~ls~n--~l~~~~~-~~~~~l~~L~~L~l~~n~l~ 185 (405)
+.+..+.+++|++..+..- ++ ...++|+.|+|++| .+..... .-++ ...|++|.+.+|.+.
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k-~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLK-GLPLEELVLEGNPLC 283 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhc-CCCHHHeeecCCccc
Confidence 4677888999998887752 11 34578999999999 3332211 1122 234788899999875
No 94
>PF01463 LRRCT: Leucine rich repeat C-terminal domain; InterPro: IPR000483 Leucine-rich repeats (LRR, see IPR001611 from INTERPRO) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions []. Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response. LRRs are often flanked by cysteine-rich domains: an N-terminal LRR domain (IPR000372 from INTERPRO) and a C-terminal LRR domain. This entry represents the C-terminal LRR domain. ; PDB: 3RFE_B 3REZ_D 2WFH_A 2V70_B 2V9S_C 2V9T_B 1W8A_A.
Probab=23.13 E-value=27 Score=18.48 Aligned_cols=22 Identities=41% Similarity=1.183 Sum_probs=15.1
Q ss_pred ccCCCCCCCCCcccccCCCcccc
Q psy12210 232 KCFAPSHIKGQNILDIPEHEFKC 254 (405)
Q Consensus 232 ~~~~~~~l~~~~l~~l~~~~~~~ 254 (405)
.|..|..|.+ .+..+....|.|
T Consensus 3 ~Ca~P~~lrg-~l~~~~~~~f~C 24 (25)
T PF01463_consen 3 RCASPPELRG-PLLDLPPSDFKC 24 (25)
T ss_dssp BEEESGGGTT-BGGGSSGGG---
T ss_pred ccCCChHHcC-cHhhCCcccCcC
Confidence 4667788888 888888877755
Done!