Query psy12210
Match_columns 405
No_of_seqs 178 out of 1812
Neff 9.9
Searched_HMMs 29240
Date Fri Aug 16 21:40:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12210.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12210hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2id5_A Lingo-1, leucine rich r 100.0 1.9E-29 6.6E-34 247.1 20.6 234 106-405 83-325 (477)
2 3zyj_A Leucine-rich repeat-con 100.0 1.8E-28 6.2E-33 237.6 21.3 247 94-405 32-284 (440)
3 3zyi_A Leucine-rich repeat-con 100.0 2.4E-28 8.1E-33 237.6 21.0 247 94-405 43-295 (452)
4 1ozn_A Reticulon 4 receptor; N 100.0 4.6E-28 1.6E-32 221.1 20.7 114 96-209 1-118 (285)
5 3v47_A TOLL-like receptor 5B a 100.0 5.6E-28 1.9E-32 235.1 20.5 344 2-405 34-400 (455)
6 2id5_A Lingo-1, leucine rich r 100.0 2.9E-28 9.8E-33 238.7 17.7 283 95-405 1-301 (477)
7 3t6q_A CD180 antigen; protein- 100.0 3.7E-27 1.3E-31 237.6 24.0 155 2-168 37-199 (606)
8 3t6q_A CD180 antigen; protein- 100.0 1.8E-27 6.1E-32 240.0 20.7 365 2-404 133-551 (606)
9 1xku_A Decorin; proteoglycan, 100.0 2.4E-27 8.2E-32 220.9 19.0 257 95-399 23-286 (330)
10 2ft3_A Biglycan; proteoglycan, 100.0 2.1E-26 7.1E-31 214.8 24.7 274 95-405 25-325 (332)
11 3rgz_A Protein brassinosteroid 99.9 1.6E-27 5.6E-32 246.3 16.1 347 2-393 298-721 (768)
12 2z66_A Variable lymphocyte rec 99.9 4.1E-27 1.4E-31 217.0 16.9 242 97-403 1-251 (306)
13 2z81_A CD282 antigen, TOLL-lik 99.9 5.7E-27 2E-31 233.4 19.1 349 2-405 30-502 (549)
14 1xku_A Decorin; proteoglycan, 99.9 2.5E-26 8.5E-31 214.1 22.2 274 2-404 35-323 (330)
15 1ziw_A TOLL-like receptor 3; i 99.9 3E-26 1E-30 234.1 23.7 162 2-196 29-195 (680)
16 1ziw_A TOLL-like receptor 3; i 99.9 2.4E-26 8.3E-31 234.8 22.8 351 2-403 226-612 (680)
17 3v47_A TOLL-like receptor 5B a 99.9 1.6E-26 5.4E-31 224.9 20.1 291 96-405 3-376 (455)
18 3vq2_A TLR4, TOLL-like recepto 99.9 9.7E-27 3.3E-31 234.6 19.1 174 2-209 36-217 (606)
19 4g8a_A TOLL-like receptor 4; l 99.9 1.3E-26 4.4E-31 234.5 18.9 355 2-405 56-572 (635)
20 4ay9_X Follicle-stimulating ho 99.9 1.4E-26 4.7E-31 217.6 17.0 241 96-404 1-250 (350)
21 2xwt_C Thyrotropin receptor; s 99.9 7.2E-27 2.5E-31 207.5 14.2 214 95-403 2-232 (239)
22 3vq2_A TLR4, TOLL-like recepto 99.9 3E-26 1E-30 231.0 18.0 362 1-404 59-549 (606)
23 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 9.6E-26 3.3E-30 225.3 21.3 153 2-193 35-192 (562)
24 3o6n_A APL1; leucine-rich repe 99.9 2.7E-26 9.2E-31 218.9 16.5 268 2-404 49-322 (390)
25 4eco_A Uncharacterized protein 99.9 1E-26 3.6E-31 235.2 13.2 371 2-396 85-586 (636)
26 2ft3_A Biglycan; proteoglycan, 99.9 1.7E-25 5.7E-30 208.7 20.2 281 2-387 37-331 (332)
27 3rgz_A Protein brassinosteroid 99.9 3.3E-26 1.1E-30 236.5 16.2 194 2-209 155-356 (768)
28 3j0a_A TOLL-like receptor 5; m 99.9 5E-25 1.7E-29 230.0 24.9 273 106-405 76-367 (844)
29 4ecn_A Leucine-rich repeat pro 99.9 2.3E-26 7.8E-31 237.6 14.0 374 2-400 327-830 (876)
30 4eco_A Uncharacterized protein 99.9 1.7E-25 5.7E-30 226.4 19.1 324 2-393 253-604 (636)
31 2o6q_A Variable lymphocyte rec 99.9 4.7E-25 1.6E-29 199.5 20.2 204 98-390 9-219 (270)
32 2z63_A TOLL-like receptor 4, v 99.9 2.6E-25 8.8E-30 222.4 19.0 172 2-207 32-211 (570)
33 3oja_B Anopheles plasmodium-re 99.9 1.9E-25 6.4E-30 224.6 16.6 268 2-404 55-328 (597)
34 3j0a_A TOLL-like receptor 5; m 99.9 9.6E-25 3.3E-29 227.8 21.6 254 104-404 267-530 (844)
35 2z63_A TOLL-like receptor 4, v 99.9 7.8E-25 2.7E-29 219.0 20.1 354 2-405 56-523 (570)
36 2z80_A TOLL-like receptor 2, v 99.9 1.8E-25 6.2E-30 210.2 14.3 115 95-209 22-137 (353)
37 4ecn_A Leucine-rich repeat pro 99.9 5.5E-25 1.9E-29 227.3 18.9 333 2-396 452-847 (876)
38 2z7x_B TOLL-like receptor 1, v 99.9 3.8E-25 1.3E-29 218.9 15.8 331 2-405 25-473 (520)
39 2z62_A TOLL-like receptor 4, v 99.9 9.7E-25 3.3E-29 198.1 17.0 226 100-390 2-238 (276)
40 3zyj_A Leucine-rich repeat-con 99.9 1.5E-24 5.2E-29 210.0 19.1 237 2-389 47-292 (440)
41 3o6n_A APL1; leucine-rich repe 99.9 1.3E-24 4.4E-29 207.2 17.9 143 2-209 73-218 (390)
42 4fmz_A Internalin; leucine ric 99.9 5.2E-24 1.8E-28 199.7 20.9 286 2-404 48-337 (347)
43 3zyi_A Leucine-rich repeat-con 99.9 1.8E-24 6.2E-29 210.2 18.3 236 3-389 59-303 (452)
44 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 9.5E-25 3.3E-29 218.0 16.5 64 1-76 55-118 (562)
45 2z7x_B TOLL-like receptor 1, v 99.9 2.5E-24 8.7E-29 212.9 16.0 153 2-193 4-161 (520)
46 3oja_B Anopheles plasmodium-re 99.9 5.2E-24 1.8E-28 214.1 17.6 143 2-209 79-224 (597)
47 3m19_A Variable lymphocyte rec 99.9 6.2E-24 2.1E-28 190.0 15.7 115 95-209 2-120 (251)
48 4g8a_A TOLL-like receptor 4; l 99.9 2.5E-23 8.5E-28 210.4 22.0 113 97-209 23-137 (635)
49 2z80_A TOLL-like receptor 2, v 99.9 3.1E-24 1.1E-28 201.8 14.2 270 3-393 36-318 (353)
50 4fmz_A Internalin; leucine ric 99.9 1.3E-23 4.5E-28 197.0 18.0 273 2-390 70-347 (347)
51 3g06_A SSPH2 (leucine-rich rep 99.9 1.9E-23 6.5E-28 209.0 19.7 262 2-399 44-307 (622)
52 1ozn_A Reticulon 4 receptor; N 99.9 2.5E-23 8.5E-28 189.6 18.8 178 124-390 56-239 (285)
53 3bz5_A Internalin-J, INLJ; leu 99.9 8.7E-23 3E-27 198.1 23.1 305 2-392 46-355 (457)
54 1ogq_A PGIP-2, polygalacturona 99.9 5.5E-24 1.9E-28 196.6 13.1 196 106-392 104-308 (313)
55 2z81_A CD282 antigen, TOLL-lik 99.9 3.6E-23 1.2E-27 206.0 18.4 197 149-391 311-512 (549)
56 1o6v_A Internalin A; bacterial 99.9 4.9E-23 1.7E-27 200.9 18.7 182 2-208 50-233 (466)
57 2z66_A Variable lymphocyte rec 99.9 2.4E-23 8.3E-28 191.7 14.4 241 2-391 11-263 (306)
58 2v9t_B SLIT homolog 2 protein 99.9 3.9E-23 1.3E-27 180.9 14.4 195 2-256 15-212 (220)
59 3o53_A Protein LRIM1, AGAP0063 99.9 7.7E-24 2.6E-28 196.0 10.3 200 106-403 61-265 (317)
60 1jl5_A Outer protein YOPM; leu 99.9 4.5E-22 1.5E-26 193.0 23.0 303 2-399 75-382 (454)
61 1o6v_A Internalin A; bacterial 99.9 2.9E-22 9.8E-27 195.5 19.9 90 302-405 288-380 (466)
62 2v9t_B SLIT homolog 2 protein 99.9 1.6E-22 5.5E-27 177.0 16.0 115 95-209 3-117 (220)
63 1p9a_G Platelet glycoprotein I 99.9 3.8E-22 1.3E-26 182.1 18.9 193 105-390 12-209 (290)
64 1jl5_A Outer protein YOPM; leu 99.9 6.9E-22 2.4E-26 191.6 21.6 78 302-392 318-412 (454)
65 2xot_A Amphoterin-induced prot 99.9 9.9E-23 3.4E-27 192.0 13.7 117 93-209 8-125 (361)
66 2o6s_A Variable lymphocyte rec 99.9 1.7E-22 5.7E-27 175.4 13.8 113 97-209 1-113 (208)
67 2wfh_A SLIT homolog 2 protein 99.9 3.9E-22 1.3E-26 170.7 14.4 161 95-255 2-185 (193)
68 2v70_A SLIT-2, SLIT homolog 2 99.9 5.9E-22 2E-26 173.4 15.7 115 95-209 3-118 (220)
69 3oja_A Leucine-rich immune mol 99.9 1E-22 3.5E-27 199.3 11.4 90 303-402 171-264 (487)
70 2v70_A SLIT-2, SLIT homolog 2 99.9 1.7E-21 5.7E-26 170.5 17.4 195 2-255 15-212 (220)
71 2o6q_A Variable lymphocyte rec 99.9 1.9E-21 6.6E-26 175.7 17.7 189 125-405 17-210 (270)
72 2z62_A TOLL-like receptor 4, v 99.9 2.3E-21 7.8E-26 175.8 17.2 174 106-368 55-240 (276)
73 1w8a_A SLIT protein; signaling 99.9 2.3E-21 7.9E-26 165.9 16.0 162 96-257 1-187 (192)
74 3bz5_A Internalin-J, INLJ; leu 99.9 1.4E-20 4.6E-25 182.7 22.7 200 106-387 67-275 (457)
75 4ay9_X Follicle-stimulating ho 99.9 7.2E-22 2.5E-26 185.3 13.2 73 302-386 178-256 (350)
76 1ogq_A PGIP-2, polygalacturona 99.9 1.2E-21 4E-26 181.0 13.0 233 2-404 54-295 (313)
77 3g39_A Variable lymphocyte rec 99.9 2.2E-21 7.5E-26 162.6 13.5 132 95-226 1-133 (170)
78 1p9a_G Platelet glycoprotein I 99.9 5.2E-21 1.8E-25 174.5 16.1 187 2-225 35-224 (290)
79 3o53_A Protein LRIM1, AGAP0063 99.9 9.3E-22 3.2E-26 182.0 10.3 179 124-405 58-242 (317)
80 3g06_A SSPH2 (leucine-rich rep 99.9 2.8E-20 9.7E-25 186.1 21.7 86 302-405 202-289 (622)
81 4fcg_A Uncharacterized protein 99.9 2.8E-21 9.4E-26 179.6 12.9 207 106-404 84-305 (328)
82 3m19_A Variable lymphocyte rec 99.9 2.1E-20 7.3E-25 166.9 18.0 188 2-225 18-209 (251)
83 1wwl_A Monocyte differentiatio 99.9 9.9E-22 3.4E-26 181.4 9.2 194 106-391 98-311 (312)
84 4fcg_A Uncharacterized protein 99.8 1.6E-20 5.3E-25 174.5 17.1 197 106-394 107-319 (328)
85 2xwt_C Thyrotropin receptor; s 99.8 1.1E-20 3.9E-25 167.4 14.5 188 106-387 34-237 (239)
86 2r9u_A Variable lymphocyte rec 99.8 1.5E-20 5.1E-25 158.0 14.2 133 94-226 3-136 (174)
87 1wwl_A Monocyte differentiatio 99.8 6.1E-21 2.1E-25 176.1 12.6 245 2-367 47-311 (312)
88 3rfs_A Internalin B, repeat mo 99.8 2.4E-20 8.1E-25 168.7 14.5 179 124-400 63-246 (272)
89 3e6j_A Variable lymphocyte rec 99.8 2.2E-19 7.6E-24 158.0 16.4 113 96-208 12-124 (229)
90 1h6u_A Internalin H; cell adhe 99.8 3.6E-19 1.2E-23 163.9 15.0 169 124-393 63-234 (308)
91 3cvr_A Invasion plasmid antige 99.8 3.1E-19 1.1E-23 176.5 14.7 191 105-399 61-253 (571)
92 3rfs_A Internalin B, repeat mo 99.8 1.2E-18 4.2E-23 157.4 17.5 176 124-392 41-221 (272)
93 3oja_A Leucine-rich immune mol 99.8 1.1E-19 3.8E-24 177.8 11.3 202 125-405 35-242 (487)
94 4glp_A Monocyte differentiatio 99.8 3E-19 1E-23 164.6 10.9 85 124-208 145-236 (310)
95 2xot_A Amphoterin-induced prot 99.8 1.1E-18 3.7E-23 164.4 12.4 202 2-239 22-237 (361)
96 3cvr_A Invasion plasmid antige 99.8 2.6E-18 8.7E-23 170.0 14.2 163 106-376 83-254 (571)
97 3e6j_A Variable lymphocyte rec 99.8 4.3E-18 1.5E-22 149.7 14.0 163 2-225 23-189 (229)
98 1h6u_A Internalin H; cell adhe 99.8 6.1E-18 2.1E-22 155.6 15.2 179 124-405 41-222 (308)
99 2o6r_A Variable lymphocyte rec 99.8 9E-18 3.1E-22 141.5 14.4 113 97-209 1-113 (177)
100 3goz_A Leucine-rich repeat-con 99.8 4.8E-19 1.6E-23 166.9 7.0 261 1-393 1-301 (362)
101 2o6s_A Variable lymphocyte rec 99.7 3.3E-17 1.1E-21 141.8 16.7 164 2-225 11-178 (208)
102 4glp_A Monocyte differentiatio 99.7 1.1E-18 3.6E-23 160.9 7.6 204 124-390 91-308 (310)
103 2ifg_A High affinity nerve gro 99.7 1.1E-17 3.7E-22 156.6 14.6 142 97-240 1-149 (347)
104 3sb4_A Hypothetical leucine ri 99.7 6.9E-18 2.4E-22 156.8 9.9 256 106-405 52-326 (329)
105 1z7x_W Ribonuclease inhibitor; 99.7 7.3E-19 2.5E-23 171.0 3.2 87 302-392 314-414 (461)
106 1z7x_W Ribonuclease inhibitor; 99.7 1.2E-19 4E-24 176.6 -2.9 320 2-396 7-361 (461)
107 3goz_A Leucine-rich repeat-con 99.7 2.4E-18 8.1E-23 162.1 6.2 240 2-370 26-302 (362)
108 1h6t_A Internalin B; cell adhe 99.7 5.6E-17 1.9E-21 147.9 12.2 171 124-395 46-219 (291)
109 2o6r_A Variable lymphocyte rec 99.7 3.5E-16 1.2E-20 131.7 13.4 102 124-225 52-154 (177)
110 1m9s_A Internalin B; cell inva 99.7 1.9E-16 6.5E-21 158.2 13.7 80 124-209 65-144 (605)
111 1xeu_A Internalin C; cellular 99.7 1.7E-17 5.6E-22 149.1 4.6 168 125-394 20-190 (263)
112 4fdw_A Leucine rich hypothetic 99.7 2.6E-15 9.1E-20 142.7 19.6 97 106-206 183-281 (401)
113 2ca6_A RAN GTPase-activating p 99.7 5.3E-18 1.8E-22 161.1 0.2 190 124-393 94-320 (386)
114 3g39_A Variable lymphocyte rec 99.7 1.6E-16 5.3E-21 132.9 9.0 105 293-405 1-107 (170)
115 1h6t_A Internalin B; cell adhe 99.7 4.9E-16 1.7E-20 141.7 12.8 96 106-207 71-167 (291)
116 2r9u_A Variable lymphocyte rec 99.6 7.1E-16 2.4E-20 129.4 9.5 106 292-405 3-110 (174)
117 2ast_B S-phase kinase-associat 99.6 1.4E-16 4.7E-21 148.3 4.4 204 106-398 96-315 (336)
118 1xeu_A Internalin C; cellular 99.6 4.9E-15 1.7E-19 132.9 12.2 164 2-210 23-186 (263)
119 4fdw_A Leucine rich hypothetic 99.6 2.5E-14 8.5E-19 136.0 17.7 223 104-400 136-369 (401)
120 1m9s_A Internalin B; cell inva 99.6 8.2E-16 2.8E-20 153.6 5.9 196 106-402 24-223 (605)
121 3sb4_A Hypothetical leucine ri 99.6 1.1E-14 3.6E-19 135.2 12.8 217 124-383 101-328 (329)
122 4ezg_A Putative uncharacterize 99.6 8.3E-15 2.9E-19 125.5 9.6 149 124-390 44-195 (197)
123 2wfh_A SLIT homolog 2 protein 99.5 1E-14 3.5E-19 124.4 8.8 102 294-404 3-106 (193)
124 2ast_B S-phase kinase-associat 99.5 8.4E-16 2.9E-20 143.0 2.0 216 106-386 50-282 (336)
125 2ca6_A RAN GTPase-activating p 99.5 1.6E-15 5.5E-20 144.0 3.8 99 302-404 188-307 (386)
126 4ezg_A Putative uncharacterize 99.5 5.2E-14 1.8E-18 120.5 11.0 100 106-209 91-194 (197)
127 1w8a_A SLIT protein; signaling 99.5 2.1E-14 7.2E-19 122.4 8.5 103 294-404 1-106 (192)
128 2ell_A Acidic leucine-rich nuc 99.5 6.5E-14 2.2E-18 116.6 10.5 87 118-207 18-106 (168)
129 2ell_A Acidic leucine-rich nuc 99.5 1.2E-13 4.1E-18 115.0 9.0 86 124-209 71-160 (168)
130 1dce_A Protein (RAB geranylger 99.5 6.6E-15 2.3E-19 146.1 0.6 100 106-209 444-546 (567)
131 3rfe_A Platelet glycoprotein I 99.5 1.8E-13 6.3E-18 108.3 8.7 112 96-255 1-116 (130)
132 4b8c_D Glucose-repressible alc 99.4 2.7E-14 9.4E-19 146.0 3.4 101 106-209 227-329 (727)
133 4fs7_A Uncharacterized protein 99.4 2.8E-12 9.7E-17 121.9 16.8 72 134-207 148-219 (394)
134 2je0_A Acidic leucine-rich nuc 99.4 2.4E-13 8.1E-18 110.8 8.0 98 106-204 45-148 (149)
135 4b8c_D Glucose-repressible alc 99.4 8.4E-14 2.9E-18 142.4 4.1 98 106-208 176-282 (727)
136 1a9n_A U2A', U2A'; complex (nu 99.4 3.3E-13 1.1E-17 113.3 6.7 103 106-209 45-153 (176)
137 3ogk_B Coronatine-insensitive 99.4 8.8E-14 3E-18 139.4 2.1 87 302-395 437-532 (592)
138 1a9n_A U2A', U2A'; complex (nu 99.4 1.3E-12 4.3E-17 109.7 8.6 81 124-208 19-100 (176)
139 2je0_A Acidic leucine-rich nuc 99.4 1.9E-12 6.4E-17 105.4 9.0 81 124-207 17-99 (149)
140 1dce_A Protein (RAB geranylger 99.4 3.1E-13 1.1E-17 134.1 4.9 175 2-203 353-567 (567)
141 2ifg_A High affinity nerve gro 99.3 3.5E-12 1.2E-16 119.0 8.6 100 295-404 1-107 (347)
142 4gt6_A Cell surface protein; l 99.2 2E-10 6.7E-15 109.1 17.5 92 302-404 266-361 (394)
143 2p1m_B Transport inhibitor res 99.2 1.1E-12 3.9E-17 131.3 0.1 80 302-390 433-520 (594)
144 4fs7_A Uncharacterized protein 99.2 1.8E-10 6E-15 109.4 14.2 91 302-404 298-392 (394)
145 3ogk_B Coronatine-insensitive 99.2 1.6E-12 5.4E-17 130.2 -0.5 81 124-205 164-252 (592)
146 1ds9_A Outer arm dynein; leuci 99.2 3.7E-13 1.3E-17 115.2 -4.6 95 106-202 73-180 (198)
147 1ds9_A Outer arm dynein; leuci 99.2 4.6E-13 1.6E-17 114.6 -5.4 61 322-392 115-188 (198)
148 4h09_A Hypothetical leucine ri 99.1 2.1E-09 7.3E-14 101.3 18.4 68 135-206 101-168 (379)
149 2p1m_B Transport inhibitor res 99.1 1.1E-11 3.7E-16 124.2 1.2 79 302-387 457-542 (594)
150 4gt6_A Cell surface protein; l 99.1 2.2E-09 7.6E-14 101.8 17.2 234 124-404 137-382 (394)
151 4h09_A Hypothetical leucine ri 98.9 1.1E-07 3.8E-12 89.5 20.8 91 302-403 264-359 (379)
152 3un9_A NLR family member X1; l 98.9 2.1E-10 7E-15 107.8 1.5 104 106-209 129-252 (372)
153 3un9_A NLR family member X1; l 98.9 1E-10 3.4E-15 110.0 -2.6 87 123-209 71-168 (372)
154 3rfe_A Platelet glycoprotein I 98.3 5.2E-07 1.8E-11 70.9 5.3 64 294-365 1-68 (130)
155 1io0_A Tropomodulin; LRR prote 98.1 2.3E-06 7.9E-11 71.8 4.7 86 124-209 65-164 (185)
156 2ra8_A Uncharacterized protein 97.9 2.6E-05 9E-10 72.5 8.5 79 124-205 139-228 (362)
157 3rw6_A Nuclear RNA export fact 97.8 1.3E-05 4.4E-10 70.9 4.6 60 125-185 171-233 (267)
158 3e4g_A ATP synthase subunit S, 97.8 1.6E-05 5.5E-10 65.4 4.1 84 124-207 61-150 (176)
159 1io0_A Tropomodulin; LRR prote 97.6 1.9E-05 6.6E-10 66.1 2.3 82 106-187 68-166 (185)
160 3rw6_A Nuclear RNA export fact 97.4 0.00015 5.3E-09 64.0 5.0 79 129-209 148-233 (267)
161 2ra8_A Uncharacterized protein 96.8 0.0017 5.7E-08 60.3 6.0 85 124-209 193-292 (362)
162 3e4g_A ATP synthase subunit S, 96.5 0.00063 2.1E-08 55.8 1.3 82 302-391 62-155 (176)
163 1pgv_A TMD-1, tropomodulin TMD 95.8 0.02 6.7E-07 47.8 6.9 86 124-209 70-170 (197)
164 2lz0_A Uncharacterized protein 93.2 0.2 6.8E-06 36.6 6.0 51 133-184 5-55 (100)
165 1pgv_A TMD-1, tropomodulin TMD 92.3 0.067 2.3E-06 44.6 2.6 83 124-206 41-136 (197)
166 2lz0_A Uncharacterized protein 90.6 0.21 7.1E-06 36.5 3.5 41 346-387 13-54 (100)
No 1
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=1.9e-29 Score=247.05 Aligned_cols=234 Identities=20% Similarity=0.233 Sum_probs=165.2
Q ss_pred ceEEcCCCCccccCCCC---CCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCC
Q psy12210 106 GIVDCREKGLNKVPILL---PEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNN 182 (405)
Q Consensus 106 ~~l~~~~n~l~~lp~~~---~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n 182 (405)
+.+++++|.++.+|... .++|+.|++++|.++.+.+..|.++++|+.|++++|.+..+.+..|.++++|+.|++++|
T Consensus 83 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 162 (477)
T 2id5_A 83 RTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC 162 (477)
T ss_dssp CEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC
T ss_pred CEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC
Confidence 78888888888888643 267888888888888888778888888888888888888888888888888888888888
Q ss_pred cCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCc-ccccCCCcccccCccccc
Q psy12210 183 NLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQN-ILDIPEHEFKCSGSSMET 261 (405)
Q Consensus 183 ~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~l~~~~~~~~~~~~~~ 261 (405)
.++.+++..|..+++|+.|++++|.+... ....+.....+....+.+.. +..++...+
T Consensus 163 ~l~~~~~~~l~~l~~L~~L~l~~n~i~~~------------~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--------- 221 (477)
T 2id5_A 163 NLTSIPTEALSHLHGLIVLRLRHLNINAI------------RDYSFKRLYRLKVLEISHWPYLDTMTPNCL--------- 221 (477)
T ss_dssp CCSSCCHHHHTTCTTCCEEEEESCCCCEE------------CTTCSCSCTTCCEEEEECCTTCCEECTTTT---------
T ss_pred cCcccChhHhcccCCCcEEeCCCCcCcEe------------ChhhcccCcccceeeCCCCccccccCcccc---------
Confidence 88888888888888888888888875410 00001001111111111100 000111000
Q ss_pred cccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCC---CCCCceEEEEE-ecceeee
Q psy12210 262 RSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPIL---LPEATTELTYM-VSIDRVD 337 (405)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~---~~~~l~~L~l~-n~i~~i~ 337 (405)
. ..+|+.|++++|.++.+|.. ..++|+.|+++ |.+..++
T Consensus 222 -----------------------------~--------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 264 (477)
T 2id5_A 222 -----------------------------Y--------GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIE 264 (477)
T ss_dssp -----------------------------T--------TCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEEC
T ss_pred -----------------------------c--------CccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccC
Confidence 0 01577888888888877732 24677888888 8888777
Q ss_pred ccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcccChhhcCCCccccCC
Q psy12210 338 KVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405 (405)
Q Consensus 338 ~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L 405 (405)
+..|.++++ +.|+|++|+|+.+.+..|.++++|+.|+|++|+|+++++..|..+++|++|
T Consensus 265 --------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 325 (477)
T 2id5_A 265 --------GSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETL 325 (477)
T ss_dssp --------TTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEE
T ss_pred --------hhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEE
Confidence 667777888 888888888888877778888888888888888888887777777777653
No 2
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=1.8e-28 Score=237.63 Aligned_cols=247 Identities=25% Similarity=0.380 Sum_probs=200.6
Q ss_pred CCCCCCCccccC--ceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCC
Q psy12210 94 EPSCPHPCRCAD--GIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGL 171 (405)
Q Consensus 94 ~~~~p~~~~c~~--~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l 171 (405)
...||..|.|.. ..++|++++++++|..++++++.|++++|.++.+++..|.++++|++|++++|.++.+.+..|.++
T Consensus 32 ~~~Cp~~C~C~~~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l 111 (440)
T 3zyj_A 32 AQTCPSVCSCSNQFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGL 111 (440)
T ss_dssp -CCCCSSSEECTTSCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTC
T ss_pred cccCCCCCEeCCCCCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCC
Confidence 367999999974 799999999999999999999999999999999999899999999999999999999999999999
Q ss_pred CCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCC-CcccccCCC
Q psy12210 172 KSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKG-QNILDIPEH 250 (405)
Q Consensus 172 ~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~l~~l~~~ 250 (405)
++|++|++++|.++.++++.|..+++|+.|++++|.+... ....+.....+..+.+.+ ..+..++
T Consensus 112 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~------------~~~~~~~l~~L~~L~l~~~~~l~~i~-- 177 (440)
T 3zyj_A 112 ANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESI------------PSYAFNRIPSLRRLDLGELKRLSYIS-- 177 (440)
T ss_dssp SSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEE------------CTTTTTTCTTCCEEECCCCTTCCEEC--
T ss_pred ccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCccccc------------CHHHhhhCcccCEeCCCCCCCcceeC--
Confidence 9999999999999999999999999999999999986510 011111111111122221 1111111
Q ss_pred cccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCC-CCCceEEEE
Q psy12210 251 EFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILL-PEATTELTY 329 (405)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~-~~~l~~L~l 329 (405)
...+.... +|++|++++|.++.+|... .++|+.|++
T Consensus 178 ------------------------------------~~~~~~l~-------~L~~L~L~~n~l~~~~~~~~l~~L~~L~L 214 (440)
T 3zyj_A 178 ------------------------------------EGAFEGLS-------NLRYLNLAMCNLREIPNLTPLIKLDELDL 214 (440)
T ss_dssp ------------------------------------TTTTTTCS-------SCCEEECTTSCCSSCCCCTTCSSCCEEEC
T ss_pred ------------------------------------cchhhccc-------ccCeecCCCCcCccccccCCCcccCEEEC
Confidence 11222222 6899999999999887533 368999999
Q ss_pred E-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcccChhhcCCCccccCC
Q psy12210 330 M-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405 (405)
Q Consensus 330 ~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L 405 (405)
+ |++..++ +..|.++++ +.|+|++|+|+.+++..|.++++|+.|+|++|+|+++++..|..+++|++|
T Consensus 215 s~N~l~~~~--------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 284 (440)
T 3zyj_A 215 SGNHLSAIR--------PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERI 284 (440)
T ss_dssp TTSCCCEEC--------TTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEE
T ss_pred CCCccCccC--------hhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEE
Confidence 9 9999988 788999999 999999999999999889999999999999999999998888888887753
No 3
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=2.4e-28 Score=237.60 Aligned_cols=247 Identities=23% Similarity=0.377 Sum_probs=201.5
Q ss_pred CCCCCCCccccC--ceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCC
Q psy12210 94 EPSCPHPCRCAD--GIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGL 171 (405)
Q Consensus 94 ~~~~p~~~~c~~--~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l 171 (405)
...||..|.|.. ..++|++++++++|..++++++.|++++|.|+.+++..|.++++|+.|++++|.++.+.+..|.++
T Consensus 43 ~~~Cp~~C~C~~~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l 122 (452)
T 3zyi_A 43 PQNCPSVCSCSNQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGL 122 (452)
T ss_dssp -CCCCTTSEECSSSCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred cCCCCCCCEECCCCcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCc
Confidence 468999999974 799999999999999999999999999999999999899999999999999999999999999999
Q ss_pred CCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCC-CcccccCCC
Q psy12210 172 KSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKG-QNILDIPEH 250 (405)
Q Consensus 172 ~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~l~~l~~~ 250 (405)
++|++|++++|.++.++++.|..+++|+.|++++|.+... ....+.....+..+.+.+ ..+..++.
T Consensus 123 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~------------~~~~~~~l~~L~~L~l~~~~~l~~i~~- 189 (452)
T 3zyi_A 123 ASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESI------------PSYAFNRVPSLMRLDLGELKKLEYISE- 189 (452)
T ss_dssp TTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEE------------CTTTTTTCTTCCEEECCCCTTCCEECT-
T ss_pred ccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCccee------------CHhHHhcCCcccEEeCCCCCCccccCh-
Confidence 9999999999999999999999999999999999986510 001111111111122221 11111221
Q ss_pred cccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCC-CCCceEEEE
Q psy12210 251 EFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILL-PEATTELTY 329 (405)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~-~~~l~~L~l 329 (405)
..+.... +|++|++++|+++.+|... .++|+.|++
T Consensus 190 -------------------------------------~~~~~l~-------~L~~L~L~~n~l~~~~~~~~l~~L~~L~L 225 (452)
T 3zyi_A 190 -------------------------------------GAFEGLF-------NLKYLNLGMCNIKDMPNLTPLVGLEELEM 225 (452)
T ss_dssp -------------------------------------TTTTTCT-------TCCEEECTTSCCSSCCCCTTCTTCCEEEC
T ss_pred -------------------------------------hhccCCC-------CCCEEECCCCcccccccccccccccEEEC
Confidence 1222222 6999999999999887433 478999999
Q ss_pred E-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcccChhhcCCCccccCC
Q psy12210 330 M-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405 (405)
Q Consensus 330 ~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L 405 (405)
+ |.+.+++ +..|.++++ +.|+|++|+|+.+++..|.++++|+.|+|++|+|+++++..|..+++|++|
T Consensus 226 s~N~l~~~~--------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 295 (452)
T 3zyi_A 226 SGNHFPEIR--------PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVEL 295 (452)
T ss_dssp TTSCCSEEC--------GGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEE
T ss_pred cCCcCcccC--------cccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEE
Confidence 9 9999998 788999999 999999999999999889999999999999999999998888888887753
No 4
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=4.6e-28 Score=221.10 Aligned_cols=114 Identities=30% Similarity=0.565 Sum_probs=107.5
Q ss_pred CCCCCccccC---ceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCC
Q psy12210 96 SCPHPCRCAD---GIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLK 172 (405)
Q Consensus 96 ~~p~~~~c~~---~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~ 172 (405)
.||..|.|.. +.++|++++++.+|..++++++.|++++|.++.+++..|.++++|+.|++++|.++.+.+..|.+++
T Consensus 1 ~CP~~C~C~~~~~~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 80 (285)
T 1ozn_A 1 PCPGACVCYNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA 80 (285)
T ss_dssp CCCTTCEEECSSSCEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred CcCCCceECCCCCeEEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCcc
Confidence 4999999975 6799999999999999999999999999999999988899999999999999999999889999999
Q ss_pred CCCEEEccCCc-CcccChhhhhcccCCcEEEeecCccc
Q psy12210 173 SLTSLTLNNNN-LTYLPDGVFAELFRLRTLRISENSFI 209 (405)
Q Consensus 173 ~L~~L~l~~n~-l~~l~~~~f~~l~~L~~L~l~~N~l~ 209 (405)
+|++|++++|. +..+++..|..+++|+.|++++|.+.
T Consensus 81 ~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~ 118 (285)
T 1ozn_A 81 LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ 118 (285)
T ss_dssp TCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred CCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCC
Confidence 99999999997 99998888999999999999999854
No 5
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=5.6e-28 Score=235.13 Aligned_cols=344 Identities=16% Similarity=0.168 Sum_probs=224.7
Q ss_pred ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210 2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS 81 (405)
Q Consensus 2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~ 81 (405)
.|+|++|+|+++++.+|+++++|++|++++|.+.+..+. .........+.+++++|.+..+....|...
T Consensus 34 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~-----------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 102 (455)
T 3v47_A 34 YVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRN-----------NTFRGLSSLIILKLDYNQFLQLETGAFNGL 102 (455)
T ss_dssp EEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECT-----------TTTTTCTTCCEEECTTCTTCEECTTTTTTC
T ss_pred EEEecCCccCcCChhHhccCccccEEECcCCcccceECc-----------ccccccccCCEEeCCCCccCccChhhccCc
Confidence 588999999999888899999999999999987532211 111112234556777777777655444322
Q ss_pred CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccc-cCCC--C--CCCccEEEccCCCCCCCCccc-ccCCCCCcEEec
Q psy12210 82 GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNK-VPIL--L--PEATTELRLEQNDITELPPKA-FANYKRLRRIDL 155 (405)
Q Consensus 82 ~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~-lp~~--~--~~~L~~L~L~~n~i~~l~~~~-~~~l~~L~~L~l 155 (405)
. .++++++++|.++. +|.. + .++|++|++++|.++.+.+.. +.++++|++|++
T Consensus 103 ~---------------------~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 161 (455)
T 3v47_A 103 A---------------------NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDL 161 (455)
T ss_dssp T---------------------TCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEEC
T ss_pred c---------------------cCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeC
Confidence 1 13888888888875 2322 2 357888888888888886654 788888888888
Q ss_pred CCCcceeecccccCCC--CCCCEEEccCCcCcccChhhh--------hcccCCcEEEeecCccccccCchHHHHHHhhcC
Q psy12210 156 SKNQISKVAVDAFQGL--KSLTSLTLNNNNLTYLPDGVF--------AELFRLRTLRISENSFICDCHLSWLHRWLKRYP 225 (405)
Q Consensus 156 s~n~l~~~~~~~~~~l--~~L~~L~l~~n~l~~l~~~~f--------~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~ 225 (405)
++|.++.+.+..+..+ .+|+.|++++|.+..+++..+ ..+++|+.|++++|.+.... ...+........
T Consensus 162 ~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-~~~~~~~~~~~~ 240 (455)
T 3v47_A 162 TFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESM-AKRFFDAIAGTK 240 (455)
T ss_dssp TTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHH-HHHHHHHTTTCC
T ss_pred CCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccc-hhhhhccccccc
Confidence 8888888877767665 678888888888887775432 24578999999999875210 011111110011
Q ss_pred CCCCcccc--CCCCCCCCCcccccCCCcccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccC
Q psy12210 226 RLGLYTKC--FAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCAD 303 (405)
Q Consensus 226 ~~~~~~~~--~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l 303 (405)
........ .....+....+.......+... .........++.+.+.......+.... +|
T Consensus 241 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~L~~L~l~~n~l~~~~~~~~~~l~-------~L 301 (455)
T 3v47_A 241 IQSLILSNSYNMGSSFGHTNFKDPDNFTFKGL------------EASGVKTCDLSKSKIFALLKSVFSHFT-------DL 301 (455)
T ss_dssp EEEEECTTCTTTSCCTTCCSSCCCCTTTTGGG------------TTSCCCEEECCSSCCCEECTTTTTTCT-------TC
T ss_pred eeeEeeccccccccccchhhhccCcccccccc------------cccCceEEEecCccccccchhhcccCC-------CC
Confidence 00000000 0000111111111111111110 011222333445555554444444443 69
Q ss_pred ceeecCCCCCCcCCCCC---CCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccC
Q psy12210 304 GIVDCREKGLNKVPILL---PEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRL 378 (405)
Q Consensus 304 ~~l~l~~n~l~~~p~~~---~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L 378 (405)
++|++++|.++.++... .+.|++|+++ |.+.+++ +..|+++++ +.|+|++|+|+.+.+..|.++++|
T Consensus 302 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 373 (455)
T 3v47_A 302 EQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSID--------SRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNL 373 (455)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC--------GGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred CEEECCCCcccccChhHhcCcccCCEEECCCCccCCcC--------hhHhcCcccCCEEECCCCcccccChhhccccccc
Confidence 99999999998886543 3688999999 9998887 778888999 999999999999988889999999
Q ss_pred ceeecccCCCcccChhhcCCCccccCC
Q psy12210 379 RRIRLEQNDITELPPKAFANYKRLRRM 405 (405)
Q Consensus 379 ~~L~L~~N~l~~i~~~~f~~l~~L~~L 405 (405)
+.|+|++|+++++++..|+++++|++|
T Consensus 374 ~~L~L~~N~l~~~~~~~~~~l~~L~~L 400 (455)
T 3v47_A 374 KELALDTNQLKSVPDGIFDRLTSLQKI 400 (455)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred cEEECCCCccccCCHhHhccCCcccEE
Confidence 999999999999998888888888754
No 6
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.96 E-value=2.9e-28 Score=238.70 Aligned_cols=283 Identities=22% Similarity=0.288 Sum_probs=214.2
Q ss_pred CCCCCCccccC--ceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCC
Q psy12210 95 PSCPHPCRCAD--GIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLK 172 (405)
Q Consensus 95 ~~~p~~~~c~~--~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~ 172 (405)
..||..|.|.. +.++|++++++.+|..+++.++.|++++|.++.+++..|.++++|++|++++|.++.+.+..|.+++
T Consensus 1 ~~Cp~~C~C~~~~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~ 80 (477)
T 2id5_A 1 TGCPPRCECSAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLF 80 (477)
T ss_dssp CCCSTTCEEETTTTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred CcccCCCeECCCCCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCc
Confidence 36999999975 7999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred CCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcc
Q psy12210 173 SLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEF 252 (405)
Q Consensus 173 ~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~ 252 (405)
+|++|++++|.++.++.+.|..+++|+.|++++|.+... .+..+.....+..+.+.++.+..+....|
T Consensus 81 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 148 (477)
T 2id5_A 81 NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVIL------------LDYMFQDLYNLKSLEVGDNDLVYISHRAF 148 (477)
T ss_dssp TCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEE------------CTTTTTTCTTCCEEEECCTTCCEECTTSS
T ss_pred cCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccC------------ChhHccccccCCEEECCCCccceeChhhc
Confidence 999999999999999999999999999999999987521 11122223334444455555555444433
Q ss_pred cccCccccccc-----------cceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCC-CCcCCCCC
Q psy12210 253 KCSGSSMETRS-----------KIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKG-LNKVPILL 320 (405)
Q Consensus 253 ~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~-l~~~p~~~ 320 (405)
...... ..+. ..+..........++.+.+.......+.... +|+.|++++|. +..+|...
T Consensus 149 ~~l~~L-~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~-------~L~~L~l~~~~~~~~~~~~~ 220 (477)
T 2id5_A 149 SGLNSL-EQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLY-------RLKVLEISHWPYLDTMTPNC 220 (477)
T ss_dssp TTCTTC-CEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCT-------TCCEEEEECCTTCCEECTTT
T ss_pred cCCCCC-CEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCc-------ccceeeCCCCccccccCccc
Confidence 221100 0000 0011111222223333444444444443333 67788887764 34445444
Q ss_pred C--CCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcccChhhc
Q psy12210 321 P--EATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAF 396 (405)
Q Consensus 321 ~--~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f 396 (405)
+ .+++.|+++ |+++.++ ...|..+++ +.|+|++|+|+.+++..|.++++|+.|+|++|+++++.+.+|
T Consensus 221 ~~~~~L~~L~l~~n~l~~~~--------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 292 (477)
T 2id5_A 221 LYGLNLTSLSITHCNLTAVP--------YLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAF 292 (477)
T ss_dssp TTTCCCSEEEEESSCCCSCC--------HHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTB
T ss_pred ccCccccEEECcCCcccccC--------HHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHh
Confidence 3 478899999 9998888 677899999 999999999999999999999999999999999999999899
Q ss_pred CCCccccCC
Q psy12210 397 ANYKRLRRM 405 (405)
Q Consensus 397 ~~l~~L~~L 405 (405)
.++++|++|
T Consensus 293 ~~l~~L~~L 301 (477)
T 2id5_A 293 RGLNYLRVL 301 (477)
T ss_dssp TTCTTCCEE
T ss_pred cCcccCCEE
Confidence 999988764
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.95 E-value=3.7e-27 Score=237.60 Aligned_cols=155 Identities=11% Similarity=0.061 Sum_probs=87.9
Q ss_pred ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210 2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS 81 (405)
Q Consensus 2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~ 81 (405)
.|+|++|+|+++++.+|+++++|++|++++|.+++.. +.........+.+++++|.+..+....|...
T Consensus 37 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~------------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 104 (606)
T 3t6q_A 37 CLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIH------------EDTFQSQHRLDTLVLTANPLIFMAETALSGP 104 (606)
T ss_dssp EEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEEC------------TTTTTTCTTCCEEECTTCCCSEECTTTTSSC
T ss_pred EEEccCCccCcCChhHhccCccceEEECCCCccceeC------------hhhccCccccCeeeCCCCcccccChhhhccc
Confidence 5899999999999989999999999999999987422 2222223335566777777777665554332
Q ss_pred -CCCCCCCCCCCCCCCCC-CCccc-cCceEEcCCCCccccC--CCC-CCCccEEEccCCCCCCCCcccccCCCCCc--EE
Q psy12210 82 -GPVEKPTGECAAEPSCP-HPCRC-ADGIVDCREKGLNKVP--ILL-PEATTELRLEQNDITELPPKAFANYKRLR--RI 153 (405)
Q Consensus 82 -~~~~~~~~~~~~~~~~p-~~~~c-~~~~l~~~~n~l~~lp--~~~-~~~L~~L~L~~n~i~~l~~~~~~~l~~L~--~L 153 (405)
......+..+......| ....+ .++.+++++|.++.++ ... .+++++|++++|.++.+++..|+.+++|+ .|
T Consensus 105 ~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L 184 (606)
T 3t6q_A 105 KALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSL 184 (606)
T ss_dssp TTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEE
T ss_pred ccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEE
Confidence 22222222222211111 11122 1356666666655542 211 24556666666666655555555566665 55
Q ss_pred ecCCCcceeeccccc
Q psy12210 154 DLSKNQISKVAVDAF 168 (405)
Q Consensus 154 ~ls~n~l~~~~~~~~ 168 (405)
++++|.+..+++..|
T Consensus 185 ~l~~n~l~~~~~~~~ 199 (606)
T 3t6q_A 185 NLNGNDIAGIEPGAF 199 (606)
T ss_dssp ECTTCCCCEECTTTT
T ss_pred ecCCCccCccChhHh
Confidence 666666555554433
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.95 E-value=1.8e-27 Score=239.97 Aligned_cols=365 Identities=15% Similarity=0.151 Sum_probs=191.5
Q ss_pred ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210 2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS 81 (405)
Q Consensus 2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~ 81 (405)
.|++++|+|++++..++..+++|++|++++|.+++..+.. +........ ..+++++|.+..++...|...
T Consensus 133 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-----~~~l~~L~~-----l~L~l~~n~l~~~~~~~~~~~ 202 (606)
T 3t6q_A 133 SLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKED-----MSSLQQATN-----LSLNLNGNDIAGIEPGAFDSA 202 (606)
T ss_dssp EEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHH-----HHTTTTCCS-----EEEECTTCCCCEECTTTTTTC
T ss_pred EEECCCCcccccCcccccCCcccCEEEcccCcccccChhh-----hhhhcccce-----eEEecCCCccCccChhHhhhc
Confidence 5889999999876555667899999999999887533311 111111110 023455555555444433221
Q ss_pred CCCCCCCCC--------------------------CCCCCCCC----CCccccCceEEcCCCCccccCCCC---CCCccE
Q psy12210 82 GPVEKPTGE--------------------------CAAEPSCP----HPCRCADGIVDCREKGLNKVPILL---PEATTE 128 (405)
Q Consensus 82 ~~~~~~~~~--------------------------~~~~~~~p----~~~~c~~~~l~~~~n~l~~lp~~~---~~~L~~ 128 (405)
......+.. .......+ ..+....+.+++++|.++.+|... .++++.
T Consensus 203 ~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 282 (606)
T 3t6q_A 203 VFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQE 282 (606)
T ss_dssp EEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSE
T ss_pred cccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCE
Confidence 100000000 00000000 011112355566666655555432 135556
Q ss_pred EEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCc-ccChhhhhcccCCcEEEeecCc
Q psy12210 129 LRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLT-YLPDGVFAELFRLRTLRISENS 207 (405)
Q Consensus 129 L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~f~~l~~L~~L~l~~N~ 207 (405)
|++++|.++.++.. +.++++|++|++++|.++.+.+..+..+++|++|++++|.+. .++...|..+++|+.|++++|.
T Consensus 283 L~l~~n~l~~lp~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 361 (606)
T 3t6q_A 283 LDLTATHLSELPSG-LVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD 361 (606)
T ss_dssp EECTTSCCSCCCSS-CCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSC
T ss_pred EeccCCccCCCChh-hcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCc
Confidence 66666666555542 555556666666666655555555555555666666555544 4444445555556666555555
Q ss_pred cccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCccccccc------------cceecccccCCC
Q psy12210 208 FICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRS------------KIYREECSTDFH 275 (405)
Q Consensus 208 l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~ 275 (405)
+.... ..+........+....+.++.+..+....+...+. +..+. ..+.........
T Consensus 362 l~~~~----------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 430 (606)
T 3t6q_A 362 IETSD----------CCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQ-LELLDLAFTRLKVKDAQSPFQNLHLLKVL 430 (606)
T ss_dssp CCEEE----------ESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTT-CSEEECTTCCEECCTTCCTTTTCTTCCEE
T ss_pred ccccc----------CcchhcccCCCCCEEECCCCcCCcCCHHHhcCCcc-CCeEECCCCcCCCcccchhhhCcccCCEE
Confidence 43110 00001111112222223333333222222211100 00000 001112223333
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcC--CCC----CCCCceEEEEE-ecceeeeccchhcccccc
Q psy12210 276 PYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKV--PIL----LPEATTELTYM-VSIDRVDKVLLYSYISNN 348 (405)
Q Consensus 276 ~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~--p~~----~~~~l~~L~l~-n~i~~i~~~~~~~~~~~~ 348 (405)
.++.+.+.......+.... +|++|++++|.++.. +.. ..+.++.|+++ |++.+++ +..
T Consensus 431 ~l~~n~l~~~~~~~~~~l~-------~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--------~~~ 495 (606)
T 3t6q_A 431 NLSHSLLDISSEQLFDGLP-------ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID--------QHA 495 (606)
T ss_dssp ECTTCCCBTTCTTTTTTCT-------TCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEEC--------TTT
T ss_pred ECCCCccCCcCHHHHhCCC-------CCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccC--------hhh
Confidence 4455555554444444433 688888888887652 211 13678888888 8888877 677
Q ss_pred ccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcccChhhcCCCccccC
Q psy12210 349 FKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404 (405)
Q Consensus 349 ~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~ 404 (405)
|.++++ +.|+|++|+++.+++..|.++++| .|+|++|+++++++..|..+++|++
T Consensus 496 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~ 551 (606)
T 3t6q_A 496 FTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRT 551 (606)
T ss_dssp TTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSE
T ss_pred hccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCE
Confidence 888888 888888888888888888888888 8888888888888777776666654
No 9
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.95 E-value=2.4e-27 Score=220.95 Aligned_cols=257 Identities=25% Similarity=0.333 Sum_probs=196.0
Q ss_pred CCCCCCccccCceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCC
Q psy12210 95 PSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSL 174 (405)
Q Consensus 95 ~~~p~~~~c~~~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L 174 (405)
..||..|.|..+.++|++++++.+|..+++.++.|++++|.++.+++..|.++++|++|++++|.++.+.+..|.++++|
T Consensus 23 ~~cp~~c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (330)
T 1xku_A 23 PVCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 102 (330)
T ss_dssp CCCCTTCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred CCCCCCCcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCC
Confidence 56999999999999999999999999999999999999999999999889999999999999999999988999999999
Q ss_pred CEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccc--cCCCcc
Q psy12210 175 TSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILD--IPEHEF 252 (405)
Q Consensus 175 ~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--l~~~~~ 252 (405)
++|++++|.++.++...+ ++|+.|++++|.+.... ... +.....+....+.++.+.. +....
T Consensus 103 ~~L~Ls~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~-----~~~-------~~~l~~L~~L~l~~n~l~~~~~~~~~- 166 (330)
T 1xku_A 103 ERLYLSKNQLKELPEKMP---KTLQELRVHENEITKVR-----KSV-------FNGLNQMIVVELGTNPLKSSGIENGA- 166 (330)
T ss_dssp CEEECCSSCCSBCCSSCC---TTCCEEECCSSCCCBBC-----HHH-------HTTCTTCCEEECCSSCCCGGGBCTTG-
T ss_pred CEEECCCCcCCccChhhc---ccccEEECCCCcccccC-----HhH-------hcCCccccEEECCCCcCCccCcChhh-
Confidence 999999999999987653 78999999999865210 000 0111122223333333322 11111
Q ss_pred cccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCC---CCCceEEEE
Q psy12210 253 KCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILL---PEATTELTY 329 (405)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~---~~~l~~L~l 329 (405)
+..........++.+.+..++.... .++++|++++|.++.++... .++++.|++
T Consensus 167 -------------~~~l~~L~~L~l~~n~l~~l~~~~~----------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 223 (330)
T 1xku_A 167 -------------FQGMKKLSYIRIADTNITTIPQGLP----------PSLTELHLDGNKITKVDAASLKGLNNLAKLGL 223 (330)
T ss_dssp -------------GGGCTTCCEEECCSSCCCSCCSSCC----------TTCSEEECTTSCCCEECTGGGTTCTTCCEEEC
T ss_pred -------------ccCCCCcCEEECCCCccccCCcccc----------ccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 1222233334455555554443221 26889999999988875432 368889999
Q ss_pred E-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcccChhhcCCC
Q psy12210 330 M-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANY 399 (405)
Q Consensus 330 ~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l 399 (405)
+ |.+.+++ +..|..+++ +.|+|++|+|+.++.. +..+++|+.|+|++|+|++++...|...
T Consensus 224 s~n~l~~~~--------~~~~~~l~~L~~L~L~~N~l~~lp~~-l~~l~~L~~L~l~~N~i~~~~~~~f~~~ 286 (330)
T 1xku_A 224 SFNSISAVD--------NGSLANTPHLRELHLNNNKLVKVPGG-LADHKYIQVVYLHNNNISAIGSNDFCPP 286 (330)
T ss_dssp CSSCCCEEC--------TTTGGGSTTCCEEECCSSCCSSCCTT-TTTCSSCCEEECCSSCCCCCCTTSSSCS
T ss_pred CCCcCceeC--------hhhccCCCCCCEEECCCCcCccCChh-hccCCCcCEEECCCCcCCccChhhcCCc
Confidence 9 9998888 677888889 9999999999988764 7788999999999999999988877543
No 10
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.95 E-value=2.1e-26 Score=214.80 Aligned_cols=274 Identities=22% Similarity=0.233 Sum_probs=200.6
Q ss_pred CCCCCCccccCceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCC
Q psy12210 95 PSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSL 174 (405)
Q Consensus 95 ~~~p~~~~c~~~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L 174 (405)
..||..|.|..+.++|++++++.+|..+++.++.|++++|.++.+++..|.++++|++|++++|.++.+.+..|.++++|
T Consensus 25 ~~cp~~c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 104 (332)
T 2ft3_A 25 AMCPFGCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKL 104 (332)
T ss_dssp CCCCSSCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTC
T ss_pred CCCCCCCcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCC
Confidence 57999999999999999999999999999999999999999999998889999999999999999999988999999999
Q ss_pred CEEEccCCcCcccChhhhhcccCCcEEEeecCccccccC-----chHHHHH---------HhhcCCCCCccccCCCCCCC
Q psy12210 175 TSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCH-----LSWLHRW---------LKRYPRLGLYTKCFAPSHIK 240 (405)
Q Consensus 175 ~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~-----l~~~~~~---------~~~~~~~~~~~~~~~~~~l~ 240 (405)
++|++++|.++.++...+ ++|+.|++++|.+..... +..+... ....+..+... .+....+.
T Consensus 105 ~~L~L~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~ 180 (332)
T 2ft3_A 105 QKLYISKNHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRIS 180 (332)
T ss_dssp CEEECCSSCCCSCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCC
T ss_pred CEEECCCCcCCccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECc
Confidence 999999999998887553 678888888877652100 0000000 00000000000 12222223
Q ss_pred CCcccccCCCcccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCC
Q psy12210 241 GQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILL 320 (405)
Q Consensus 241 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~ 320 (405)
++.+..++...+ .......++.+.+.......+.... +|++|++++|.++.++...
T Consensus 181 ~n~l~~l~~~~~-----------------~~L~~L~l~~n~i~~~~~~~l~~l~-------~L~~L~L~~N~l~~~~~~~ 236 (332)
T 2ft3_A 181 EAKLTGIPKDLP-----------------ETLNELHLDHNKIQAIELEDLLRYS-------KLYRLGLGHNQIRMIENGS 236 (332)
T ss_dssp SSBCSSCCSSSC-----------------SSCSCCBCCSSCCCCCCTTSSTTCT-------TCSCCBCCSSCCCCCCTTG
T ss_pred CCCCCccCcccc-----------------CCCCEEECCCCcCCccCHHHhcCCC-------CCCEEECCCCcCCcCChhH
Confidence 333332222111 1233344556666666555554444 7899999999999887543
Q ss_pred ---CCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCC------ccCceeecccCCCc
Q psy12210 321 ---PEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANY------KRLRRIRLEQNDIT 389 (405)
Q Consensus 321 ---~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l------~~L~~L~L~~N~l~ 389 (405)
.++++.|+++ |++..++ ..+..+++ +.|++++|+|+.+++..|... ++|+.|++++|.+.
T Consensus 237 ~~~l~~L~~L~L~~N~l~~lp---------~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 237 LSFLPTLRELHLDNNKLSRVP---------AGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp GGGCTTCCEEECCSSCCCBCC---------TTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred hhCCCCCCEEECCCCcCeecC---------hhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 4688999999 9999887 56888889 999999999999988877653 67889999999987
Q ss_pred --ccChhhcCCCccccCC
Q psy12210 390 --ELPPKAFANYKRLRRM 405 (405)
Q Consensus 390 --~i~~~~f~~l~~L~~L 405 (405)
++.+.+|..+++|+.+
T Consensus 308 ~~~~~~~~~~~l~~L~~l 325 (332)
T 2ft3_A 308 YWEVQPATFRCVTDRLAI 325 (332)
T ss_dssp GGGSCGGGGTTBCCSTTE
T ss_pred ccccCcccccccchhhhh
Confidence 7778888888888753
No 11
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=1.6e-27 Score=246.32 Aligned_cols=347 Identities=16% Similarity=0.126 Sum_probs=187.7
Q ss_pred ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCccc-ccCCCcccc
Q psy12210 2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNIL-DIPEHEFKC 80 (405)
Q Consensus 2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~l~~~~~~~ 80 (405)
.|+|++|++++..+..|+++++|++|++++|.++|..+...+. .. ...+.+++++|.+. .++......
T Consensus 298 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~----~l-------~~L~~L~Ls~n~l~~~~p~~l~~l 366 (768)
T 3rgz_A 298 GLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL----KM-------RGLKVLDLSFNEFSGELPESLTNL 366 (768)
T ss_dssp EEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHT----TC-------TTCCEEECCSSEEEECCCTTHHHH
T ss_pred EEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHh----cC-------CCCCEEeCcCCccCccccHHHHhh
Confidence 3556666666555555666666666666666665433322111 11 11233455555555 333332222
Q ss_pred C-CCCCCCCCCCCCCC-CCCCCcc--c-cCceEEcCCCCcc-ccCCCC--CCCccEEEccCCCCCCCCcccccCCCCCcE
Q psy12210 81 S-GPVEKPTGECAAEP-SCPHPCR--C-ADGIVDCREKGLN-KVPILL--PEATTELRLEQNDITELPPKAFANYKRLRR 152 (405)
Q Consensus 81 ~-~~~~~~~~~~~~~~-~~p~~~~--c-~~~~l~~~~n~l~-~lp~~~--~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~ 152 (405)
. ......+..+.... ..+..+. + .++.+++++|.++ .+|..+ .++++.|++++|.+++..+..+.++++|+.
T Consensus 367 ~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 446 (768)
T 3rgz_A 367 SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRD 446 (768)
T ss_dssp TTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCE
T ss_pred hcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCE
Confidence 1 22222222222111 1111221 1 2466677776665 344433 256677777777776655556677777777
Q ss_pred EecCCCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccc
Q psy12210 153 IDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTK 232 (405)
Q Consensus 153 L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~ 232 (405)
|++++|.+.+..|..+..+++|++|++++|.++...+..|..+++|+.|++++|.+.. ..+.......
T Consensus 447 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~------------~~p~~~~~l~ 514 (768)
T 3rgz_A 447 LKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG------------EIPKWIGRLE 514 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS------------CCCGGGGGCT
T ss_pred EECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCC------------cCChHHhcCC
Confidence 7777777766666666677777777777777765555566667777777777776541 1111112222
Q ss_pred cCCCCCCCCCcccccCCCcccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCC-------------------
Q psy12210 233 CFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEP------------------- 293 (405)
Q Consensus 233 ~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~------------------- 293 (405)
.+....+.++.+....+..+.. ........++.+.+...-+..+...
T Consensus 515 ~L~~L~L~~N~l~~~~p~~l~~--------------l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (768)
T 3rgz_A 515 NLAILKLSNNSFSGNIPAELGD--------------CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN 580 (768)
T ss_dssp TCCEEECCSSCCEEECCGGGGG--------------CTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEEC
T ss_pred CCCEEECCCCcccCcCCHHHcC--------------CCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccc
Confidence 3344445555554333322221 1222233334443331111000000
Q ss_pred --------------------------------------------CCCCCccccCceeecCCCCCCc-CCCCC--CCCceE
Q psy12210 294 --------------------------------------------SCPHPCRCADGIVDCREKGLNK-VPILL--PEATTE 326 (405)
Q Consensus 294 --------------------------------------------~~~~~~~~~l~~l~l~~n~l~~-~p~~~--~~~l~~ 326 (405)
........+++++|+++|+++. +|..+ .+.++.
T Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~ 660 (768)
T 3rgz_A 581 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFI 660 (768)
T ss_dssp CSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCE
T ss_pred ccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCE
Confidence 0000112357788888888874 45443 367888
Q ss_pred EEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcccCh
Q psy12210 327 LTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPP 393 (405)
Q Consensus 327 L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~ 393 (405)
|+++ |++++.. +..|+++++ +.|||++|+++...|..|+++++|+.|||++|++++..|
T Consensus 661 L~Ls~N~l~g~i--------p~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP 721 (768)
T 3rgz_A 661 LNLGHNDISGSI--------PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721 (768)
T ss_dssp EECCSSCCCSCC--------CGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECC
T ss_pred EeCcCCccCCCC--------ChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCC
Confidence 8888 8887554 577888888 888888888887777778888888888888888776444
No 12
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=4.1e-27 Score=217.02 Aligned_cols=242 Identities=20% Similarity=0.316 Sum_probs=166.8
Q ss_pred CCCCccccCceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeec--ccccCCCCCC
Q psy12210 97 CPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVA--VDAFQGLKSL 174 (405)
Q Consensus 97 ~p~~~~c~~~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~--~~~~~~l~~L 174 (405)
||..|.|..+.++|++++++++|..+++++++|++++|.++.+++..|.++++|+.|++++|.++.+. +..+.++++|
T Consensus 1 CP~~C~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L 80 (306)
T 2z66_A 1 CPSRCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSL 80 (306)
T ss_dssp CCTTCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCC
T ss_pred CcCCCeeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccccccccc
Confidence 89999999999999999999999999999999999999999999988999999999999999998664 4567789999
Q ss_pred CEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccc
Q psy12210 175 TSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKC 254 (405)
Q Consensus 175 ~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~ 254 (405)
++|++++|.+..++.. |..+++|+.|++++|.+..... .........+....+.++.+.......+
T Consensus 81 ~~L~Ls~n~i~~l~~~-~~~l~~L~~L~l~~n~l~~~~~-----------~~~~~~l~~L~~L~l~~n~l~~~~~~~~-- 146 (306)
T 2z66_A 81 KYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSE-----------FSVFLSLRNLIYLDISHTHTRVAFNGIF-- 146 (306)
T ss_dssp CEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESSTT-----------TTTTTTCTTCCEEECTTSCCEECSTTTT--
T ss_pred CEEECCCCccccChhh-cCCCCCCCEEECCCCccccccc-----------chhhhhccCCCEEECCCCcCCccchhhc--
Confidence 9999999999998864 7889999999999998762100 0011112222223333333333222222
Q ss_pred cCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCc--CCCCC--CCCceEEEEE
Q psy12210 255 SGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNK--VPILL--PEATTELTYM 330 (405)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~--~p~~~--~~~l~~L~l~ 330 (405)
.... +|++|++++|.++. +|..+ .+++++|+++
T Consensus 147 ------------------------------------~~l~-------~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls 183 (306)
T 2z66_A 147 ------------------------------------NGLS-------SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183 (306)
T ss_dssp ------------------------------------TTCT-------TCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred ------------------------------------ccCc-------CCCEEECCCCccccccchhHHhhCcCCCEEECC
Confidence 1111 46666666666654 33332 2456666666
Q ss_pred -ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcccChhhcCCC-cccc
Q psy12210 331 -VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANY-KRLR 403 (405)
Q Consensus 331 -n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l-~~L~ 403 (405)
|++.+++ +..|..+++ +.|+|++|+++.+++..|..+++|+.|+|++|+++++.+..+..+ ++|+
T Consensus 184 ~n~l~~~~--------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~ 251 (306)
T 2z66_A 184 QCQLEQLS--------PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA 251 (306)
T ss_dssp TSCCCEEC--------TTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCC
T ss_pred CCCcCCcC--------HHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCC
Confidence 6666665 455666666 666666666666665556666666666666666666555555554 2444
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=5.7e-27 Score=233.45 Aligned_cols=349 Identities=12% Similarity=0.148 Sum_probs=204.7
Q ss_pred ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210 2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS 81 (405)
Q Consensus 2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~ 81 (405)
.|+|++|+|+++++.+|.++++|++|++++|++++..+ .........+.+++++|.+..++...|...
T Consensus 30 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~------------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 97 (549)
T 2z81_A 30 SLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEG------------DAFYSLGSLEHLDLSDNHLSSLSSSWFGPL 97 (549)
T ss_dssp EEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECT------------TTTTTCTTCCEEECTTSCCCSCCHHHHTTC
T ss_pred EEECcCCccCccChhhhhcCCcccEEECCCCCcCccCh------------hhccccccCCEEECCCCccCccCHHHhccC
Confidence 58889999998888888999999999999998874221 111222335567778888777766544322
Q ss_pred CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCcccc--CCCC--CCCccEEEccCCC-CCCCCcccccCCCCCcEEecC
Q psy12210 82 GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKV--PILL--PEATTELRLEQND-ITELPPKAFANYKRLRRIDLS 156 (405)
Q Consensus 82 ~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~l--p~~~--~~~L~~L~L~~n~-i~~l~~~~~~~l~~L~~L~ls 156 (405)
.. ++++++++|.++.+ |..+ .+++++|++++|. +..+++..|.++++|++|+++
T Consensus 98 ~~---------------------L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~ 156 (549)
T 2z81_A 98 SS---------------------LKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIK 156 (549)
T ss_dssp TT---------------------CCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE
T ss_pred CC---------------------CcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeecc
Confidence 11 26666666666643 3323 2466666666666 555555556666666666666
Q ss_pred CCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCcccccc------------------------
Q psy12210 157 KNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDC------------------------ 212 (405)
Q Consensus 157 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~------------------------ 212 (405)
+|.++...+..+..+++|+.|+++.|.+..++...+..+++|+.|++++|.+....
T Consensus 157 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 236 (549)
T 2z81_A 157 ALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLT 236 (549)
T ss_dssp ETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEE
T ss_pred CCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccc
Confidence 66666666566665555555555555555554444444555555555555433210
Q ss_pred -------------------------C---------------------------------------chHHHHHHhh-----
Q psy12210 213 -------------------------H---------------------------------------LSWLHRWLKR----- 223 (405)
Q Consensus 213 -------------------------~---------------------------------------l~~~~~~~~~----- 223 (405)
. +..+......
T Consensus 237 ~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~ 316 (549)
T 2z81_A 237 DESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRIT 316 (549)
T ss_dssp HHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEE
T ss_pred hhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEE
Confidence 0 0000000000
Q ss_pred ---cCC--CC----CccccCCCCCCCCCcccccCC------CcccccC------cccccc---ccceecccccCCCCCCC
Q psy12210 224 ---YPR--LG----LYTKCFAPSHIKGQNILDIPE------HEFKCSG------SSMETR---SKIYREECSTDFHPYNS 279 (405)
Q Consensus 224 ---~~~--~~----~~~~~~~~~~l~~~~l~~l~~------~~~~~~~------~~~~~~---~~~~~~~~~~~~~~~~~ 279 (405)
... .. .....+....+.++.+..... ..+.... ...... ...+..........++.
T Consensus 317 l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~ 396 (549)
T 2z81_A 317 VENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISR 396 (549)
T ss_dssp EESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTT
T ss_pred eccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCC
Confidence 000 00 011222333344433332110 0000000 000000 01123334444555666
Q ss_pred CCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCCCCCceEEEEE-ecceeeeccchhccccccccCCcc-ceE
Q psy12210 280 CPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSR 357 (405)
Q Consensus 280 ~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L 357 (405)
+.++.++... .. ..+|++|++++|.++.+|..+++.+++|+++ |++++++ ..+++ +.|
T Consensus 397 N~l~~lp~~~-~~-------~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~------------~~l~~L~~L 456 (549)
T 2z81_A 397 NTFHPMPDSC-QW-------PEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFS------------LFLPRLQEL 456 (549)
T ss_dssp CCCCCCCSCC-CC-------CTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCC------------CCCTTCCEE
T ss_pred CCCccCChhh-cc-------cccccEEECCCCCcccccchhcCCceEEECCCCChhhhc------------ccCChhcEE
Confidence 6666544321 11 2368899999999988888888889999999 8887654 46788 999
Q ss_pred EecCCCCcccCcccccCCccCceeecccCCCcccChhhcCCCccccCC
Q psy12210 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405 (405)
Q Consensus 358 ~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L 405 (405)
+|++|+|+.++. ...+++|+.|+|++|+++++++..|.++++|++|
T Consensus 457 ~Ls~N~l~~ip~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 502 (549)
T 2z81_A 457 YISRNKLKTLPD--ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKI 502 (549)
T ss_dssp ECCSSCCSSCCC--GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEE
T ss_pred ECCCCccCcCCC--cccCccCCEEecCCCccCCcCHHHHhcCcccCEE
Confidence 999999998886 3568999999999999999998888888887754
No 14
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.95 E-value=2.5e-26 Score=214.07 Aligned_cols=274 Identities=17% Similarity=0.192 Sum_probs=194.4
Q ss_pred ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210 2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS 81 (405)
Q Consensus 2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~ 81 (405)
.++++++.++.+|... .++++.|++++|.+++..+ .........+.++++++.+..+....|...
T Consensus 35 ~l~~~~~~l~~lp~~~---~~~l~~L~L~~n~i~~~~~------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 99 (330)
T 1xku_A 35 VVQCSDLGLEKVPKDL---PPDTALLDLQNNKITEIKD------------GDFKNLKNLHTLILINNKISKISPGAFAPL 99 (330)
T ss_dssp EEECTTSCCCSCCCSC---CTTCCEEECCSSCCCCBCT------------TTTTTCTTCCEEECCSSCCCCBCTTTTTTC
T ss_pred EEEecCCCccccCccC---CCCCeEEECCCCcCCEeCh------------hhhccCCCCCEEECCCCcCCeeCHHHhcCC
Confidence 3567777777776532 3567777777777763111 011111223445566666666544443222
Q ss_pred CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcce
Q psy12210 82 GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQIS 161 (405)
Q Consensus 82 ~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~ 161 (405)
. .++++++++|.++++|..++++++.|++++|.++.+++..|.++++|+.|++++|.+.
T Consensus 100 ~---------------------~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 158 (330)
T 1xku_A 100 V---------------------KLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK 158 (330)
T ss_dssp T---------------------TCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCC
T ss_pred C---------------------CCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCC
Confidence 1 1388899999998888888888999999999999888888888999999999999886
Q ss_pred e--ecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCC
Q psy12210 162 K--VAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHI 239 (405)
Q Consensus 162 ~--~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 239 (405)
. +.+..|.++++|++|++++|.++.++...+ ++|+.|++++|.+.
T Consensus 159 ~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~l~------------------------------ 205 (330)
T 1xku_A 159 SSGIENGAFQGMKKLSYIRIADTNITTIPQGLP---PSLTELHLDGNKIT------------------------------ 205 (330)
T ss_dssp GGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC---TTCSEEECTTSCCC------------------------------
T ss_pred ccCcChhhccCCCCcCEEECCCCccccCCcccc---ccCCEEECCCCcCC------------------------------
Confidence 4 556778888899999999999888886543 78888988888743
Q ss_pred CCCcccccCCCcccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCC
Q psy12210 240 KGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPIL 319 (405)
Q Consensus 240 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~ 319 (405)
.+....+... .+|+.|++++|.++.++..
T Consensus 206 ------~~~~~~~~~l---------------------------------------------~~L~~L~Ls~n~l~~~~~~ 234 (330)
T 1xku_A 206 ------KVDAASLKGL---------------------------------------------NNLAKLGLSFNSISAVDNG 234 (330)
T ss_dssp ------EECTGGGTTC---------------------------------------------TTCCEEECCSSCCCEECTT
T ss_pred ------ccCHHHhcCC---------------------------------------------CCCCEEECCCCcCceeChh
Confidence 2222222111 1588888888888887654
Q ss_pred C---CCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCC------ccCceeecccCCC
Q psy12210 320 L---PEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANY------KRLRRIRLEQNDI 388 (405)
Q Consensus 320 ~---~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l------~~L~~L~L~~N~l 388 (405)
. .+++++|+++ |++..++ ..+..+++ +.|++++|+|+.+++..|... +.|+.|++++|.+
T Consensus 235 ~~~~l~~L~~L~L~~N~l~~lp---------~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 235 SLANTPHLRELHLNNNKLVKVP---------GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp TGGGSTTCCEEECCSSCCSSCC---------TTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred hccCCCCCCEEECCCCcCccCC---------hhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcc
Confidence 3 3678888888 8888776 56778888 888888888888888777543 6788888888887
Q ss_pred cc--cChhhcCCCccccC
Q psy12210 389 TE--LPPKAFANYKRLRR 404 (405)
Q Consensus 389 ~~--i~~~~f~~l~~L~~ 404 (405)
.. +++..|..+.+++.
T Consensus 306 ~~~~i~~~~f~~~~~l~~ 323 (330)
T 1xku_A 306 QYWEIQPSTFRCVYVRAA 323 (330)
T ss_dssp CGGGSCGGGGTTCCCGGG
T ss_pred cccccCccccccccceeE
Confidence 64 66677887777764
No 15
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=3e-26 Score=234.11 Aligned_cols=162 Identities=16% Similarity=0.201 Sum_probs=88.0
Q ss_pred ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210 2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS 81 (405)
Q Consensus 2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~ 81 (405)
.|+|++|+|+++++.+|+++++|++|++++|.+++..+-.+ ......+.+++++|.+..++...|...
T Consensus 29 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~------------~~l~~L~~L~L~~n~l~~l~~~~~~~l 96 (680)
T 1ziw_A 29 VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELC------------QKLPMLKVLNLQHNELSQLSDKTFAFC 96 (680)
T ss_dssp EEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHH------------HHCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred EEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHH------------hcccCcCEEECCCCccCccChhhhccC
Confidence 57888999999888888899999999999988875322111 111223556777777777776554322
Q ss_pred CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCCC-C--CCCccEEEccCCCCCCCCcccccCCCCCcEEecCCC
Q psy12210 82 GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPIL-L--PEATTELRLEQNDITELPPKAFANYKRLRRIDLSKN 158 (405)
Q Consensus 82 ~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~~-~--~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n 158 (405)
.. ++++++++|.++.+|.. + .++|++|++++|.++.+++..+.++++|++|++++|
T Consensus 97 ~~---------------------L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 155 (680)
T 1ziw_A 97 TN---------------------LTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN 155 (680)
T ss_dssp TT---------------------CSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSS
T ss_pred CC---------------------CCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCC
Confidence 11 14455555555444421 1 134455555555555444444444555555555555
Q ss_pred cceeecccccC--CCCCCCEEEccCCcCcccChhhhhccc
Q psy12210 159 QISKVAVDAFQ--GLKSLTSLTLNNNNLTYLPDGVFAELF 196 (405)
Q Consensus 159 ~l~~~~~~~~~--~l~~L~~L~l~~n~l~~l~~~~f~~l~ 196 (405)
.++.+.+..+. .+++|+.|++++|.++.+++..|..++
T Consensus 156 ~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~ 195 (680)
T 1ziw_A 156 KIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIG 195 (680)
T ss_dssp CCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSS
T ss_pred cccccCHHHhhccccccccEEECCCCcccccChhhhhhhh
Confidence 44444433322 234444444444444444444444333
No 16
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=2.4e-26 Score=234.76 Aligned_cols=351 Identities=17% Similarity=0.152 Sum_probs=193.8
Q ss_pred ccccCCCcCccCCchhhccccc--cceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccc
Q psy12210 2 PRTLNNNNLTYLPDGVFAELFR--LRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFK 79 (405)
Q Consensus 2 ~L~l~~n~i~~l~~~~f~~l~~--L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~ 79 (405)
.|++++|+++++.+.+|.+++. |+.|++++|.+++..+ .........+.+++++|.+..+....|.
T Consensus 226 ~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 293 (680)
T 1ziw_A 226 NLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGN------------DSFAWLPQLEYFFLEYNNIQHLFSHSLH 293 (680)
T ss_dssp EEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECT------------TTTTTCTTCCEEECCSCCBSEECTTTTT
T ss_pred EEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCc------------ccccCcccccEeeCCCCccCccChhhhc
Confidence 4677888888877777777755 8888888887764221 1111112234456666666665544432
Q ss_pred cCC-CCCCCCCCCCCC-----CCCC-----CCcccc-CceEEcCCCCccccCCCC---CCCccEEEccCCCC--CCCCcc
Q psy12210 80 CSG-PVEKPTGECAAE-----PSCP-----HPCRCA-DGIVDCREKGLNKVPILL---PEATTELRLEQNDI--TELPPK 142 (405)
Q Consensus 80 ~~~-~~~~~~~~~~~~-----~~~p-----~~~~c~-~~~l~~~~n~l~~lp~~~---~~~L~~L~L~~n~i--~~l~~~ 142 (405)
... .....+..+... ...| ....|. ++.+++++|.++.++... .++++.|++++|.+ ..++..
T Consensus 294 ~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~ 373 (680)
T 1ziw_A 294 GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNE 373 (680)
T ss_dssp TCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTT
T ss_pred CCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchh
Confidence 221 111111111000 0111 111222 366666666666655432 14566666666552 233333
Q ss_pred cccCC--CCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCc-ccChhhhhcccCCcEEEeecCccccccCchHHHH
Q psy12210 143 AFANY--KRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLT-YLPDGVFAELFRLRTLRISENSFICDCHLSWLHR 219 (405)
Q Consensus 143 ~~~~l--~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~ 219 (405)
.|..+ .+|+.|++++|.++.+.+.+|.++++|+.|++++|.++ .++...|..+++|+.|++++|.+...
T Consensus 374 ~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-------- 445 (680)
T 1ziw_A 374 TFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQL-------- 445 (680)
T ss_dssp TTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEEC--------
T ss_pred hhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCccee--------
Confidence 33322 35666666666666666666666666666666666665 34445566666666666666654311
Q ss_pred HHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q psy12210 220 WLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPC 299 (405)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 299 (405)
.+..+.....+....+.++.+..+... -..+..........++++.++.+....+....
T Consensus 446 ----~~~~~~~~~~L~~L~l~~n~l~~~~~~------------p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~----- 504 (680)
T 1ziw_A 446 ----TRNSFALVPSLQRLMLRRVALKNVDSS------------PSPFQPLRNLTILDLSNNNIANINDDMLEGLE----- 504 (680)
T ss_dssp ----CTTTTTTCTTCCEEECTTSCCBCTTCS------------SCTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-----
T ss_pred ----ChhhhhcCcccccchhccccccccccC------------CcccccCCCCCEEECCCCCCCcCChhhhcccc-----
Confidence 000111111112222222222111000 00111122233344555566655555554444
Q ss_pred cccCceeecCCCCCCcCCCC-----------CCCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcc
Q psy12210 300 RCADGIVDCREKGLNKVPIL-----------LPEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITE 366 (405)
Q Consensus 300 ~~~l~~l~l~~n~l~~~p~~-----------~~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~ 366 (405)
+|++|++++|.++.++.. ..+.++.|+++ |+++.++ +..|.++++ +.|+|++|+|+.
T Consensus 505 --~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~--------~~~~~~l~~L~~L~Ls~N~l~~ 574 (680)
T 1ziw_A 505 --KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIP--------VEVFKDLFELKIIDLGLNNLNT 574 (680)
T ss_dssp --TCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCC--------TTTTTTCTTCCEEECCSSCCCC
T ss_pred --ccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCC--------HHHcccccCcceeECCCCCCCc
Confidence 688888888888876321 12578888888 8888888 677888888 888888888888
Q ss_pred cCcccccCCccCceeecccCCCcccChhhcC-CCcccc
Q psy12210 367 LPPKAFANYKRLRRIRLEQNDITELPPKAFA-NYKRLR 403 (405)
Q Consensus 367 i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~-~l~~L~ 403 (405)
+++..|.++++|+.|+|++|+|+++++..|. .+++|+
T Consensus 575 l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~ 612 (680)
T 1ziw_A 575 LPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLT 612 (680)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCS
T ss_pred CCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccC
Confidence 8888888888888888888888888877554 344443
No 17
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=1.6e-26 Score=224.88 Aligned_cols=291 Identities=18% Similarity=0.209 Sum_probs=199.4
Q ss_pred CCCCCccccCceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcce-eecccccCCCCCC
Q psy12210 96 SCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQIS-KVAVDAFQGLKSL 174 (405)
Q Consensus 96 ~~p~~~~c~~~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~-~~~~~~~~~l~~L 174 (405)
-||..|.|..+.++|++++++++|. +++++++|++++|.++.+++..|.++++|++|++++|.+. .+++..|.++++|
T Consensus 3 p~~~~c~~~~~~~~c~~~~l~~lp~-l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L 81 (455)
T 3v47_A 3 PGTSECSVIGYNAICINRGLHQVPE-LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSL 81 (455)
T ss_dssp ----CCEEETTEEECCSSCCSSCCC-CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTC
T ss_pred CccceeEEEccccCcCCCCcccCCC-CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccC
Confidence 4788899999999999999999999 8899999999999999998888999999999999999987 6777889999999
Q ss_pred CEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCC---------------
Q psy12210 175 TSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHI--------------- 239 (405)
Q Consensus 175 ~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l--------------- 239 (405)
++|++++|.++.+.+..|..+++|+.|++++|.+... ... .........+....+
T Consensus 82 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-----~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 151 (455)
T 3v47_A 82 IILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGA-----VLS-----GNFFKPLTSLEMLVLRDNNIKKIQPASFFL 151 (455)
T ss_dssp CEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTH-----HHH-----SSTTTTCTTCCEEECCSSBCCSCCCCGGGG
T ss_pred CEEeCCCCccCccChhhccCcccCCEEeCCCCCCCcc-----ccC-----cccccCcccCCEEECCCCccCccCcccccC
Confidence 9999999999999888899999999999999987621 000 000111122222233
Q ss_pred ----------CCCcccccCCCcccccC-cccccccccee-------------------cccccCCCCCCCCCCCCCC---
Q psy12210 240 ----------KGQNILDIPEHEFKCSG-SSMETRSKIYR-------------------EECSTDFHPYNSCPVEKPT--- 286 (405)
Q Consensus 240 ----------~~~~l~~l~~~~~~~~~-~~~~~~~~~~~-------------------~~~~~~~~~~~~~~i~~~~--- 286 (405)
.++.+..+....+.... .....+..... .........++.+.+....
T Consensus 152 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~ 231 (455)
T 3v47_A 152 NMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKR 231 (455)
T ss_dssp GCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHH
T ss_pred CCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhh
Confidence 33333333322221110 00000000000 0001111112222111000
Q ss_pred --------------------------CCCCC---CCCCCCCccccCceeecCCCCCCcCCCCC---CCCceEEEEE-ecc
Q psy12210 287 --------------------------GECAA---EPSCPHPCRCADGIVDCREKGLNKVPILL---PEATTELTYM-VSI 333 (405)
Q Consensus 287 --------------------------~~~~~---~~~~~~~~~~~l~~l~l~~n~l~~~p~~~---~~~l~~L~l~-n~i 333 (405)
...+. ..........+++.+++++|.++.+++.. .+++++|+++ |++
T Consensus 232 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 311 (455)
T 3v47_A 232 FFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEI 311 (455)
T ss_dssp HHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred hhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcc
Confidence 00000 00000001136888888888888775443 3689999999 999
Q ss_pred eeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcccChhhcCCCccccCC
Q psy12210 334 DRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405 (405)
Q Consensus 334 ~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L 405 (405)
.+++ +..|.++++ +.|+|++|+|+.+++..|.++++|+.|+|++|+++++++..|.++++|++|
T Consensus 312 ~~~~--------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 376 (455)
T 3v47_A 312 NKID--------DNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKEL 376 (455)
T ss_dssp CEEC--------TTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred cccC--------hhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEE
Confidence 9988 788999999 999999999999988889999999999999999999988889998888764
No 18
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.95 E-value=9.7e-27 Score=234.57 Aligned_cols=174 Identities=21% Similarity=0.207 Sum_probs=124.7
Q ss_pred ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210 2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS 81 (405)
Q Consensus 2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~ 81 (405)
.|+|++|+|+++++.+|+++++|++|++++|.+++.. +.........+.+++++|.++.+....|...
T Consensus 36 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~------------~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l 103 (606)
T 3vq2_A 36 NIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIE------------DKAWHGLHHLSNLILTGNPIQSFSPGSFSGL 103 (606)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC------------TTTTTTCTTCCEEECTTCCCCCCCTTSSTTC
T ss_pred EEECCCCCcCEeChhhccCCccCcEEeCCCCcccccC------------HHHhhchhhcCEeECCCCcccccChhhcCCc
Confidence 5788888888888888888888888888888876321 1111222334556777777777654444222
Q ss_pred CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCC-CC--CCCccEEEccCCCCCCCC-cccccCCCCCcEEecCC
Q psy12210 82 GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPI-LL--PEATTELRLEQNDITELP-PKAFANYKRLRRIDLSK 157 (405)
Q Consensus 82 ~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~-~~--~~~L~~L~L~~n~i~~l~-~~~~~~l~~L~~L~ls~ 157 (405)
. .++++++++|.++.+|. .+ .++|++|++++|.++.+. +..|+++++|+.|++++
T Consensus 104 ~---------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~ 162 (606)
T 3vq2_A 104 T---------------------SLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY 162 (606)
T ss_dssp T---------------------TCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCS
T ss_pred c---------------------cCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccC
Confidence 1 13888888888888773 33 367888888888888643 45688888888888888
Q ss_pred CcceeecccccCCCCCCC----EEEccCCcCcccChhhhhcccCCcEEEeecCccc
Q psy12210 158 NQISKVAVDAFQGLKSLT----SLTLNNNNLTYLPDGVFAELFRLRTLRISENSFI 209 (405)
Q Consensus 158 n~l~~~~~~~~~~l~~L~----~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~ 209 (405)
|.++.+.+..|..+.+|+ .|++++|.++.+++..|... +|+.|++++|.+.
T Consensus 163 n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~ 217 (606)
T 3vq2_A 163 NYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNS 217 (606)
T ss_dssp SCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSC
T ss_pred CcceecChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccc
Confidence 888888777777666554 78888888888888777654 7888888888653
No 19
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.94 E-value=1.3e-26 Score=234.54 Aligned_cols=355 Identities=15% Similarity=0.150 Sum_probs=208.0
Q ss_pred ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210 2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS 81 (405)
Q Consensus 2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~ 81 (405)
.|||++|+|+++++.+|.++++|++|+|++|+|++..+ ........++.+++++|+++.++...|...
T Consensus 56 ~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~------------~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L 123 (635)
T 4g8a_A 56 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED------------GAYQSLSHLSTLILTGNPIQSLALGAFSGL 123 (635)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT------------TTTTTCTTCCEEECTTCCCCEECGGGGTTC
T ss_pred EEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcCh------------hHhcCCCCCCEEEccCCcCCCCCHHHhcCC
Confidence 68999999999999999999999999999999873211 111222335567778888888777666433
Q ss_pred CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCCCC---CCCccEEEccCCCCCCCC-cccccCCCCCcEEecCC
Q psy12210 82 GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILL---PEATTELRLEQNDITELP-PKAFANYKRLRRIDLSK 157 (405)
Q Consensus 82 ~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~~~---~~~L~~L~L~~n~i~~l~-~~~~~~l~~L~~L~ls~ 157 (405)
.. ++++++++|+++.+|... .++|++|++++|.++.++ +..+..+++|++|++++
T Consensus 124 ~~---------------------L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~ 182 (635)
T 4g8a_A 124 SS---------------------LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 182 (635)
T ss_dssp TT---------------------CCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS
T ss_pred CC---------------------CCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccC
Confidence 22 278888888888877542 257888888888887654 34567788888888888
Q ss_pred CcceeecccccCCCCCC----CEEEccCCcCcccChhhhhcccCCcEEEeecCc--------------------------
Q psy12210 158 NQISKVAVDAFQGLKSL----TSLTLNNNNLTYLPDGVFAELFRLRTLRISENS-------------------------- 207 (405)
Q Consensus 158 n~l~~~~~~~~~~l~~L----~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~-------------------------- 207 (405)
|.++.+.+..|..+.++ ..++++.|.+..++++.+.. ..++.+++.+|.
T Consensus 183 N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~-~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~ 261 (635)
T 4g8a_A 183 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 261 (635)
T ss_dssp SCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECC
T ss_pred ccccccccccccchhhhhhhhhhhhcccCcccccCcccccc-hhhhhhhhhcccccccccchhhcCCccccccccccccc
Confidence 88887776666544333 24556666655554433321 122223332221
Q ss_pred ------------------------------------------------------------------------------cc
Q psy12210 208 ------------------------------------------------------------------------------FI 209 (405)
Q Consensus 208 ------------------------------------------------------------------------------l~ 209 (405)
+.
T Consensus 262 ~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 341 (635)
T 4g8a_A 262 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFG 341 (635)
T ss_dssp TTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEES
T ss_pred ccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhccccccc
Confidence 10
Q ss_pred cccC--chHHHHH-H----hhcCCCCCccccCCCCCCCCCcccccCCC-------------------------ccccc-C
Q psy12210 210 CDCH--LSWLHRW-L----KRYPRLGLYTKCFAPSHIKGQNILDIPEH-------------------------EFKCS-G 256 (405)
Q Consensus 210 ~~~~--l~~~~~~-~----~~~~~~~~~~~~~~~~~l~~~~l~~l~~~-------------------------~~~~~-~ 256 (405)
.... +..+... + ............+....+..+.+...... .+... .
T Consensus 342 ~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~ 421 (635)
T 4g8a_A 342 QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQ 421 (635)
T ss_dssp SCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTT
T ss_pred CcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccccccccccccccccc
Confidence 0000 0000000 0 00000000111122222333222211100 00000 0
Q ss_pred cccccc--c--------cceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCC-cC-CCCC--CC
Q psy12210 257 SSMETR--S--------KIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLN-KV-PILL--PE 322 (405)
Q Consensus 257 ~~~~~~--~--------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~-~~-p~~~--~~ 322 (405)
.....+ . ..+..........++.+.+.......+... ..++.+++++|.+. .+ |..+ .+
T Consensus 422 L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~-------~~L~~L~Ls~N~~~~~~~~~~~~~l~ 494 (635)
T 4g8a_A 422 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL-------SSLEVLKMAGNSFQENFLPDIFTELR 494 (635)
T ss_dssp CCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTC-------TTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred ccchhhhhccccccccccccccccccccccccccccccccccccccc-------hhhhhhhhhhcccccccCchhhhhcc
Confidence 000000 0 001111111112222333333333333332 37889999998743 33 3332 36
Q ss_pred CceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcccChhhcCCC-
Q psy12210 323 ATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANY- 399 (405)
Q Consensus 323 ~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l- 399 (405)
+++.|+++ |++++++ +..|+++++ +.|+|++|+|+.+++..|.++++|+.|+|++|+|+++++.+|.++
T Consensus 495 ~L~~L~Ls~N~L~~l~--------~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~ 566 (635)
T 4g8a_A 495 NLTFLDLSQCQLEQLS--------PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP 566 (635)
T ss_dssp TCCEEECTTSCCCEEC--------TTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCC
T ss_pred ccCEEECCCCccCCcC--------hHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhh
Confidence 89999999 9999998 889999999 999999999999999999999999999999999999999888877
Q ss_pred ccccCC
Q psy12210 400 KRLRRM 405 (405)
Q Consensus 400 ~~L~~L 405 (405)
++|++|
T Consensus 567 ~~L~~L 572 (635)
T 4g8a_A 567 SSLAFL 572 (635)
T ss_dssp TTCCEE
T ss_pred CcCCEE
Confidence 567653
No 20
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.94 E-value=1.4e-26 Score=217.55 Aligned_cols=241 Identities=21% Similarity=0.331 Sum_probs=173.1
Q ss_pred CCCCC-ccccCceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcce-eecccccCCCCC
Q psy12210 96 SCPHP-CRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQIS-KVAVDAFQGLKS 173 (405)
Q Consensus 96 ~~p~~-~~c~~~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~-~~~~~~~~~l~~ 173 (405)
+||+. |+|..+.++|++++++++|..++++++.|+|++|+|+.+++++|.++++|++|+|++|.+. .+++.+|.++++
T Consensus 1 gCp~~~C~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~ 80 (350)
T 4ay9_X 1 GCHHRICHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 80 (350)
T ss_dssp -CCCSSSEEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTT
T ss_pred CCCCCccEeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchh
Confidence 59865 9999999999999999999999999999999999999999999999999999999999985 567778999999
Q ss_pred CCE-EEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCC-CCCcccccCCCc
Q psy12210 174 LTS-LTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHI-KGQNILDIPEHE 251 (405)
Q Consensus 174 L~~-L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~l~~l~~~~ 251 (405)
+.+ +.+..|+++.+++++|..+++|+.|++++|.+.... +..+..........+ ....+..++...
T Consensus 81 l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~------------~~~~~~~~~l~~l~l~~~~~i~~l~~~~ 148 (350)
T 4ay9_X 81 LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLP------------DVHKIHSLQKVLLDIQDNINIHTIERNS 148 (350)
T ss_dssp CCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCC------------CCTTCCBSSCEEEEEESCTTCCEECTTS
T ss_pred hhhhhcccCCcccccCchhhhhccccccccccccccccCC------------chhhcccchhhhhhhccccccccccccc
Confidence 886 556779999999999999999999999999865110 000000000000000 001111122111
Q ss_pred ccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCCCC--CceEEEE
Q psy12210 252 FKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPE--ATTELTY 329 (405)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~~~--~l~~L~l 329 (405)
+... ...++.|++++|+|+.+|..++. .+++|++
T Consensus 149 --------------------------------------f~~~------~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l 184 (350)
T 4ay9_X 149 --------------------------------------FVGL------SFESVILWLNKNGIQEIHNSAFNGTQLDELNL 184 (350)
T ss_dssp --------------------------------------STTS------BSSCEEEECCSSCCCEECTTSSTTEEEEEEEC
T ss_pred --------------------------------------hhhc------chhhhhhccccccccCCChhhccccchhHHhh
Confidence 1111 11477788888888888877663 5667777
Q ss_pred E--ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcccChhhcCCCccccC
Q psy12210 330 M--VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404 (405)
Q Consensus 330 ~--n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~ 404 (405)
. |.++.++ .+.|+++++ +.|+|++|+|+.+++..|.++++|+.+++ +.++.+|+ +.++++|+.
T Consensus 185 ~~~n~l~~i~--------~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~--~~l~~lP~--l~~l~~L~~ 250 (350)
T 4ay9_X 185 SDNNNLEELP--------NDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLPT--LEKLVALME 250 (350)
T ss_dssp TTCTTCCCCC--------TTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTC--TTCCCCCC--TTTCCSCCE
T ss_pred ccCCcccCCC--------HHHhccCcccchhhcCCCCcCccChhhhccchHhhhccC--CCcCcCCC--chhCcChhh
Confidence 5 7788887 677888888 88888888888888777766666555444 34677764 555555543
No 21
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.94 E-value=7.2e-27 Score=207.53 Aligned_cols=214 Identities=24% Similarity=0.434 Sum_probs=185.4
Q ss_pred CCCCCCccccC---ceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCc-ceeecccccCC
Q psy12210 95 PSCPHPCRCAD---GIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQ-ISKVAVDAFQG 170 (405)
Q Consensus 95 ~~~p~~~~c~~---~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~-l~~~~~~~~~~ 170 (405)
+.||..|.|.. ..++|.+ ++++|. ++.+++.|++++|.++.+++..|.++++|+.|++++|. ++.+++..|.+
T Consensus 2 ~~cp~~C~C~~~~~~~v~c~~--l~~ip~-~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~ 78 (239)
T 2xwt_C 2 GCSSPPCECHQEEDFRVTCKD--IQRIPS-LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYN 78 (239)
T ss_dssp -CCSSSCSEEECSTTEEEECS--CSSCCC-CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEES
T ss_pred CCCCCCCeeCCCCcceeEccC--ccccCC-CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCC
Confidence 57999999965 4455766 999999 88999999999999999999889999999999999997 99999889999
Q ss_pred CCCCCEEEccC-CcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCC
Q psy12210 171 LKSLTSLTLNN-NNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPE 249 (405)
Q Consensus 171 l~~L~~L~l~~-n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~ 249 (405)
+++|++|++++ |.++.+++.+|..+++|+.|++++|.+. .++.
T Consensus 79 l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~------------------------------------~lp~ 122 (239)
T 2xwt_C 79 LSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK------------------------------------MFPD 122 (239)
T ss_dssp CTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCC------------------------------------SCCC
T ss_pred CcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCc------------------------------------cccc
Confidence 99999999999 9999999999999999999999999854 1221
Q ss_pred CcccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCc---eeecCCC-CCCcCCCCCC---C
Q psy12210 250 HEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADG---IVDCREK-GLNKVPILLP---E 322 (405)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~---~l~l~~n-~l~~~p~~~~---~ 322 (405)
+... .+++ +|++++| .++.+|...+ +
T Consensus 123 --~~~l---------------------------------------------~~L~~L~~L~l~~N~~l~~i~~~~~~~l~ 155 (239)
T 2xwt_C 123 --LTKV---------------------------------------------YSTDIFFILEITDNPYMTSIPVNAFQGLC 155 (239)
T ss_dssp --CTTC---------------------------------------------CBCCSEEEEEEESCTTCCEECTTTTTTTB
T ss_pred --cccc---------------------------------------------cccccccEEECCCCcchhhcCcccccchh
Confidence 1111 0355 9999999 9999987654 5
Q ss_pred Cce-EEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCC-CcccCcccccCC-ccCceeecccCCCcccChhhcC
Q psy12210 323 ATT-ELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQND-ITELPPKAFANY-KRLRRIRLEQNDITELPPKAFA 397 (405)
Q Consensus 323 ~l~-~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~-i~~i~~~~~~~l-~~L~~L~L~~N~l~~i~~~~f~ 397 (405)
.++ .|+++ |+++.++ ...|.. ++ +.|+|++|+ ++.+++..|.++ ++|+.|++++|++++++...|.
T Consensus 156 ~L~~~L~l~~n~l~~i~--------~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~ 226 (239)
T 2xwt_C 156 NETLTLKLYNNGFTSVQ--------GYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLE 226 (239)
T ss_dssp SSEEEEECCSCCCCEEC--------TTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCT
T ss_pred cceeEEEcCCCCCcccC--------HhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChhHhc
Confidence 788 99999 9999998 667777 78 999999995 999999999999 9999999999999999988888
Q ss_pred CCcccc
Q psy12210 398 NYKRLR 403 (405)
Q Consensus 398 ~l~~L~ 403 (405)
+++.|.
T Consensus 227 ~L~~L~ 232 (239)
T 2xwt_C 227 HLKELI 232 (239)
T ss_dssp TCSEEE
T ss_pred cCceee
Confidence 888775
No 22
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.94 E-value=3e-26 Score=230.97 Aligned_cols=362 Identities=10% Similarity=0.023 Sum_probs=202.4
Q ss_pred CccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCcccc
Q psy12210 1 MPRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKC 80 (405)
Q Consensus 1 ~~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~ 80 (405)
..|+|++|+|+++++.+|.++++|++|++++|.+++.. +.........+.+++++|.+..++...+..
T Consensus 59 ~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~------------p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 126 (606)
T 3vq2_A 59 QWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS------------PGSFSGLTSLENLVAVETKLASLESFPIGQ 126 (606)
T ss_dssp CEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCC------------TTSSTTCTTCCEEECTTSCCCCSSSSCCTT
T ss_pred cEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccC------------hhhcCCcccCCEEEccCCccccccccccCC
Confidence 36899999999999999999999999999999987421 222223334566778888888777554433
Q ss_pred C-CCCCCCCCCCCCCC-C-CCCCcccc-CceEEcCCCCccccCCCCC-------CCccEEEccCCCCCCCCcccccCCCC
Q psy12210 81 S-GPVEKPTGECAAEP-S-CPHPCRCA-DGIVDCREKGLNKVPILLP-------EATTELRLEQNDITELPPKAFANYKR 149 (405)
Q Consensus 81 ~-~~~~~~~~~~~~~~-~-~p~~~~c~-~~~l~~~~n~l~~lp~~~~-------~~L~~L~L~~n~i~~l~~~~~~~l~~ 149 (405)
. ......+..+.... . ......+. ++.+++++|.++.++.... ..+..|++++|.++.+++..+... +
T Consensus 127 l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~ 205 (606)
T 3vq2_A 127 LITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-K 205 (606)
T ss_dssp CTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-E
T ss_pred CCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCc-e
Confidence 2 33334444444332 1 22233443 4888999988888765422 224588999888888776655433 5
Q ss_pred CcEEecCCCcce--------------------------------------------------------------------
Q psy12210 150 LRRIDLSKNQIS-------------------------------------------------------------------- 161 (405)
Q Consensus 150 L~~L~ls~n~l~-------------------------------------------------------------------- 161 (405)
|+.|++++|.+.
T Consensus 206 L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~ 285 (606)
T 3vq2_A 206 LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLA 285 (606)
T ss_dssp EEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGT
T ss_pred eeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCC
Confidence 555555555432
Q ss_pred -------------eecccccCCCCCCCEEEccCCcCcccChh-------------------hhhcccCCcEEEeecCccc
Q psy12210 162 -------------KVAVDAFQGLKSLTSLTLNNNNLTYLPDG-------------------VFAELFRLRTLRISENSFI 209 (405)
Q Consensus 162 -------------~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-------------------~f~~l~~L~~L~l~~N~l~ 209 (405)
.++ .+..+++|++|++++|.+..++.- .+..+++|+.|++++|.+.
T Consensus 286 ~L~~L~l~~~~~~~l~--~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~ 363 (606)
T 3vq2_A 286 NVSAMSLAGVSIKYLE--DVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALS 363 (606)
T ss_dssp TCSEEEEESCCCCCCC--CCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEE
T ss_pred CCCEEEecCccchhhh--hccccccCCEEEcccccCcccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccC
Confidence 221 344455566666666666555420 1223334444444444433
Q ss_pred cccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccC-ccccccc----------cceecccccCCCCCC
Q psy12210 210 CDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSG-SSMETRS----------KIYREECSTDFHPYN 278 (405)
Q Consensus 210 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~-~~~~~~~----------~~~~~~~~~~~~~~~ 278 (405)
..-.. ..... ....+....+.++.+..++. .+.... .....+. ..+..........++
T Consensus 364 ~~~~~---~~~~~-------~~~~L~~L~L~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 432 (606)
T 3vq2_A 364 FSGCC---SYSDL-------GTNSLRHLDLSFNGAIIMSA-NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDIS 432 (606)
T ss_dssp EEEEC---CHHHH-------CCSCCCEEECCSCSEEEECC-CCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECT
T ss_pred CCcch---hhhhc-------cCCcccEeECCCCccccchh-hccCCCCCCeeECCCCccCCccChhhhhccccCCEEECc
Confidence 11000 00000 11112222333333333221 111000 0000000 011112223333444
Q ss_pred CCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCc--CCCCC--CCCceEEEEE-ecceeeeccchhccccccccCCc
Q psy12210 279 SCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNK--VPILL--PEATTELTYM-VSIDRVDKVLLYSYISNNFKRWT 353 (405)
Q Consensus 279 ~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~--~p~~~--~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~ 353 (405)
.+.+.......+.... +|++|++++|.++. +|..+ .++|+.|+++ |++.+++ +..|++++
T Consensus 433 ~n~l~~~~~~~~~~l~-------~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--------~~~~~~l~ 497 (606)
T 3vq2_A 433 YTNTKIDFDGIFLGLT-------SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQIS--------WGVFDTLH 497 (606)
T ss_dssp TSCCEECCTTTTTTCT-------TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC--------TTTTTTCT
T ss_pred CCCCCccchhhhcCCC-------CCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccC--------hhhhcccc
Confidence 5555544444443333 67778888777775 34333 3677788888 7777776 67777788
Q ss_pred c-ceEEecCCCCcccCcccccCCccCceeecccCCCcccChhhcCCCc-cccC
Q psy12210 354 N-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYK-RLRR 404 (405)
Q Consensus 354 ~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~-~L~~ 404 (405)
+ +.|+|++|+++.+.+..|.++++|+.|+|++|++++++.. |..+. +|++
T Consensus 498 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~-~~~l~~~L~~ 549 (606)
T 3vq2_A 498 RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI-LQHFPKSLAF 549 (606)
T ss_dssp TCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESC-GGGSCTTCCE
T ss_pred cCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHh-HhhhcccCcE
Confidence 8 8888888888887777777788888888888888877765 55553 3443
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=9.6e-26 Score=225.26 Aligned_cols=153 Identities=19% Similarity=0.176 Sum_probs=111.0
Q ss_pred ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210 2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS 81 (405)
Q Consensus 2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~ 81 (405)
++++++|+++++|... .++|+.|++++|.+++..+ .........+.+++++|.++.++...|...
T Consensus 35 ~l~ls~~~L~~ip~~~---~~~L~~L~Ls~N~i~~~~~------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 99 (562)
T 3a79_B 35 MVDYSNRNLTHVPKDL---PPRTKALSLSQNSISELRM------------PDISFLSELRVLRLSHNRIRSLDFHVFLFN 99 (562)
T ss_dssp EEECTTSCCCSCCTTS---CTTCCEEECCSSCCCCCCG------------GGTTTCTTCCEEECCSCCCCEECTTTTTTC
T ss_pred EEEcCCCCCccCCCCC---CCCcCEEECCCCCccccCh------------hhhccCCCccEEECCCCCCCcCCHHHhCCC
Confidence 5788999999988754 2788999999999874221 111122234567788888888876665433
Q ss_pred CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCCCCCCCccEEEccCCCCCCCC-cccccCCCCCcEEecCCCcc
Q psy12210 82 GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELP-PKAFANYKRLRRIDLSKNQI 160 (405)
Q Consensus 82 ~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~-~~~~~~l~~L~~L~ls~n~l 160 (405)
.. ++++++++|.++++|..-.++|++|++++|.++.++ +..|+++++|+.|++++|.+
T Consensus 100 ~~---------------------L~~L~Ls~N~l~~lp~~~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l 158 (562)
T 3a79_B 100 QD---------------------LEYLDVSHNRLQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF 158 (562)
T ss_dssp TT---------------------CCEEECTTSCCCEECSCCCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBC
T ss_pred CC---------------------CCEEECCCCcCCccCccccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcc
Confidence 22 389999999999999776678999999999999876 35789999999999999988
Q ss_pred eeecccccCCCCCC--CEEEccCCcC--cccChhhhh
Q psy12210 161 SKVAVDAFQGLKSL--TSLTLNNNNL--TYLPDGVFA 193 (405)
Q Consensus 161 ~~~~~~~~~~l~~L--~~L~l~~n~l--~~l~~~~f~ 193 (405)
+.. .+.++++| +.|++++|.+ +...+..|.
T Consensus 159 ~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~ 192 (562)
T 3a79_B 159 RQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQ 192 (562)
T ss_dssp CTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEE
T ss_pred ccC---chhhhhhceeeEEEeecccccccccCccccc
Confidence 764 35555555 8889988887 544443443
No 24
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=2.7e-26 Score=218.86 Aligned_cols=268 Identities=18% Similarity=0.236 Sum_probs=189.3
Q ss_pred ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210 2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS 81 (405)
Q Consensus 2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~ 81 (405)
.|++++|.++.+++..|.++++|++|++++|.++ .++...|...
T Consensus 49 ~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~------------------------------------~~~~~~~~~l 92 (390)
T 3o6n_A 49 IVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE------------------------------------EIDTYAFAYA 92 (390)
T ss_dssp EEEEESCEESEECTHHHHHCCCCSEEECTTSCCC------------------------------------EECTTTTTTC
T ss_pred EEEecCCchhhCChhHhcccccCcEEECCCCccc------------------------------------ccChhhccCC
Confidence 3566677777777766677777777777777664 3332222111
Q ss_pred CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCCCC---CCCccEEEccCCCCCCCCcccccCCCCCcEEecCCC
Q psy12210 82 GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILL---PEATTELRLEQNDITELPPKAFANYKRLRRIDLSKN 158 (405)
Q Consensus 82 ~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~~~---~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n 158 (405)
. .++.+++++|.++.+|... .++|++|++++|.++.+++..|.++++|++|++++|
T Consensus 93 ~---------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n 151 (390)
T 3o6n_A 93 H---------------------TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN 151 (390)
T ss_dssp T---------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred C---------------------CcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCC
Confidence 1 1277788888887776542 357888888888888888877788888888888888
Q ss_pred cceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCC
Q psy12210 159 QISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSH 238 (405)
Q Consensus 159 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 238 (405)
.++.+.+..|.++++|++|++++|.++.++ +..+++|+.+++++|.+.... .........
T Consensus 152 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~~~-----------------~~~~L~~L~ 211 (390)
T 3o6n_A 152 NLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLA-----------------IPIAVEELD 211 (390)
T ss_dssp CCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCSEEE-----------------CCSSCSEEE
T ss_pred ccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeecccccccccC-----------------CCCcceEEE
Confidence 888888777888888888888888888875 355778888888888754100 000111111
Q ss_pred CCCCcccccCCCcccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCC
Q psy12210 239 IKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPI 318 (405)
Q Consensus 239 l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~ 318 (405)
+.++.+..+ +... ..+++.|++++|.++.++.
T Consensus 212 l~~n~l~~~--------------------------------------~~~~----------~~~L~~L~l~~n~l~~~~~ 243 (390)
T 3o6n_A 212 ASHNSINVV--------------------------------------RGPV----------NVELTILKLQHNNLTDTAW 243 (390)
T ss_dssp CCSSCCCEE--------------------------------------ECCC----------CSSCCEEECCSSCCCCCGG
T ss_pred CCCCeeeec--------------------------------------cccc----------cccccEEECCCCCCcccHH
Confidence 222222211 1110 0269999999999998752
Q ss_pred C-CCCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcccChhh
Q psy12210 319 L-LPEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKA 395 (405)
Q Consensus 319 ~-~~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~ 395 (405)
. ..+++++|+++ |.+.++. +..|.++++ +.|+|++|+++.++.. +..+++|+.|+|++|++++++..
T Consensus 244 l~~l~~L~~L~Ls~n~l~~~~--------~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~- 313 (390)
T 3o6n_A 244 LLNYPGLVEVDLSYNELEKIM--------YHPFVKMQRLERLYISNNRLVALNLY-GQPIPTLKVLDLSHNHLLHVERN- 313 (390)
T ss_dssp GGGCTTCSEEECCSSCCCEEE--------SGGGTTCSSCCEEECCSSCCCEEECS-SSCCTTCCEEECCSSCCCCCGGG-
T ss_pred HcCCCCccEEECCCCcCCCcC--------hhHccccccCCEEECCCCcCcccCcc-cCCCCCCCEEECCCCcceecCcc-
Confidence 2 24799999999 9999997 788999999 9999999999999764 57789999999999999998864
Q ss_pred cCCCccccC
Q psy12210 396 FANYKRLRR 404 (405)
Q Consensus 396 f~~l~~L~~ 404 (405)
+..+++|++
T Consensus 314 ~~~l~~L~~ 322 (390)
T 3o6n_A 314 QPQFDRLEN 322 (390)
T ss_dssp HHHHTTCSE
T ss_pred ccccCcCCE
Confidence 444555543
No 25
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=1e-26 Score=235.16 Aligned_cols=371 Identities=11% Similarity=0.094 Sum_probs=193.9
Q ss_pred ccccCCCcCccCCchhhccccccceEEccCCccc------ccchh------hH------------------------HHH
Q psy12210 2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFI------CDCHL------SW------------------------LHR 45 (405)
Q Consensus 2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~------~~~~~------~~------------------------l~~ 45 (405)
.|+|+++++++..|.+|+++++|+.|+|++|.+. +..+. .. +..
T Consensus 85 ~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~ 164 (636)
T 4eco_A 85 GLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKD 164 (636)
T ss_dssp EEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHH
T ss_pred EEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHH
Confidence 5899999999777778999999999999999762 20000 00 000
Q ss_pred HHh-----------------------------hCCCccccccccCCCcccCCcccc------------------cCCCcc
Q psy12210 46 WLK-----------------------------RYPRLGLYTKCFAPSHIKGQNILD------------------IPEHEF 78 (405)
Q Consensus 46 ~~~-----------------------------~~~~~~~~~~~~~~~~l~~~~l~~------------------l~~~~~ 78 (405)
... ..|.........+.+++++|.+.. +|....
T Consensus 165 l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~ 244 (636)
T 4eco_A 165 CINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLK 244 (636)
T ss_dssp HHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCC
T ss_pred HhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhh
Confidence 000 011111111223345566666666 555443
Q ss_pred --ccCCCCCCCCCCCCCCCCCC-CCccc-cCceEEcCCCC-ccc--cCCCCC--------CCccEEEccCCCCCCCCc-c
Q psy12210 79 --KCSGPVEKPTGECAAEPSCP-HPCRC-ADGIVDCREKG-LNK--VPILLP--------EATTELRLEQNDITELPP-K 142 (405)
Q Consensus 79 --~~~~~~~~~~~~~~~~~~~p-~~~~c-~~~~l~~~~n~-l~~--lp~~~~--------~~L~~L~L~~n~i~~l~~-~ 142 (405)
....+....+..+.....-| ..+.+ .++.+++++|+ ++. +|..+. ++|+.|++++|.++.++. +
T Consensus 245 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~ 324 (636)
T 4eco_A 245 WDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVET 324 (636)
T ss_dssp GGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHH
T ss_pred hcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchh
Confidence 33334444444444333333 23333 24777777776 653 664431 567777777777776664 2
Q ss_pred cccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccC-CcEEEeecCccccccCchHHHHHH
Q psy12210 143 AFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFR-LRTLRISENSFICDCHLSWLHRWL 221 (405)
Q Consensus 143 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~-L~~L~l~~N~l~~~~~l~~~~~~~ 221 (405)
.+.++++|+.|++++|.+++..| .|..+++|++|++++|.++.++.. +..+++ |+.|++++|.+...
T Consensus 325 ~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~-l~~l~~~L~~L~Ls~N~l~~l---------- 392 (636)
T 4eco_A 325 SLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPAN-FCGFTEQVENLSFAHNKLKYI---------- 392 (636)
T ss_dssp HHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTT-SEEECTTCCEEECCSSCCSSC----------
T ss_pred hhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHh-hhhhcccCcEEEccCCcCccc----------
Confidence 46777777777777777773333 567777777777777777766653 566777 77777777765411
Q ss_pred hhcCCCCCcc--ccCCCCCCCCCcccccCCCccc-cc-----Ccccccc----------c-cceecccccCCCCCCCCCC
Q psy12210 222 KRYPRLGLYT--KCFAPSHIKGQNILDIPEHEFK-CS-----GSSMETR----------S-KIYREECSTDFHPYNSCPV 282 (405)
Q Consensus 222 ~~~~~~~~~~--~~~~~~~l~~~~l~~l~~~~~~-~~-----~~~~~~~----------~-~~~~~~~~~~~~~~~~~~i 282 (405)
+...... ..+....+.++.+....+..+. +. ...+..+ - ..+..........++.+.+
T Consensus 393 ---p~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l 469 (636)
T 4eco_A 393 ---PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNML 469 (636)
T ss_dssp ---CSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCC
T ss_pred ---chhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCC
Confidence 0000000 0111122222333222211111 00 0000000 0 0011112223333444444
Q ss_pred CCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCCC----CCceEEEEE-ecceeeeccchhccccccccCCcc-ce
Q psy12210 283 EKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLP----EATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RS 356 (405)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~~----~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~ 356 (405)
+.++...+...........+|+.|++++|+++.+|..++ ++|+.|+++ |+++++| ..+..+++ +.
T Consensus 470 ~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip---------~~~~~l~~L~~ 540 (636)
T 4eco_A 470 TEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFP---------TQPLNSSTLKG 540 (636)
T ss_dssp SBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCC---------CGGGGCSSCCE
T ss_pred CCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcC---------hhhhcCCCCCE
Confidence 443333222110000000156777777777776665432 566777777 7776655 45666777 77
Q ss_pred EEec------CCCCcccCcccccCCccCceeecccCCCcccChhhc
Q psy12210 357 RRLE------QNDITELPPKAFANYKRLRRIRLEQNDITELPPKAF 396 (405)
Q Consensus 357 L~L~------~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f 396 (405)
|+|+ +|++....+..|..+++|+.|+|++|+++.+|...+
T Consensus 541 L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~ 586 (636)
T 4eco_A 541 FGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT 586 (636)
T ss_dssp EECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC
T ss_pred EECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHhHh
Confidence 7773 455555555556777777777777777777766544
No 26
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.94 E-value=1.7e-25 Score=208.67 Aligned_cols=281 Identities=18% Similarity=0.168 Sum_probs=202.1
Q ss_pred ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210 2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS 81 (405)
Q Consensus 2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~ 81 (405)
.+++++++++.+|... .++|+.|++++|.+++..+ .........+.++++++.+..+....|...
T Consensus 37 ~l~~~~~~l~~ip~~~---~~~l~~L~l~~n~i~~~~~------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 101 (332)
T 2ft3_A 37 VVQCSDLGLKAVPKEI---SPDTTLLDLQNNDISELRK------------DDFKGLQHLYALVLVNNKISKIHEKAFSPL 101 (332)
T ss_dssp EEECCSSCCSSCCSCC---CTTCCEEECCSSCCCEECT------------TTTTTCTTCCEEECCSSCCCEECGGGSTTC
T ss_pred EEECCCCCccccCCCC---CCCCeEEECCCCcCCccCH------------hHhhCCCCCcEEECCCCccCccCHhHhhCc
Confidence 4678888888887743 3678888998888863211 111122234556677777777655444322
Q ss_pred CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcce
Q psy12210 82 GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQIS 161 (405)
Q Consensus 82 ~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~ 161 (405)
. .++++++++|.++.+|..+++++++|++++|.++.+++..|.++++|+.|++++|.++
T Consensus 102 ~---------------------~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 160 (332)
T 2ft3_A 102 R---------------------KLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE 160 (332)
T ss_dssp T---------------------TCCEEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred C---------------------CCCEEECCCCcCCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccc
Confidence 1 1389999999999999888889999999999999999888999999999999999986
Q ss_pred e--ecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCC
Q psy12210 162 K--VAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHI 239 (405)
Q Consensus 162 ~--~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 239 (405)
. +.+..|..+ +|+.|++++|.++.++...+ ++|+.|++++|.+... .+........+....+
T Consensus 161 ~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~------------~~~~l~~l~~L~~L~L 224 (332)
T 2ft3_A 161 NSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP---ETLNELHLDHNKIQAI------------ELEDLLRYSKLYRLGL 224 (332)
T ss_dssp GGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC---SSCSCCBCCSSCCCCC------------CTTSSTTCTTCSCCBC
T ss_pred cCCCCcccccCC-ccCEEECcCCCCCccCcccc---CCCCEEECCCCcCCcc------------CHHHhcCCCCCCEEEC
Confidence 4 566777777 89999999999999887543 6899999999876510 1111122223333444
Q ss_pred CCCcccccCCCcccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCC
Q psy12210 240 KGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPIL 319 (405)
Q Consensus 240 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~ 319 (405)
.++.+..+....+ .... +|+.|++++|+++.+|..
T Consensus 225 ~~N~l~~~~~~~~--------------------------------------~~l~-------~L~~L~L~~N~l~~lp~~ 259 (332)
T 2ft3_A 225 GHNQIRMIENGSL--------------------------------------SFLP-------TLRELHLDNNKLSRVPAG 259 (332)
T ss_dssp CSSCCCCCCTTGG--------------------------------------GGCT-------TCCEEECCSSCCCBCCTT
T ss_pred CCCcCCcCChhHh--------------------------------------hCCC-------CCCEEECCCCcCeecChh
Confidence 4444444333322 2222 699999999999999876
Q ss_pred C--CCCceEEEEE-ecceeeeccchhccccccccCC------cc-ceEEecCCCCc--ccCcccccCCccCceeecccCC
Q psy12210 320 L--PEATTELTYM-VSIDRVDKVLLYSYISNNFKRW------TN-RSRRLEQNDIT--ELPPKAFANYKRLRRIRLEQND 387 (405)
Q Consensus 320 ~--~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l------~~-~~L~L~~N~i~--~i~~~~~~~l~~L~~L~L~~N~ 387 (405)
+ .+.++.|+++ |.++.++ ...|... .. +.+++++|.+. .+.+.+|..+++|+.+++++|+
T Consensus 260 l~~l~~L~~L~l~~N~l~~~~--------~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 260 LPDLKLLQVVYLHTNNITKVG--------VNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GGGCTTCCEEECCSSCCCBCC--------TTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred hhcCccCCEEECCCCCCCccC--------hhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 5 4789999999 9999998 5555543 55 89999999988 7888889999999999999984
No 27
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.94 E-value=3.3e-26 Score=236.52 Aligned_cols=194 Identities=20% Similarity=0.173 Sum_probs=109.9
Q ss_pred ccccCCCcCccCCchh---hccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCcc
Q psy12210 2 PRTLNNNNLTYLPDGV---FAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEF 78 (405)
Q Consensus 2 ~L~l~~n~i~~l~~~~---f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~ 78 (405)
.|+|++|+|++..+.. +.++++|++|++++|.+++..+.. .....+.+++++|.+........
T Consensus 155 ~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--------------~l~~L~~L~Ls~n~l~~~~~~l~ 220 (768)
T 3rgz_A 155 VLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS--------------RCVNLEFLDVSSNNFSTGIPFLG 220 (768)
T ss_dssp EEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCT--------------TCTTCCEEECCSSCCCSCCCBCT
T ss_pred EEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcc--------------cCCcCCEEECcCCcCCCCCcccc
Confidence 5889999999888876 788899999999999887543321 11122334455555444222211
Q ss_pred ccCCCCCCCCCCCCCCCCCC-CCcccc-CceEEcCCCCccc-cCCCCCCCccEEEccCCCCCCCCcccccC-CCCCcEEe
Q psy12210 79 KCSGPVEKPTGECAAEPSCP-HPCRCA-DGIVDCREKGLNK-VPILLPEATTELRLEQNDITELPPKAFAN-YKRLRRID 154 (405)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~p-~~~~c~-~~~l~~~~n~l~~-lp~~~~~~L~~L~L~~n~i~~l~~~~~~~-l~~L~~L~ 154 (405)
.........+.++.....-| ....|. ++.+++++|.++. +|....+++++|++++|.+++..+..+.+ +++|++|+
T Consensus 221 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~ 300 (768)
T 3rgz_A 221 DCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLD 300 (768)
T ss_dssp TCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEE
T ss_pred cCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEE
Confidence 11222222333332221111 122222 3667777766653 33333356666666666666332223333 36666666
Q ss_pred cCCCcceeecccccCCCCCCCEEEccCCcCc-ccChhhhhcccCCcEEEeecCccc
Q psy12210 155 LSKNQISKVAVDAFQGLKSLTSLTLNNNNLT-YLPDGVFAELFRLRTLRISENSFI 209 (405)
Q Consensus 155 ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~f~~l~~L~~L~l~~N~l~ 209 (405)
+++|.++...|..|..+++|++|++++|.++ .++.+.|..+++|+.|++++|.+.
T Consensus 301 Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~ 356 (768)
T 3rgz_A 301 LSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 356 (768)
T ss_dssp CCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEE
T ss_pred CcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccC
Confidence 6666666666666666666666666666665 555555666666666666666654
No 28
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.94 E-value=5e-25 Score=230.00 Aligned_cols=273 Identities=19% Similarity=0.178 Sum_probs=150.0
Q ss_pred ceEEcCCCCcccc-CCCC--CCCccEEEccCCCCCCCCc--ccccCCCCCcEEecCCCcceeecc-cccCCCCCCCEEEc
Q psy12210 106 GIVDCREKGLNKV-PILL--PEATTELRLEQNDITELPP--KAFANYKRLRRIDLSKNQISKVAV-DAFQGLKSLTSLTL 179 (405)
Q Consensus 106 ~~l~~~~n~l~~l-p~~~--~~~L~~L~L~~n~i~~l~~--~~~~~l~~L~~L~ls~n~l~~~~~-~~~~~l~~L~~L~l 179 (405)
+++++++|.++.+ |..+ .++|++|++++|.+++..+ ..|.++++|++|++++|.++.+.+ ..|.++++|++|++
T Consensus 76 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~L 155 (844)
T 3j0a_A 76 RILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDF 155 (844)
T ss_dssp CEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEE
T ss_pred CEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEEC
Confidence 6666666666665 3333 2466777777777765222 236667777777777777666543 35666777777777
Q ss_pred cCCcCcccChhhhhcc--cCCcEEEeecCccccccCchHHHHHHhhcCCCCCccc------cCCCCCCCCCcccccCCCc
Q psy12210 180 NNNNLTYLPDGVFAEL--FRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTK------CFAPSHIKGQNILDIPEHE 251 (405)
Q Consensus 180 ~~n~l~~l~~~~f~~l--~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~------~~~~~~l~~~~l~~l~~~~ 251 (405)
++|.++.+.+..|..+ ++|+.|++++|.+... .+....... .+....+.++.+.......
T Consensus 156 s~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~------------~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~ 223 (844)
T 3j0a_A 156 SSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSR------------VSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGN 223 (844)
T ss_dssp ESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCC------------CCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSG
T ss_pred CCCcCCeeCHHHcccccCCccceEECCCCccccc------------cccchhhcCCccccCceeEEecCCCcCchhHHHH
Confidence 7777766666666655 6677777776665421 000000000 0111122222221111111
Q ss_pred ccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCCC---CCceEEE
Q psy12210 252 FKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLP---EATTELT 328 (405)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~~---~~l~~L~ 328 (405)
+.............+. ....-..+....+.......+... +..+++.|++++|.++.++...+ ++++.|+
T Consensus 224 ~~~~l~~~~l~~L~l~--~~~~~~~~~~~~l~~~~~~~f~~l-----~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 296 (844)
T 3j0a_A 224 FSNAISKSQAFSLILA--HHIMGAGFGFHNIKDPDQNTFAGL-----ARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLN 296 (844)
T ss_dssp GGGTSCSCCBSEEECC--SSCCBCSSSCSSSTTGGGTTTTTT-----TTSCCCEEECTTCCCCEECSCCSSSCCCCCEEE
T ss_pred HHhhcCcccccceecc--cccccccccccccCCCChhhhhcc-----ccCCccEEECCCCcccccChhhhhcCCCCCEEE
Confidence 1100000000000000 000000011111222222222211 12368888888888877755443 5778888
Q ss_pred EE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcccChhhcCCCccccCC
Q psy12210 329 YM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405 (405)
Q Consensus 329 l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L 405 (405)
++ |.+..++ +..|.++++ +.|+|++|+++.+.+..|.++++|+.|+|++|+++.+++..|.++++|++|
T Consensus 297 L~~n~i~~~~--------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L 367 (844)
T 3j0a_A 297 LAYNKINKIA--------DEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTL 367 (844)
T ss_dssp EESCCCCEEC--------TTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEE
T ss_pred CCCCcCCCCC--------hHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEE
Confidence 88 8888877 677888888 888888888888877778888888888888888888887777777777654
No 29
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=2.3e-26 Score=237.55 Aligned_cols=374 Identities=11% Similarity=0.084 Sum_probs=219.0
Q ss_pred ccccCCCcCccCCchhhccccccceEEc-cCCcccccchhh-------------------H----------------HHH
Q psy12210 2 PRTLNNNNLTYLPDGVFAELFRLRTLRI-SENSFICDCHLS-------------------W----------------LHR 45 (405)
Q Consensus 2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l-~~n~~~~~~~~~-------------------~----------------l~~ 45 (405)
.|+|++|++.+..|.+|+++++|+.|+| ++|.++|..+.. + +..
T Consensus 327 ~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~ 406 (876)
T 4ecn_A 327 GLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQD 406 (876)
T ss_dssp EEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHH
T ss_pred EEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHH
Confidence 5899999999777778999999999999 899887652111 0 000
Q ss_pred HHhh-----------------------------CCCccccccccCCCcccCCcccc------------------cCCCcc
Q psy12210 46 WLKR-----------------------------YPRLGLYTKCFAPSHIKGQNILD------------------IPEHEF 78 (405)
Q Consensus 46 ~~~~-----------------------------~~~~~~~~~~~~~~~l~~~~l~~------------------l~~~~~ 78 (405)
.+.. .|...........+++++|.+.. +|....
T Consensus 407 ~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~ 486 (876)
T 4ecn_A 407 AINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELS 486 (876)
T ss_dssp HHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCC
T ss_pred HhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhh
Confidence 1110 11111111223445666676666 555442
Q ss_pred --ccCCCCCCCCCCCCCCCCCC-CCccc-cCceEEcCCCC-ccc--cCCCC---------CCCccEEEccCCCCCCCCc-
Q psy12210 79 --KCSGPVEKPTGECAAEPSCP-HPCRC-ADGIVDCREKG-LNK--VPILL---------PEATTELRLEQNDITELPP- 141 (405)
Q Consensus 79 --~~~~~~~~~~~~~~~~~~~p-~~~~c-~~~~l~~~~n~-l~~--lp~~~---------~~~L~~L~L~~n~i~~l~~- 141 (405)
....+....+..+.....-| ..+.+ .++.+++++|+ ++. +|..+ .++|+.|++++|.++.+|.
T Consensus 487 f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~ 566 (876)
T 4ecn_A 487 WSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPAS 566 (876)
T ss_dssp GGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCH
T ss_pred hccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCCh
Confidence 33334444444544333333 23333 34888888887 663 66432 1378888888888887765
Q ss_pred ccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccC-CcEEEeecCccccccCchHHHHH
Q psy12210 142 KAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFR-LRTLRISENSFICDCHLSWLHRW 220 (405)
Q Consensus 142 ~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~-L~~L~l~~N~l~~~~~l~~~~~~ 220 (405)
..|.++++|+.|++++|.++.++ .|..+++|+.|++++|.++.++.. +..+++ |+.|++++|.+...
T Consensus 567 ~~l~~L~~L~~L~Ls~N~l~~lp--~~~~L~~L~~L~Ls~N~l~~lp~~-l~~l~~~L~~L~Ls~N~L~~l--------- 634 (876)
T 4ecn_A 567 ASLQKMVKLGLLDCVHNKVRHLE--AFGTNVKLTDLKLDYNQIEEIPED-FCAFTDQVEGLGFSHNKLKYI--------- 634 (876)
T ss_dssp HHHTTCTTCCEEECTTSCCCBCC--CCCTTSEESEEECCSSCCSCCCTT-SCEECTTCCEEECCSSCCCSC---------
T ss_pred hhhhcCCCCCEEECCCCCcccch--hhcCCCcceEEECcCCccccchHH-HhhccccCCEEECcCCCCCcC---------
Confidence 35788888888888888888554 678888888888888888877654 677777 88888888876511
Q ss_pred HhhcCCCCCccc--cCCCCCCCCCcccccCCCcc------cccC--------cccccccc-ceecccccCCCCCCCCCCC
Q psy12210 221 LKRYPRLGLYTK--CFAPSHIKGQNILDIPEHEF------KCSG--------SSMETRSK-IYREECSTDFHPYNSCPVE 283 (405)
Q Consensus 221 ~~~~~~~~~~~~--~~~~~~l~~~~l~~l~~~~~------~~~~--------~~~~~~~~-~~~~~~~~~~~~~~~~~i~ 283 (405)
+....... .+....+.++.+....+... .... .....+-. .+..........++.+.+.
T Consensus 635 ----p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~ 710 (876)
T 4ecn_A 635 ----PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT 710 (876)
T ss_dssp ----CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS
T ss_pred ----chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC
Confidence 00000000 01111222222221111000 0000 00000000 0111223344455566666
Q ss_pred CCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCCC----CCceEEEEE-ecceeeeccchhccccccccCCcc-ceE
Q psy12210 284 KPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLP----EATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSR 357 (405)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~~----~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L 357 (405)
.++...+......-....+|+.|++++|+++.+|..++ ++|+.|+++ |.+.++| ..+..+++ +.|
T Consensus 711 ~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp---------~~l~~L~~L~~L 781 (876)
T 4ecn_A 711 SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFP---------TQPLNSSQLKAF 781 (876)
T ss_dssp CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCC---------CGGGGCTTCCEE
T ss_pred ccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccc---------hhhhcCCCCCEE
Confidence 55544333221000001168888888888888876543 678888888 8888876 56778888 888
Q ss_pred EecC------CCCcccCcccccCCccCceeecccCCCcccChhhcCCCc
Q psy12210 358 RLEQ------NDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYK 400 (405)
Q Consensus 358 ~L~~------N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~ 400 (405)
+|++ |++....+..|.++++|+.|+|++|++..+|...+..|+
T Consensus 782 ~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l~~~L~ 830 (876)
T 4ecn_A 782 GIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQLY 830 (876)
T ss_dssp ECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCCSSSC
T ss_pred ECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCHhhcCCCC
Confidence 8876 666666666788888888888888888888876444333
No 30
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.93 E-value=1.7e-25 Score=226.37 Aligned_cols=324 Identities=13% Similarity=0.113 Sum_probs=208.3
Q ss_pred ccccCCCcCccCCchhhccccccceEEccCCc-ccc-cchhhHHHHHHhhCCCccccccccCCCcccCCcccccCC--Cc
Q psy12210 2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENS-FIC-DCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPE--HE 77 (405)
Q Consensus 2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~-~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~--~~ 77 (405)
.|+|++|++.+..|..|+++++|++|++++|+ ++| ..+..+.. +.. .......+.+++++|.+..++. ..
T Consensus 253 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~-----L~~-~~~l~~L~~L~L~~n~l~~ip~~~~l 326 (636)
T 4eco_A 253 DVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQA-----LAD-APVGEKIQIIYIGYNNLKTFPVETSL 326 (636)
T ss_dssp EEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHH-----HHH-SGGGGTCCEEECCSSCCSSCCCHHHH
T ss_pred EEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHh-----hhc-cccCCCCCEEECCCCcCCccCchhhh
Confidence 68999999998888889999999999999998 875 33322211 100 0001224556777888877775 22
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCccc-cCceEEcCCCCccccCCCCC--CC-ccEEEccCCCCCCCCcccccCCC--CCc
Q psy12210 78 FKCSGPVEKPTGECAAEPSCPHPCRC-ADGIVDCREKGLNKVPILLP--EA-TTELRLEQNDITELPPKAFANYK--RLR 151 (405)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~p~~~~c-~~~~l~~~~n~l~~lp~~~~--~~-L~~L~L~~n~i~~l~~~~~~~l~--~L~ 151 (405)
.....+....+..+.....-|....+ .++.+++++|.++.+|..+. ++ |+.|++++|.++.++. .+..+. +|+
T Consensus 327 ~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~-~~~~~~l~~L~ 405 (636)
T 4eco_A 327 QKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPN-IFDAKSVSVMS 405 (636)
T ss_dssp TTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCS-CCCTTCSSCEE
T ss_pred ccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccch-hhhhcccCccC
Confidence 22223333334443333122233333 23777777777777776553 34 7777777777776664 344443 677
Q ss_pred EEecCCCcceeecccccC-------CCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhc
Q psy12210 152 RIDLSKNQISKVAVDAFQ-------GLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRY 224 (405)
Q Consensus 152 ~L~ls~n~l~~~~~~~~~-------~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~ 224 (405)
.|++++|.+....|..+. .+++|++|++++|.++.++...|..+++|+.|++++|.+.
T Consensus 406 ~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~--------------- 470 (636)
T 4eco_A 406 AIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT--------------- 470 (636)
T ss_dssp EEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS---------------
T ss_pred EEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC---------------
Confidence 777777777776666666 6667777777777777777777777777777777777643
Q ss_pred CCCCCccccCCCCCCCCCcccccCCCcccccCccccccccceecccccCCCCCCCCCCCCCCCCCC-CCCCCCCCccccC
Q psy12210 225 PRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECA-AEPSCPHPCRCAD 303 (405)
Q Consensus 225 ~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~l 303 (405)
.++...+..... ............++.+.++.++.... .... +|
T Consensus 471 ---------------------~i~~~~~~~~~~-------~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~-------~L 515 (636)
T 4eco_A 471 ---------------------EIPKNSLKDENE-------NFKNTYLLTSIDLRFNKLTKLSDDFRATTLP-------YL 515 (636)
T ss_dssp ---------------------BCCSSSSEETTE-------ECTTGGGCCEEECCSSCCCBCCGGGSTTTCT-------TC
T ss_pred ---------------------CcCHHHhccccc-------cccccCCccEEECcCCcCCccChhhhhccCC-------Cc
Confidence 233222211100 00000122223344444443332221 1222 69
Q ss_pred ceeecCCCCCCcCCCCC--CCCceEEEEE-------ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCccccc
Q psy12210 304 GIVDCREKGLNKVPILL--PEATTELTYM-------VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFA 373 (405)
Q Consensus 304 ~~l~l~~n~l~~~p~~~--~~~l~~L~l~-------n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~ 373 (405)
+.|++++|+++.+|..+ .+.|+.|+++ |++.+.. +..+..+++ +.|+|++|+|..+|.. +.
T Consensus 516 ~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~--------p~~l~~l~~L~~L~Ls~N~l~~ip~~-~~ 586 (636)
T 4eco_A 516 VGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREW--------PEGITLCPSLTQLQIGSNDIRKVNEK-IT 586 (636)
T ss_dssp CEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCC--------CTTGGGCSSCCEEECCSSCCCBCCSC-CC
T ss_pred CEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccC--------hHHHhcCCCCCEEECCCCcCCccCHh-Hh
Confidence 99999999999988765 3799999994 4444443 578999999 9999999999999876 33
Q ss_pred CCccCceeecccCCCcccCh
Q psy12210 374 NYKRLRRIRLEQNDITELPP 393 (405)
Q Consensus 374 ~l~~L~~L~L~~N~l~~i~~ 393 (405)
++|+.|+|++|++..+..
T Consensus 587 --~~L~~L~Ls~N~l~~~~~ 604 (636)
T 4eco_A 587 --PNISVLDIKDNPNISIDL 604 (636)
T ss_dssp --TTCCEEECCSCTTCEEEC
T ss_pred --CcCCEEECcCCCCccccH
Confidence 899999999999887763
No 31
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=4.7e-25 Score=199.47 Aligned_cols=204 Identities=28% Similarity=0.510 Sum_probs=180.9
Q ss_pred CCCccccC--ceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCC
Q psy12210 98 PHPCRCAD--GIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLT 175 (405)
Q Consensus 98 p~~~~c~~--~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~ 175 (405)
+..|.|.. +.++|++++++++|..++..++.|++++|.++.+++..|.++++|++|++++|.++.+++..|.++++|+
T Consensus 9 ~~~C~c~~~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~ 88 (270)
T 2o6q_A 9 GGVCSCNNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLE 88 (270)
T ss_dssp TCSBEEETTTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCC
T ss_pred CCCCEeCCCCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCC
Confidence 35688854 8999999999999999999999999999999999998899999999999999999999988889999999
Q ss_pred EEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCccccc
Q psy12210 176 SLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS 255 (405)
Q Consensus 176 ~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~ 255 (405)
+|++++|.++.+++..|..+++|+.|++++|.+. .++...|...
T Consensus 89 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~------------------------------------~~~~~~~~~l 132 (270)
T 2o6q_A 89 TLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK------------------------------------SLPPRVFDSL 132 (270)
T ss_dssp EEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCC------------------------------------CCCTTTTTTC
T ss_pred EEECCCCcCCcCCHhHcccccCCCEEECCCCccC------------------------------------eeCHHHhCcC
Confidence 9999999999999999999999999999998754 2222222111
Q ss_pred CccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCC---CCCceEEEEE-e
Q psy12210 256 GSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILL---PEATTELTYM-V 331 (405)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~---~~~l~~L~l~-n 331 (405)
.+|++|++++|.++.+|... .++|++|+++ |
T Consensus 133 ---------------------------------------------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 167 (270)
T 2o6q_A 133 ---------------------------------------------TKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN 167 (270)
T ss_dssp ---------------------------------------------TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred ---------------------------------------------cCCCEEECCCCcCCccCHhHccCCcccceeEecCC
Confidence 16999999999999998764 3689999999 9
Q ss_pred cceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcc
Q psy12210 332 SIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITE 390 (405)
Q Consensus 332 ~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~ 390 (405)
++..++ +..|.++++ +.|+|++|+|+.+++..|..+++|+.|+|++|.+..
T Consensus 168 ~l~~~~--------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 168 QLKRVP--------EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CCSCCC--------TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cCcEeC--------hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 999998 778999999 999999999999999999999999999999998754
No 32
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.93 E-value=2.6e-25 Score=222.43 Aligned_cols=172 Identities=22% Similarity=0.272 Sum_probs=127.6
Q ss_pred ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210 2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS 81 (405)
Q Consensus 2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~ 81 (405)
.|+|++|+|+++++.+|.++++|++|++++|.+++.. +.........+.+++++|.+..++...|...
T Consensus 32 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~------------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 99 (570)
T 2z63_A 32 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE------------DGAYQSLSHLSTLILTGNPIQSLALGAFSGL 99 (570)
T ss_dssp EEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEEC------------TTTTTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred EEEccCCccCccChhHhhCCCCceEEECCCCcCCccC------------cccccCchhCCEEeCcCCcCCccCHhhhcCc
Confidence 5889999999998888999999999999999886321 1111122334556777777777776555332
Q ss_pred CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCCC-C--CCCccEEEccCCCCCCCC-cccccCCCCCcEEecCC
Q psy12210 82 GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPIL-L--PEATTELRLEQNDITELP-PKAFANYKRLRRIDLSK 157 (405)
Q Consensus 82 ~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~~-~--~~~L~~L~L~~n~i~~l~-~~~~~~l~~L~~L~ls~ 157 (405)
.. ++++++++|+++.+|.. + .++|++|++++|.++.+. +..|+++++|+.|++++
T Consensus 100 ~~---------------------L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~ 158 (570)
T 2z63_A 100 SS---------------------LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158 (570)
T ss_dssp TT---------------------CCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTT
T ss_pred cc---------------------cccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcC
Confidence 21 38888888888887752 2 367888888888888753 45688888888888888
Q ss_pred CcceeecccccCCCCCC----CEEEccCCcCcccChhhhhcccCCcEEEeecCc
Q psy12210 158 NQISKVAVDAFQGLKSL----TSLTLNNNNLTYLPDGVFAELFRLRTLRISENS 207 (405)
Q Consensus 158 n~l~~~~~~~~~~l~~L----~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~ 207 (405)
|.++.+.+..+..+++| +.+++++|.+..+++++|... +|+.+++++|.
T Consensus 159 n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~ 211 (570)
T 2z63_A 159 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNF 211 (570)
T ss_dssp SCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCC
T ss_pred CccceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEeccccc
Confidence 88888877777777777 788888888888888777755 78888888774
No 33
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=1.9e-25 Score=224.56 Aligned_cols=268 Identities=18% Similarity=0.228 Sum_probs=192.0
Q ss_pred ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210 2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS 81 (405)
Q Consensus 2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~ 81 (405)
.|++++|.+..+|+..|+++++|+.|++++|.++ .++...|...
T Consensus 55 ~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~------------------------------------~~~~~~~~~l 98 (597)
T 3oja_B 55 IVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE------------------------------------EIDTYAFAYA 98 (597)
T ss_dssp EEEESSCEESEECTHHHHHCCCCSEEECTTSCCC------------------------------------EECTTTTTTC
T ss_pred EEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCC------------------------------------CCChHHhcCC
Confidence 3566777777777777777777777777777765 2332222111
Q ss_pred CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCCCC---CCCccEEEccCCCCCCCCcccccCCCCCcEEecCCC
Q psy12210 82 GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILL---PEATTELRLEQNDITELPPKAFANYKRLRRIDLSKN 158 (405)
Q Consensus 82 ~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~~~---~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n 158 (405)
. .++.+++++|.++.+|... .++|+.|++++|.++.+++..|.++++|+.|++++|
T Consensus 99 ~---------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N 157 (597)
T 3oja_B 99 H---------------------TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN 157 (597)
T ss_dssp T---------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred C---------------------CCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCC
Confidence 1 1277888888887777543 367888888888888888877888888888888888
Q ss_pred cceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCC
Q psy12210 159 QISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSH 238 (405)
Q Consensus 159 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 238 (405)
.++.+++..|.++++|+.|++++|.++.++. ..+++|+.+++++|.+.... ....+....
T Consensus 158 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---~~l~~L~~L~l~~n~l~~l~-----------------~~~~L~~L~ 217 (597)
T 3oja_B 158 NLERIEDDTFQATTSLQNLQLSSNRLTHVDL---SLIPSLFHANVSYNLLSTLA-----------------IPIAVEELD 217 (597)
T ss_dssp CCCBCCTTTTTTCTTCCEEECTTSCCSBCCG---GGCTTCSEEECCSSCCSEEE-----------------CCTTCSEEE
T ss_pred cCCCCChhhhhcCCcCcEEECcCCCCCCcCh---hhhhhhhhhhcccCcccccc-----------------CCchhheee
Confidence 8888888888888888888888888888763 45778888888888754100 000011111
Q ss_pred CCCCcccccCCCcccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCC
Q psy12210 239 IKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPI 318 (405)
Q Consensus 239 l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~ 318 (405)
+.++.+ ..+.+... .+|+.|++++|.++..+.
T Consensus 218 ls~n~l--------------------------------------~~~~~~~~----------~~L~~L~L~~n~l~~~~~ 249 (597)
T 3oja_B 218 ASHNSI--------------------------------------NVVRGPVN----------VELTILKLQHNNLTDTAW 249 (597)
T ss_dssp CCSSCC--------------------------------------CEEECSCC----------SCCCEEECCSSCCCCCGG
T ss_pred ccCCcc--------------------------------------cccccccC----------CCCCEEECCCCCCCCChh
Confidence 222222 11111110 259999999999998642
Q ss_pred -CCCCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcccChhh
Q psy12210 319 -LLPEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKA 395 (405)
Q Consensus 319 -~~~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~ 395 (405)
...++|+.|+++ |.+.+++ +..|.++++ +.|+|++|+++.++.. +..+++|+.|+|++|.+++++..
T Consensus 250 l~~l~~L~~L~Ls~N~l~~~~--------~~~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~Ls~N~l~~i~~~- 319 (597)
T 3oja_B 250 LLNYPGLVEVDLSYNELEKIM--------YHPFVKMQRLERLYISNNRLVALNLY-GQPIPTLKVLDLSHNHLLHVERN- 319 (597)
T ss_dssp GGGCTTCSEEECCSSCCCEEE--------SGGGTTCSSCCEEECTTSCCCEEECS-SSCCTTCCEEECCSSCCCCCGGG-
T ss_pred hccCCCCCEEECCCCccCCCC--------HHHhcCccCCCEEECCCCCCCCCCcc-cccCCCCcEEECCCCCCCccCcc-
Confidence 225799999999 9999998 789999999 9999999999999764 67799999999999999998865
Q ss_pred cCCCccccC
Q psy12210 396 FANYKRLRR 404 (405)
Q Consensus 396 f~~l~~L~~ 404 (405)
+..+++|++
T Consensus 320 ~~~l~~L~~ 328 (597)
T 3oja_B 320 QPQFDRLEN 328 (597)
T ss_dssp HHHHTTCSE
T ss_pred cccCCCCCE
Confidence 455555554
No 34
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.93 E-value=9.6e-25 Score=227.83 Aligned_cols=254 Identities=17% Similarity=0.208 Sum_probs=180.0
Q ss_pred cCceEEcCCCCccccCCCC---CCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEcc
Q psy12210 104 ADGIVDCREKGLNKVPILL---PEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLN 180 (405)
Q Consensus 104 ~~~~l~~~~n~l~~lp~~~---~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~ 180 (405)
..+.+++++|.++.++... .++++.|++++|.++.+++..|.++++|+.|++++|.++.+.+..|.++++|+.|+++
T Consensus 267 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 346 (844)
T 3j0a_A 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ 346 (844)
T ss_dssp CCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECC
T ss_pred CccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECC
Confidence 4588888888887776433 2578888888888888887778888888888888888888877888888888888888
Q ss_pred CCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCcccc
Q psy12210 181 NNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSME 260 (405)
Q Consensus 181 ~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~ 260 (405)
+|.++.+++..|..+++|+.|++++|.+..... ...+....+.++.+..++....
T Consensus 347 ~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~-----------------~~~L~~L~l~~N~l~~l~~~~~-------- 401 (844)
T 3j0a_A 347 KNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF-----------------IPSIPDIFLSGNKLVTLPKINL-------- 401 (844)
T ss_dssp SCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS-----------------CCSCSEEEEESCCCCCCCCCCT--------
T ss_pred CCCCCccChhhhcCCCCCCEEECCCCCCCcccC-----------------CCCcchhccCCCCccccccccc--------
Confidence 888888888888888888888888887652100 1112222333333333322110
Q ss_pred ccccceecccccCCCCCCCCCCCCCCCCCC-CCCCCCCCccccCceeecCCCCCCcCCCC----CCCCceEEEEE-ecce
Q psy12210 261 TRSKIYREECSTDFHPYNSCPVEKPTGECA-AEPSCPHPCRCADGIVDCREKGLNKVPIL----LPEATTELTYM-VSID 334 (405)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~l~~l~l~~n~l~~~p~~----~~~~l~~L~l~-n~i~ 334 (405)
......++.+++..+....+ ... .+|+.|++++|+++.++.. ..++++.|+++ |.+.
T Consensus 402 ----------~l~~L~ls~N~l~~l~~~~~~~~l-------~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~ 464 (844)
T 3j0a_A 402 ----------TANLIHLSENRLENLDILYFLLRV-------PHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQ 464 (844)
T ss_dssp ----------TCCEEECCSCCCCSSTTHHHHTTC-------TTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCS
T ss_pred ----------ccceeecccCccccCchhhhhhcC-------CccceeeCCCCcccccccccccccCCccccccCCCCccc
Confidence 11122344444444322111 111 2699999999999976543 23689999999 9987
Q ss_pred eeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcccChhhcCCCccccC
Q psy12210 335 RVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404 (405)
Q Consensus 335 ~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~ 404 (405)
.++..+ ..+..|.++++ +.|+|++|+|+.+++..|.++++|+.|+|++|+|+++++..|. ++|++
T Consensus 465 ~~~~~~---~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~ 530 (844)
T 3j0a_A 465 LAWETE---LCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEI 530 (844)
T ss_dssp SSCCSC---CCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCE
T ss_pred cccccc---cchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccE
Confidence 543111 11467889999 9999999999999999999999999999999999999987665 45543
No 35
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.93 E-value=7.8e-25 Score=218.95 Aligned_cols=354 Identities=13% Similarity=0.102 Sum_probs=201.0
Q ss_pred ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210 2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS 81 (405)
Q Consensus 2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~ 81 (405)
.|+|++|+|+++++.+|+++++|++|++++|++++..+ .........+.++++++.+..++...+...
T Consensus 56 ~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~------------~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l 123 (570)
T 2z63_A 56 VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL------------GAFSGLSSLQKLVAVETNLASLENFPIGHL 123 (570)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT------------TTTTTCTTCCEEECTTSCCCCSTTCSCTTC
T ss_pred EEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCH------------hhhcCccccccccccccccccCCCcccccc
Confidence 68999999999999999999999999999999874211 112222335567788888887776444222
Q ss_pred CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccc--cCCCCC--CCccEEEccCCCCCCCCcccccCCCCC----cEE
Q psy12210 82 GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNK--VPILLP--EATTELRLEQNDITELPPKAFANYKRL----RRI 153 (405)
Q Consensus 82 ~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~--lp~~~~--~~L~~L~L~~n~i~~l~~~~~~~l~~L----~~L 153 (405)
.. ++++++++|.++. +|..+. ++|+.|++++|.++.+++..++.+.+| +.+
T Consensus 124 ~~---------------------L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L 182 (570)
T 2z63_A 124 KT---------------------LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182 (570)
T ss_dssp TT---------------------CCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEE
T ss_pred cc---------------------ccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhc
Confidence 11 2566666666654 344332 456666666666666555555555555 555
Q ss_pred ecCCCcceeeccccc-----------------------------------------------------------------
Q psy12210 154 DLSKNQISKVAVDAF----------------------------------------------------------------- 168 (405)
Q Consensus 154 ~ls~n~l~~~~~~~~----------------------------------------------------------------- 168 (405)
++++|.++.+.+..|
T Consensus 183 ~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l 262 (570)
T 2z63_A 183 DLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262 (570)
T ss_dssp ECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEE
T ss_pred ccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhh
Confidence 666655555544433
Q ss_pred ----------------CCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccC--chHHHHH-HhhcC----
Q psy12210 169 ----------------QGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCH--LSWLHRW-LKRYP---- 225 (405)
Q Consensus 169 ----------------~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~--l~~~~~~-~~~~~---- 225 (405)
..+++|+.|++++|.+..++.. +..+ +|+.|++++|.+..... +..+... +....
T Consensus 263 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~-~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~ 340 (570)
T 2z63_A 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF-SYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA 340 (570)
T ss_dssp EEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBC-CSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCB
T ss_pred hhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhh-hccC-CccEEeeccCcccccCcccccccCEEeCcCCccccc
Confidence 3445555666666655555542 3334 55555555555431000 0000000 00000
Q ss_pred CCCCccccCCCCCCCCCcccccC--CCcccccC-cc--------ccccccceecccccCCCCCCCCCCCCCCC-CCCCCC
Q psy12210 226 RLGLYTKCFAPSHIKGQNILDIP--EHEFKCSG-SS--------METRSKIYREECSTDFHPYNSCPVEKPTG-ECAAEP 293 (405)
Q Consensus 226 ~~~~~~~~~~~~~l~~~~l~~l~--~~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~ 293 (405)
........+....+.++.+..+. ...+...+ .. .......+..........++.+.+..... ..+...
T Consensus 341 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 420 (570)
T 2z63_A 341 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 420 (570)
T ss_dssp CCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTC
T ss_pred cccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcC
Confidence 00001111112222222222211 00000000 00 00000002222223333344444433322 122222
Q ss_pred CCCCCccccCceeecCCCCCCcCCCCC---CCCceEEEEE-eccee-eeccchhccccccccCCcc-ceEEecCCCCccc
Q psy12210 294 SCPHPCRCADGIVDCREKGLNKVPILL---PEATTELTYM-VSIDR-VDKVLLYSYISNNFKRWTN-RSRRLEQNDITEL 367 (405)
Q Consensus 294 ~~~~~~~~~l~~l~l~~n~l~~~p~~~---~~~l~~L~l~-n~i~~-i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i 367 (405)
.+|++|++++|.++..+... .++++.|+++ |.+.+ .. +..+..+++ +.|++++|+++.+
T Consensus 421 -------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--------p~~~~~l~~L~~L~l~~n~l~~~ 485 (570)
T 2z63_A 421 -------RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL--------PDIFTELRNLTFLDLSQCQLEQL 485 (570)
T ss_dssp -------TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEE--------CSCCTTCTTCCEEECTTSCCCEE
T ss_pred -------CCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccc--------hhhhhcccCCCEEECCCCccccC
Confidence 27889999999888765443 3688999999 88862 22 378899999 9999999999999
Q ss_pred CcccccCCccCceeecccCCCcccChhhcCCCccccCC
Q psy12210 368 PPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405 (405)
Q Consensus 368 ~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L 405 (405)
.+..|.++++|+.|+|++|+++++++..|.++++|++|
T Consensus 486 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 523 (570)
T 2z63_A 486 SPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKI 523 (570)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred ChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEE
Confidence 88889999999999999999999998889888888754
No 36
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=1.8e-25 Score=210.20 Aligned_cols=115 Identities=30% Similarity=0.399 Sum_probs=103.1
Q ss_pred CCCCCCccccC-ceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCC
Q psy12210 95 PSCPHPCRCAD-GIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKS 173 (405)
Q Consensus 95 ~~~p~~~~c~~-~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~ 173 (405)
..|+..|.|.. .++++++++++++|..++++++.|++++|.++.+++..|.++++|+.|++++|.++.+.+..|.++++
T Consensus 22 ~~~~~~~~C~~~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (353)
T 2z80_A 22 SSNQASLSCDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS 101 (353)
T ss_dssp -----CCEECTTSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred CCCccCCCCCCCeEeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCC
Confidence 34566677754 56899999999999999999999999999999999888999999999999999999999889999999
Q ss_pred CCEEEccCCcCcccChhhhhcccCCcEEEeecCccc
Q psy12210 174 LTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFI 209 (405)
Q Consensus 174 L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~ 209 (405)
|++|++++|.++.+++.+|..+++|+.|++++|.+.
T Consensus 102 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 137 (353)
T 2z80_A 102 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK 137 (353)
T ss_dssp CCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS
T ss_pred CCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc
Confidence 999999999999999988999999999999999865
No 37
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=5.5e-25 Score=227.28 Aligned_cols=333 Identities=14% Similarity=0.139 Sum_probs=197.2
Q ss_pred ccccCCCcCcc------------------CCchh-hccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCC
Q psy12210 2 PRTLNNNNLTY------------------LPDGV-FAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAP 62 (405)
Q Consensus 2 ~L~l~~n~i~~------------------l~~~~-f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 62 (405)
.|+|++|+|++ +|+.. |.++++|+.|+|++|.+.+..+ ........+..
T Consensus 452 ~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP------------~~l~~L~~L~~ 519 (876)
T 4ecn_A 452 IIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP------------DFLYDLPELQS 519 (876)
T ss_dssp EEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCC------------GGGGGCSSCCE
T ss_pred EEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccCh------------HHHhCCCCCCE
Confidence 57888999988 66542 3389999999999988775333 11111222445
Q ss_pred CcccCCc-ccc--cCCCccccCCCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCC--CC--CCCccEEEccCCC
Q psy12210 63 SHIKGQN-ILD--IPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPI--LL--PEATTELRLEQND 135 (405)
Q Consensus 63 ~~l~~~~-l~~--l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~--~~--~~~L~~L~L~~n~ 135 (405)
+++++|. +.. +|.......+. ... -..++.+++++|.++.+|. .+ .++|+.|++++|.
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~----~~~-----------l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~ 584 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADD----EDT-----------GPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK 584 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHC----TTT-----------TTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC
T ss_pred EECcCCCCcccccchHHHHhhhhc----ccc-----------cCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC
Confidence 5666665 543 43322111000 000 0013677777777777766 33 2467777777777
Q ss_pred CCCCCcccccCCCCCcEEecCCCcceeecccccCCCCC-CCEEEccCCcCcccChhhhhcccC--CcEEEeecCcccccc
Q psy12210 136 ITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKS-LTSLTLNNNNLTYLPDGVFAELFR--LRTLRISENSFICDC 212 (405)
Q Consensus 136 i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~l~~~~f~~l~~--L~~L~l~~N~l~~~~ 212 (405)
++.++ .|.++++|+.|++++|.+..++ ..+..+++ |+.|++++|.++.++. .+..+.. |+.|++++|.+...-
T Consensus 585 l~~lp--~~~~L~~L~~L~Ls~N~l~~lp-~~l~~l~~~L~~L~Ls~N~L~~lp~-~~~~~~~~~L~~L~Ls~N~l~g~i 660 (876)
T 4ecn_A 585 VRHLE--AFGTNVKLTDLKLDYNQIEEIP-EDFCAFTDQVEGLGFSHNKLKYIPN-IFNAKSVYVMGSVDFSYNKIGSEG 660 (876)
T ss_dssp CCBCC--CCCTTSEESEEECCSSCCSCCC-TTSCEECTTCCEEECCSSCCCSCCS-CCCTTCSSCEEEEECCSSCTTTTS
T ss_pred cccch--hhcCCCcceEEECcCCccccch-HHHhhccccCCEEECcCCCCCcCch-hhhccccCCCCEEECcCCcCCCcc
Confidence 77665 4667777777777777776443 44666666 7777777777776653 3444433 677777776654210
Q ss_pred -----Cc------------------hHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCccccccccceecc
Q psy12210 213 -----HL------------------SWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREE 269 (405)
Q Consensus 213 -----~l------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 269 (405)
.+ ..++.... .....+..+.+.++.+..++...+..... .....
T Consensus 661 p~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~------~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~-------~l~nl 727 (876)
T 4ecn_A 661 RNISCSMDDYKGINASTVTLSYNEIQKFPTELF------ATGSPISTIILSNNLMTSIPENSLKPKDG-------NYKNT 727 (876)
T ss_dssp SSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHH------HTTCCCSEEECCSCCCSCCCTTSSSCTTS-------CCTTG
T ss_pred ccchhhhccccCCCcCEEEccCCcCCccCHHHH------ccCCCCCEEECCCCcCCccChHHhccccc-------ccccc
Confidence 00 00000000 00112223334444444444433321100 00111
Q ss_pred cccCCCCCCCCCCCCCCCCCC-CCCCCCCCccccCceeecCCCCCCcCCCCC--CCCceEEEEE-ec------ceeeecc
Q psy12210 270 CSTDFHPYNSCPVEKPTGECA-AEPSCPHPCRCADGIVDCREKGLNKVPILL--PEATTELTYM-VS------IDRVDKV 339 (405)
Q Consensus 270 ~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~--~~~l~~L~l~-n~------i~~i~~~ 339 (405)
.......++.+.++.++.... ..+ .+|+.|++++|.++.+|..+ .++|+.|+++ |+ +.+..
T Consensus 728 ~~L~~L~Ls~N~L~~lp~~l~~~~l-------~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~i-- 798 (876)
T 4ecn_A 728 YLLTTIDLRFNKLTSLSDDFRATTL-------PYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQW-- 798 (876)
T ss_dssp GGCCEEECCSSCCCCCCGGGSTTTC-------TTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCC--
T ss_pred CCccEEECCCCCCccchHHhhhccC-------CCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccC--
Confidence 144455677777775543322 123 37999999999999998665 4789999996 54 33333
Q ss_pred chhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcccChhhc
Q psy12210 340 LLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAF 396 (405)
Q Consensus 340 ~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f 396 (405)
+..|..+++ +.|+|++|+|..+|.. +. ++|+.|+|++|++..+....|
T Consensus 799 ------p~~l~~L~~L~~L~Ls~N~L~~Ip~~-l~--~~L~~LdLs~N~l~~i~~~~~ 847 (876)
T 4ecn_A 799 ------PTGITTCPSLIQLQIGSNDIRKVDEK-LT--PQLYILDIADNPNISIDVTSV 847 (876)
T ss_dssp ------CTTGGGCSSCCEEECCSSCCCBCCSC-CC--SSSCEEECCSCTTCEEECGGG
T ss_pred ------hHHHhcCCCCCEEECCCCCCCccCHh-hc--CCCCEEECCCCCCCccChHHc
Confidence 578999999 9999999999999876 33 699999999999998875544
No 38
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.92 E-value=3.8e-25 Score=218.86 Aligned_cols=331 Identities=12% Similarity=0.103 Sum_probs=184.0
Q ss_pred ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210 2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS 81 (405)
Q Consensus 2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~ 81 (405)
.|+|++|+|+++++.+|.++++|++|++++|++++..+ .........+.+++++|.++.++... ..
T Consensus 25 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~------------~~~~~l~~L~~L~Ls~N~l~~lp~~~--l~ 90 (520)
T 2z7x_B 25 ILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDI------------SVFKFNQELEYLDLSHNKLVKISCHP--TV 90 (520)
T ss_dssp EEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEG------------GGGTTCTTCCEEECCSSCCCEEECCC--CC
T ss_pred EEECCCCcccccChhhccccccccEEecCCCccCCcCh------------HHhhcccCCCEEecCCCceeecCccc--cC
Confidence 57778888888777778888888888888887764221 11111223455677777777766541 11
Q ss_pred CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCcccc--CCCC--CCCccEEEccCCCCCCCCcccccCCCCC--cEEec
Q psy12210 82 GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKV--PILL--PEATTELRLEQNDITELPPKAFANYKRL--RRIDL 155 (405)
Q Consensus 82 ~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~l--p~~~--~~~L~~L~L~~n~i~~l~~~~~~~l~~L--~~L~l 155 (405)
.++++++++|.++.+ |..+ .++|++|++++|.++. ..+..+++| +.|++
T Consensus 91 ----------------------~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l 145 (520)
T 2z7x_B 91 ----------------------NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLL 145 (520)
T ss_dssp ----------------------CCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEE
T ss_pred ----------------------CccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEe
Confidence 126777777777653 3333 2566777777776654 234455555 66666
Q ss_pred CCCcc--eeecccccCCC--------------------------------------------------------------
Q psy12210 156 SKNQI--SKVAVDAFQGL-------------------------------------------------------------- 171 (405)
Q Consensus 156 s~n~l--~~~~~~~~~~l-------------------------------------------------------------- 171 (405)
++|.+ ....|..+..+
T Consensus 146 ~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L 225 (520)
T 2z7x_B 146 VLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNL 225 (520)
T ss_dssp EECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEE
T ss_pred ecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhc
Confidence 66655 33333333321
Q ss_pred ---------------------CCCCEEEccCCcCc-ccChhhh----hcccCCcEEEeecCccccccCchHHHHHHhhcC
Q psy12210 172 ---------------------KSLTSLTLNNNNLT-YLPDGVF----AELFRLRTLRISENSFICDCHLSWLHRWLKRYP 225 (405)
Q Consensus 172 ---------------------~~L~~L~l~~n~l~-~l~~~~f----~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~ 225 (405)
++|++|++++|.++ .++...| ..+++|+.+++++|.+. ....++..+.....
T Consensus 226 ~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~--~p~~~~~~~~~~~~ 303 (520)
T 2z7x_B 226 TLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFG--FPQSYIYEIFSNMN 303 (520)
T ss_dssp EEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCC--SCTHHHHHHHHTCC
T ss_pred cccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEecccccccee--cchhhhhcccccCc
Confidence 26777777777777 5554332 67778888888887762 11122322221111
Q ss_pred CCC--------------CccccCCCCCCCCCcccccCCCcccccCccccccccceecccccCCCCCCCCCCCCCCC--CC
Q psy12210 226 RLG--------------LYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTG--EC 289 (405)
Q Consensus 226 ~~~--------------~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~ 289 (405)
... .....+....+.++.+.+.....+ ..........++.+.+..++. ..
T Consensus 304 L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--------------~~l~~L~~L~L~~N~l~~l~~~~~~ 369 (520)
T 2z7x_B 304 IKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENC--------------GHLTELETLILQMNQLKELSKIAEM 369 (520)
T ss_dssp CSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTC--------------CCCSSCCEEECCSSCCCBHHHHHHH
T ss_pred eeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhh--------------ccCCCCCEEEccCCccCccccchHH
Confidence 110 111122223333333333222211 112222333344444443211 11
Q ss_pred CCCCCCCCCccccCceeecCCCCCCc-CCCCC---CCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCC
Q psy12210 290 AAEPSCPHPCRCADGIVDCREKGLNK-VPILL---PEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQND 363 (405)
Q Consensus 290 ~~~~~~~~~~~~~l~~l~l~~n~l~~-~p~~~---~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~ 363 (405)
+.... +|++|++++|.++. +|... .+.+++|+++ |++.+.. +..+. ++ +.|+|++|+
T Consensus 370 ~~~l~-------~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~--------~~~l~--~~L~~L~Ls~N~ 432 (520)
T 2z7x_B 370 TTQMK-------SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTI--------FRCLP--PRIKVLDLHSNK 432 (520)
T ss_dssp HTTCT-------TCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGG--------GGSCC--TTCCEEECCSSC
T ss_pred HhhCC-------CCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcch--------hhhhc--ccCCEEECCCCc
Confidence 12222 57777777777776 66442 2567777777 7765433 22222 56 888888888
Q ss_pred CcccCcccccCCccCceeecccCCCcccChhhcCCCccccCC
Q psy12210 364 ITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405 (405)
Q Consensus 364 i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L 405 (405)
|+.++...+ .+++|+.|+|++|++++++...|.++++|++|
T Consensus 433 l~~ip~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L 473 (520)
T 2z7x_B 433 IKSIPKQVV-KLEALQELNVASNQLKSVPDGIFDRLTSLQKI 473 (520)
T ss_dssp CCCCCGGGG-GCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccccchhhh-cCCCCCEEECCCCcCCccCHHHhccCCcccEE
Confidence 887776644 67888888888888888887667777777653
No 39
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=9.7e-25 Score=198.06 Aligned_cols=226 Identities=21% Similarity=0.255 Sum_probs=156.3
Q ss_pred CccccC--ceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEE
Q psy12210 100 PCRCAD--GIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSL 177 (405)
Q Consensus 100 ~~~c~~--~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L 177 (405)
.|.|.. ..++|.+.+++++|..+++++++|++++|.++.+++..|.++++|++|++++|.++.+++..|.++++|++|
T Consensus 2 ~C~~~~~~~~~~c~~~~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 81 (276)
T 2z62_A 2 PCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTL 81 (276)
T ss_dssp CSEEEETTTEEECTTSCCSSCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CceeccCCceEEecCCCccccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEE
Confidence 355543 589999999999999999999999999999999998889999999999999999999998899999999999
Q ss_pred EccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCc
Q psy12210 178 TLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGS 257 (405)
Q Consensus 178 ~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~ 257 (405)
++++|.++.++++.|..+++|+.|++++|.+... ..........+....+.++.+..+..
T Consensus 82 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------------~~~~~~~l~~L~~L~l~~n~l~~~~l-------- 141 (276)
T 2z62_A 82 ILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL------------ENFPIGHLKTLKELNVAHNLIQSFKL-------- 141 (276)
T ss_dssp ECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCS------------TTCCCTTCTTCCEEECCSSCCCCCCC--------
T ss_pred ECCCCccCccChhhhcCCccccEEECCCCCcccc------------CchhcccCCCCCEEECcCCccceecC--------
Confidence 9999999999988999999999999999986510 00001111111112222222221110
Q ss_pred cccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCCC---CCce----EEEEE
Q psy12210 258 SMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLP---EATT----ELTYM 330 (405)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~~---~~l~----~L~l~ 330 (405)
...+..+ .+|++|++++|+++.++...+ +.++ .|+++
T Consensus 142 -----------------------------~~~~~~l-------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls 185 (276)
T 2z62_A 142 -----------------------------PEYFSNL-------TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185 (276)
T ss_dssp -----------------------------CGGGGGC-------TTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECC
T ss_pred -----------------------------chhhccC-------CCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecC
Confidence 0011111 146667777776666654332 2222 56666
Q ss_pred -ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcc
Q psy12210 331 -VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITE 390 (405)
Q Consensus 331 -n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~ 390 (405)
|.+..++ +..+... + +.|+|++|+|+.+++..|.++++|+.|+|++|.++.
T Consensus 186 ~n~l~~~~--------~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 186 LNPMNFIQ--------PGAFKEI-RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp SSCCCEEC--------TTSSCSC-CEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred CCcccccC--------ccccCCC-cccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 6666666 4444333 5 677777777777766666667777777777776653
No 40
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.92 E-value=1.5e-24 Score=210.01 Aligned_cols=237 Identities=24% Similarity=0.335 Sum_probs=190.4
Q ss_pred ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210 2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS 81 (405)
Q Consensus 2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~ 81 (405)
.++.++++++.+|... .++++.|+|++|.+++ ++...|...
T Consensus 47 ~v~c~~~~l~~iP~~~---~~~l~~L~L~~n~i~~------------------------------------~~~~~~~~l 87 (440)
T 3zyj_A 47 KVICVRKNLREVPDGI---STNTRLLNLHENQIQI------------------------------------IKVNSFKHL 87 (440)
T ss_dssp EEECCSCCCSSCCSCC---CTTCSEEECCSCCCCE------------------------------------ECTTTTSSC
T ss_pred EEEeCCCCcCcCCCCC---CCCCcEEEccCCcCCe------------------------------------eCHHHhhCC
Confidence 3567788899988753 3678999999998862 221222111
Q ss_pred CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCCC-C--CCCccEEEccCCCCCCCCcccccCCCCCcEEecCCC
Q psy12210 82 GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPIL-L--PEATTELRLEQNDITELPPKAFANYKRLRRIDLSKN 158 (405)
Q Consensus 82 ~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~~-~--~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n 158 (405)
. .++.+++++|.++.++.. + .++|+.|++++|.++.+++..|..+++|++|++++|
T Consensus 88 ~---------------------~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 146 (440)
T 3zyj_A 88 R---------------------HLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN 146 (440)
T ss_dssp S---------------------SCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSC
T ss_pred C---------------------CCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCC
Confidence 0 126777777777776632 2 268999999999999999888999999999999999
Q ss_pred cceeecccccCCCCCCCEEEccC-CcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCC
Q psy12210 159 QISKVAVDAFQGLKSLTSLTLNN-NNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPS 237 (405)
Q Consensus 159 ~l~~~~~~~~~~l~~L~~L~l~~-n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 237 (405)
.++.+++..|.++++|++|++++ +.+..+++..|..+++|+.|++++|.+.
T Consensus 147 ~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~---------------------------- 198 (440)
T 3zyj_A 147 PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR---------------------------- 198 (440)
T ss_dssp CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS----------------------------
T ss_pred cccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc----------------------------
Confidence 99999988899999999999998 5688888888999999999999998754
Q ss_pred CCCCCcccccCCCcccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCC
Q psy12210 238 HIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVP 317 (405)
Q Consensus 238 ~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p 317 (405)
.++. +... .+|+.|++++|.++.++
T Consensus 199 --------~~~~--~~~l---------------------------------------------~~L~~L~Ls~N~l~~~~ 223 (440)
T 3zyj_A 199 --------EIPN--LTPL---------------------------------------------IKLDELDLSGNHLSAIR 223 (440)
T ss_dssp --------SCCC--CTTC---------------------------------------------SSCCEEECTTSCCCEEC
T ss_pred --------cccc--cCCC---------------------------------------------cccCEEECCCCccCccC
Confidence 1111 1000 15999999999999986
Q ss_pred CCCC---CCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCc
Q psy12210 318 ILLP---EATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDIT 389 (405)
Q Consensus 318 ~~~~---~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~ 389 (405)
...+ ++|+.|+++ |++..++ +..|.++++ +.|+|++|+|+.+++..|..+++|+.|+|++|.+.
T Consensus 224 ~~~~~~l~~L~~L~L~~n~l~~~~--------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 224 PGSFQGLMHLQKLWMIQSQIQVIE--------RNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TTTTTTCTTCCEEECTTCCCCEEC--------TTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred hhhhccCccCCEEECCCCceeEEC--------hhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 5543 689999999 9999998 889999999 99999999999999999999999999999999864
No 41
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=1.3e-24 Score=207.21 Aligned_cols=143 Identities=20% Similarity=0.266 Sum_probs=119.1
Q ss_pred ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210 2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS 81 (405)
Q Consensus 2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~ 81 (405)
.|+|++|+|+++++.+|+++++|++|++++|.+++ ++...+...
T Consensus 73 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~------------------------------------~~~~~~~~l 116 (390)
T 3o6n_A 73 LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY------------------------------------LPPHVFQNV 116 (390)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC------------------------------------CCTTTTTTC
T ss_pred EEECCCCcccccChhhccCCCCcCEEECCCCCCCc------------------------------------CCHHHhcCC
Confidence 68999999999999999999999999999999862 221111111
Q ss_pred CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCCCC---CCCccEEEccCCCCCCCCcccccCCCCCcEEecCCC
Q psy12210 82 GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILL---PEATTELRLEQNDITELPPKAFANYKRLRRIDLSKN 158 (405)
Q Consensus 82 ~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~~~---~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n 158 (405)
. .++.+++++|.++.+|... .++|++|++++|.++.+++..|.++++|++|++++|
T Consensus 117 ~---------------------~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 175 (390)
T 3o6n_A 117 P---------------------LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN 175 (390)
T ss_dssp T---------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSS
T ss_pred C---------------------CCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCC
Confidence 0 1288999999999998764 368999999999999999988999999999999999
Q ss_pred cceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccc
Q psy12210 159 QISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFI 209 (405)
Q Consensus 159 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~ 209 (405)
.++.++ +..+++|+.|++++|.++.++ ..++|+.|++++|.+.
T Consensus 176 ~l~~~~---~~~l~~L~~L~l~~n~l~~~~-----~~~~L~~L~l~~n~l~ 218 (390)
T 3o6n_A 176 RLTHVD---LSLIPSLFHANVSYNLLSTLA-----IPIAVEELDASHNSIN 218 (390)
T ss_dssp CCSBCC---GGGCTTCSEEECCSSCCSEEE-----CCSSCSEEECCSSCCC
T ss_pred cCCccc---cccccccceeecccccccccC-----CCCcceEEECCCCeee
Confidence 999875 556789999999999988764 3468999999999876
No 42
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=5.2e-24 Score=199.72 Aligned_cols=286 Identities=14% Similarity=0.110 Sum_probs=173.1
Q ss_pred ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210 2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS 81 (405)
Q Consensus 2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~ 81 (405)
.|++++|+++.++. |..+++|++|++++|.+++..+ .......+.++++++.+.+++. +...
T Consensus 48 ~L~l~~~~i~~~~~--~~~~~~L~~L~l~~n~i~~~~~--------------~~~l~~L~~L~L~~n~i~~~~~--~~~l 109 (347)
T 4fmz_A 48 KLVVAGEKVASIQG--IEYLTNLEYLNLNGNQITDISP--------------LSNLVKLTNLYIGTNKITDISA--LQNL 109 (347)
T ss_dssp EEECCSSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG--------------GTTCTTCCEEECCSSCCCCCGG--GTTC
T ss_pred EEEEeCCccccchh--hhhcCCccEEEccCCccccchh--------------hhcCCcCCEEEccCCcccCchH--HcCC
Confidence 46777788877754 6778888888888887763211 0111123344555555554431 1111
Q ss_pred CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCC-CCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcc
Q psy12210 82 GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPI-LLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQI 160 (405)
Q Consensus 82 ~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~-~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l 160 (405)
. .++.+++++|.++.+|. .-.++++.|++++|......+ .+..+++|+.|++++|.+
T Consensus 110 ~---------------------~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~ 167 (347)
T 4fmz_A 110 T---------------------NLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKV 167 (347)
T ss_dssp T---------------------TCSEEECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCC
T ss_pred C---------------------cCCEEECcCCcccCchhhccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCc
Confidence 0 12666666666666554 112466666666664333332 256666666666666666
Q ss_pred eeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCC
Q psy12210 161 SKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIK 240 (405)
Q Consensus 161 ~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 240 (405)
..+.+ +..+++|+.|++++|.+..++. +..+++|+.+++++|.+..... ......+...
T Consensus 168 ~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--------------~~~~~~L~~L--- 226 (347)
T 4fmz_A 168 KDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--------------VANMTRLNSL--- 226 (347)
T ss_dssp CCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--------------GGGCTTCCEE---
T ss_pred CCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--------------hhcCCcCCEE---
Confidence 65543 5566666666666666666654 5566666666666665431000 0001111111
Q ss_pred CCcccccCCCcccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCC-C
Q psy12210 241 GQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPI-L 319 (405)
Q Consensus 241 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~-~ 319 (405)
.++.+.+..... +... .+++.|++++|.++.++. .
T Consensus 227 -----------------------------------~l~~n~l~~~~~--~~~l-------~~L~~L~l~~n~l~~~~~~~ 262 (347)
T 4fmz_A 227 -----------------------------------KIGNNKITDLSP--LANL-------SQLTWLEIGTNQISDINAVK 262 (347)
T ss_dssp -----------------------------------ECCSSCCCCCGG--GTTC-------TTCCEEECCSSCCCCCGGGT
T ss_pred -----------------------------------EccCCccCCCcc--hhcC-------CCCCEEECCCCccCCChhHh
Confidence 222222222221 1111 268899999998888753 2
Q ss_pred CCCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcccChhhcC
Q psy12210 320 LPEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFA 397 (405)
Q Consensus 320 ~~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~ 397 (405)
..+++++|+++ |.+.+++ .+..+++ +.|++++|+++.+++..|.++++|+.|+|++|+++++++ +.
T Consensus 263 ~l~~L~~L~l~~n~l~~~~----------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~ 330 (347)
T 4fmz_A 263 DLTKLKMLNVGSNQISDIS----------VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LA 330 (347)
T ss_dssp TCTTCCEEECCSSCCCCCG----------GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GG
T ss_pred cCCCcCEEEccCCccCCCh----------hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hh
Confidence 34788999999 8888875 4778888 999999999998888888889999999999999988876 55
Q ss_pred CCccccC
Q psy12210 398 NYKRLRR 404 (405)
Q Consensus 398 ~l~~L~~ 404 (405)
.+++|++
T Consensus 331 ~l~~L~~ 337 (347)
T 4fmz_A 331 SLSKMDS 337 (347)
T ss_dssp GCTTCSE
T ss_pred hhhccce
Confidence 6666654
No 43
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.92 E-value=1.8e-24 Score=210.19 Aligned_cols=236 Identities=21% Similarity=0.330 Sum_probs=190.2
Q ss_pred cccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccCC
Q psy12210 3 RTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSG 82 (405)
Q Consensus 3 L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~ 82 (405)
++.++++++.+|... .++++.|+|++|.|++ +....|....
T Consensus 59 v~c~~~~l~~iP~~~---~~~l~~L~L~~n~i~~------------------------------------~~~~~~~~l~ 99 (452)
T 3zyi_A 59 VVCTRRGLSEVPQGI---PSNTRYLNLMENNIQM------------------------------------IQADTFRHLH 99 (452)
T ss_dssp EECCSSCCSSCCSCC---CTTCSEEECCSSCCCE------------------------------------ECTTTTTTCT
T ss_pred EEECCCCcCccCCCC---CCCccEEECcCCcCce------------------------------------ECHHHcCCCC
Confidence 567788888888742 3688999999998862 2112221111
Q ss_pred CCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCCC-C--CCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCc
Q psy12210 83 PVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPIL-L--PEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQ 159 (405)
Q Consensus 83 ~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~~-~--~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~ 159 (405)
.++.+++++|.++.++.. + .++|+.|++++|.++.+++..|..+++|++|++++|.
T Consensus 100 ---------------------~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 158 (452)
T 3zyi_A 100 ---------------------HLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNP 158 (452)
T ss_dssp ---------------------TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCC
T ss_pred ---------------------CCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCC
Confidence 127777888887777643 2 2689999999999999998889999999999999999
Q ss_pred ceeecccccCCCCCCCEEEccC-CcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCC
Q psy12210 160 ISKVAVDAFQGLKSLTSLTLNN-NNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSH 238 (405)
Q Consensus 160 l~~~~~~~~~~l~~L~~L~l~~-n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 238 (405)
++.+++..|..+++|++|++++ +.+..++...|..+++|+.|++++|.+.
T Consensus 159 l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~----------------------------- 209 (452)
T 3zyi_A 159 IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK----------------------------- 209 (452)
T ss_dssp CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-----------------------------
T ss_pred cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-----------------------------
Confidence 9999988899999999999998 5688999888999999999999998754
Q ss_pred CCCCcccccCCCcccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCC
Q psy12210 239 IKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPI 318 (405)
Q Consensus 239 l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~ 318 (405)
.++. +... .+|+.|++++|.++.++.
T Consensus 210 -------~~~~--~~~l---------------------------------------------~~L~~L~Ls~N~l~~~~~ 235 (452)
T 3zyi_A 210 -------DMPN--LTPL---------------------------------------------VGLEELEMSGNHFPEIRP 235 (452)
T ss_dssp -------SCCC--CTTC---------------------------------------------TTCCEEECTTSCCSEECG
T ss_pred -------cccc--cccc---------------------------------------------ccccEEECcCCcCcccCc
Confidence 1110 1000 159999999999998865
Q ss_pred CC---CCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCc
Q psy12210 319 LL---PEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDIT 389 (405)
Q Consensus 319 ~~---~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~ 389 (405)
.. .++|+.|+++ |++..++ +..|.++++ +.|+|++|+|+.+++..|..+++|+.|+|++|.+.
T Consensus 236 ~~~~~l~~L~~L~L~~n~l~~~~--------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 236 GSFHGLSSLKKLWVMNSQVSLIE--------RNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp GGGTTCTTCCEEECTTSCCCEEC--------TTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred ccccCccCCCEEEeCCCcCceEC--------HHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 43 3689999999 9999998 788999999 99999999999999999999999999999999865
No 44
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.92 E-value=9.5e-25 Score=218.02 Aligned_cols=64 Identities=19% Similarity=0.168 Sum_probs=49.0
Q ss_pred CccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCC
Q psy12210 1 MPRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEH 76 (405)
Q Consensus 1 ~~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~ 76 (405)
..|+|++|+|+++++.+|+++++|++|++++|++++..+ .........+.+++++|.++.++..
T Consensus 55 ~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------------~~~~~l~~L~~L~Ls~N~l~~lp~~ 118 (562)
T 3a79_B 55 KALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDF------------HVFLFNQDLEYLDVSHNRLQNISCC 118 (562)
T ss_dssp CEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECT------------TTTTTCTTCCEEECTTSCCCEECSC
T ss_pred CEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCH------------HHhCCCCCCCEEECCCCcCCccCcc
Confidence 368999999999999999999999999999999974221 2122223356678888888888765
No 45
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.91 E-value=2.5e-24 Score=212.93 Aligned_cols=153 Identities=18% Similarity=0.126 Sum_probs=117.0
Q ss_pred ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210 2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS 81 (405)
Q Consensus 2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~ 81 (405)
+||+++|+|+.+|...+ ++|++|++++|.+++..+. .+.. ....+.+++++|.+..+....|...
T Consensus 4 ~l~ls~n~l~~ip~~~~---~~L~~L~Ls~n~i~~~~~~-----~~~~-------l~~L~~L~Ls~n~l~~~~~~~~~~l 68 (520)
T 2z7x_B 4 LVDRSKNGLIHVPKDLS---QKTTILNISQNYISELWTS-----DILS-------LSKLRILIISHNRIQYLDISVFKFN 68 (520)
T ss_dssp EEECTTSCCSSCCCSCC---TTCSEEECCSSCCCCCCHH-----HHTT-------CTTCCEEECCSSCCCEEEGGGGTTC
T ss_pred eEecCCCCccccccccc---ccccEEECCCCcccccChh-----hccc-------cccccEEecCCCccCCcChHHhhcc
Confidence 68999999999997543 8999999999999753221 1111 1224567888999988866555433
Q ss_pred CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCCCCCCCccEEEccCCCCCCCC-cccccCCCCCcEEecCCCcc
Q psy12210 82 GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELP-PKAFANYKRLRRIDLSKNQI 160 (405)
Q Consensus 82 ~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~-~~~~~~l~~L~~L~ls~n~l 160 (405)
.. ++++++++|.++.+|..-.++|++|++++|.++.++ +..|+++++|++|++++|.+
T Consensus 69 ~~---------------------L~~L~Ls~N~l~~lp~~~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l 127 (520)
T 2z7x_B 69 QE---------------------LEYLDLSHNKLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHL 127 (520)
T ss_dssp TT---------------------CCEEECCSSCCCEEECCCCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSC
T ss_pred cC---------------------CCEEecCCCceeecCccccCCccEEeccCCccccccchhhhccCCcceEEEecCccc
Confidence 22 399999999999999875679999999999999864 46799999999999999998
Q ss_pred eeecccccCCCCCC--CEEEccCCcC--cccChhhhh
Q psy12210 161 SKVAVDAFQGLKSL--TSLTLNNNNL--TYLPDGVFA 193 (405)
Q Consensus 161 ~~~~~~~~~~l~~L--~~L~l~~n~l--~~l~~~~f~ 193 (405)
+. ..+..+++| +.|++++|.+ ....+..+.
T Consensus 128 ~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~ 161 (520)
T 2z7x_B 128 EK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQ 161 (520)
T ss_dssp CG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTT
T ss_pred ch---hhccccccceeeEEEeeccccccccccccccc
Confidence 76 346777788 9999999988 444333333
No 46
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=5.2e-24 Score=214.06 Aligned_cols=143 Identities=20% Similarity=0.266 Sum_probs=119.5
Q ss_pred ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210 2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS 81 (405)
Q Consensus 2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~ 81 (405)
.|+|++|+|+++++.+|+++++|+.|+|++|.+++ ++...|...
T Consensus 79 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------------------------------------~~~~~~~~l 122 (597)
T 3oja_B 79 LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY------------------------------------LPPHVFQNV 122 (597)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC------------------------------------CCTTTTTTC
T ss_pred EEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCC------------------------------------CCHHHHcCC
Confidence 68999999999999999999999999999999862 222222111
Q ss_pred CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCCCC---CCCccEEEccCCCCCCCCcccccCCCCCcEEecCCC
Q psy12210 82 GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILL---PEATTELRLEQNDITELPPKAFANYKRLRRIDLSKN 158 (405)
Q Consensus 82 ~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~~~---~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n 158 (405)
. .++.+++++|.++.+|... .++|++|++++|.++.+++..|.++++|+.|++++|
T Consensus 123 ~---------------------~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 181 (597)
T 3oja_B 123 P---------------------LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN 181 (597)
T ss_dssp T---------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTS
T ss_pred C---------------------CCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCC
Confidence 1 1388999999999998764 368999999999999999988999999999999999
Q ss_pred cceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccc
Q psy12210 159 QISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFI 209 (405)
Q Consensus 159 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~ 209 (405)
.++.++ +..+++|+.|++++|.++.++ ..++|+.|++++|.+.
T Consensus 182 ~l~~~~---~~~l~~L~~L~l~~n~l~~l~-----~~~~L~~L~ls~n~l~ 224 (597)
T 3oja_B 182 RLTHVD---LSLIPSLFHANVSYNLLSTLA-----IPIAVEELDASHNSIN 224 (597)
T ss_dssp CCSBCC---GGGCTTCSEEECCSSCCSEEE-----CCTTCSEEECCSSCCC
T ss_pred CCCCcC---hhhhhhhhhhhcccCcccccc-----CCchhheeeccCCccc
Confidence 999875 456789999999999988764 3568999999999875
No 47
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.91 E-value=6.2e-24 Score=190.00 Aligned_cols=115 Identities=32% Similarity=0.585 Sum_probs=106.2
Q ss_pred CCCCCC--cccc--CceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCC
Q psy12210 95 PSCPHP--CRCA--DGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQG 170 (405)
Q Consensus 95 ~~~p~~--~~c~--~~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~ 170 (405)
..||.+ |+|. .+.++|++++++++|..+++.++.|++++|.++.+++..|.++++|++|++++|.++.+.+..|.+
T Consensus 2 ~~Cp~~~gC~C~~~~~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 81 (251)
T 3m19_A 2 KTCETVTGCTCNEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDD 81 (251)
T ss_dssp --CHHHHSSEEEGGGTEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred ccCCCCCceEcCCCCeEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhcc
Confidence 468988 9993 489999999999999999999999999999999999988999999999999999999999888999
Q ss_pred CCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccc
Q psy12210 171 LKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFI 209 (405)
Q Consensus 171 l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~ 209 (405)
+++|++|++++|.++.+++..|..+++|+.|++++|.+.
T Consensus 82 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 120 (251)
T 3m19_A 82 LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK 120 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCC
Confidence 999999999999999999999999999999999998743
No 48
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.91 E-value=2.5e-23 Score=210.43 Aligned_cols=113 Identities=29% Similarity=0.436 Sum_probs=103.4
Q ss_pred CCCCcccc--CceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCC
Q psy12210 97 CPHPCRCA--DGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSL 174 (405)
Q Consensus 97 ~p~~~~c~--~~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L 174 (405)
++..|.|. ...++|++.+++++|..+|.++++|+|++|.|+.+++.+|.++++|+.|++++|.++.+++++|.++++|
T Consensus 23 ~~~~c~~~~~~~~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L 102 (635)
T 4g8a_A 23 SWEPCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 102 (635)
T ss_dssp --CCSEEEETTTEEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred CCCCccccCCCCEEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCC
Confidence 34456553 4789999999999999999999999999999999999899999999999999999999999999999999
Q ss_pred CEEEccCCcCcccChhhhhcccCCcEEEeecCccc
Q psy12210 175 TSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFI 209 (405)
Q Consensus 175 ~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~ 209 (405)
++|++++|+++.+++++|.++++|+.|++++|.+.
T Consensus 103 ~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~ 137 (635)
T 4g8a_A 103 STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 137 (635)
T ss_dssp CEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCC
T ss_pred CEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCC
Confidence 99999999999999999999999999999999876
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.91 E-value=3.1e-24 Score=201.77 Aligned_cols=270 Identities=16% Similarity=0.208 Sum_probs=156.2
Q ss_pred cccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccCC
Q psy12210 3 RTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSG 82 (405)
Q Consensus 3 L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~ 82 (405)
.++++++++.+|... .++|+.|++++|.+++..+ .........+.+++++|.+..++...|....
T Consensus 36 c~~~~~~l~~iP~~~---~~~L~~L~l~~n~i~~~~~------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (353)
T 2z80_A 36 CKGSSGSLNSIPSGL---TEAVKSLDLSNNRITYISN------------SDLQRCVNLQALVLTSNGINTIEEDSFSSLG 100 (353)
T ss_dssp EECCSTTCSSCCTTC---CTTCCEEECTTSCCCEECT------------TTTTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred eeCCCCCcccccccc---cccCcEEECCCCcCcccCH------------HHhccCCCCCEEECCCCccCccCHhhcCCCC
Confidence 467888899988753 3578999999988863111 0011111123344444444444433332111
Q ss_pred CCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCCC-C--CCCccEEEccCCCCCCCCc-ccccCCCCCcEEecCCC
Q psy12210 83 PVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPIL-L--PEATTELRLEQNDITELPP-KAFANYKRLRRIDLSKN 158 (405)
Q Consensus 83 ~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~~-~--~~~L~~L~L~~n~i~~l~~-~~~~~l~~L~~L~ls~n 158 (405)
. ++++++++|.++.+|.. + .++|++|++++|.++.++. ..|.++++|+.|++++|
T Consensus 101 ~---------------------L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n 159 (353)
T 2z80_A 101 S---------------------LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNM 159 (353)
T ss_dssp T---------------------CCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEES
T ss_pred C---------------------CCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCC
Confidence 0 15555555555555532 1 2355555555555555554 34555555555555555
Q ss_pred -cceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCC
Q psy12210 159 -QISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPS 237 (405)
Q Consensus 159 -~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 237 (405)
.+..+++..|.++++|++|++++|.++.+.+..|..+++|+.|++++|.+.
T Consensus 160 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~---------------------------- 211 (353)
T 2z80_A 160 DTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI---------------------------- 211 (353)
T ss_dssp SSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST----------------------------
T ss_pred ccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc----------------------------
Confidence 345554455555555555555555555554445555555555555555422
Q ss_pred CCCCCcccccCCCcccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCC
Q psy12210 238 HIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVP 317 (405)
Q Consensus 238 ~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p 317 (405)
.++...+... .+++.|++++|.++.++
T Consensus 212 --------~~~~~~~~~~---------------------------------------------~~L~~L~L~~n~l~~~~ 238 (353)
T 2z80_A 212 --------LLLEIFVDVT---------------------------------------------SSVECLELRDTDLDTFH 238 (353)
T ss_dssp --------THHHHHHHHT---------------------------------------------TTEEEEEEESCBCTTCC
T ss_pred --------cchhhhhhhc---------------------------------------------ccccEEECCCCcccccc
Confidence 1111111000 15788888888888765
Q ss_pred CCC------CCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCc
Q psy12210 318 ILL------PEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDIT 389 (405)
Q Consensus 318 ~~~------~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~ 389 (405)
... ...++.++++ +.+.+.. +..+ +..+..+++ +.|+|++|+|+.++...|.++++|+.|+|++|.++
T Consensus 239 ~~~l~~~~~~~~l~~l~L~~~~l~~~~---l~~l-~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 239 FSELSTGETNSLIKKFTFRNVKITDES---LFQV-MKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp CC------CCCCCCEEEEESCBCCHHH---HHHH-HHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccccccccccchhhccccccccccCcc---hhhh-HHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCcc
Confidence 332 3467778888 7665421 1111 356888999 99999999999999988899999999999999988
Q ss_pred ccCh
Q psy12210 390 ELPP 393 (405)
Q Consensus 390 ~i~~ 393 (405)
.-.+
T Consensus 315 ~~~~ 318 (353)
T 2z80_A 315 CSCP 318 (353)
T ss_dssp CCHH
T ss_pred CcCC
Confidence 6543
No 50
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=1.3e-23 Score=196.95 Aligned_cols=273 Identities=18% Similarity=0.188 Sum_probs=187.6
Q ss_pred ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210 2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS 81 (405)
Q Consensus 2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~ 81 (405)
.|++++|+|+++++ |.++++|++|++++|.+++.. . .......+.++++++.+.+++. +...
T Consensus 70 ~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~-------------~-~~~l~~L~~L~l~~n~i~~~~~--~~~l 131 (347)
T 4fmz_A 70 YLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDIS-------------A-LQNLTNLRELYLNEDNISDISP--LANL 131 (347)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG-------------G-GTTCTTCSEEECTTSCCCCCGG--GTTC
T ss_pred EEEccCCccccchh--hhcCCcCCEEEccCCcccCch-------------H-HcCCCcCCEEECcCCcccCchh--hccC
Confidence 68999999999887 899999999999999987421 1 1112234567778888777654 2111
Q ss_pred CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCc-cccCC-CCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCc
Q psy12210 82 GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGL-NKVPI-LLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQ 159 (405)
Q Consensus 82 ~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l-~~lp~-~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~ 159 (405)
. .++.+++++|.. ..++. .-.++++.|++++|.+..+++ +..+++|++|++++|.
T Consensus 132 ~---------------------~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~ 188 (347)
T 4fmz_A 132 T---------------------KMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ 188 (347)
T ss_dssp T---------------------TCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSC
T ss_pred C---------------------ceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCc
Confidence 1 127777777743 33332 113577888888888877765 6777888888888888
Q ss_pred ceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCC
Q psy12210 160 ISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHI 239 (405)
Q Consensus 160 l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 239 (405)
+..+.+ +..+++|+.+++++|.+..+++ +..+++|+.|++++|.+..... ......+....+
T Consensus 189 l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--------------~~~l~~L~~L~l 250 (347)
T 4fmz_A 189 IEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--------------LANLSQLTWLEI 250 (347)
T ss_dssp CCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--------------GTTCTTCCEEEC
T ss_pred cccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--------------hhcCCCCCEEEC
Confidence 877754 6777888888888888777765 6777888888888877541100 001111111122
Q ss_pred CCCcccccCCCcccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCC-
Q psy12210 240 KGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPI- 318 (405)
Q Consensus 240 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~- 318 (405)
.++.+..++ .+... .+|++|++++|.++.++.
T Consensus 251 ~~n~l~~~~----------------------------------------~~~~l-------~~L~~L~l~~n~l~~~~~~ 283 (347)
T 4fmz_A 251 GTNQISDIN----------------------------------------AVKDL-------TKLKMLNVGSNQISDISVL 283 (347)
T ss_dssp CSSCCCCCG----------------------------------------GGTTC-------TTCCEEECCSSCCCCCGGG
T ss_pred CCCccCCCh----------------------------------------hHhcC-------CCcCEEEccCCccCCChhh
Confidence 222222210 01111 169999999999998863
Q ss_pred CCCCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcc
Q psy12210 319 LLPEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITE 390 (405)
Q Consensus 319 ~~~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~ 390 (405)
...++++.|+++ |.+...+ +..++++++ +.|++++|+++.+++ +..+++|+.|++++|.|++
T Consensus 284 ~~l~~L~~L~L~~n~l~~~~--------~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~~ 347 (347)
T 4fmz_A 284 NNLSQLNSLFLNNNQLGNED--------MEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIKK 347 (347)
T ss_dssp GGCTTCSEEECCSSCCCGGG--------HHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC----
T ss_pred cCCCCCCEEECcCCcCCCcC--------hhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhcccC
Confidence 235799999999 9999887 778999999 999999999999987 7889999999999999864
No 51
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=1.9e-23 Score=209.03 Aligned_cols=262 Identities=21% Similarity=0.230 Sum_probs=191.1
Q ss_pred ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210 2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS 81 (405)
Q Consensus 2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~ 81 (405)
.|++++|+|+.+|...+ ++|+.|++++|.|+. ++. .......+++++|.++.++. .+.
T Consensus 44 ~L~ls~n~L~~lp~~l~---~~L~~L~L~~N~l~~-------------lp~---~l~~L~~L~Ls~N~l~~lp~-~l~-- 101 (622)
T 3g06_A 44 VLNVGESGLTTLPDCLP---AHITTLVIPDNNLTS-------------LPA---LPPELRTLEVSGNQLTSLPV-LPP-- 101 (622)
T ss_dssp EEECCSSCCSCCCSCCC---TTCSEEEECSCCCSC-------------CCC---CCTTCCEEEECSCCCSCCCC-CCT--
T ss_pred EEEecCCCcCccChhhC---CCCcEEEecCCCCCC-------------CCC---cCCCCCEEEcCCCcCCcCCC-CCC--
Confidence 58999999999987543 799999999999872 222 12334556777787777765 111
Q ss_pred CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcce
Q psy12210 82 GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQIS 161 (405)
Q Consensus 82 ~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~ 161 (405)
.++.+++++|.++.+|. .+++++.|++++|.++.++.. +++|+.|++++|.++
T Consensus 102 ----------------------~L~~L~Ls~N~l~~l~~-~l~~L~~L~L~~N~l~~lp~~----l~~L~~L~Ls~N~l~ 154 (622)
T 3g06_A 102 ----------------------GLLELSIFSNPLTHLPA-LPSGLCKLWIFGNQLTSLPVL----PPGLQELSVSDNQLA 154 (622)
T ss_dssp ----------------------TCCEEEECSCCCCCCCC-CCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCS
T ss_pred ----------------------CCCEEECcCCcCCCCCC-CCCCcCEEECCCCCCCcCCCC----CCCCCEEECcCCcCC
Confidence 13888888888888887 567888888888888887753 478888888888888
Q ss_pred eecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCC
Q psy12210 162 KVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKG 241 (405)
Q Consensus 162 ~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 241 (405)
.++. .+.+|+.|++++|.++.++ ..+++|+.|++++|.+... +. ....+..+
T Consensus 155 ~l~~----~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~l~~l-------------~~---~~~~L~~L---- 206 (622)
T 3g06_A 155 SLPA----LPSELCKLWAYNNQLTSLP----MLPSGLQELSVSDNQLASL-------------PT---LPSELYKL---- 206 (622)
T ss_dssp CCCC----CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCC-------------CC---CCTTCCEE----
T ss_pred CcCC----ccCCCCEEECCCCCCCCCc----ccCCCCcEEECCCCCCCCC-------------CC---ccchhhEE----
Confidence 7653 3467888888888888887 3467888888888875410 00 00011111
Q ss_pred CcccccCCCcccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCCC
Q psy12210 242 QNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLP 321 (405)
Q Consensus 242 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~~ 321 (405)
.+.++.+..++.. ..+|+.|++++|.++.+| ..+
T Consensus 207 ----------------------------------~L~~N~l~~l~~~-----------~~~L~~L~Ls~N~L~~lp-~~l 240 (622)
T 3g06_A 207 ----------------------------------WAYNNRLTSLPAL-----------PSGLKELIVSGNRLTSLP-VLP 240 (622)
T ss_dssp ----------------------------------ECCSSCCSSCCCC-----------CTTCCEEECCSSCCSCCC-CCC
T ss_pred ----------------------------------ECcCCcccccCCC-----------CCCCCEEEccCCccCcCC-CCC
Confidence 1222233322211 026999999999999998 566
Q ss_pred CCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcccChhhcCCC
Q psy12210 322 EATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANY 399 (405)
Q Consensus 322 ~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l 399 (405)
++|+.|+++ |.|+.++ . .+++ +.|+|++|+|+.++. .|.++++|+.|+|++|.+++..+..|..+
T Consensus 241 ~~L~~L~Ls~N~L~~lp--------~----~~~~L~~L~Ls~N~L~~lp~-~l~~l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 241 SELKELMVSGNRLTSLP--------M----LPSGLLSLSVYRNQLTRLPE-SLIHLSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp TTCCEEECCSSCCSCCC--------C----CCTTCCEEECCSSCCCSCCG-GGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred CcCcEEECCCCCCCcCC--------c----ccccCcEEeCCCCCCCcCCH-HHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence 899999999 9999998 3 5677 999999999999975 48899999999999999998776655443
No 52
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.91 E-value=2.5e-23 Score=189.64 Aligned_cols=178 Identities=24% Similarity=0.342 Sum_probs=134.6
Q ss_pred CCccEEEccCCCCCCCCcccccCCCCCcEEecCCCc-ceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEE
Q psy12210 124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQ-ISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLR 202 (405)
Q Consensus 124 ~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~ 202 (405)
+++++|++++|.++.+.+..|.++++|++|++++|. ++.+.+..|..+++|++|++++|.++.+++..|..+++|+.|+
T Consensus 56 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 135 (285)
T 1ozn_A 56 RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY 135 (285)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEE
Confidence 467888888888888777778888888888888886 7777777788888888888888888888777778888888888
Q ss_pred eecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCccccccccceecccccCCCCCCCCCC
Q psy12210 203 ISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPV 282 (405)
Q Consensus 203 l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 282 (405)
+++|.+. .++...+...
T Consensus 136 l~~n~l~------------------------------------~~~~~~~~~l--------------------------- 152 (285)
T 1ozn_A 136 LQDNALQ------------------------------------ALPDDTFRDL--------------------------- 152 (285)
T ss_dssp CCSSCCC------------------------------------CCCTTTTTTC---------------------------
T ss_pred CCCCccc------------------------------------ccCHhHhccC---------------------------
Confidence 8887643 2222222111
Q ss_pred CCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCC---CCCceEEEEE-ecceeeeccchhccccccccCCcc-ceE
Q psy12210 283 EKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILL---PEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSR 357 (405)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~---~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L 357 (405)
.+|++|++++|.++.+|... .++++.|+++ |.+.++. +..|..+++ +.|
T Consensus 153 ------------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------~~~~~~l~~L~~L 206 (285)
T 1ozn_A 153 ------------------GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH--------PHAFRDLGRLMTL 206 (285)
T ss_dssp ------------------TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC--------TTTTTTCTTCCEE
T ss_pred ------------------CCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccC--------HhHccCcccccEe
Confidence 04778888888888777543 3578888888 8888886 677888888 888
Q ss_pred EecCCCCcccCcccccCCccCceeecccCCCcc
Q psy12210 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITE 390 (405)
Q Consensus 358 ~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~ 390 (405)
++++|+|+.+++..|..+++|+.|+|++|.+..
T Consensus 207 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 207 YLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp ECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred eCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 888888888888778888888888888887763
No 53
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=8.7e-23 Score=198.12 Aligned_cols=305 Identities=13% Similarity=0.090 Sum_probs=180.2
Q ss_pred ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210 2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS 81 (405)
Q Consensus 2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~ 81 (405)
.|++++|+|++++ .|+.+++|++|++++|.+++. + .......+.+++++|.+..++ +...
T Consensus 46 ~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~-------------~--~~~l~~L~~L~Ls~N~l~~~~---~~~l 105 (457)
T 3bz5_A 46 SLDCHNSSITDMT--GIEKLTGLTKLICTSNNITTL-------------D--LSQNTNLTYLACDSNKLTNLD---VTPL 105 (457)
T ss_dssp EEECCSSCCCCCT--TGGGCTTCSEEECCSSCCSCC-------------C--CTTCTTCSEEECCSSCCSCCC---CTTC
T ss_pred EEEccCCCcccCh--hhcccCCCCEEEccCCcCCeE-------------c--cccCCCCCEEECcCCCCceee---cCCC
Confidence 5889999999885 488999999999999998741 1 111122445667777776654 1111
Q ss_pred CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCC-cc
Q psy12210 82 GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKN-QI 160 (405)
Q Consensus 82 ~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n-~l 160 (405)
. .++.+++++|.++.+|..-.++++.|++++|.++.++ ++++++|++|++++| .+
T Consensus 106 ~---------------------~L~~L~L~~N~l~~l~~~~l~~L~~L~l~~N~l~~l~---l~~l~~L~~L~l~~n~~~ 161 (457)
T 3bz5_A 106 T---------------------KLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKI 161 (457)
T ss_dssp T---------------------TCCEEECCSSCCSCCCCTTCTTCCEEECTTSCCSCCC---CTTCTTCCEEECTTCSCC
T ss_pred C---------------------cCCEEECCCCcCCeecCCCCCcCCEEECCCCccceec---cccCCcCCEEECCCCCcc
Confidence 0 1377888888887777444567888888888888764 667778888888877 34
Q ss_pred eeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCC
Q psy12210 161 SKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIK 240 (405)
Q Consensus 161 ~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 240 (405)
..+ .+..+++|+.|++++|.++.++ +..+++|+.|++++|.+... .......+....+.
T Consensus 162 ~~~---~~~~l~~L~~L~ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~~---------------~l~~l~~L~~L~Ls 220 (457)
T 3bz5_A 162 TKL---DVTPQTQLTTLDCSFNKITELD---VSQNKLLNRLNCDTNNITKL---------------DLNQNIQLTFLDCS 220 (457)
T ss_dssp CCC---CCTTCTTCCEEECCSSCCCCCC---CTTCTTCCEEECCSSCCSCC---------------CCTTCTTCSEEECC
T ss_pred ccc---ccccCCcCCEEECCCCccceec---cccCCCCCEEECcCCcCCee---------------ccccCCCCCEEECc
Confidence 333 3667778888888888887775 56677788888887776521 11112223333444
Q ss_pred CCcccccCCCcccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCC-CcCCCC
Q psy12210 241 GQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGL-NKVPIL 319 (405)
Q Consensus 241 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l-~~~p~~ 319 (405)
++.+..++...+ .......++.+.+...+...+..+..-.....+++.+++++|.+ ..+|..
T Consensus 221 ~N~l~~ip~~~l-----------------~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~ 283 (457)
T 3bz5_A 221 SNKLTEIDVTPL-----------------TQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAE 283 (457)
T ss_dssp SSCCSCCCCTTC-----------------TTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECT
T ss_pred CCcccccCcccc-----------------CCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccccc
Confidence 444444331111 11122223333333332111111110000011344444444432 223333
Q ss_pred CCCCceEEEEE-ec-ceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcccC
Q psy12210 320 LPEATTELTYM-VS-IDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELP 392 (405)
Q Consensus 320 ~~~~l~~L~l~-n~-i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~ 392 (405)
..+.++.|+++ |. +..++. ....+..-.+++.++ +.|++++|+|+.++ +..+++|+.|++++|++++++
T Consensus 284 ~l~~L~~L~Ls~n~~l~~l~~-~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~---l~~l~~L~~L~l~~N~l~~l~ 355 (457)
T 3bz5_A 284 GCRKIKELDVTHNTQLYLLDC-QAAGITELDLSQNPKLVYLYLNNTELTELD---VSHNTKLKSLSCVNAHIQDFS 355 (457)
T ss_dssp TCTTCCCCCCTTCTTCCEEEC-TTCCCSCCCCTTCTTCCEEECTTCCCSCCC---CTTCTTCSEEECCSSCCCBCT
T ss_pred ccccCCEEECCCCcccceecc-CCCcceEechhhcccCCEEECCCCcccccc---cccCCcCcEEECCCCCCCCcc
Confidence 34677777777 54 333331 111111223677788 99999999999973 788999999999999998864
No 54
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.91 E-value=5.5e-24 Score=196.63 Aligned_cols=196 Identities=17% Similarity=0.180 Sum_probs=129.0
Q ss_pred ceEEcCCCCcc-ccCCCC--CCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCC-CCCEEEccC
Q psy12210 106 GIVDCREKGLN-KVPILL--PEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLK-SLTSLTLNN 181 (405)
Q Consensus 106 ~~l~~~~n~l~-~lp~~~--~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~-~L~~L~l~~ 181 (405)
+++++++|.++ .+|..+ .++|++|++++|.++...+..+.++++|++|++++|.++...|..+..++ +|+.|++++
T Consensus 104 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~ 183 (313)
T 1ogq_A 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR 183 (313)
T ss_dssp SEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCS
T ss_pred CEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcC
Confidence 56666666665 455433 25677777777777755555667777777777777777755556666666 777777777
Q ss_pred CcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCccccc
Q psy12210 182 NNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMET 261 (405)
Q Consensus 182 n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~ 261 (405)
|.++...+..|..+. |+.|++++|.+. ......+...
T Consensus 184 N~l~~~~~~~~~~l~-L~~L~Ls~N~l~------------------------------------~~~~~~~~~l------ 220 (313)
T 1ogq_A 184 NRLTGKIPPTFANLN-LAFVDLSRNMLE------------------------------------GDASVLFGSD------ 220 (313)
T ss_dssp SEEEEECCGGGGGCC-CSEEECCSSEEE------------------------------------ECCGGGCCTT------
T ss_pred CeeeccCChHHhCCc-ccEEECcCCccc------------------------------------CcCCHHHhcC------
Confidence 777655555566665 777777776643 1111111110
Q ss_pred cccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCC--CCCceEEEEE-ecceeeec
Q psy12210 262 RSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILL--PEATTELTYM-VSIDRVDK 338 (405)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~--~~~l~~L~l~-n~i~~i~~ 338 (405)
.+|+.|++++|.++..+..+ .+++++|+++ |++.+..
T Consensus 221 ---------------------------------------~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~- 260 (313)
T 1ogq_A 221 ---------------------------------------KNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTL- 260 (313)
T ss_dssp ---------------------------------------SCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECC-
T ss_pred ---------------------------------------CCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcC-
Confidence 15788888888887554332 4678888888 8887554
Q ss_pred cchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCC-CcccC
Q psy12210 339 VLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQND-ITELP 392 (405)
Q Consensus 339 ~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~-l~~i~ 392 (405)
+..|..+++ +.|+|++|+++...+.. ..+++|+.+++++|. +.+.|
T Consensus 261 -------p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 261 -------PQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp -------CGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred -------ChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence 577888888 88888888888555443 678888888888887 55543
No 55
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.90 E-value=3.6e-23 Score=205.96 Aligned_cols=197 Identities=17% Similarity=0.172 Sum_probs=125.1
Q ss_pred CCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcccCh---hhhhcccCCcEEEeecCccccccCchHHHHHHhhcC
Q psy12210 149 RLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPD---GVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYP 225 (405)
Q Consensus 149 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~---~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~ 225 (405)
+|+.|++++|.+..++...+..+++|++|++++|.++...+ ..++.+++|+.|++++|.+.. +... .
T Consensus 311 ~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~------~~~~----~ 380 (549)
T 2z81_A 311 KVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRS------MQKT----G 380 (549)
T ss_dssp TCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCC------HHHH----H
T ss_pred cceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccc------cccc----h
Confidence 34455555555554443333456777777777777765331 225566777777777776542 1100 0
Q ss_pred CCCCccccCCCCCCCCCcccccCCCcccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCce
Q psy12210 226 RLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGI 305 (405)
Q Consensus 226 ~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~ 305 (405)
........+...++.++.+..++.... .........++++.+..+++... .++++
T Consensus 381 ~~~~~l~~L~~L~Ls~N~l~~lp~~~~---------------~~~~L~~L~Ls~N~l~~l~~~~~----------~~L~~ 435 (549)
T 2z81_A 381 EILLTLKNLTSLDISRNTFHPMPDSCQ---------------WPEKMRFLNLSSTGIRVVKTCIP----------QTLEV 435 (549)
T ss_dssp HHGGGCTTCCEEECTTCCCCCCCSCCC---------------CCTTCCEEECTTSCCSCCCTTSC----------TTCSE
T ss_pred hhhhcCCCCCEEECCCCCCccCChhhc---------------ccccccEEECCCCCcccccchhc----------CCceE
Confidence 001112233334455555554443211 11122334455555554443211 26999
Q ss_pred eecCCCCCCcCCCCCCCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeec
Q psy12210 306 VDCREKGLNKVPILLPEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRL 383 (405)
Q Consensus 306 l~l~~n~l~~~p~~~~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 383 (405)
|++++|+++.++ ...+.+++|+++ |+++.++ . ...+++ +.|+|++|+|+.+++..|..+++|+.|+|
T Consensus 436 L~Ls~N~l~~~~-~~l~~L~~L~Ls~N~l~~ip--------~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l 504 (549)
T 2z81_A 436 LDVSNNNLDSFS-LFLPRLQELYISRNKLKTLP--------D--ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWL 504 (549)
T ss_dssp EECCSSCCSCCC-CCCTTCCEEECCSSCCSSCC--------C--GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEEC
T ss_pred EECCCCChhhhc-ccCChhcEEECCCCccCcCC--------C--cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEe
Confidence 999999999876 345789999999 9999988 3 356888 99999999999999999999999999999
Q ss_pred ccCCCccc
Q psy12210 384 EQNDITEL 391 (405)
Q Consensus 384 ~~N~l~~i 391 (405)
++|.+..-
T Consensus 505 ~~N~~~~~ 512 (549)
T 2z81_A 505 HTNPWDCS 512 (549)
T ss_dssp CSSCBCCC
T ss_pred cCCCccCC
Confidence 99997653
No 56
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=4.9e-23 Score=200.89 Aligned_cols=182 Identities=18% Similarity=0.202 Sum_probs=80.1
Q ss_pred ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210 2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS 81 (405)
Q Consensus 2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~ 81 (405)
+|+++++.++.++. +..+++|++|++++|.+++..++ ........+.++++.+..++. .....
T Consensus 50 ~L~l~~~~i~~l~~--~~~l~~L~~L~Ls~n~l~~~~~~--------------~~l~~L~~L~l~~n~l~~~~~-~~~l~ 112 (466)
T 1o6v_A 50 TLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDITPL--------------KNLTKLVDILMNNNQIADITP-LANLT 112 (466)
T ss_dssp EEECCSSCCCCCTT--GGGCTTCCEEECCSSCCCCCGGG--------------TTCTTCCEEECCSSCCCCCGG-GTTCT
T ss_pred EEecCCCCCccCcc--hhhhcCCCEEECCCCccCCchhh--------------hccccCCEEECCCCccccChh-hcCCC
Confidence 45666777766654 56677777777777766542220 001112333444444444432 11111
Q ss_pred CCCCCCCCCCCCCCCCCCCccc-cCceEEcCCCCccccCC-CCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCc
Q psy12210 82 GPVEKPTGECAAEPSCPHPCRC-ADGIVDCREKGLNKVPI-LLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQ 159 (405)
Q Consensus 82 ~~~~~~~~~~~~~~~~p~~~~c-~~~~l~~~~n~l~~lp~-~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~ 159 (405)
.+....+..+......+ ...+ .++.+++++|.++.+|. .-.++++.|+++ +.+..+++ +.++++|+.|++++|.
T Consensus 113 ~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~-~~~~~~~~--~~~l~~L~~L~l~~n~ 188 (466)
T 1o6v_A 113 NLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSNK 188 (466)
T ss_dssp TCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEE-ESCCCCGG--GTTCTTCCEEECCSSC
T ss_pred CCCEEECCCCCCCCChH-HcCCCCCCEEECCCCccCCChhhccCCcccEeecC-CcccCchh--hccCCCCCEEECcCCc
Confidence 22222222222221111 2222 23777777777666553 112344444443 23333322 4444444444444444
Q ss_pred ceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCcc
Q psy12210 160 ISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSF 208 (405)
Q Consensus 160 l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l 208 (405)
++.+. .+..+++|++|++++|.+..+++ ++.+++|+.|++++|.+
T Consensus 189 l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l 233 (466)
T 1o6v_A 189 VSDIS--VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL 233 (466)
T ss_dssp CCCCG--GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred CCCCh--hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCc
Confidence 44432 24444444444444444444433 33444444444444443
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.90 E-value=2.4e-23 Score=191.70 Aligned_cols=241 Identities=17% Similarity=0.230 Sum_probs=180.8
Q ss_pred ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210 2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS 81 (405)
Q Consensus 2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~ 81 (405)
.++.++++++.+|... .++|+.|++++|.++ .++...|...
T Consensus 11 ~l~c~~~~l~~ip~~~---~~~l~~L~L~~n~l~------------------------------------~i~~~~~~~l 51 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGI---PSSATRLELESNKLQ------------------------------------SLPHGVFDKL 51 (306)
T ss_dssp EEECCSSCCSSCCSCC---CTTCCEEECCSSCCC------------------------------------CCCTTTTTTC
T ss_pred EEEcCCCCcccCCCCC---CCCCCEEECCCCccC------------------------------------ccCHhHhhcc
Confidence 4678888899988743 368899999998875 2222222111
Q ss_pred CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCcccc---CCCC--CCCccEEEccCCCCCCCCcccccCCCCCcEEecC
Q psy12210 82 GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKV---PILL--PEATTELRLEQNDITELPPKAFANYKRLRRIDLS 156 (405)
Q Consensus 82 ~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~l---p~~~--~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls 156 (405)
. .++.+++++|.++.+ |..+ .+++++|++++|.++.++.. +.++++|+.|+++
T Consensus 52 ~---------------------~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~-~~~l~~L~~L~l~ 109 (306)
T 2z66_A 52 T---------------------QLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQ 109 (306)
T ss_dssp T---------------------TCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECT
T ss_pred c---------------------cCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhh-cCCCCCCCEEECC
Confidence 0 126777777777654 2211 36889999999998887764 7888999999999
Q ss_pred CCcceeecc-cccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCC
Q psy12210 157 KNQISKVAV-DAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFA 235 (405)
Q Consensus 157 ~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~ 235 (405)
+|.++.+++ ..+..+++|++|++++|.+..+.+..|..+++|+.|++++|.+..
T Consensus 110 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------------------------- 164 (306)
T 2z66_A 110 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE------------------------- 164 (306)
T ss_dssp TSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG-------------------------
T ss_pred CCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc-------------------------
Confidence 999988875 578888999999999999988888888888999999999887540
Q ss_pred CCCCCCCcccccCCCcccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCc
Q psy12210 236 PSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNK 315 (405)
Q Consensus 236 ~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~ 315 (405)
......+... .+|++|++++|.++.
T Consensus 165 ----------~~~~~~~~~l---------------------------------------------~~L~~L~Ls~n~l~~ 189 (306)
T 2z66_A 165 ----------NFLPDIFTEL---------------------------------------------RNLTFLDLSQCQLEQ 189 (306)
T ss_dssp ----------GEECSCCTTC---------------------------------------------TTCCEEECTTSCCCE
T ss_pred ----------ccchhHHhhC---------------------------------------------cCCCEEECCCCCcCC
Confidence 0011111100 158899999999988
Q ss_pred CCCCC---CCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCc-cCceeecccCCCc
Q psy12210 316 VPILL---PEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYK-RLRRIRLEQNDIT 389 (405)
Q Consensus 316 ~p~~~---~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~-~L~~L~L~~N~l~ 389 (405)
++... .+++++|+++ |++.+++ +..+..+++ +.|+|++|+|+.+.+..+..++ +|+.|+|++|.++
T Consensus 190 ~~~~~~~~l~~L~~L~L~~N~l~~~~--------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 190 LSPTAFNSLSSLQVLNMSHNNFFSLD--------TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCSBCC--------SGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred cCHHHhcCCCCCCEEECCCCccCccC--------hhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 85443 3688999999 9999888 667888999 9999999999998888888884 8999999999987
Q ss_pred cc
Q psy12210 390 EL 391 (405)
Q Consensus 390 ~i 391 (405)
.-
T Consensus 262 ~~ 263 (306)
T 2z66_A 262 CT 263 (306)
T ss_dssp CS
T ss_pred cc
Confidence 53
No 58
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.90 E-value=3.9e-23 Score=180.92 Aligned_cols=195 Identities=29% Similarity=0.500 Sum_probs=166.8
Q ss_pred ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210 2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS 81 (405)
Q Consensus 2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~ 81 (405)
.+++++++++.+|... .++++.|++++|.|++ ++...|...
T Consensus 15 ~v~c~~~~l~~iP~~l---~~~l~~L~l~~n~i~~------------------------------------i~~~~~~~l 55 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNL---PETITEIRLEQNTIKV------------------------------------IPPGAFSPY 55 (220)
T ss_dssp EEECTTSCCSSCCSSC---CTTCCEEECCSSCCCE------------------------------------ECTTSSTTC
T ss_pred EEEcCCCCcCcCCCcc---CcCCCEEECCCCcCCC------------------------------------cCHhHhhCC
Confidence 4788999999998753 3789999999999862 222222111
Q ss_pred CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccC-CCCC--CCccEEEccCCCCCCCCcccccCCCCCcEEecCCC
Q psy12210 82 GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVP-ILLP--EATTELRLEQNDITELPPKAFANYKRLRRIDLSKN 158 (405)
Q Consensus 82 ~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp-~~~~--~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n 158 (405)
. .++.+++++|.++.++ ..+. ++|++|++++|.|+.+++..|.++++|+.|++++|
T Consensus 56 ~---------------------~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 114 (220)
T 2v9t_B 56 K---------------------KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNAN 114 (220)
T ss_dssp T---------------------TCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred C---------------------CCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCC
Confidence 1 1278888888888874 3442 68999999999999999988999999999999999
Q ss_pred cceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCC
Q psy12210 159 QISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSH 238 (405)
Q Consensus 159 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 238 (405)
.++.+.+..|.++++|+.|++++|.++.++++.|..+++|+.|++++|++.|+|.+.|+..|+...+.......|..|..
T Consensus 115 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l~~l~~~l~~~~~~~~~~~C~~P~~ 194 (220)
T 2v9t_B 115 KINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKWLADYLHTNPIETSGARCTSPRR 194 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCCBCSCCBEEESGG
T ss_pred CCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCccHHHHHHHHhCCCCccCCCcCCchH
Confidence 99999999999999999999999999999999999999999999999999999999999999998887777788999999
Q ss_pred CCCCcccccCCCcccccC
Q psy12210 239 IKGQNILDIPEHEFKCSG 256 (405)
Q Consensus 239 l~~~~l~~l~~~~~~~~~ 256 (405)
+.+..+.++....+.|..
T Consensus 195 l~g~~l~~l~~~~~~c~~ 212 (220)
T 2v9t_B 195 LANKRIGQIKSKKFRCSA 212 (220)
T ss_dssp GTTCBGGGSCGGGCCC--
T ss_pred HcCCchhhCCHHHCcCcc
Confidence 999999999999998764
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.90 E-value=7.7e-24 Score=196.05 Aligned_cols=200 Identities=16% Similarity=0.111 Sum_probs=118.6
Q ss_pred ceEEcCCCCccccCC-CCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcC
Q psy12210 106 GIVDCREKGLNKVPI-LLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNL 184 (405)
Q Consensus 106 ~~l~~~~n~l~~lp~-~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l 184 (405)
+.+++++|.++.++. .-.++|++|++++|.++.++. .++|+.|++++|.++.+++.. +++|++|++++|.+
T Consensus 61 ~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~~-----~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l 132 (317)
T 3o53_A 61 ELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKI 132 (317)
T ss_dssp CEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEEE-----CTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCC
T ss_pred CEEECCCCcCCcchhhhhcCCCCEEECcCCccccccC-----CCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCC
Confidence 455555555544332 112466666666666665442 256666777777666665432 45566777777777
Q ss_pred cccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCcccccccc
Q psy12210 185 TYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSK 264 (405)
Q Consensus 185 ~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~ 264 (405)
+.+++..|..+++|+.|++++|.+. .+....+...
T Consensus 133 ~~~~~~~~~~l~~L~~L~Ls~N~l~------------------------------------~~~~~~~~~~--------- 167 (317)
T 3o53_A 133 TMLRDLDEGCRSRVQYLDLKLNEID------------------------------------TVNFAELAAS--------- 167 (317)
T ss_dssp CSGGGBCTGGGSSEEEEECTTSCCC------------------------------------EEEGGGGGGG---------
T ss_pred CCccchhhhccCCCCEEECCCCCCC------------------------------------cccHHHHhhc---------
Confidence 6666666666667777777666543 1111111000
Q ss_pred ceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCC-CCCceEEEEE-ecceeeeccchh
Q psy12210 265 IYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILL-PEATTELTYM-VSIDRVDKVLLY 342 (405)
Q Consensus 265 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~-~~~l~~L~l~-n~i~~i~~~~~~ 342 (405)
..++++|++++|.++.++... .+++++|+++ |++++++
T Consensus 168 -----------------------------------l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~----- 207 (317)
T 3o53_A 168 -----------------------------------SDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMG----- 207 (317)
T ss_dssp -----------------------------------TTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEEC-----
T ss_pred -----------------------------------cCcCCEEECCCCcCcccccccccccCCEEECCCCcCCcch-----
Confidence 004666777777776665433 4667777777 7777766
Q ss_pred ccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCc-ccChhhcCCCcccc
Q psy12210 343 SYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDIT-ELPPKAFANYKRLR 403 (405)
Q Consensus 343 ~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~-~i~~~~f~~l~~L~ 403 (405)
+ .+..+++ +.|+|++|+|+.++.. +..+++|+.|+|++|.++ +..+..+..+++|+
T Consensus 208 ---~-~~~~l~~L~~L~L~~N~l~~l~~~-~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~ 265 (317)
T 3o53_A 208 ---P-EFQSAAGVTWISLRNNKLVLIEKA-LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ 265 (317)
T ss_dssp ---G-GGGGGTTCSEEECTTSCCCEECTT-CCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHH
T ss_pred ---h-hhcccCcccEEECcCCcccchhhH-hhcCCCCCEEEccCCCccCcCHHHHHhccccce
Confidence 3 3666777 7777777777777653 666777777777777776 44444555555554
No 60
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.90 E-value=4.5e-22 Score=192.96 Aligned_cols=303 Identities=20% Similarity=0.223 Sum_probs=202.0
Q ss_pred ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210 2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS 81 (405)
Q Consensus 2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~ 81 (405)
.|++++|+++++|. + .++|+.|++++|.+++. +.. ....+.+++++|.+..++... .
T Consensus 75 ~L~l~~~~l~~lp~--~--~~~L~~L~l~~n~l~~l-------------p~~---~~~L~~L~l~~n~l~~l~~~~---~ 131 (454)
T 1jl5_A 75 ELELNNLGLSSLPE--L--PPHLESLVASCNSLTEL-------------PEL---PQSLKSLLVDNNNLKALSDLP---P 131 (454)
T ss_dssp EEECTTSCCSCCCS--C--CTTCSEEECCSSCCSSC-------------CCC---CTTCCEEECCSSCCSCCCSCC---T
T ss_pred EEEecCCccccCCC--C--cCCCCEEEccCCcCCcc-------------ccc---cCCCcEEECCCCccCcccCCC---C
Confidence 47888888888776 2 46788888888888741 111 122334455555555544321 1
Q ss_pred CCCCCCCCCCCCCCCCCCCcccc-CceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcc
Q psy12210 82 GPVEKPTGECAAEPSCPHPCRCA-DGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQI 160 (405)
Q Consensus 82 ~~~~~~~~~~~~~~~~p~~~~c~-~~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l 160 (405)
......++.+.... -|..+.+. ++++++++|.++.+|... .++++|++++|.++.++ .+.++++|+.|++++|.+
T Consensus 132 ~L~~L~L~~n~l~~-lp~~~~l~~L~~L~l~~N~l~~lp~~~-~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~N~l 207 (454)
T 1jl5_A 132 LLEYLGVSNNQLEK-LPELQNSSFLKIIDVDNNSLKKLPDLP-PSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSL 207 (454)
T ss_dssp TCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSCCSCCCCCC-TTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCC
T ss_pred CCCEEECcCCCCCC-CcccCCCCCCCEEECCCCcCcccCCCc-ccccEEECcCCcCCcCc--cccCCCCCCEEECCCCcC
Confidence 12222233332222 23344433 499999999999888654 58999999999999987 489999999999999999
Q ss_pred eeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCC
Q psy12210 161 SKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIK 240 (405)
Q Consensus 161 ~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 240 (405)
+.++. ..++|++|++++|.++.++. |..+++|+.|++++|.+... +. ....+....+.
T Consensus 208 ~~l~~----~~~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~l~~N~l~~l-------------~~---~~~~L~~L~l~ 265 (454)
T 1jl5_A 208 KKLPD----LPLSLESIVAGNNILEELPE--LQNLPFLTTIYADNNLLKTL-------------PD---LPPSLEALNVR 265 (454)
T ss_dssp SSCCC----CCTTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSSCCSSC-------------CS---CCTTCCEEECC
T ss_pred CcCCC----CcCcccEEECcCCcCCcccc--cCCCCCCCEEECCCCcCCcc-------------cc---cccccCEEECC
Confidence 88653 23589999999999998884 78899999999999987521 00 01222333344
Q ss_pred CCcccccCCCcccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCC
Q psy12210 241 GQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILL 320 (405)
Q Consensus 241 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~ 320 (405)
++.+..++... .......++.+.++.++... .+++.|++++|.++.++ ..
T Consensus 266 ~N~l~~l~~~~------------------~~L~~L~ls~N~l~~l~~~~-----------~~L~~L~l~~N~l~~i~-~~ 315 (454)
T 1jl5_A 266 DNYLTDLPELP------------------QSLTFLDVSENIFSGLSELP-----------PNLYYLNASSNEIRSLC-DL 315 (454)
T ss_dssp SSCCSCCCCCC------------------TTCCEEECCSSCCSEESCCC-----------TTCCEEECCSSCCSEEC-CC
T ss_pred CCcccccCccc------------------CcCCEEECcCCccCcccCcC-----------CcCCEEECcCCcCCccc-CC
Confidence 44444433210 11122234444444432110 26889999999998876 34
Q ss_pred CCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcccC--hhhc
Q psy12210 321 PEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELP--PKAF 396 (405)
Q Consensus 321 ~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~--~~~f 396 (405)
++++++|+++ |++.+++ . .+++ +.|++++|+++.++. .+++|+.|++++|++++++ +..+
T Consensus 316 ~~~L~~L~Ls~N~l~~lp--------~----~~~~L~~L~L~~N~l~~lp~----~l~~L~~L~L~~N~l~~l~~ip~~l 379 (454)
T 1jl5_A 316 PPSLEELNVSNNKLIELP--------A----LPPRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPLREFPDIPESV 379 (454)
T ss_dssp CTTCCEEECCSSCCSCCC--------C----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCCCCCTTC
T ss_pred cCcCCEEECCCCcccccc--------c----cCCcCCEEECCCCccccccc----hhhhccEEECCCCCCCcCCCChHHH
Confidence 5789999999 9999887 2 2577 999999999999886 3789999999999999844 3446
Q ss_pred CCC
Q psy12210 397 ANY 399 (405)
Q Consensus 397 ~~l 399 (405)
..+
T Consensus 380 ~~L 382 (454)
T 1jl5_A 380 EDL 382 (454)
T ss_dssp CEE
T ss_pred Hhh
Confidence 555
No 61
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.89 E-value=2.9e-22 Score=195.46 Aligned_cols=90 Identities=20% Similarity=0.307 Sum_probs=72.3
Q ss_pred cCceeecCCCCCCcCCC-CCCCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccC
Q psy12210 302 ADGIVDCREKGLNKVPI-LLPEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRL 378 (405)
Q Consensus 302 ~l~~l~l~~n~l~~~p~-~~~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L 378 (405)
+|+.|++++|.++.++. ...++|+.|+++ |++.+++ + +..+++ +.|++++|+++.++ .+..+++|
T Consensus 288 ~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~--------~--~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L 355 (466)
T 1o6v_A 288 ALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS--------P--VSSLTKLQRLFFYNNKVSDVS--SLANLTNI 355 (466)
T ss_dssp TCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCG--------G--GGGCTTCCEEECCSSCCCCCG--GGTTCTTC
T ss_pred ccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCch--------h--hccCccCCEeECCCCccCCch--hhccCCCC
Confidence 68888888888887754 234788889998 8888876 3 678888 99999999998884 48889999
Q ss_pred ceeecccCCCcccChhhcCCCccccCC
Q psy12210 379 RRIRLEQNDITELPPKAFANYKRLRRM 405 (405)
Q Consensus 379 ~~L~L~~N~l~~i~~~~f~~l~~L~~L 405 (405)
+.|++++|+++++++ +..+++|++|
T Consensus 356 ~~L~l~~n~l~~~~~--~~~l~~L~~L 380 (466)
T 1o6v_A 356 NWLSAGHNQISDLTP--LANLTRITQL 380 (466)
T ss_dssp CEEECCSSCCCBCGG--GTTCTTCCEE
T ss_pred CEEeCCCCccCccch--hhcCCCCCEE
Confidence 999999999988876 6777777653
No 62
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.89 E-value=1.6e-22 Score=176.96 Aligned_cols=115 Identities=55% Similarity=0.926 Sum_probs=109.4
Q ss_pred CCCCCCccccCceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCC
Q psy12210 95 PSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSL 174 (405)
Q Consensus 95 ~~~p~~~~c~~~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L 174 (405)
..||..|+|..+.++|++++++++|..+++.++.|++++|.|+.+++..|..+++|+.|++++|.++.+.+..|.++++|
T Consensus 3 ~~CP~~C~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L 82 (220)
T 2v9t_B 3 LHCPAACTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL 82 (220)
T ss_dssp CCSCTTSEEETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSC
T ss_pred CCCCCCCEECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCC
Confidence 57999999999999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred CEEEccCCcCcccChhhhhcccCCcEEEeecCccc
Q psy12210 175 TSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFI 209 (405)
Q Consensus 175 ~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~ 209 (405)
++|++++|.++.+++++|..+++|+.|++++|.+.
T Consensus 83 ~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~ 117 (220)
T 2v9t_B 83 NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN 117 (220)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEECCCCcCCccCHhHccCCCCCCEEECCCCCCC
Confidence 99999999999999999999999999999998743
No 63
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=3.8e-22 Score=182.13 Aligned_cols=193 Identities=23% Similarity=0.290 Sum_probs=168.3
Q ss_pred CceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcC
Q psy12210 105 DGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNL 184 (405)
Q Consensus 105 ~~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l 184 (405)
.+.++|++++++++|..+++.++.|++++|.++.+++..|.++++|+.|++++|.++.+++. ..+++|+.|++++|.+
T Consensus 12 l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l 89 (290)
T 1p9a_G 12 HLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQL 89 (290)
T ss_dssp CCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSCC
T ss_pred ccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCcC
Confidence 49999999999999999999999999999999999988999999999999999999998754 7899999999999999
Q ss_pred cccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCcccccccc
Q psy12210 185 TYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSK 264 (405)
Q Consensus 185 ~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~ 264 (405)
+.++. .+..+++|+.|++++|.+. .++...|...
T Consensus 90 ~~l~~-~~~~l~~L~~L~l~~N~l~------------------------------------~l~~~~~~~l--------- 123 (290)
T 1p9a_G 90 QSLPL-LGQTLPALTVLDVSFNRLT------------------------------------SLPLGALRGL--------- 123 (290)
T ss_dssp SSCCC-CTTTCTTCCEEECCSSCCC------------------------------------CCCSSTTTTC---------
T ss_pred CcCch-hhccCCCCCEEECCCCcCc------------------------------------ccCHHHHcCC---------
Confidence 99986 5788999999999999753 3333333211
Q ss_pred ceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCCC---CCceEEEEE-ecceeeeccc
Q psy12210 265 IYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLP---EATTELTYM-VSIDRVDKVL 340 (405)
Q Consensus 265 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~~---~~l~~L~l~-n~i~~i~~~~ 340 (405)
.+|++|++++|+++.+|...+ ++|+.|+++ |+++.++
T Consensus 124 ------------------------------------~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~--- 164 (290)
T 1p9a_G 124 ------------------------------------GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP--- 164 (290)
T ss_dssp ------------------------------------TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC---
T ss_pred ------------------------------------CCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccC---
Confidence 159999999999999987664 689999999 9999999
Q ss_pred hhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcc
Q psy12210 341 LYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITE 390 (405)
Q Consensus 341 ~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~ 390 (405)
+..|.++++ +.|+|++|+|+.++...+ .+++|+.|+|++|.+.-
T Consensus 165 -----~~~~~~l~~L~~L~L~~N~l~~ip~~~~-~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 165 -----AGLLNGLENLDTLLLQENSLYTIPKGFF-GSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp -----TTTTTTCTTCCEEECCSSCCCCCCTTTT-TTCCCSEEECCSCCBCC
T ss_pred -----HHHhcCcCCCCEEECCCCcCCccChhhc-ccccCCeEEeCCCCccC
Confidence 778899999 999999999999998755 46899999999998763
No 64
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.89 E-value=6.9e-22 Score=191.65 Aligned_cols=78 Identities=22% Similarity=0.395 Sum_probs=51.3
Q ss_pred cCceeecCCCCCCcCCCCCCCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccC--cccccCC--
Q psy12210 302 ADGIVDCREKGLNKVPILLPEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELP--PKAFANY-- 375 (405)
Q Consensus 302 ~l~~l~l~~n~l~~~p~~~~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~--~~~~~~l-- 375 (405)
++++|++++|+++.+|.. ++++++|+++ |+++.++ . .+++ +.|++++|+++.++ +..+..+
T Consensus 318 ~L~~L~Ls~N~l~~lp~~-~~~L~~L~L~~N~l~~lp--------~----~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~ 384 (454)
T 1jl5_A 318 SLEELNVSNNKLIELPAL-PPRLERLIASFNHLAEVP--------E----LPQNLKQLHVEYNPLREFPDIPESVEDLRM 384 (454)
T ss_dssp TCCEEECCSSCCSCCCCC-CTTCCEEECCSSCCSCCC--------C----CCTTCCEEECCSSCCSSCCCCCTTCCEEEC
T ss_pred cCCEEECCCCcccccccc-CCcCCEEECCCCcccccc--------c----hhhhccEEECCCCCCCcCCCChHHHHhhhh
Confidence 699999999999998765 5899999999 9999988 3 4677 99999999999843 3556666
Q ss_pred -----------ccCceeecccCCCcccC
Q psy12210 376 -----------KRLRRIRLEQNDITELP 392 (405)
Q Consensus 376 -----------~~L~~L~L~~N~l~~i~ 392 (405)
++|+.|++++|.+++++
T Consensus 385 n~~~~~i~~~~~~L~~L~ls~N~l~~~~ 412 (454)
T 1jl5_A 385 NSHLAEVPELPQNLKQLHVETNPLREFP 412 (454)
T ss_dssp CC--------------------------
T ss_pred cccccccccccCcCCEEECCCCcCCccc
Confidence 88999999999999964
No 65
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.88 E-value=9.9e-23 Score=192.01 Aligned_cols=117 Identities=30% Similarity=0.510 Sum_probs=110.8
Q ss_pred CCCCCCCCccccCceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCccccc-CCCCCcEEecCCCcceeecccccCCC
Q psy12210 93 AEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFA-NYKRLRRIDLSKNQISKVAVDAFQGL 171 (405)
Q Consensus 93 ~~~~~p~~~~c~~~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~-~l~~L~~L~ls~n~l~~~~~~~~~~l 171 (405)
....||..|.|..+.++|++++++++|..++..++.|++++|.|+.+++..|. ++++|+.|++++|.++.+++..|.++
T Consensus 8 ~~~~Cp~~C~C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l 87 (361)
T 2xot_A 8 SVVSCPANCLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPV 87 (361)
T ss_dssp CCTTCCTTCEEETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred cCCCCCCCCEECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCC
Confidence 45689999999999999999999999999999999999999999999998887 99999999999999999999999999
Q ss_pred CCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccc
Q psy12210 172 KSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFI 209 (405)
Q Consensus 172 ~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~ 209 (405)
++|++|++++|.++.+++..|..+++|+.|++++|.+.
T Consensus 88 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~ 125 (361)
T 2xot_A 88 PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV 125 (361)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCccc
Confidence 99999999999999999999999999999999999754
No 66
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.88 E-value=1.7e-22 Score=175.36 Aligned_cols=113 Identities=35% Similarity=0.652 Sum_probs=106.8
Q ss_pred CCCCccccCceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCE
Q psy12210 97 CPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTS 176 (405)
Q Consensus 97 ~p~~~~c~~~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~ 176 (405)
||..|.|..+.++|++++++++|..+++++++|++++|.++.+++..|.++++|++|++++|.++.+++..|..+++|++
T Consensus 1 Cp~~C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 80 (208)
T 2o6s_A 1 CPSRCSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTY 80 (208)
T ss_dssp CCTTCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CcCCCEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCE
Confidence 89999999999999999999999999999999999999999999988999999999999999999998888899999999
Q ss_pred EEccCCcCcccChhhhhcccCCcEEEeecCccc
Q psy12210 177 LTLNNNNLTYLPDGVFAELFRLRTLRISENSFI 209 (405)
Q Consensus 177 L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~ 209 (405)
|++++|.++.+++..|..+++|+.|++++|.+.
T Consensus 81 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 113 (208)
T 2o6s_A 81 LNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ 113 (208)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EECCCCcCCccCHhHhcCccCCCEEEcCCCcCc
Confidence 999999999999988899999999999988743
No 67
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.88 E-value=3.9e-22 Score=170.72 Aligned_cols=161 Identities=33% Similarity=0.705 Sum_probs=129.2
Q ss_pred CCCCCCccccCceEEcCCCCccccCCCCCCCc-----------------------cEEEccCCCCCCCCcccccCCCCCc
Q psy12210 95 PSCPHPCRCADGIVDCREKGLNKVPILLPEAT-----------------------TELRLEQNDITELPPKAFANYKRLR 151 (405)
Q Consensus 95 ~~~p~~~~c~~~~l~~~~n~l~~lp~~~~~~L-----------------------~~L~L~~n~i~~l~~~~~~~l~~L~ 151 (405)
..||..|+|..+.++|++++++++|..+++++ +.|++++|.|+.+++..|.++++|+
T Consensus 2 ~~CP~~C~C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~ 81 (193)
T 2wfh_A 2 SRCPTECTCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLL 81 (193)
T ss_dssp --CCTTCEEETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCCCCCEeCCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCC
Confidence 46999999999999999999999997665444 4555555555555555566677777
Q ss_pred EEecCCCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCcc
Q psy12210 152 RIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYT 231 (405)
Q Consensus 152 ~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~ 231 (405)
.|++++|.++.+++..|.++++|+.|++++|.++.+++++|..+++|+.|++++|++.|+|.+.|+..|+..........
T Consensus 82 ~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~~~~~~~~~~ 161 (193)
T 2wfh_A 82 TLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEPGIA 161 (193)
T ss_dssp EEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHHSSCCCSCC
T ss_pred EEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCHHHHHHHHhccCCCCCc
Confidence 77777777777777777788888888888888888888888889999999999999999999999999998876666667
Q ss_pred ccCCCCCCCCCcccccCCCccccc
Q psy12210 232 KCFAPSHIKGQNILDIPEHEFKCS 255 (405)
Q Consensus 232 ~~~~~~~l~~~~l~~l~~~~~~~~ 255 (405)
.|..|..+.+..+..++...+.+.
T Consensus 162 ~C~~P~~l~g~~l~~~~~~~~~~~ 185 (193)
T 2wfh_A 162 RCAGPGEMADKLLLTTPSKKFTCA 185 (193)
T ss_dssp BEEESGGGTTCBTTTSCGGGCCC-
T ss_pred CcCCchHHCCCCcccCChHHeeeh
Confidence 899999999999999998877554
No 68
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.88 E-value=5.9e-22 Score=173.38 Aligned_cols=115 Identities=35% Similarity=0.654 Sum_probs=106.8
Q ss_pred CCCCCCccccCceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCc-ccccCCCCCcEEecCCCcceeecccccCCCCC
Q psy12210 95 PSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPP-KAFANYKRLRRIDLSKNQISKVAVDAFQGLKS 173 (405)
Q Consensus 95 ~~~p~~~~c~~~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~-~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~ 173 (405)
..||..|+|..+.++|++|.++++|..++..++.|++++|.++.+++ ..|.++++|+.|++++|.++.+++..|.++++
T Consensus 3 ~~CP~~C~C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~ 82 (220)
T 2v70_A 3 LACPEKCRCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG 82 (220)
T ss_dssp -CCCTTCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred CCCCCCCEECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCC
Confidence 57999999999999999999999999999999999999999999854 56899999999999999999999889999999
Q ss_pred CCEEEccCCcCcccChhhhhcccCCcEEEeecCccc
Q psy12210 174 LTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFI 209 (405)
Q Consensus 174 L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~ 209 (405)
|++|++++|.++.++++.|..+++|+.|++++|.+.
T Consensus 83 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 118 (220)
T 2v70_A 83 VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT 118 (220)
T ss_dssp CCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCC
T ss_pred CCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCC
Confidence 999999999999999999999999999999988743
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=1e-22 Score=199.29 Aligned_cols=90 Identities=11% Similarity=0.070 Sum_probs=52.8
Q ss_pred CceeecCCCCCCcCCCCC-CCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCc
Q psy12210 303 DGIVDCREKGLNKVPILL-PEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLR 379 (405)
Q Consensus 303 l~~l~l~~n~l~~~p~~~-~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~ 379 (405)
|++|++++|.++.+|... .+.|+.|+++ |.+++++ + .+..+++ +.|+|++|+|+.++.. +..+++|+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~--------~-~~~~l~~L~~L~Ls~N~l~~lp~~-l~~l~~L~ 240 (487)
T 3oja_A 171 LEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMG--------P-EFQSAAGVTWISLRNNKLVLIEKA-LRFSQNLE 240 (487)
T ss_dssp CCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEEC--------G-GGGGGTTCSEEECTTSCCCEECTT-CCCCTTCC
T ss_pred ccEEecCCCccccccccccCCCCCEEECCCCCCCCCC--------H-hHcCCCCccEEEecCCcCcccchh-hccCCCCC
Confidence 555555555555554322 3566666666 6666665 2 3666666 7777777777766544 56666777
Q ss_pred eeecccCCCc-ccChhhcCCCccc
Q psy12210 380 RIRLEQNDIT-ELPPKAFANYKRL 402 (405)
Q Consensus 380 ~L~L~~N~l~-~i~~~~f~~l~~L 402 (405)
.|++++|.+. +..+..+..++.|
T Consensus 241 ~L~l~~N~l~c~~~~~~~~~l~~L 264 (487)
T 3oja_A 241 HFDLRGNGFHCGTLRDFFSKNQRV 264 (487)
T ss_dssp EEECTTCCBCHHHHHHHHTTCHHH
T ss_pred EEEcCCCCCcCcchHHHHHhCCCC
Confidence 7777777666 2223345555444
No 70
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.88 E-value=1.7e-21 Score=170.50 Aligned_cols=195 Identities=26% Similarity=0.450 Sum_probs=164.2
Q ss_pred ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210 2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS 81 (405)
Q Consensus 2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~ 81 (405)
++++++|+++.+|... ...++.|++++|.|++.. +...|...
T Consensus 15 ~l~~s~n~l~~iP~~~---~~~~~~L~L~~N~l~~~~-----------------------------------~~~~~~~l 56 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHI---PQYTAELRLNNNEFTVLE-----------------------------------ATGIFKKL 56 (220)
T ss_dssp EEECCSSCCSSCCSCC---CTTCSEEECCSSCCCEEC-----------------------------------CCCCGGGC
T ss_pred EeEeCCCCcccCccCC---CCCCCEEEcCCCcCCccC-----------------------------------chhhhccC
Confidence 5788999999988743 345689999999886210 11112111
Q ss_pred CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCCC-C--CCCccEEEccCCCCCCCCcccccCCCCCcEEecCCC
Q psy12210 82 GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPIL-L--PEATTELRLEQNDITELPPKAFANYKRLRRIDLSKN 158 (405)
Q Consensus 82 ~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~~-~--~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n 158 (405)
. .++.+++++|.++.++.. + .++|++|++++|.++.+++..|.++++|++|++++|
T Consensus 57 ~---------------------~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 115 (220)
T 2v70_A 57 P---------------------QLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSN 115 (220)
T ss_dssp T---------------------TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTS
T ss_pred C---------------------CCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCC
Confidence 1 127888888888888763 3 368999999999999999999999999999999999
Q ss_pred cceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCC
Q psy12210 159 QISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSH 238 (405)
Q Consensus 159 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 238 (405)
.++.+.+..|.++++|+.|++++|.++.+++..|..+++|+.|++++|++.|+|.+.|+..|+...........|..|..
T Consensus 116 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~l~~~~~~~~~~~~~~~C~~P~~ 195 (220)
T 2v70_A 116 RITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAWLGEWLRKKRIVTGNPRCQKPYF 195 (220)
T ss_dssp CCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGHHHHHHHHHSCCBCCCCEEEESGG
T ss_pred cCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchHHHHHHHHhcCccccCCccCCChH
Confidence 99999999999999999999999999999888999999999999999999999999999999988777667778999999
Q ss_pred CCCCcccccCCCccccc
Q psy12210 239 IKGQNILDIPEHEFKCS 255 (405)
Q Consensus 239 l~~~~l~~l~~~~~~~~ 255 (405)
+.+..+.++....+.|.
T Consensus 196 l~g~~l~~l~~~~~~~~ 212 (220)
T 2v70_A 196 LKEIPIQDVAIQDFTCD 212 (220)
T ss_dssp GTTEEGGGSCGGGCCCC
T ss_pred HCCCChhhCCHHHcccc
Confidence 99999999988877665
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.87 E-value=1.9e-21 Score=175.68 Aligned_cols=189 Identities=24% Similarity=0.439 Sum_probs=165.0
Q ss_pred CccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEee
Q psy12210 125 ATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRIS 204 (405)
Q Consensus 125 ~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~ 204 (405)
..+.++++++.++.+|.. +. .+++.|++++|.++.+++..|.++++|++|++++|.++.++.+.|..+++|+.|+++
T Consensus 17 ~~~~l~~~~~~l~~ip~~-~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSN-IP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSSCCSC-CC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCccCCC-CC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 467899999999999864 33 589999999999999998899999999999999999999999999999999999999
Q ss_pred cCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCccccccccceecccccCCCCCCCCCCCC
Q psy12210 205 ENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEK 284 (405)
Q Consensus 205 ~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 284 (405)
+|.+. .++...|...
T Consensus 94 ~n~l~------------------------------------~~~~~~~~~l----------------------------- 108 (270)
T 2o6q_A 94 DNKLQ------------------------------------ALPIGVFDQL----------------------------- 108 (270)
T ss_dssp SSCCC------------------------------------CCCTTTTTTC-----------------------------
T ss_pred CCcCC------------------------------------cCCHhHcccc-----------------------------
Confidence 98743 2332222111
Q ss_pred CCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCC---CCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEe
Q psy12210 285 PTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILL---PEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRL 359 (405)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~---~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L 359 (405)
.+|++|++++|.++.++... .++|++|+++ |.+..++ +..|.++++ +.|+|
T Consensus 109 ----------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--------~~~~~~l~~L~~L~L 164 (270)
T 2o6q_A 109 ----------------VNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLP--------KGVFDKLTSLKELRL 164 (270)
T ss_dssp ----------------SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC--------TTTTTTCTTCCEEEC
T ss_pred ----------------cCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccC--------HhHccCCcccceeEe
Confidence 15999999999999998655 3789999999 9999998 777999999 99999
Q ss_pred cCCCCcccCcccccCCccCceeecccCCCcccChhhcCCCccccCC
Q psy12210 360 EQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405 (405)
Q Consensus 360 ~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L 405 (405)
++|+|+.+++..|.++++|+.|+|++|+++++++..|..+++|++|
T Consensus 165 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 210 (270)
T 2o6q_A 165 YNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKML 210 (270)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred cCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEE
Confidence 9999999999999999999999999999999999889888888754
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.87 E-value=2.3e-21 Score=175.78 Aligned_cols=174 Identities=18% Similarity=0.155 Sum_probs=139.3
Q ss_pred ceEEcCCCCccccCCC-C--CCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCC
Q psy12210 106 GIVDCREKGLNKVPIL-L--PEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNN 182 (405)
Q Consensus 106 ~~l~~~~n~l~~lp~~-~--~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n 182 (405)
+++++++|.++.++.. + .++|++|++++|.++.+++..|.++++|++|++++|.+..+.+..+..+++|++|++++|
T Consensus 55 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 134 (276)
T 2z62_A 55 QVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134 (276)
T ss_dssp SEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS
T ss_pred cEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCC
Confidence 7777888887777653 2 258899999999999888888899999999999999999888777889999999999999
Q ss_pred cCcccC-hhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCccccc
Q psy12210 183 NLTYLP-DGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMET 261 (405)
Q Consensus 183 ~l~~l~-~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~ 261 (405)
.++.+. +..|..+++|+.|++++|.+. .++...+....
T Consensus 135 ~l~~~~l~~~~~~l~~L~~L~Ls~N~l~------------------------------------~~~~~~~~~l~----- 173 (276)
T 2z62_A 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQ------------------------------------SIYCTDLRVLH----- 173 (276)
T ss_dssp CCCCCCCCGGGGGCTTCCEEECCSSCCC------------------------------------EECGGGGHHHH-----
T ss_pred ccceecCchhhccCCCCCEEECCCCCCC------------------------------------cCCHHHhhhhh-----
Confidence 998754 567888999999999998754 22222221110
Q ss_pred cccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCc----eeecCCCCCCcCCCCCC--CCceEEEEE-ecce
Q psy12210 262 RSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADG----IVDCREKGLNKVPILLP--EATTELTYM-VSID 334 (405)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~----~l~l~~n~l~~~p~~~~--~~l~~L~l~-n~i~ 334 (405)
+++ .+++++|.++.++...+ .+++.|+++ |+++
T Consensus 174 ----------------------------------------~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~ 213 (276)
T 2z62_A 174 ----------------------------------------QMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLK 213 (276)
T ss_dssp ----------------------------------------TCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCS
T ss_pred ----------------------------------------hccccceeeecCCCcccccCccccCCCcccEEECCCCcee
Confidence 133 79999999999987665 479999999 9999
Q ss_pred eeeccchhccccccccCCcc-ceEEecCCCCcccC
Q psy12210 335 RVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELP 368 (405)
Q Consensus 335 ~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~ 368 (405)
.++ +..|+.+++ +.|+|++|.++...
T Consensus 214 ~~~--------~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 214 SVP--------DGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp CCC--------TTTTTTCCSCCEEECCSSCBCCCT
T ss_pred ecC--------HhHhcccccccEEEccCCcccccC
Confidence 998 778899999 99999999998543
No 73
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.87 E-value=2.3e-21 Score=165.88 Aligned_cols=162 Identities=36% Similarity=0.769 Sum_probs=127.7
Q ss_pred CCCCCccccCceEEcCCCCccccCCCCCCCccE-------------------------EEccCCCCCCCCcccccCCCCC
Q psy12210 96 SCPHPCRCADGIVDCREKGLNKVPILLPEATTE-------------------------LRLEQNDITELPPKAFANYKRL 150 (405)
Q Consensus 96 ~~p~~~~c~~~~l~~~~n~l~~lp~~~~~~L~~-------------------------L~L~~n~i~~l~~~~~~~l~~L 150 (405)
.||..|.|..+.++|++++++++|..++..++. |++++|.|+.+.+..|.++++|
T Consensus 1 ~CP~~C~C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 80 (192)
T 1w8a_A 1 DCPAMCHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI 80 (192)
T ss_dssp CCCTTSEEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred CcCCCCEECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccC
Confidence 499999999999999999999988766544444 4555555555544455566666
Q ss_pred cEEecCCCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCc
Q psy12210 151 RRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLY 230 (405)
Q Consensus 151 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~ 230 (405)
++|++++|.++.+++..|.++++|++|++++|+++.+.+..|..+++|+.|++++|++.|+|.+.|+..|+.........
T Consensus 81 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~ 160 (192)
T 1w8a_A 81 QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGA 160 (192)
T ss_dssp CEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGG
T ss_pred CEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCC
Confidence 66666666666666666777777778888888888777777888889999999999999999999999998887776677
Q ss_pred cccCCCCCCCCCcccccCCCcccccCc
Q psy12210 231 TKCFAPSHIKGQNILDIPEHEFKCSGS 257 (405)
Q Consensus 231 ~~~~~~~~l~~~~l~~l~~~~~~~~~~ 257 (405)
..|..|..+.+..+..+....+.|...
T Consensus 161 ~~C~~P~~l~~~~l~~l~~~~~~C~~~ 187 (192)
T 1w8a_A 161 ARCGAPSKVRDVQIKDLPHSEFKCSSE 187 (192)
T ss_dssp CBBCSSTTTTTSBGGGSCTTTCCCCCC
T ss_pred CCCCCChHHcCCChhhCcHhhcCcCCC
Confidence 889999999999999999999988743
No 74
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.87 E-value=1.4e-20 Score=182.72 Aligned_cols=200 Identities=17% Similarity=0.168 Sum_probs=111.1
Q ss_pred ceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCc
Q psy12210 106 GIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLT 185 (405)
Q Consensus 106 ~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 185 (405)
+++++++|.++.+|..-.+++++|++++|.++.++ ++++++|++|++++|.++.++ +..+++|++|++++|.++
T Consensus 67 ~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~~N~l~~l~---~~~l~~L~~L~l~~N~l~ 140 (457)
T 3bz5_A 67 TKLICTSNNITTLDLSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKLD---VSQNPLLTYLNCARNTLT 140 (457)
T ss_dssp SEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECCSSCCSCCC---CTTCTTCCEEECTTSCCS
T ss_pred CEEEccCCcCCeEccccCCCCCEEECcCCCCceee---cCCCCcCCEEECCCCcCCeec---CCCCCcCCEEECCCCccc
Confidence 55555555555554333345666666666666553 555566666666666665542 555566666666666666
Q ss_pred ccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCccccccccc
Q psy12210 186 YLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKI 265 (405)
Q Consensus 186 ~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~ 265 (405)
.++ ++.+++|+.|++++|..... ........+....+.++.+..++ +
T Consensus 141 ~l~---l~~l~~L~~L~l~~n~~~~~--------------~~~~~l~~L~~L~ls~n~l~~l~---l------------- 187 (457)
T 3bz5_A 141 EID---VSHNTQLTELDCHLNKKITK--------------LDVTPQTQLTTLDCSFNKITELD---V------------- 187 (457)
T ss_dssp CCC---CTTCTTCCEEECTTCSCCCC--------------CCCTTCTTCCEEECCSSCCCCCC---C-------------
T ss_pred eec---cccCCcCCEEECCCCCcccc--------------cccccCCcCCEEECCCCccceec---c-------------
Confidence 553 44555666666665532100 00000000111111111111111 0
Q ss_pred eecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCCCCCceEEEEE-ecceeeeccchhcc
Q psy12210 266 YREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYM-VSIDRVDKVLLYSY 344 (405)
Q Consensus 266 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~~~~l~~L~l~-n~i~~i~~~~~~~~ 344 (405)
... .+++.|++++|.++.++....+.++.|+++ |++++++
T Consensus 188 -------------------------~~l-------~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~ip------- 228 (457)
T 3bz5_A 188 -------------------------SQN-------KLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEID------- 228 (457)
T ss_dssp -------------------------TTC-------TTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC-------
T ss_pred -------------------------ccC-------CCCCEEECcCCcCCeeccccCCCCCEEECcCCcccccC-------
Confidence 000 158888888888888865556788889988 8888865
Q ss_pred ccccccCCcc-ceEEecCCCCcccCcccccCCc-------cCceeecccCC
Q psy12210 345 ISNNFKRWTN-RSRRLEQNDITELPPKAFANYK-------RLRRIRLEQND 387 (405)
Q Consensus 345 ~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~-------~L~~L~L~~N~ 387 (405)
+..+++ +.|++++|+++.++...+.++. +|+.|++++|.
T Consensus 229 ----~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~ 275 (457)
T 3bz5_A 229 ----VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNT 275 (457)
T ss_dssp ----CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCT
T ss_pred ----ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCc
Confidence 567788 8899999988888755444433 34444444444
No 75
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.87 E-value=7.2e-22 Score=185.32 Aligned_cols=73 Identities=15% Similarity=0.200 Sum_probs=57.4
Q ss_pred cCceeecC-CCCCCcCCCCCC---CCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCC
Q psy12210 302 ADGIVDCR-EKGLNKVPILLP---EATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANY 375 (405)
Q Consensus 302 ~l~~l~l~-~n~l~~~p~~~~---~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l 375 (405)
+++.++++ +|.++.+|...+ ++|+.|+++ |+|+.+| ...|.++++ +.+++ +.++.+|+ +.++
T Consensus 178 ~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp--------~~~~~~L~~L~~l~~--~~l~~lP~--l~~l 245 (350)
T 4ay9_X 178 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP--------SYGLENLKKLRARST--YNLKKLPT--LEKL 245 (350)
T ss_dssp EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCC--------SSSCTTCCEEECTTC--TTCCCCCC--TTTC
T ss_pred chhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccC--------hhhhccchHhhhccC--CCcCcCCC--chhC
Confidence 58888887 578999998765 588999999 9999999 666666655 44333 46888874 7889
Q ss_pred ccCceeecccC
Q psy12210 376 KRLRRIRLEQN 386 (405)
Q Consensus 376 ~~L~~L~L~~N 386 (405)
++|+.++++++
T Consensus 246 ~~L~~l~l~~~ 256 (350)
T 4ay9_X 246 VALMEASLTYP 256 (350)
T ss_dssp CSCCEEECSCH
T ss_pred cChhhCcCCCC
Confidence 99999999864
No 76
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.86 E-value=1.2e-21 Score=181.00 Aligned_cols=233 Identities=19% Similarity=0.213 Sum_probs=184.7
Q ss_pred ccccCCCcCcc--CCchhhccccccceEEccC-CcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCcc
Q psy12210 2 PRTLNNNNLTY--LPDGVFAELFRLRTLRISE-NSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEF 78 (405)
Q Consensus 2 ~L~l~~n~i~~--l~~~~f~~l~~L~~L~l~~-n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~ 78 (405)
.|+|++|+|++ ..+.+|.++++|++|++++ |.+++ .++. .+
T Consensus 54 ~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~-----------------------------------~~p~-~l 97 (313)
T 1ogq_A 54 NLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG-----------------------------------PIPP-AI 97 (313)
T ss_dssp EEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEES-----------------------------------CCCG-GG
T ss_pred EEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccc-----------------------------------cCCh-hH
Confidence 58999999997 5556899999999999995 88752 1111 11
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCC
Q psy12210 79 KCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKN 158 (405)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n 158 (405)
. . .++|++|++++|.++...+..|.++++|++|++++|
T Consensus 98 ~-------------------------------------~-----l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N 135 (313)
T 1ogq_A 98 A-------------------------------------K-----LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN 135 (313)
T ss_dssp G-------------------------------------G-----CTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSS
T ss_pred h-------------------------------------c-----CCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCC
Confidence 0 0 158999999999999666667999999999999999
Q ss_pred cceeecccccCCCCCCCEEEccCCcCcccChhhhhccc-CCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCC
Q psy12210 159 QISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELF-RLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPS 237 (405)
Q Consensus 159 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~-~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 237 (405)
.++...|..|..+++|++|++++|.++...+..+..++ +|+.|++++|.+.
T Consensus 136 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~---------------------------- 187 (313)
T 1ogq_A 136 ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT---------------------------- 187 (313)
T ss_dssp EEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE----------------------------
T ss_pred ccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee----------------------------
Confidence 99987788899999999999999999954445677787 9999999999854
Q ss_pred CCCCCcccccCCCcccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCC
Q psy12210 238 HIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVP 317 (405)
Q Consensus 238 ~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p 317 (405)
...+..+... .|+.|++++|.++..+
T Consensus 188 --------~~~~~~~~~l----------------------------------------------~L~~L~Ls~N~l~~~~ 213 (313)
T 1ogq_A 188 --------GKIPPTFANL----------------------------------------------NLAFVDLSRNMLEGDA 213 (313)
T ss_dssp --------EECCGGGGGC----------------------------------------------CCSEEECCSSEEEECC
T ss_pred --------ccCChHHhCC----------------------------------------------cccEEECcCCcccCcC
Confidence 1111122111 3889999999998765
Q ss_pred CCC---CCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcccC
Q psy12210 318 ILL---PEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELP 392 (405)
Q Consensus 318 ~~~---~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~ 392 (405)
+.. .++++.|+++ |.+.... ..+..+++ +.|+|++|+|+...+..|..+++|+.|+|++|++++..
T Consensus 214 ~~~~~~l~~L~~L~L~~N~l~~~~---------~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i 284 (313)
T 1ogq_A 214 SVLFGSDKNTQKIHLAKNSLAFDL---------GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284 (313)
T ss_dssp GGGCCTTSCCSEEECCSSEECCBG---------GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred CHHHhcCCCCCEEECCCCceeeec---------CcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccC
Confidence 433 3689999999 9998766 34788899 99999999999777778999999999999999999655
Q ss_pred hhhcCCCccccC
Q psy12210 393 PKAFANYKRLRR 404 (405)
Q Consensus 393 ~~~f~~l~~L~~ 404 (405)
+.. ..+++|++
T Consensus 285 p~~-~~l~~L~~ 295 (313)
T 1ogq_A 285 PQG-GNLQRFDV 295 (313)
T ss_dssp CCS-TTGGGSCG
T ss_pred CCC-ccccccCh
Confidence 543 66666654
No 77
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.86 E-value=2.2e-21 Score=162.60 Aligned_cols=132 Identities=36% Similarity=0.721 Sum_probs=124.3
Q ss_pred CCCCCCccccCceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCC
Q psy12210 95 PSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSL 174 (405)
Q Consensus 95 ~~~p~~~~c~~~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L 174 (405)
..||..|.|..+.++|++|+++++|..+++.++.|++++|.|+.+++..|.++++|+.|++++|.++.+++..|.++++|
T Consensus 1 ~~CP~~C~C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L 80 (170)
T 3g39_A 1 MACPSQCSCSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQL 80 (170)
T ss_dssp -CCC-CCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CcCcCcCCcCCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCC
Confidence 36999999999999999999999999999999999999999999999899999999999999999999999889999999
Q ss_pred CEEEccCCcCcccChhhhhcccCCcEEEeecCccccccC-chHHHHHHhhcCC
Q psy12210 175 TSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCH-LSWLHRWLKRYPR 226 (405)
Q Consensus 175 ~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~-l~~~~~~~~~~~~ 226 (405)
++|++++|+++.+++++|..+++|+.|++++|++.|+|. +.++..|+...+.
T Consensus 81 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~l~~l~~~l~~~~~ 133 (170)
T 3g39_A 81 TQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWISQHPG 133 (170)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBGGGHHHHHHHHHCGG
T ss_pred CEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCchhHHHHHHHHHhCcc
Confidence 999999999999999999999999999999999999995 9999999887654
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.86 E-value=5.2e-21 Score=174.53 Aligned_cols=187 Identities=21% Similarity=0.358 Sum_probs=149.1
Q ss_pred ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210 2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS 81 (405)
Q Consensus 2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~ 81 (405)
.|+|++|+|+++++.+|.++++|+.|++++|.+++.. .. ......+.+++++|.+..++.......
T Consensus 35 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-------------~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~ 100 (290)
T 1p9a_G 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ-------------VD-GTLPVLGTLDLSHNQLQSLPLLGQTLP 100 (290)
T ss_dssp EEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE-------------CC-SCCTTCCEEECCSSCCSSCCCCTTTCT
T ss_pred EEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCccc-------------CC-CCCCcCCEEECCCCcCCcCchhhccCC
Confidence 4677777777777777777888888888887776311 11 112224456667777766654221100
Q ss_pred CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCCC-C--CCCccEEEccCCCCCCCCcccccCCCCCcEEecCCC
Q psy12210 82 GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPIL-L--PEATTELRLEQNDITELPPKAFANYKRLRRIDLSKN 158 (405)
Q Consensus 82 ~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~~-~--~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n 158 (405)
.++.+++++|+++.+|.. + .++|+.|++++|.++.+++..|..+++|+.|++++|
T Consensus 101 ----------------------~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 101 ----------------------ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp ----------------------TCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred ----------------------CCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 238999999999999864 3 368999999999999999998999999999999999
Q ss_pred cceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcC
Q psy12210 159 QISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYP 225 (405)
Q Consensus 159 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~ 225 (405)
+++.+++..|..+++|+.|++++|+++.++..+|. +.+|+.+++.+|++.|+|.+.++..|+...+
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~-~~~L~~l~L~~Np~~C~c~~~~l~~wl~~~~ 224 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG-SHLLPFAFLHGNPWLCNCEILYFRRWLQDNA 224 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCCCSEEECCSCCBCCSGGGHHHHHHHHHTG
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCCccChhhcc-cccCCeEEeCCCCccCcCccHHHHHHHHhCc
Confidence 99999988899999999999999999999987655 6799999999999999999999999988754
No 79
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.86 E-value=9.3e-22 Score=182.02 Aligned_cols=179 Identities=17% Similarity=0.244 Sum_probs=137.1
Q ss_pred CCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEe
Q psy12210 124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRI 203 (405)
Q Consensus 124 ~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l 203 (405)
++++.|++++|.++.+++ +..+++|++|++++|.++.+++ .++|+.|++++|.++.++... +++|+.|++
T Consensus 58 ~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~-----~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l 127 (317)
T 3o53_A 58 TKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISRVSCSR---GQGKKNIYL 127 (317)
T ss_dssp TTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEE-----CTTCCEEECCSSCCSEEEECC---CSSCEEEEC
T ss_pred CcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccC-----CCCcCEEECCCCccCCcCccc---cCCCCEEEC
Confidence 478888888888877664 7778888888888888877653 267888888888887776543 567888888
Q ss_pred ecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCccccccccceecccccCCCCCCCCCCC
Q psy12210 204 SENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVE 283 (405)
Q Consensus 204 ~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 283 (405)
++|.+. .+....+...
T Consensus 128 ~~N~l~------------------------------------~~~~~~~~~l---------------------------- 143 (317)
T 3o53_A 128 ANNKIT------------------------------------MLRDLDEGCR---------------------------- 143 (317)
T ss_dssp CSSCCC------------------------------------SGGGBCTGGG----------------------------
T ss_pred CCCCCC------------------------------------Cccchhhhcc----------------------------
Confidence 877643 2222222111
Q ss_pred CCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCC-C---CCCceEEEEE-ecceeeeccchhccccccccCCcc-ceE
Q psy12210 284 KPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPIL-L---PEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSR 357 (405)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~-~---~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L 357 (405)
.+|++|++++|.++.++.. + .+.+++|+++ |.++.++ .. ..+++ +.|
T Consensus 144 -----------------~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~--------~~--~~l~~L~~L 196 (317)
T 3o53_A 144 -----------------SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--------GQ--VVFAKLKTL 196 (317)
T ss_dssp -----------------SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--------CC--CCCTTCCEE
T ss_pred -----------------CCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc--------cc--cccccCCEE
Confidence 1599999999999987533 2 3789999999 9999987 32 34888 999
Q ss_pred EecCCCCcccCcccccCCccCceeecccCCCcccChhhcCCCccccCC
Q psy12210 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405 (405)
Q Consensus 358 ~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L 405 (405)
+|++|+|+.+++. |..+++|+.|+|++|++++++.. +..+++|++|
T Consensus 197 ~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~l~~~-~~~l~~L~~L 242 (317)
T 3o53_A 197 DLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKA-LRFSQNLEHF 242 (317)
T ss_dssp ECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTT-CCCCTTCCEE
T ss_pred ECCCCcCCcchhh-hcccCcccEEECcCCcccchhhH-hhcCCCCCEE
Confidence 9999999999887 88899999999999999999864 7888877754
No 80
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.86 E-value=2.8e-20 Score=186.09 Aligned_cols=86 Identities=17% Similarity=0.191 Sum_probs=74.2
Q ss_pred cCceeecCCCCCCcCCCCCCCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCc
Q psy12210 302 ADGIVDCREKGLNKVPILLPEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLR 379 (405)
Q Consensus 302 ~l~~l~l~~n~l~~~p~~~~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~ 379 (405)
+++.|++++|.++.+|. .+++++.|+++ |.+++++ ..+++ +.|+|++|+|+.++. .+++|+
T Consensus 202 ~L~~L~L~~N~l~~l~~-~~~~L~~L~Ls~N~L~~lp------------~~l~~L~~L~Ls~N~L~~lp~----~~~~L~ 264 (622)
T 3g06_A 202 ELYKLWAYNNRLTSLPA-LPSGLKELIVSGNRLTSLP------------VLPSELKELMVSGNRLTSLPM----LPSGLL 264 (622)
T ss_dssp TCCEEECCSSCCSSCCC-CCTTCCEEECCSSCCSCCC------------CCCTTCCEEECCSSCCSCCCC----CCTTCC
T ss_pred hhhEEECcCCcccccCC-CCCCCCEEEccCCccCcCC------------CCCCcCcEEECCCCCCCcCCc----ccccCc
Confidence 69999999999999885 45889999999 9999876 34577 999999999999987 468999
Q ss_pred eeecccCCCcccChhhcCCCccccCC
Q psy12210 380 RIRLEQNDITELPPKAFANYKRLRRM 405 (405)
Q Consensus 380 ~L~L~~N~l~~i~~~~f~~l~~L~~L 405 (405)
.|+|++|+|+.+|. .|.++++|++|
T Consensus 265 ~L~Ls~N~L~~lp~-~l~~l~~L~~L 289 (622)
T 3g06_A 265 SLSVYRNQLTRLPE-SLIHLSSETTV 289 (622)
T ss_dssp EEECCSSCCCSCCG-GGGGSCTTCEE
T ss_pred EEeCCCCCCCcCCH-HHhhccccCEE
Confidence 99999999999976 48888888754
No 81
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=2.8e-21 Score=179.61 Aligned_cols=207 Identities=16% Similarity=0.181 Sum_probs=138.7
Q ss_pred ceEEcCCCCccccCCCCC--CCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCc
Q psy12210 106 GIVDCREKGLNKVPILLP--EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNN 183 (405)
Q Consensus 106 ~~l~~~~n~l~~lp~~~~--~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~ 183 (405)
+.+++++|+++.+|..+. ++|++|++++|.++.++. .+.++++|++|++++|.++.++ ..+..+++|++|++++|.
T Consensus 84 ~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~n~ 161 (328)
T 4fcg_A 84 VALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPD-TMQQFAGLETLTLARNPLRALP-ASIASLNRLRELSIRACP 161 (328)
T ss_dssp CEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCS-CGGGGTTCSEEEEESCCCCCCC-GGGGGCTTCCEEEEEEET
T ss_pred eEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhH-HHhccCCCCEEECCCCccccCc-HHHhcCcCCCEEECCCCC
Confidence 667777777777766543 467777777777775554 4666777777777777776553 456667777777777654
Q ss_pred -CcccChhh--------hhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccc
Q psy12210 184 -LTYLPDGV--------FAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKC 254 (405)
Q Consensus 184 -l~~l~~~~--------f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~ 254 (405)
+..++... |..+++|+.|++++|.+. .++.. +..
T Consensus 162 ~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~------------------------------------~lp~~-l~~ 204 (328)
T 4fcg_A 162 ELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR------------------------------------SLPAS-IAN 204 (328)
T ss_dssp TCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC------------------------------------CCCGG-GGG
T ss_pred CccccChhHhhccchhhhccCCCCCEEECcCCCcC------------------------------------cchHh-hcC
Confidence 33444321 223667777777766532 12211 111
Q ss_pred cCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCC--CCCceEEEEE-e
Q psy12210 255 SGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILL--PEATTELTYM-V 331 (405)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~--~~~l~~L~l~-n 331 (405)
. .+|++|++++|.++.+|..+ .++|++|+++ |
T Consensus 205 l---------------------------------------------~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n 239 (328)
T 4fcg_A 205 L---------------------------------------------QNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGC 239 (328)
T ss_dssp C---------------------------------------------TTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTC
T ss_pred C---------------------------------------------CCCCEEEccCCCCCcCchhhccCCCCCEEECcCC
Confidence 0 15888888888888887654 3688888888 7
Q ss_pred cceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcccChhhcCCCccccC
Q psy12210 332 SIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404 (405)
Q Consensus 332 ~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~ 404 (405)
.+.+.. +..|.++++ +.|+|++|.+....+..|.++++|+.|+|++|.+.+..+..|.++++|++
T Consensus 240 ~~~~~~--------p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~ 305 (328)
T 4fcg_A 240 TALRNY--------PPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCI 305 (328)
T ss_dssp TTCCBC--------CCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCE
T ss_pred cchhhh--------HHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceE
Confidence 776655 577888888 88999888777666666888888999999888866655566888877764
No 82
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=2.1e-20 Score=166.95 Aligned_cols=188 Identities=20% Similarity=0.370 Sum_probs=151.6
Q ss_pred ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210 2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS 81 (405)
Q Consensus 2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~ 81 (405)
.++++++.++.+|... .++++.|++++|.+++..+ .........+.+++++|.+..++...|...
T Consensus 18 ~l~~~~~~l~~~p~~~---~~~l~~L~L~~n~l~~~~~------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 82 (251)
T 3m19_A 18 EVDCQGKSLDSVPSGI---PADTEKLDLQSTGLATLSD------------ATFRGLTKLTWLNLDYNQLQTLSAGVFDDL 82 (251)
T ss_dssp EEECTTCCCSSCCSCC---CTTCCEEECTTSCCCCCCT------------TTTTTCTTCCEEECTTSCCCCCCTTTTTTC
T ss_pred EEecCCCCccccCCCC---CCCCCEEEccCCCcCccCH------------hHhcCcccCCEEECCCCcCCccCHhHhccC
Confidence 4677888888887643 2578888888888764221 111112234556677777777666554322
Q ss_pred CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCCCC---CCCccEEEccCCCCCCCCcccccCCCCCcEEecCCC
Q psy12210 82 GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILL---PEATTELRLEQNDITELPPKAFANYKRLRRIDLSKN 158 (405)
Q Consensus 82 ~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~~~---~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n 158 (405)
.. ++.+++++|.++.+|... .++|+.|++++|.++.+++..|.++++|+.|++++|
T Consensus 83 ~~---------------------L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 141 (251)
T 3m19_A 83 TE---------------------LGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN 141 (251)
T ss_dssp TT---------------------CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred Cc---------------------CCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC
Confidence 21 389999999999998654 368999999999999999988999999999999999
Q ss_pred cceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccc-cCchHHHHHHhhcC
Q psy12210 159 QISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICD-CHLSWLHRWLKRYP 225 (405)
Q Consensus 159 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~-~~l~~~~~~~~~~~ 225 (405)
.++.+++..|..+++|+.|++++|.++.+++..|..+++|+.|++++|++.|+ |++.++..|+....
T Consensus 142 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~~ 209 (251)
T 3m19_A 142 QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIRENS 209 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHHHHSG
T ss_pred cCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccccHHHHHHHHhcc
Confidence 99999988899999999999999999999998999999999999999999999 99999999987654
No 83
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.85 E-value=9.9e-22 Score=181.43 Aligned_cols=194 Identities=11% Similarity=0.103 Sum_probs=139.6
Q ss_pred ceEEcCCCCcc-ccCCCC----CCCccEEEccCCCCCCCCcccccCC-----CCCcEEecCCCcceeecccccCCCCCCC
Q psy12210 106 GIVDCREKGLN-KVPILL----PEATTELRLEQNDITELPPKAFANY-----KRLRRIDLSKNQISKVAVDAFQGLKSLT 175 (405)
Q Consensus 106 ~~l~~~~n~l~-~lp~~~----~~~L~~L~L~~n~i~~l~~~~~~~l-----~~L~~L~ls~n~l~~~~~~~~~~l~~L~ 175 (405)
+.+++++|+++ .+|..+ .++++.|++++|.++.++ ..+..+ ++|++|++++|.+..+++..|.++++|+
T Consensus 98 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 176 (312)
T 1wwl_A 98 QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRD-AWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALS 176 (312)
T ss_dssp CEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSS-SHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCC
T ss_pred cEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchh-HHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCC
Confidence 77777777776 466543 357888888888888873 456655 7888888888888888777788888888
Q ss_pred EEEccCCcCccc---Chh-hhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCc
Q psy12210 176 SLTLNNNNLTYL---PDG-VFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHE 251 (405)
Q Consensus 176 ~L~l~~n~l~~l---~~~-~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~ 251 (405)
+|++++|++... +.. .|..+++|+.|++++|.+.. +..+....
T Consensus 177 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~---------------------------------~~~~~~~~ 223 (312)
T 1wwl_A 177 TLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET---------------------------------PSGVCSAL 223 (312)
T ss_dssp EEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCC---------------------------------HHHHHHHH
T ss_pred EEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcc---------------------------------hHHHHHHH
Confidence 888888876542 211 23677888888888877541 00111111
Q ss_pred ccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCC-CCC---CCCceEE
Q psy12210 252 FKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVP-ILL---PEATTEL 327 (405)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p-~~~---~~~l~~L 327 (405)
+... .+|++|++++|.++..+ ... .+++++|
T Consensus 224 ~~~l---------------------------------------------~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L 258 (312)
T 1wwl_A 224 AAAR---------------------------------------------VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSL 258 (312)
T ss_dssp HHTT---------------------------------------------CCCSEEECTTSCCCSSCCCSCCCCCTTCCEE
T ss_pred HhcC---------------------------------------------CCCCEEECCCCcCCcccchhhhhhcCCCCEE
Confidence 1000 05889999999998865 222 3789999
Q ss_pred EEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCccc
Q psy12210 328 TYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITEL 391 (405)
Q Consensus 328 ~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i 391 (405)
+++ |+++.++ ..+. ++ +.|+|++|+|+.++. +..+++|+.|+|++|++++.
T Consensus 259 ~Ls~N~l~~ip---------~~~~--~~L~~L~Ls~N~l~~~p~--~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 259 NLSFTGLKQVP---------KGLP--AKLSVLDLSYNRLDRNPS--PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp ECTTSCCSSCC---------SSCC--SEEEEEECCSSCCCSCCC--TTTSCEEEEEECTTCTTTCC
T ss_pred ECCCCccChhh---------hhcc--CCceEEECCCCCCCCChh--HhhCCCCCEEeccCCCCCCC
Confidence 999 9999887 3333 67 999999999999954 88999999999999998875
No 84
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=1.6e-20 Score=174.51 Aligned_cols=197 Identities=19% Similarity=0.181 Sum_probs=144.2
Q ss_pred ceEEcCCCCccccCCCC--CCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccC---------CCCCC
Q psy12210 106 GIVDCREKGLNKVPILL--PEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQ---------GLKSL 174 (405)
Q Consensus 106 ~~l~~~~n~l~~lp~~~--~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~---------~l~~L 174 (405)
+++++++|.++.+|..+ .++|++|++++|.++.++. .+.++++|+.|++++|.+....|..+. ++++|
T Consensus 107 ~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L 185 (328)
T 4fcg_A 107 QHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPA-SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNL 185 (328)
T ss_dssp SEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCG-GGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTC
T ss_pred CEEECCCCCccchhHHHhccCCCCEEECCCCccccCcH-HHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCC
Confidence 44555555555555433 2578999999999997765 588899999999998766655555444 48899
Q ss_pred CEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccc
Q psy12210 175 TSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKC 254 (405)
Q Consensus 175 ~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~ 254 (405)
++|++++|.++.++.. +..+++|+.|++++|.+. .++.. +..
T Consensus 186 ~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~N~l~------------------------------------~l~~~-l~~ 227 (328)
T 4fcg_A 186 QSLRLEWTGIRSLPAS-IANLQNLKSLKIRNSPLS------------------------------------ALGPA-IHH 227 (328)
T ss_dssp CEEEEEEECCCCCCGG-GGGCTTCCEEEEESSCCC------------------------------------CCCGG-GGG
T ss_pred CEEECcCCCcCcchHh-hcCCCCCCEEEccCCCCC------------------------------------cCchh-hcc
Confidence 9999999999988764 788999999999998753 12221 111
Q ss_pred cCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcC-CCCC--CCCceEEEEE-
Q psy12210 255 SGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKV-PILL--PEATTELTYM- 330 (405)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~-p~~~--~~~l~~L~l~- 330 (405)
. .+|++|++++|++... |..+ .++|++|+++
T Consensus 228 l---------------------------------------------~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~ 262 (328)
T 4fcg_A 228 L---------------------------------------------PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKD 262 (328)
T ss_dssp C---------------------------------------------TTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTT
T ss_pred C---------------------------------------------CCCCEEECcCCcchhhhHHHhcCCCCCCEEECCC
Confidence 1 1588899998776554 4433 4689999999
Q ss_pred ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcccChh
Q psy12210 331 VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPK 394 (405)
Q Consensus 331 n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~ 394 (405)
|.+.+.. +..+.++++ +.|+|++|.+....|..+.++++|+.+++..+.+..+...
T Consensus 263 n~~~~~~--------p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l~~~ 319 (328)
T 4fcg_A 263 CSNLLTL--------PLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQH 319 (328)
T ss_dssp CTTCCBC--------CTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC----
T ss_pred CCchhhc--------chhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHHHhhh
Confidence 7766554 578999999 9999999987776667799999999999999888777654
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=1.1e-20 Score=167.44 Aligned_cols=188 Identities=18% Similarity=0.315 Sum_probs=158.4
Q ss_pred ceEEcCCCCccccCCC-C--CCCccEEEccCCC-CCCCCcccccCCCCCcEEecCC-CcceeecccccCCCCCCCEEEcc
Q psy12210 106 GIVDCREKGLNKVPIL-L--PEATTELRLEQND-ITELPPKAFANYKRLRRIDLSK-NQISKVAVDAFQGLKSLTSLTLN 180 (405)
Q Consensus 106 ~~l~~~~n~l~~lp~~-~--~~~L~~L~L~~n~-i~~l~~~~~~~l~~L~~L~ls~-n~l~~~~~~~~~~l~~L~~L~l~ 180 (405)
+.+++++|+++.+|.. + .++++.|++++|. ++.+++..|.++++|+.|++++ |.++.+++..|.++++|++|+++
T Consensus 34 ~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~ 113 (239)
T 2xwt_C 34 QTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIF 113 (239)
T ss_dssp CEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEE
T ss_pred cEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCC
Confidence 7788888888887763 3 3689999999997 9999998899999999999999 99999998899999999999999
Q ss_pred CCcCcccChhhhhcccCCc---EEEeecC-ccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccC
Q psy12210 181 NNNLTYLPDGVFAELFRLR---TLRISEN-SFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSG 256 (405)
Q Consensus 181 ~n~l~~l~~~~f~~l~~L~---~L~l~~N-~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~ 256 (405)
+|.++.++. |..+++|+ .|++++| .+ ..++...|...
T Consensus 114 ~n~l~~lp~--~~~l~~L~~L~~L~l~~N~~l------------------------------------~~i~~~~~~~l- 154 (239)
T 2xwt_C 114 NTGLKMFPD--LTKVYSTDIFFILEITDNPYM------------------------------------TSIPVNAFQGL- 154 (239)
T ss_dssp EECCCSCCC--CTTCCBCCSEEEEEEESCTTC------------------------------------CEECTTTTTTT-
T ss_pred CCCCccccc--cccccccccccEEECCCCcch------------------------------------hhcCcccccch-
Confidence 999999886 78889998 9999998 53 33333333211
Q ss_pred ccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCc-eeecCCCCCCcCCCCCC--CCceEEEEE-ec
Q psy12210 257 SSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADG-IVDCREKGLNKVPILLP--EATTELTYM-VS 332 (405)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~-~l~l~~n~l~~~p~~~~--~~l~~L~l~-n~ 332 (405)
.+++ .+++++|+++.+|...+ +.++.|+++ |+
T Consensus 155 --------------------------------------------~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~ 190 (239)
T 2xwt_C 155 --------------------------------------------CNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNK 190 (239)
T ss_dssp --------------------------------------------BSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCT
T ss_pred --------------------------------------------hcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCC
Confidence 1588 99999999999987765 578999999 95
Q ss_pred -ceeeeccchhccccccccCC-cc-ceEEecCCCCcccCcccccCCccCceeecccCC
Q psy12210 333 -IDRVDKVLLYSYISNNFKRW-TN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQND 387 (405)
Q Consensus 333 -i~~i~~~~~~~~~~~~~~~l-~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~ 387 (405)
++.++ +..|.++ ++ +.|++++|+|+.+++. .+++|+.|+++++.
T Consensus 191 ~l~~i~--------~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 191 YLTVID--------KDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp TCCEEC--------TTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred CcccCC--------HHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence 99998 7889999 99 9999999999999876 46788999998763
No 86
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.85 E-value=1.5e-20 Score=158.03 Aligned_cols=133 Identities=29% Similarity=0.664 Sum_probs=125.7
Q ss_pred CCCCCCCccccCceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCC
Q psy12210 94 EPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKS 173 (405)
Q Consensus 94 ~~~~p~~~~c~~~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~ 173 (405)
...||..|+|..+.++|++++++++|..+++++++|++++|.|+.+++..|.++++|+.|++++|.++.+++..|.++++
T Consensus 3 ~~~CP~~C~C~~~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~ 82 (174)
T 2r9u_A 3 SAGCPSQCSCDQTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQ 82 (174)
T ss_dssp CCSSCTTSEECSSEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCCCCCCEECCcEEEeCCCCCCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcch
Confidence 46899999999999999999999999999999999999999999999989999999999999999999999888899999
Q ss_pred CCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccC-chHHHHHHhhcCC
Q psy12210 174 LTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCH-LSWLHRWLKRYPR 226 (405)
Q Consensus 174 L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~-l~~~~~~~~~~~~ 226 (405)
|+.|++++|+++.+++++|..+++|+.|++++|++.|+|. +.++..|+.....
T Consensus 83 L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~~l~~~~~~~~~ 136 (174)
T 2r9u_A 83 LTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLRNWVADHTS 136 (174)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBGGGHHHHHHHHHCGG
T ss_pred hhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccccccHHHHHHHHHhccc
Confidence 9999999999999999889999999999999999999996 9999999876543
No 87
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.84 E-value=6.1e-21 Score=176.13 Aligned_cols=245 Identities=15% Similarity=0.135 Sum_probs=176.1
Q ss_pred ccccCCCcCccCCchhhccccccceEEccCCcccc-cchhhHHHHHHhhCCCccccccccCCCcccCCcccc-cCCCcc-
Q psy12210 2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFIC-DCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILD-IPEHEF- 78 (405)
Q Consensus 2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-l~~~~~- 78 (405)
.|++++|++ .+|.. +... |+.|++++|.++. ..+.......+... .....+.++++++.+.. ++...|
T Consensus 47 ~l~l~~n~l-~~p~~-~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~-----~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 47 YLLKRVDTE-ADLGQ-FTDI--IKSLSLKRLTVRAARIPSRILFGALRVL-----GISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp THHHHCCTT-CCCHH-HHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHH-----TTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred eEeeccccc-ccHHH-HHHH--HhhcccccccccCCCcCHHHHHHHHHhc-----CcCCccEEEccCCcccchhHHHHHH
Confidence 467788888 66654 3333 8888888888843 11111111000000 01123456677777763 443332
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCCCC-------CCCccEEEccCCCCCCCCcccccCCCCCc
Q psy12210 79 KCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILL-------PEATTELRLEQNDITELPPKAFANYKRLR 151 (405)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~~~-------~~~L~~L~L~~n~i~~l~~~~~~~l~~L~ 151 (405)
.... .++.+++++|.++.+|..+ ++++++|++++|.++.+++..|.++++|+
T Consensus 118 ~~l~---------------------~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 176 (312)
T 1wwl_A 118 ATGP---------------------DLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALS 176 (312)
T ss_dssp CCSC---------------------CCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCC
T ss_pred hcCC---------------------CccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCC
Confidence 1111 1399999999999887533 27899999999999999988999999999
Q ss_pred EEecCCCcceeec--cc--ccCCCCCCCEEEccCCcCcc---cChhhhhcccCCcEEEeecCccccccCchHHHHHHhhc
Q psy12210 152 RIDLSKNQISKVA--VD--AFQGLKSLTSLTLNNNNLTY---LPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRY 224 (405)
Q Consensus 152 ~L~ls~n~l~~~~--~~--~~~~l~~L~~L~l~~n~l~~---l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~ 224 (405)
+|++++|.+.+.. +. .+..+++|++|++++|.++. ++...|..+++|+.|++++|.+.
T Consensus 177 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~--------------- 241 (312)
T 1wwl_A 177 TLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLR--------------- 241 (312)
T ss_dssp EEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCC---------------
T ss_pred EEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCC---------------
Confidence 9999999976531 22 23889999999999999994 44456678899999999999865
Q ss_pred CCCCCccccCCCCCCCCCcccccC-CCcccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccC
Q psy12210 225 PRLGLYTKCFAPSHIKGQNILDIP-EHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCAD 303 (405)
Q Consensus 225 ~~~~~~~~~~~~~~l~~~~l~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l 303 (405)
... ...+... .+|
T Consensus 242 ---------------------~~~~~~~~~~l---------------------------------------------~~L 255 (312)
T 1wwl_A 242 ---------------------DAAGAPSCDWP---------------------------------------------SQL 255 (312)
T ss_dssp ---------------------SSCCCSCCCCC---------------------------------------------TTC
T ss_pred ---------------------cccchhhhhhc---------------------------------------------CCC
Confidence 111 1111000 159
Q ss_pred ceeecCCCCCCcCCCCCCCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCccc
Q psy12210 304 GIVDCREKGLNKVPILLPEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITEL 367 (405)
Q Consensus 304 ~~l~l~~n~l~~~p~~~~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i 367 (405)
++|++++|.++.+|..+++++++|+++ |++++++ . +..+++ +.|+|++|+|+..
T Consensus 256 ~~L~Ls~N~l~~ip~~~~~~L~~L~Ls~N~l~~~p---------~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 256 NSLNLSFTGLKQVPKGLPAKLSVLDLSYNRLDRNP---------S-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CEEECTTSCCSSCCSSCCSEEEEEECCSSCCCSCC---------C-TTTSCEEEEEECTTCTTTCC
T ss_pred CEEECCCCccChhhhhccCCceEEECCCCCCCCCh---------h-HhhCCCCCEEeccCCCCCCC
Confidence 999999999999998888999999999 9999988 3 889999 9999999999865
No 88
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.84 E-value=2.4e-20 Score=168.69 Aligned_cols=179 Identities=22% Similarity=0.282 Sum_probs=131.1
Q ss_pred CCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEe
Q psy12210 124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRI 203 (405)
Q Consensus 124 ~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l 203 (405)
+++++|++++|.++.++ .+.++++|++|++++|.++.+++..|.++++|++|++++|.++.+++..|..+++|+.|++
T Consensus 63 ~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 140 (272)
T 3rfs_A 63 PNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL 140 (272)
T ss_dssp TTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEECCCCCCCCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEEC
Confidence 46788888888887764 4778888888888888888887777788888888888888888888777788888888888
Q ss_pred ecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCccccccccceecccccCCCCCCCCCCC
Q psy12210 204 SENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVE 283 (405)
Q Consensus 204 ~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 283 (405)
++|.+. .++...+...
T Consensus 141 ~~n~l~------------------------------------~~~~~~~~~l---------------------------- 156 (272)
T 3rfs_A 141 AHNQLQ------------------------------------SLPKGVFDKL---------------------------- 156 (272)
T ss_dssp CSSCCC------------------------------------CCCTTTTTTC----------------------------
T ss_pred CCCccC------------------------------------ccCHHHhccC----------------------------
Confidence 887643 2222222111
Q ss_pred CCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCC---CCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEE
Q psy12210 284 KPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILL---PEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRR 358 (405)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~---~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~ 358 (405)
.+|++|++++|.++.++... .++++.|+++ |++.+++ +..|..+++ +.|+
T Consensus 157 -----------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--------~~~~~~l~~L~~L~ 211 (272)
T 3rfs_A 157 -----------------TNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP--------DGVFDRLTSLQYIW 211 (272)
T ss_dssp -----------------TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC--------TTTTTTCTTCCEEE
T ss_pred -----------------ccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccC--------HHHHhCCcCCCEEE
Confidence 14778888888888776544 3678888888 8888887 667888888 8888
Q ss_pred ecCCCCcccCcccccCCccCceeecccCCCcccChhhcCCCc
Q psy12210 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYK 400 (405)
Q Consensus 359 L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~ 400 (405)
+++|.+. ..+++|+.+++..|.+++..+..++.+.
T Consensus 212 l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 212 LHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp CCSSCBC-------CCTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred ccCCCcc-------ccCcHHHHHHHHHHhCCCcccCcccccC
Confidence 8888765 2356788888888888766555555544
No 89
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.82 E-value=2.2e-19 Score=157.97 Aligned_cols=113 Identities=37% Similarity=0.650 Sum_probs=104.2
Q ss_pred CCCCCccccCceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCC
Q psy12210 96 SCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLT 175 (405)
Q Consensus 96 ~~p~~~~c~~~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~ 175 (405)
..-..|.|..+.++|++++++++|..+++++++|++++|.|+.+++..|.++++|+.|++++|.++.+++..|.++++|+
T Consensus 12 ~~~~~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~ 91 (229)
T 3e6j_A 12 ACPSQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLT 91 (229)
T ss_dssp CCCTTCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cCCCCCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcC
Confidence 34466789899999999999999999999999999999999999888899999999999999999999888899999999
Q ss_pred EEEccCCcCcccChhhhhcccCCcEEEeecCcc
Q psy12210 176 SLTLNNNNLTYLPDGVFAELFRLRTLRISENSF 208 (405)
Q Consensus 176 ~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l 208 (405)
.|++++|.++.+++..|..+++|+.|++++|.+
T Consensus 92 ~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l 124 (229)
T 3e6j_A 92 VLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL 124 (229)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEECCCCcCCccChhHhCcchhhCeEeccCCcc
Confidence 999999999999998889899999999988874
No 90
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.80 E-value=3.6e-19 Score=163.88 Aligned_cols=169 Identities=24% Similarity=0.346 Sum_probs=99.7
Q ss_pred CCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEe
Q psy12210 124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRI 203 (405)
Q Consensus 124 ~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l 203 (405)
++++.|++++|.++.+++ +..+++|+.|++++|.++.++ .+..+++|++|++++|.++.++. +..+++|+.|++
T Consensus 63 ~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l 136 (308)
T 1h6u_A 63 NNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS--AIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYL 136 (308)
T ss_dssp TTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG--GGTTCTTCCEEECTTSCCCCCGG--GTTCTTCCEEEC
T ss_pred CCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch--hhcCCCCCCEEECCCCCCCCchh--hcCCCCCCEEEC
Confidence 356666666666666554 566666666666666666553 35566666666666666666543 556666666666
Q ss_pred ecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCccccccccceecccccCCCCCCCCCCC
Q psy12210 204 SENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVE 283 (405)
Q Consensus 204 ~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 283 (405)
++|.+. .++. +...
T Consensus 137 ~~n~l~------------------------------------~~~~--l~~l---------------------------- 150 (308)
T 1h6u_A 137 DLNQIT------------------------------------NISP--LAGL---------------------------- 150 (308)
T ss_dssp CSSCCC------------------------------------CCGG--GGGC----------------------------
T ss_pred CCCccC------------------------------------cCcc--ccCC----------------------------
Confidence 666532 0100 1000
Q ss_pred CCCCCCCCCCCCCCCccccCceeecCCCCCCcCCC-CCCCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEec
Q psy12210 284 KPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPI-LLPEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLE 360 (405)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~-~~~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~ 360 (405)
.+|++|++++|.++.++. ...++|+.|+++ |.+++++ + +..+++ +.|+|+
T Consensus 151 -----------------~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~--------~--l~~l~~L~~L~L~ 203 (308)
T 1h6u_A 151 -----------------TNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDIS--------P--LASLPNLIEVHLK 203 (308)
T ss_dssp -----------------TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG--------G--GGGCTTCCEEECT
T ss_pred -----------------CCccEEEccCCcCCCChhhcCCCCCCEEECCCCccCcCh--------h--hcCCCCCCEEEcc
Confidence 035666666666665543 123566666776 6666665 2 566666 777777
Q ss_pred CCCCcccCcccccCCccCceeecccCCCcccCh
Q psy12210 361 QNDITELPPKAFANYKRLRRIRLEQNDITELPP 393 (405)
Q Consensus 361 ~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~ 393 (405)
+|+|+.+++ +..+++|+.|+|++|.++..+.
T Consensus 204 ~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 204 NNQISDVSP--LANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp TSCCCBCGG--GTTCTTCCEEEEEEEEEECCCE
T ss_pred CCccCcccc--ccCCCCCCEEEccCCeeecCCe
Confidence 777776663 6667777777777777666554
No 91
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=3.1e-19 Score=176.54 Aligned_cols=191 Identities=23% Similarity=0.290 Sum_probs=148.8
Q ss_pred CceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcC
Q psy12210 105 DGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNL 184 (405)
Q Consensus 105 ~~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l 184 (405)
.+.+++++|+++.+|..++++++.|++++|.|+.++ ..+++|+.|++++|.++.++. +.+ +|+.|++++|.+
T Consensus 61 L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls~N~l 132 (571)
T 3cvr_A 61 FSELQLNRLNLSSLPDNLPPQITVLEITQNALISLP----ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDVDNNQL 132 (571)
T ss_dssp CSEEECCSSCCSCCCSCCCTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEECCSSCC
T ss_pred ccEEEeCCCCCCccCHhHcCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCcch--hhc--CCCEEECCCCcC
Confidence 489999999999999988899999999999999888 347899999999999999764 654 999999999999
Q ss_pred cccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCcccccccc
Q psy12210 185 TYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSK 264 (405)
Q Consensus 185 ~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~ 264 (405)
+.++. .+++|+.|++++|.+. .++. .+
T Consensus 133 ~~lp~----~l~~L~~L~Ls~N~l~------------------------------------~lp~-~l------------ 159 (571)
T 3cvr_A 133 TMLPE----LPALLEYINADNNQLT------------------------------------MLPE-LP------------ 159 (571)
T ss_dssp SCCCC----CCTTCCEEECCSSCCS------------------------------------CCCC-CC------------
T ss_pred CCCCC----cCccccEEeCCCCccC------------------------------------cCCC-cC------------
Confidence 99886 5799999999999854 1221 00
Q ss_pred ceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCCCCCceEEEEE-ecceeeeccchhc
Q psy12210 265 IYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYM-VSIDRVDKVLLYS 343 (405)
Q Consensus 265 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~~~~l~~L~l~-n~i~~i~~~~~~~ 343 (405)
.+|++|++++|.++.+|. +.++|+.|+++ |.|+.+|.
T Consensus 160 ------------------------------------~~L~~L~Ls~N~L~~lp~-l~~~L~~L~Ls~N~L~~lp~----- 197 (571)
T 3cvr_A 160 ------------------------------------TSLEVLSVRNNQLTFLPE-LPESLEALDVSTNLLESLPA----- 197 (571)
T ss_dssp ------------------------------------TTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSSCCC-----
T ss_pred ------------------------------------CCcCEEECCCCCCCCcch-hhCCCCEEECcCCCCCchhh-----
Confidence 048888888888888887 66788888888 88888872
Q ss_pred cccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcccChhhcCCC
Q psy12210 344 YISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANY 399 (405)
Q Consensus 344 ~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l 399 (405)
+...-+...+. +.|+|++|+|+.+|...+. +++|+.|+|++|.+++..+..|..+
T Consensus 198 ~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~-l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 198 VPVRNHHSEETEIFFRCRENRITHIPENILS-LDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CC--------CCEEEECCSSCCCCCCGGGGG-SCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred HHHhhhcccccceEEecCCCcceecCHHHhc-CCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 00011122244 7888999999988876444 8899999999998887766655544
No 92
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.80 E-value=1.2e-18 Score=157.36 Aligned_cols=176 Identities=24% Similarity=0.363 Sum_probs=152.9
Q ss_pred CCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEe
Q psy12210 124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRI 203 (405)
Q Consensus 124 ~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l 203 (405)
++++.|++.+|.++.++. +..+++|+.|++++|.++.+. .+..+++|++|++++|.++.+++..|..+++|+.|++
T Consensus 41 ~~L~~L~l~~~~i~~~~~--l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp TTCCEEECTTSCCCCCTT--GGGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cceeeeeeCCCCcccccc--cccCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence 589999999999998874 788999999999999999863 6889999999999999999999998999999999999
Q ss_pred ecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCccccccccceecccccCCCCCCCCCCC
Q psy12210 204 SENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVE 283 (405)
Q Consensus 204 ~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 283 (405)
++|.+. .++...+...
T Consensus 117 ~~n~l~------------------------------------~~~~~~~~~l---------------------------- 132 (272)
T 3rfs_A 117 VENQLQ------------------------------------SLPDGVFDKL---------------------------- 132 (272)
T ss_dssp TTSCCC------------------------------------CCCTTTTTTC----------------------------
T ss_pred CCCcCC------------------------------------ccCHHHhccC----------------------------
Confidence 998753 2232222111
Q ss_pred CCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCC---CCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEE
Q psy12210 284 KPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILL---PEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRR 358 (405)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~---~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~ 358 (405)
.+|++|++++|.++.+|... .++|+.|+++ |++++++ +..|+.+++ +.|+
T Consensus 133 -----------------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------~~~~~~l~~L~~L~ 187 (272)
T 3rfs_A 133 -----------------TNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP--------EGVFDKLTQLKDLR 187 (272)
T ss_dssp -----------------TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC--------TTTTTTCTTCCEEE
T ss_pred -----------------CCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccC--------HHHhcCCccCCEEE
Confidence 15999999999999998754 3789999999 9999998 777899999 9999
Q ss_pred ecCCCCcccCcccccCCccCceeecccCCCcccC
Q psy12210 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELP 392 (405)
Q Consensus 359 L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~ 392 (405)
+++|+++.+++..|..+++|+.|+|++|.+....
T Consensus 188 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 221 (272)
T 3rfs_A 188 LYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC 221 (272)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred CCCCcCCccCHHHHhCCcCCCEEEccCCCccccC
Confidence 9999999999998999999999999999887544
No 93
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.80 E-value=1.1e-19 Score=177.77 Aligned_cols=202 Identities=18% Similarity=0.229 Sum_probs=134.5
Q ss_pred CccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEee
Q psy12210 125 ATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRIS 204 (405)
Q Consensus 125 ~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~ 204 (405)
+++.|++++|.++.+++..|..+++|+.|++++|.++++.+ |..+++|+.|++++|.++.+++ .++|+.|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEECc
Confidence 56666666666666666666666666666666666666554 6666666666666666666553 2566666666
Q ss_pred cCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCccccccccceecccccCCCCCCCCCCCC
Q psy12210 205 ENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEK 284 (405)
Q Consensus 205 ~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 284 (405)
+|.+.... ......+..+.+.++.+..+....+...
T Consensus 108 ~N~l~~~~---------------~~~l~~L~~L~L~~N~l~~~~~~~~~~l----------------------------- 143 (487)
T 3oja_A 108 NNNISRVS---------------CSRGQGKKNIYLANNKITMLRDLDEGCR----------------------------- 143 (487)
T ss_dssp SSCCCCEE---------------ECCCSSCEEEECCSSCCCSGGGBCGGGG-----------------------------
T ss_pred CCcCCCCC---------------ccccCCCCEEECCCCCCCCCCchhhcCC-----------------------------
Confidence 66644100 0000111111222222333322222111
Q ss_pred CCCCCCCCCCCCCCccccCceeecCCCCCCcCCC-CC---CCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEE
Q psy12210 285 PTGECAAEPSCPHPCRCADGIVDCREKGLNKVPI-LL---PEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRR 358 (405)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~-~~---~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~ 358 (405)
.+|++|++++|.++.+++ .+ .+.|+.|+++ |.+++++ + +..+++ +.|+
T Consensus 144 ----------------~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~--------~--~~~l~~L~~L~ 197 (487)
T 3oja_A 144 ----------------SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--------G--QVVFAKLKTLD 197 (487)
T ss_dssp ----------------SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--------C--CCCCTTCCEEE
T ss_pred ----------------CCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc--------c--cccCCCCCEEE
Confidence 169999999999998643 33 3799999999 9999987 3 335888 9999
Q ss_pred ecCCCCcccCcccccCCccCceeecccCCCcccChhhcCCCccccCC
Q psy12210 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405 (405)
Q Consensus 359 L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L 405 (405)
|++|+|+.+++. |..+++|+.|+|++|.|+++|.. +..+++|++|
T Consensus 198 Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~~-l~~l~~L~~L 242 (487)
T 3oja_A 198 LSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKA-LRFSQNLEHF 242 (487)
T ss_dssp CCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTT-CCCCTTCCEE
T ss_pred CCCCCCCCCCHh-HcCCCCccEEEecCCcCcccchh-hccCCCCCEE
Confidence 999999999987 88899999999999999999875 7777777653
No 94
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.79 E-value=3e-19 Score=164.63 Aligned_cols=85 Identities=18% Similarity=0.186 Sum_probs=46.6
Q ss_pred CCccEEEccCCCCCCCCcccccCCCCCcEEecCCCccee---ecc-cccCCCCCCCEEEccCCcCcccChh---hhhccc
Q psy12210 124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISK---VAV-DAFQGLKSLTSLTLNNNNLTYLPDG---VFAELF 196 (405)
Q Consensus 124 ~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~---~~~-~~~~~l~~L~~L~l~~n~l~~l~~~---~f~~l~ 196 (405)
+++++|++++|.++.+++..|.++++|+.|++++|.+.+ +.+ ..+..+++|++|++++|.++.++.. .++.++
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~ 224 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV 224 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC
Confidence 356666666666666665556666666666666665543 211 2224555666666666666544432 234455
Q ss_pred CCcEEEeecCcc
Q psy12210 197 RLRTLRISENSF 208 (405)
Q Consensus 197 ~L~~L~l~~N~l 208 (405)
+|+.|++++|.+
T Consensus 225 ~L~~L~Ls~N~l 236 (310)
T 4glp_A 225 QPHSLDLSHNSL 236 (310)
T ss_dssp CCSSEECTTSCC
T ss_pred CCCEEECCCCCC
Confidence 666666665553
No 95
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.77 E-value=1.1e-18 Score=164.37 Aligned_cols=202 Identities=22% Similarity=0.253 Sum_probs=155.4
Q ss_pred ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccc-cccccCCCcccCCcccccCCCcccc
Q psy12210 2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGL-YTKCFAPSHIKGQNILDIPEHEFKC 80 (405)
Q Consensus 2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~l~~~~~~~ 80 (405)
++++++++++.+|... ...++.|+|++|.|++..+ .... .....+.+++++|.+..++...|..
T Consensus 22 ~l~c~~~~l~~iP~~~---~~~l~~L~Ls~N~l~~l~~------------~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~ 86 (361)
T 2xot_A 22 ILSCSKQQLPNVPQSL---PSYTALLDLSHNNLSRLRA------------EWTPTRLTNLHSLLLSHNHLNFISSEAFVP 86 (361)
T ss_dssp EEECCSSCCSSCCSSC---CTTCSEEECCSSCCCEECT------------TSSSSCCTTCCEEECCSSCCCEECTTTTTT
T ss_pred EEEeCCCCcCccCccC---CCCCCEEECCCCCCCccCh------------hhhhhcccccCEEECCCCcCCccChhhccC
Confidence 4788899999988743 3458899999999874211 1111 2233566788888888888766643
Q ss_pred CCCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCCCC---CCCccEEEccCCCCCCCCcccccCCCCCcEEecCC
Q psy12210 81 SGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILL---PEATTELRLEQNDITELPPKAFANYKRLRRIDLSK 157 (405)
Q Consensus 81 ~~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~~~---~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~ 157 (405)
... ++.+++++|.++.+|... .++|+.|+|++|.|+.+++..|.++++|+.|++++
T Consensus 87 l~~---------------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~ 145 (361)
T 2xot_A 87 VPN---------------------LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ 145 (361)
T ss_dssp CTT---------------------CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCC---------------------CCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCC
Confidence 322 399999999999998753 36899999999999999988999999999999999
Q ss_pred Ccceeeccccc---CCCCCCCEEEccCCcCcccChhhhhcccC--CcEEEeecCccccccCchHH-HHHHhhcC----CC
Q psy12210 158 NQISKVAVDAF---QGLKSLTSLTLNNNNLTYLPDGVFAELFR--LRTLRISENSFICDCHLSWL-HRWLKRYP----RL 227 (405)
Q Consensus 158 n~l~~~~~~~~---~~l~~L~~L~l~~n~l~~l~~~~f~~l~~--L~~L~l~~N~l~~~~~l~~~-~~~~~~~~----~~ 227 (405)
|.++.+++..| ..+++|+.|++++|.++.++...|..++. ++.|++.+|++.|+|.+.++ ..|..... ..
T Consensus 146 N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l~~~~~~~~~~~~~~~~~~ 225 (361)
T 2xot_A 146 NQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDF 225 (361)
T ss_dssp SCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHHHHHHHHHHHHTTCHHHHTT
T ss_pred CcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcCcHHHHHHHHHhcCCchhcc
Confidence 99999988777 56999999999999999999988998887 48999999999999999886 45654332 11
Q ss_pred CCccccCCCCCC
Q psy12210 228 GLYTKCFAPSHI 239 (405)
Q Consensus 228 ~~~~~~~~~~~l 239 (405)
.....|..|..+
T Consensus 226 ~~~~~C~~p~~~ 237 (361)
T 2xot_A 226 QEDLYCMHSKKL 237 (361)
T ss_dssp GGGCEEESSSCC
T ss_pred CcCCEeCCChHH
Confidence 233455555443
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.77 E-value=2.6e-18 Score=169.97 Aligned_cols=163 Identities=20% Similarity=0.309 Sum_probs=134.9
Q ss_pred ceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCc
Q psy12210 106 GIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLT 185 (405)
Q Consensus 106 ~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 185 (405)
+.+++++|.++.+| ..+++|+.|++++|.|+.++. +.+ +|+.|++++|.++.+++ .+++|+.|++++|.++
T Consensus 83 ~~L~Ls~N~l~~ip-~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~ 153 (571)
T 3cvr_A 83 TVLEITQNALISLP-ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDVDNNQLTMLPE----LPALLEYINADNNQLT 153 (571)
T ss_dssp SEEECCSSCCSCCC-CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCS
T ss_pred CEEECcCCCCcccc-cccCCCCEEEccCCCCCCcch--hhc--CCCEEECCCCcCCCCCC----cCccccEEeCCCCccC
Confidence 89999999999999 777899999999999999886 555 99999999999999765 6789999999999999
Q ss_pred ccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCccccccccc
Q psy12210 186 YLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKI 265 (405)
Q Consensus 186 ~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~ 265 (405)
.++. .+++|+.|++++|.+. .++. +. .
T Consensus 154 ~lp~----~l~~L~~L~Ls~N~L~------------------------------------~lp~--l~-~---------- 180 (571)
T 3cvr_A 154 MLPE----LPTSLEVLSVRNNQLT------------------------------------FLPE--LP-E---------- 180 (571)
T ss_dssp CCCC----CCTTCCEEECCSSCCS------------------------------------CCCC--CC-T----------
T ss_pred cCCC----cCCCcCEEECCCCCCC------------------------------------Ccch--hh-C----------
Confidence 9886 4789999999999754 2222 21 0
Q ss_pred eecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCCCCCc-------eEEEEE-ecceeee
Q psy12210 266 YREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEAT-------TELTYM-VSIDRVD 337 (405)
Q Consensus 266 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~~~~l-------~~L~l~-n~i~~i~ 337 (405)
+|+.|++++|.|+.+|. ++.++ +.|+++ |.|+.+|
T Consensus 181 ------------------------------------~L~~L~Ls~N~L~~lp~-~~~~L~~~~~~L~~L~Ls~N~l~~lp 223 (571)
T 3cvr_A 181 ------------------------------------SLEALDVSTNLLESLPA-VPVRNHHSEETEIFFRCRENRITHIP 223 (571)
T ss_dssp ------------------------------------TCCEEECCSSCCSSCCC-CC--------CCEEEECCSSCCCCCC
T ss_pred ------------------------------------CCCEEECcCCCCCchhh-HHHhhhcccccceEEecCCCcceecC
Confidence 58999999999999988 66688 999999 9999998
Q ss_pred ccchhccccccccCCcc-ceEEecCCCCcccCcccccCCc
Q psy12210 338 KVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYK 376 (405)
Q Consensus 338 ~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~ 376 (405)
..+..+++ +.|+|++|+|+...+..|..++
T Consensus 224 ---------~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 224 ---------ENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp ---------GGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred ---------HHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 45556899 9999999999987777676543
No 97
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=4.3e-18 Score=149.72 Aligned_cols=163 Identities=21% Similarity=0.365 Sum_probs=136.8
Q ss_pred ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210 2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS 81 (405)
Q Consensus 2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~ 81 (405)
+++.++++++.+|... .++|+.|++++|.|++ +....|...
T Consensus 23 ~v~c~~~~l~~ip~~~---~~~L~~L~Ls~n~i~~------------------------------------~~~~~~~~l 63 (229)
T 3e6j_A 23 TVDCRSKRHASVPAGI---PTNAQILYLHDNQITK------------------------------------LEPGVFDSL 63 (229)
T ss_dssp EEECTTSCCSSCCSCC---CTTCSEEECCSSCCCC------------------------------------CCTTTTTTC
T ss_pred EeEccCCCcCccCCCC---CCCCCEEEcCCCccCc------------------------------------cCHHHhhCc
Confidence 4788999999999853 4889999999999862 111111111
Q ss_pred CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCCCC---CCCccEEEccCCCCCCCCcccccCCCCCcEEecCCC
Q psy12210 82 GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILL---PEATTELRLEQNDITELPPKAFANYKRLRRIDLSKN 158 (405)
Q Consensus 82 ~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~~~---~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n 158 (405)
. .++.+++++|+++.+|... .++|+.|++++|.|+.+++..|..+++|+.|++++|
T Consensus 64 ~---------------------~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N 122 (229)
T 3e6j_A 64 I---------------------NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCN 122 (229)
T ss_dssp T---------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred c---------------------CCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCC
Confidence 0 1278888888888888654 368999999999999999988999999999999999
Q ss_pred cceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccC-chHHHHHHhhcC
Q psy12210 159 QISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCH-LSWLHRWLKRYP 225 (405)
Q Consensus 159 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~-l~~~~~~~~~~~ 225 (405)
.++.++ ..+..+++|+.|++++|+++.+++..|..+++|+.|++.+|++.|+|. +.++..|+....
T Consensus 123 ~l~~lp-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~l~~~~~~~~ 189 (229)
T 3e6j_A 123 KLTELP-RGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDIMYLRNWVADHT 189 (229)
T ss_dssp CCCSCC-TTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGGGHHHHHHHHHCG
T ss_pred cccccC-cccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcchhHHHHHHHHhCc
Confidence 999875 568899999999999999999999899999999999999999999996 899998887654
No 98
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.76 E-value=6.1e-18 Score=155.60 Aligned_cols=179 Identities=18% Similarity=0.304 Sum_probs=153.2
Q ss_pred CCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEe
Q psy12210 124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRI 203 (405)
Q Consensus 124 ~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l 203 (405)
++++.|+++++.++.++ .+..+++|+.|++++|.++.+++ +..+++|++|++++|.++.++ .+..+++|+.|++
T Consensus 41 ~~L~~L~l~~~~i~~l~--~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~l 114 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS--AIAGLQSIKTLDL 114 (308)
T ss_dssp HTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG--GGTTCTTCCEEEC
T ss_pred CCcCEEEeeCCCccCch--hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch--hhcCCCCCCEEEC
Confidence 48999999999999987 48899999999999999999876 899999999999999999986 4888999999999
Q ss_pred ecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCccccccccceecccccCCCCCCCCCCC
Q psy12210 204 SENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVE 283 (405)
Q Consensus 204 ~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 283 (405)
++|.+. .++. +...
T Consensus 115 ~~n~l~------------------------------------~~~~--l~~l---------------------------- 128 (308)
T 1h6u_A 115 TSTQIT------------------------------------DVTP--LAGL---------------------------- 128 (308)
T ss_dssp TTSCCC------------------------------------CCGG--GTTC----------------------------
T ss_pred CCCCCC------------------------------------Cchh--hcCC----------------------------
Confidence 999854 1111 1111
Q ss_pred CCCCCCCCCCCCCCCccccCceeecCCCCCCcCCC-CCCCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEec
Q psy12210 284 KPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPI-LLPEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLE 360 (405)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~-~~~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~ 360 (405)
.+|++|++++|.++.++. ...++|+.|+++ |++++++ + +..+++ +.|+++
T Consensus 129 -----------------~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~--------~--l~~l~~L~~L~l~ 181 (308)
T 1h6u_A 129 -----------------SNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLT--------P--LANLSKLTTLKAD 181 (308)
T ss_dssp -----------------TTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG--------G--GTTCTTCCEEECC
T ss_pred -----------------CCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCCh--------h--hcCCCCCCEEECC
Confidence 159999999999998864 234799999999 9999987 3 889999 999999
Q ss_pred CCCCcccCcccccCCccCceeecccCCCcccChhhcCCCccccCC
Q psy12210 361 QNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405 (405)
Q Consensus 361 ~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L 405 (405)
+|+|+.+++ +..+++|+.|+|++|+++++++ +..+++|++|
T Consensus 182 ~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L 222 (308)
T 1h6u_A 182 DNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIV 222 (308)
T ss_dssp SSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEE
T ss_pred CCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEE
Confidence 999999986 8889999999999999999985 7888888754
No 99
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.76 E-value=9e-18 Score=141.52 Aligned_cols=113 Identities=37% Similarity=0.700 Sum_probs=108.0
Q ss_pred CCCCccccCceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCE
Q psy12210 97 CPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTS 176 (405)
Q Consensus 97 ~p~~~~c~~~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~ 176 (405)
||..|+|..+.++|++++++.+|..++++++.|++++|.++.+++..|.++++|+.|++++|.++.+++..|.++++|+.
T Consensus 1 Cp~~C~C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 80 (177)
T 2o6r_A 1 CPSRCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTI 80 (177)
T ss_dssp CCTTCEEETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CcCCCEeCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCE
Confidence 89999999999999999999999999999999999999999999988999999999999999999999888999999999
Q ss_pred EEccCCcCcccChhhhhcccCCcEEEeecCccc
Q psy12210 177 LTLNNNNLTYLPDGVFAELFRLRTLRISENSFI 209 (405)
Q Consensus 177 L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~ 209 (405)
|++++|.++.+++..|..+++|+.|++++|.+.
T Consensus 81 L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 113 (177)
T 2o6r_A 81 LYLHENKLQSLPNGVFDKLTQLKELALDTNQLK 113 (177)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred EECCCCCccccCHHHhhCCcccCEEECcCCcce
Confidence 999999999999988999999999999999753
No 100
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.76 E-value=4.8e-19 Score=166.90 Aligned_cols=261 Identities=15% Similarity=0.137 Sum_probs=168.9
Q ss_pred CccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCcccc
Q psy12210 1 MPRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKC 80 (405)
Q Consensus 1 ~~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~ 80 (405)
|-+.+++|++++..+..+...++|+.|++++|.+++... ..+...+...+
T Consensus 1 ~~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~l~~~l~~~~----------------------------- 50 (362)
T 3goz_A 1 MNYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSIST-VELIQAFANTP----------------------------- 50 (362)
T ss_dssp CEEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCH-HHHHHHHHTCC-----------------------------
T ss_pred CccccccccchHHHHHHHhCCCCceEEEccCCCCChHHH-HHHHHHHHhCC-----------------------------
Confidence 457899999999888766666779999999999864222 12222221111
Q ss_pred CCCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCC-C-------CCCCccEEEccCCCCCCCCcccc----cCC-
Q psy12210 81 SGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPI-L-------LPEATTELRLEQNDITELPPKAF----ANY- 147 (405)
Q Consensus 81 ~~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~-~-------~~~~L~~L~L~~n~i~~l~~~~~----~~l- 147 (405)
|..+.+++++|.++.... . .++++++|++++|.++...+..+ ..+
T Consensus 51 ----------------------~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~ 108 (362)
T 3goz_A 51 ----------------------ASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIP 108 (362)
T ss_dssp ----------------------TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSC
T ss_pred ----------------------CceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCC
Confidence 012455555555554321 1 12578888888888887776533 333
Q ss_pred CCCcEEecCCCcceeeccccc----CC-CCCCCEEEccCCcCcccChhhh----hccc-CCcEEEeecCccccccCchHH
Q psy12210 148 KRLRRIDLSKNQISKVAVDAF----QG-LKSLTSLTLNNNNLTYLPDGVF----AELF-RLRTLRISENSFICDCHLSWL 217 (405)
Q Consensus 148 ~~L~~L~ls~n~l~~~~~~~~----~~-l~~L~~L~l~~n~l~~l~~~~f----~~l~-~L~~L~l~~N~l~~~~~l~~~ 217 (405)
++|++|++++|.++...+..+ .. .++|++|++++|.++......+ ..++ +|+.|++++|.+..
T Consensus 109 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~------- 181 (362)
T 3goz_A 109 FTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS------- 181 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG-------
T ss_pred CCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch-------
Confidence 788888888888877665433 33 3578888888888875554333 3344 78888888877541
Q ss_pred HHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy12210 218 HRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPH 297 (405)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 297 (405)
.....+... +.
T Consensus 182 -----------------------------~~~~~l~~~----------l~------------------------------ 192 (362)
T 3goz_A 182 -----------------------------KNCAELAKF----------LA------------------------------ 192 (362)
T ss_dssp -----------------------------SCHHHHHHH----------HH------------------------------
T ss_pred -----------------------------hhHHHHHHH----------HH------------------------------
Confidence 111111000 00
Q ss_pred CccccCceeecCCCCCCc-----CCCCC---CCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCccc
Q psy12210 298 PCRCADGIVDCREKGLNK-----VPILL---PEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITEL 367 (405)
Q Consensus 298 ~~~~~l~~l~l~~n~l~~-----~p~~~---~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i 367 (405)
.+.++|++|++++|.++. ++..+ ++.+++|+++ |.+...+...+ ...++.+++ +.|+|++|++..+
T Consensus 193 ~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l----~~~~~~l~~L~~L~L~~n~l~~i 268 (362)
T 3goz_A 193 SIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENL----KLLKDSLKHLQTVYLDYDIVKNM 268 (362)
T ss_dssp TSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHH----HHTTTTTTTCSEEEEEHHHHTTC
T ss_pred hCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHH----HHHHhcCCCccEEEeccCCcccc
Confidence 000159999999999987 33322 4689999999 99988762211 134677888 9999999996665
Q ss_pred Ccc-------cccCCccCceeecccCCCcccCh
Q psy12210 368 PPK-------AFANYKRLRRIRLEQNDITELPP 393 (405)
Q Consensus 368 ~~~-------~~~~l~~L~~L~L~~N~l~~i~~ 393 (405)
.+. .+..+++|+.||+++|++....+
T Consensus 269 ~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 269 SKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp CHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred CHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 543 46778999999999999887643
No 101
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.75 E-value=3.3e-17 Score=141.78 Aligned_cols=164 Identities=24% Similarity=0.432 Sum_probs=135.6
Q ss_pred ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210 2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS 81 (405)
Q Consensus 2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~ 81 (405)
.++.++++++.++... .++|+.|++++|.+++ ++...|...
T Consensus 11 ~v~c~~~~l~~~p~~~---~~~l~~L~l~~n~l~~------------------------------------~~~~~~~~l 51 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI---PAQTTYLDLETNSLKS------------------------------------LPNGVFDEL 51 (208)
T ss_dssp EEECCSSCCSSCCSCC---CTTCSEEECCSSCCCC------------------------------------CCTTTTTTC
T ss_pred EEEecCCCccCCCCCC---CCCCcEEEcCCCccCc------------------------------------CChhhhccc
Confidence 4678899999998743 5689999999998862 222222111
Q ss_pred CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCCCC---CCCccEEEccCCCCCCCCcccccCCCCCcEEecCCC
Q psy12210 82 GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILL---PEATTELRLEQNDITELPPKAFANYKRLRRIDLSKN 158 (405)
Q Consensus 82 ~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~~~---~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n 158 (405)
. .++.+++++|+++.+|... .++|++|++++|.++.+++..|.++++|+.|++++|
T Consensus 52 ~---------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N 110 (208)
T 2o6s_A 52 T---------------------SLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTN 110 (208)
T ss_dssp T---------------------TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred c---------------------cCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCC
Confidence 0 1278888888888888653 368999999999999999888999999999999999
Q ss_pred cceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccC-chHHHHHHhhcC
Q psy12210 159 QISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCH-LSWLHRWLKRYP 225 (405)
Q Consensus 159 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~-l~~~~~~~~~~~ 225 (405)
.++.+++..|..+++|+.|++++|.++.+++..|..+++|+.|++++|++.|+|. ++++..+.....
T Consensus 111 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 111 QLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHS 178 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTTTTHHHHHHHHHCT
T ss_pred cCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCCCHHHHHHHHHhCC
Confidence 9999998889999999999999999999999889999999999999999999986 788776655444
No 102
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.75 E-value=1.1e-18 Score=160.93 Aligned_cols=204 Identities=14% Similarity=0.072 Sum_probs=144.3
Q ss_pred CCccEEEccCCCCCCCCcccc--cCCCCCcEEecCCCcceeecc----cccCCCCCCCEEEccCCcCcccChhhhhcccC
Q psy12210 124 EATTELRLEQNDITELPPKAF--ANYKRLRRIDLSKNQISKVAV----DAFQGLKSLTSLTLNNNNLTYLPDGVFAELFR 197 (405)
Q Consensus 124 ~~L~~L~L~~n~i~~l~~~~~--~~l~~L~~L~ls~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~ 197 (405)
++++.|++++|.+++..+..+ ..+++|++|++++|.++...+ ..+..+++|++|++++|.+..+++..|+.+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 469999999999998777767 889999999999999886432 34557889999999999999999888999999
Q ss_pred CcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCccccccccceecccccCCCCC
Q psy12210 198 LRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPY 277 (405)
Q Consensus 198 L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (405)
|+.|++++|.+... .. ............+..+.+.++.+..++.....-
T Consensus 171 L~~L~Ls~N~l~~~------~~--~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l----------------------- 219 (310)
T 4glp_A 171 LTSLDLSDNPGLGE------RG--LMAALCPHKFPAIQNLALRNTGMETPTGVCAAL----------------------- 219 (310)
T ss_dssp CCEEECCSCTTCHH------HH--HHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHH-----------------------
T ss_pred CCEEECCCCCCccc------hh--hhHHHhhhcCCCCCEEECCCCCCCchHHHHHHH-----------------------
Confidence 99999999985410 00 000111112223444445444443322210000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcC-CCCC-----CCCceEEEEE-ecceeeeccchhcccccccc
Q psy12210 278 NSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKV-PILL-----PEATTELTYM-VSIDRVDKVLLYSYISNNFK 350 (405)
Q Consensus 278 ~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~-p~~~-----~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~ 350 (405)
+. ...+|++|++++|.++.+ |..+ ++.|++|+++ |+++.++ . .+.
T Consensus 220 ------------~~-------~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp--------~-~~~ 271 (310)
T 4glp_A 220 ------------AA-------AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVP--------K-GLP 271 (310)
T ss_dssp ------------HH-------HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCC--------S-CCC
T ss_pred ------------Hh-------cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchh--------h-hhc
Confidence 00 001588999999999887 5433 2589999999 9999887 3 232
Q ss_pred CCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcc
Q psy12210 351 RWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITE 390 (405)
Q Consensus 351 ~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~ 390 (405)
++ +.|+|++|+|+.++. +..+++|+.|+|++|+++.
T Consensus 272 --~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 272 --AKLRVLDLSSNRLNRAPQ--PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp --SCCSCEECCSCCCCSCCC--TTSCCCCSCEECSSTTTSC
T ss_pred --CCCCEEECCCCcCCCCch--hhhCCCccEEECcCCCCCC
Confidence 57 999999999998854 6788999999999998875
No 103
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.75 E-value=1.1e-17 Score=156.65 Aligned_cols=142 Identities=28% Similarity=0.478 Sum_probs=126.4
Q ss_pred CCCCc-cccCceEEcCCC-CccccCCCCC--CCccEEEccC-CCCCCCCcccccCCCCCcEEecCCCcceeecccccCCC
Q psy12210 97 CPHPC-RCADGIVDCREK-GLNKVPILLP--EATTELRLEQ-NDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGL 171 (405)
Q Consensus 97 ~p~~~-~c~~~~l~~~~n-~l~~lp~~~~--~~L~~L~L~~-n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l 171 (405)
||..| .|....++|+++ +++++|. ++ ++|+.|+|++ |.|+.+++..|.++++|+.|+|++|.++++++..|.++
T Consensus 1 cp~~c~~C~~~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l 79 (347)
T 2ifg_A 1 CPDACCPHGSSGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFT 79 (347)
T ss_dssp CCSSSCCSSSSCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSC
T ss_pred CCCcCccccCCEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCC
Confidence 89999 999999999998 9999999 76 4699999996 99999999999999999999999999999999999999
Q ss_pred CCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCC--CCccccCCCCCCC
Q psy12210 172 KSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRL--GLYTKCFAPSHIK 240 (405)
Q Consensus 172 ~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~l~ 240 (405)
++|++|++++|+|+.++++.|..++ |+.|++.+|++.|+|.+.|+..|....... .....|..+..+.
T Consensus 80 ~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~~~l~ 149 (347)
T 2ifg_A 80 PRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLA 149 (347)
T ss_dssp SCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSSCSS
T ss_pred cCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccCCCccHHHHHHHHhCcccccccCCCCCCChHHh
Confidence 9999999999999999999888776 999999999999999999999998765443 2345565555433
No 104
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.73 E-value=6.9e-18 Score=156.80 Aligned_cols=256 Identities=13% Similarity=0.105 Sum_probs=164.6
Q ss_pred ceEEcCCCCcc--ccCCCCCCCccEEEccCCCCCCCCcccccC--------CCCCcEEecCCCcceeecccccCCCCCCC
Q psy12210 106 GIVDCREKGLN--KVPILLPEATTELRLEQNDITELPPKAFAN--------YKRLRRIDLSKNQISKVAVDAFQGLKSLT 175 (405)
Q Consensus 106 ~~l~~~~n~l~--~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~--------l~~L~~L~ls~n~l~~~~~~~~~~l~~L~ 175 (405)
+.+++++|.+. ..+....+.+..+.+..+ .++..+|.+ +.+|+.+++++ .++.+...+|.++++|+
T Consensus 52 ~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~ 127 (329)
T 3sb4_A 52 KVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLK 127 (329)
T ss_dssp CEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCC
T ss_pred eEEecCcceeEEecCcccccccccccccccc---ccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccc
Confidence 77777777777 444333222334444444 677788888 99999999999 99999999999999999
Q ss_pred EEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCC-ccccCCCC-CCCCCcccccCCCccc
Q psy12210 176 SLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGL-YTKCFAPS-HIKGQNILDIPEHEFK 253 (405)
Q Consensus 176 ~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~-~l~~~~l~~l~~~~~~ 253 (405)
.++++.|.+..+++.+|..+.++..+....+... ......... -..|.... .+.-.....++...+.
T Consensus 128 ~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~-----------~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~ 196 (329)
T 3sb4_A 128 ICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAY-----------RFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMK 196 (329)
T ss_dssp EEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHH-----------HTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHH
T ss_pred eEEcCCCCccccchhhhcCCCceEEecCcchhhh-----------hccccccccccccccccceeEEecCCCcHHHHHhh
Confidence 9999999999999999998777776665543210 000000000 00000000 0000000000000000
Q ss_pred c-cCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCCC---CCceEEEE
Q psy12210 254 C-SGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLP---EATTELTY 329 (405)
Q Consensus 254 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~~---~~l~~L~l 329 (405)
. .... .. .+ ..+. .. +.......+. ..| .+|+.+++++|+++.+|...| ++|+.+++
T Consensus 197 ~~~~~~--~~--~~-----l~~~---~~-l~~~~~~~l~-~~~-----~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l 257 (329)
T 3sb4_A 197 AGLQPR--DI--NF-----LTIE---GK-LDNADFKLIR-DYM-----PNLVSLDISKTNATTIPDFTFAQKKYLLKIKL 257 (329)
T ss_dssp TTCCGG--GC--SE-----EEEE---EC-CCHHHHHHHH-HHC-----TTCCEEECTTBCCCEECTTTTTTCTTCCEEEC
T ss_pred cccCcc--cc--ce-----EEEe---ee-ecHHHHHHHH-Hhc-----CCCeEEECCCCCcceecHhhhhCCCCCCEEEC
Confidence 0 0000 00 00 0000 00 0000000000 001 169999999999999998887 47899999
Q ss_pred E-ecceeeeccchhccccccccCCcc-c-eEEecCCCCcccCcccccCCccCceeecccCCCcccChhhcCCCccccCC
Q psy12210 330 M-VSIDRVDKVLLYSYISNNFKRWTN-R-SRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405 (405)
Q Consensus 330 ~-n~i~~i~~~~~~~~~~~~~~~l~~-~-~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L 405 (405)
. | +..|+ ...|.++.+ + .+++++ .++.|++.+|.+|++|+.+++++|.++.|+..+|.++++|+.+
T Consensus 258 ~~n-i~~I~--------~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 258 PHN-LKTIG--------QRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp CTT-CCEEC--------TTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEE
T ss_pred Ccc-cceeh--------HHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhh
Confidence 9 6 99999 899999999 9 999998 8999999999999999999999999999999999999999864
No 105
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.73 E-value=7.3e-19 Score=170.98 Aligned_cols=87 Identities=13% Similarity=0.087 Sum_probs=58.1
Q ss_pred cCceeecCCCCCCcCC-----CCC--CCCceEEEEE-ecceeeeccchhccccccccC-Ccc-ceEEecCCCCcc----c
Q psy12210 302 ADGIVDCREKGLNKVP-----ILL--PEATTELTYM-VSIDRVDKVLLYSYISNNFKR-WTN-RSRRLEQNDITE----L 367 (405)
Q Consensus 302 ~l~~l~l~~n~l~~~p-----~~~--~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~-l~~-~~L~L~~N~i~~----i 367 (405)
+++.|++++|.++... ..+ .+.+++|+++ |.+.......+ ...+.. .++ +.|+|++|+|+. .
T Consensus 314 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l----~~~l~~~~~~L~~L~L~~n~i~~~~~~~ 389 (461)
T 1z7x_W 314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL----CQGLGQPGSVLRVLWLADCDVSDSSCSS 389 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHH----HHHHTSTTCCCCEEECTTSCCCHHHHHH
T ss_pred cceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHH----HHHHcCCCCceEEEECCCCCCChhhHHH
Confidence 5888888888887542 111 2688889998 88776541110 111222 557 889999998884 2
Q ss_pred CcccccCCccCceeecccCCCcccC
Q psy12210 368 PPKAFANYKRLRRIRLEQNDITELP 392 (405)
Q Consensus 368 ~~~~~~~l~~L~~L~L~~N~l~~i~ 392 (405)
.+..+..+++|+.|+|++|+++...
T Consensus 390 l~~~l~~~~~L~~L~l~~N~i~~~~ 414 (461)
T 1z7x_W 390 LAATLLANHSLRELDLSNNCLGDAG 414 (461)
T ss_dssp HHHHHHHCCCCCEEECCSSSCCHHH
T ss_pred HHHHHHhCCCccEEECCCCCCCHHH
Confidence 2344677889999999999887653
No 106
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.72 E-value=1.2e-19 Score=176.63 Aligned_cols=320 Identities=13% Similarity=0.127 Sum_probs=169.0
Q ss_pred ccccCCCcCccCCchh-hccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCcccc
Q psy12210 2 PRTLNNNNLTYLPDGV-FAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKC 80 (405)
Q Consensus 2 ~L~l~~n~i~~l~~~~-f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~ 80 (405)
.|+|++|+++...... |..+++|+.|++++|.++.. +...+...+...+. .+.++++++.+.+.....+..
T Consensus 7 ~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~-~~~~l~~~l~~~~~-------L~~L~Ls~n~l~~~~~~~l~~ 78 (461)
T 1z7x_W 7 SLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEA-RCKDISSALRVNPA-------LAELNLRSNELGDVGVHCVLQ 78 (461)
T ss_dssp EEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHH-HHHHHHHHHHTCTT-------CCEEECTTCCCHHHHHHHHHH
T ss_pred ehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHH-HHHHHHHHHHhCCC-------cCEEeCCCCcCChHHHHHHHH
Confidence 5899999998776544 88999999999999998631 22233333333222 234556666555432211110
Q ss_pred CCCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccc-----cCCCC--CCCccEEEccCCCCCCCCcccc-----cCCC
Q psy12210 81 SGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNK-----VPILL--PEATTELRLEQNDITELPPKAF-----ANYK 148 (405)
Q Consensus 81 ~~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~-----lp~~~--~~~L~~L~L~~n~i~~l~~~~~-----~~l~ 148 (405)
. . ..+.|..+.+++++|.++. +|..+ .++++.|++++|.++......+ ...+
T Consensus 79 ~-l---------------~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~ 142 (461)
T 1z7x_W 79 G-L---------------QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQC 142 (461)
T ss_dssp T-T---------------CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTC
T ss_pred H-H---------------hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCC
Confidence 0 0 0011223666666666652 23222 2456666666666654332222 1234
Q ss_pred CCcEEecCCCcceeec----ccccCCCCCCCEEEccCCcCcccChhhhhc-----ccCCcEEEeecCccccccCchHHHH
Q psy12210 149 RLRRIDLSKNQISKVA----VDAFQGLKSLTSLTLNNNNLTYLPDGVFAE-----LFRLRTLRISENSFICDCHLSWLHR 219 (405)
Q Consensus 149 ~L~~L~ls~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~-----l~~L~~L~l~~N~l~~~~~l~~~~~ 219 (405)
+|++|++++|.++... +..+..+++|++|++++|.++......+.. .++|+.|++++|.+... ....+..
T Consensus 143 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~-~~~~l~~ 221 (461)
T 1z7x_W 143 RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSD-NCRDLCG 221 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTT-HHHHHHH
T ss_pred cceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHH-HHHHHHH
Confidence 5666666666665432 233444566666666666655443333321 34666666666654411 0111222
Q ss_pred HHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q psy12210 220 WLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPC 299 (405)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 299 (405)
.+...+ .+....+.++.+.......+.. ..+ ..
T Consensus 222 ~l~~~~-------~L~~L~Ls~n~l~~~~~~~l~~---------------------------------~~~-------~~ 254 (461)
T 1z7x_W 222 IVASKA-------SLRELALGSNKLGDVGMAELCP---------------------------------GLL-------HP 254 (461)
T ss_dssp HHHHCT-------TCCEEECCSSBCHHHHHHHHHH---------------------------------HHT-------ST
T ss_pred HHHhCC-------CccEEeccCCcCChHHHHHHHH---------------------------------HHh-------cC
Confidence 211111 1111222222221111000000 000 01
Q ss_pred cccCceeecCCCCCCc-----CCCCC--CCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccC--
Q psy12210 300 RCADGIVDCREKGLNK-----VPILL--PEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELP-- 368 (405)
Q Consensus 300 ~~~l~~l~l~~n~l~~-----~p~~~--~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~-- 368 (405)
..++++|++++|.++. ++..+ .+.+++|+++ |.+.......+. .......++ +.|++++|.++...
T Consensus 255 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~---~~l~~~~~~L~~L~L~~n~l~~~~~~ 331 (461)
T 1z7x_W 255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLC---ETLLEPGCQLESLWVKSCSFTAACCS 331 (461)
T ss_dssp TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHH---HHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred CCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHH---HHhccCCccceeeEcCCCCCchHHHH
Confidence 1269999999999987 33322 4689999999 988755411110 111122357 99999999998764
Q ss_pred --cccccCCccCceeecccCCCcccChhhc
Q psy12210 369 --PKAFANYKRLRRIRLEQNDITELPPKAF 396 (405)
Q Consensus 369 --~~~~~~l~~L~~L~L~~N~l~~i~~~~f 396 (405)
+..+..+++|+.|+|++|.+++.....+
T Consensus 332 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 361 (461)
T 1z7x_W 332 HFSSVLAQNRFLLELQISNNRLEDAGVREL 361 (461)
T ss_dssp HHHHHHHHCSSCCEEECCSSBCHHHHHHHH
T ss_pred HHHHHHhhCCCccEEEccCCccccccHHHH
Confidence 3345667999999999999988765433
No 107
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.72 E-value=2.4e-18 Score=162.11 Aligned_cols=240 Identities=16% Similarity=0.101 Sum_probs=168.7
Q ss_pred ccccCCCcCccCCc----hhhcccc-ccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCC
Q psy12210 2 PRTLNNNNLTYLPD----GVFAELF-RLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEH 76 (405)
Q Consensus 2 ~L~l~~n~i~~l~~----~~f~~l~-~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~ 76 (405)
.|+|++|+|+.+++ .+|.+++ +|+.|++++|.+++... ..+...+...
T Consensus 26 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~-~~l~~~l~~~-------------------------- 78 (362)
T 3goz_A 26 SLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNS-DELVQILAAI-------------------------- 78 (362)
T ss_dssp EEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCH-HHHHHHHHTS--------------------------
T ss_pred EEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHH-HHHHHHHhcc--------------------------
Confidence 68999999999998 7888999 99999999999974322 1221111110
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCCC--------CCCCccEEEccCCCCCCCCccccc---
Q psy12210 77 EFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPIL--------LPEATTELRLEQNDITELPPKAFA--- 145 (405)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~~--------~~~~L~~L~L~~n~i~~l~~~~~~--- 145 (405)
+ ..++.+++++|.++..+.. .+++++.|++++|.++..+...+.
T Consensus 79 -~------------------------~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 133 (362)
T 3goz_A 79 -P------------------------ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAF 133 (362)
T ss_dssp -C------------------------TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHH
T ss_pred -C------------------------CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHH
Confidence 0 0126677777776654422 126899999999999998876543
Q ss_pred -C-CCCCcEEecCCCcceeecc----cccCCCC-CCCEEEccCCcCcccChhhhhcc-----cCCcEEEeecCccccccC
Q psy12210 146 -N-YKRLRRIDLSKNQISKVAV----DAFQGLK-SLTSLTLNNNNLTYLPDGVFAEL-----FRLRTLRISENSFICDCH 213 (405)
Q Consensus 146 -~-l~~L~~L~ls~n~l~~~~~----~~~~~l~-~L~~L~l~~n~l~~l~~~~f~~l-----~~L~~L~l~~N~l~~~~~ 213 (405)
. .++|++|++++|.++.... ..+...+ +|++|++++|.++......+... ++|+.|++++|.+...
T Consensus 134 ~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~-- 211 (362)
T 3goz_A 134 SNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLK-- 211 (362)
T ss_dssp TTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS--
T ss_pred HhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChh--
Confidence 3 3699999999999985443 3344554 99999999999998887555544 6999999999986510
Q ss_pred chHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCC
Q psy12210 214 LSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEP 293 (405)
Q Consensus 214 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 293 (405)
....+... +...
T Consensus 212 -----------------------------~~~~l~~~-l~~~-------------------------------------- 223 (362)
T 3goz_A 212 -----------------------------SYAELAYI-FSSI-------------------------------------- 223 (362)
T ss_dssp -----------------------------CHHHHHHH-HHHS--------------------------------------
T ss_pred -----------------------------HHHHHHHH-HhcC--------------------------------------
Confidence 01111111 1000
Q ss_pred CCCCCccccCceeecCCCCCCcCCC-------CCCCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCC
Q psy12210 294 SCPHPCRCADGIVDCREKGLNKVPI-------LLPEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDI 364 (405)
Q Consensus 294 ~~~~~~~~~l~~l~l~~n~l~~~p~-------~~~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i 364 (405)
..+|++|++++|.++..+. ...+.++.|+++ |.+..+....+..+ ...+..+++ +.||+++|+|
T Consensus 224 ------~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l-~~~~~~l~~L~~LdL~~N~l 296 (362)
T 3goz_A 224 ------PNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKAL-GAAFPNIQKIILVDKNGKEI 296 (362)
T ss_dssp ------CTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHH-HTTSTTCCEEEEECTTSCBC
T ss_pred ------CCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHH-HHHhccCCceEEEecCCCcC
Confidence 0159999999999998654 234789999999 99777764433333 457888999 9999999999
Q ss_pred cccCcc
Q psy12210 365 TELPPK 370 (405)
Q Consensus 365 ~~i~~~ 370 (405)
....+.
T Consensus 297 ~~~~~~ 302 (362)
T 3goz_A 297 HPSHSI 302 (362)
T ss_dssp CGGGCH
T ss_pred CCcchH
Confidence 877543
No 108
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.70 E-value=5.6e-17 Score=147.92 Aligned_cols=171 Identities=17% Similarity=0.245 Sum_probs=110.4
Q ss_pred CCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEe
Q psy12210 124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRI 203 (405)
Q Consensus 124 ~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l 203 (405)
++++.|++++|.++.++. +..+++|+.|++++|.++.+++ +..+++|++|++++|.++.++. +..+++|+.|++
T Consensus 46 ~~L~~L~l~~~~i~~~~~--~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L 119 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSL 119 (291)
T ss_dssp HTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEEEC
T ss_pred CcccEEEccCCCcccChh--HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCChh--hccCCCCCEEEC
Confidence 356777777777776643 5666777777777777776654 6667777777777777776653 566777777777
Q ss_pred ecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCccccccccceecccccCCCCCCCCCCC
Q psy12210 204 SENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVE 283 (405)
Q Consensus 204 ~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 283 (405)
++|.+. .++ .+...
T Consensus 120 ~~n~i~------------------------------------~~~--~l~~l---------------------------- 133 (291)
T 1h6t_A 120 EHNGIS------------------------------------DIN--GLVHL---------------------------- 133 (291)
T ss_dssp TTSCCC------------------------------------CCG--GGGGC----------------------------
T ss_pred CCCcCC------------------------------------CCh--hhcCC----------------------------
Confidence 776643 110 01000
Q ss_pred CCCCCCCCCCCCCCCccccCceeecCCCCCCcCCC-CCCCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEec
Q psy12210 284 KPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPI-LLPEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLE 360 (405)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~-~~~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~ 360 (405)
.+|+.|++++|.++.++. ...++|+.|+++ |++.+++ + +..+++ +.|+++
T Consensus 134 -----------------~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~--------~--l~~l~~L~~L~L~ 186 (291)
T 1h6t_A 134 -----------------PQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV--------P--LAGLTKLQNLYLS 186 (291)
T ss_dssp -----------------TTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCG--------G--GTTCTTCCEEECC
T ss_pred -----------------CCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccch--------h--hcCCCccCEEECC
Confidence 046667777777666531 123577777777 7777766 3 667777 777777
Q ss_pred CCCCcccCcccccCCccCceeecccCCCcccChhh
Q psy12210 361 QNDITELPPKAFANYKRLRRIRLEQNDITELPPKA 395 (405)
Q Consensus 361 ~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~ 395 (405)
+|+|+.++. +..+++|+.|++++|+++..+...
T Consensus 187 ~N~i~~l~~--l~~l~~L~~L~l~~n~i~~~~~~~ 219 (291)
T 1h6t_A 187 KNHISDLRA--LAGLKNLDVLELFSQECLNKPINH 219 (291)
T ss_dssp SSCCCBCGG--GTTCTTCSEEEEEEEEEECCCEEC
T ss_pred CCcCCCChh--hccCCCCCEEECcCCcccCCcccc
Confidence 777777753 677777777777777777665543
No 109
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.68 E-value=3.5e-16 Score=131.73 Aligned_cols=102 Identities=31% Similarity=0.638 Sum_probs=95.2
Q ss_pred CCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEe
Q psy12210 124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRI 203 (405)
Q Consensus 124 ~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l 203 (405)
++|++|++++|.++.+++..|..+++|+.|++++|.++.+++..|..+++|+.|++++|.++.+++..|..+++|+.|++
T Consensus 52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 131 (177)
T 2o6r_A 52 TQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWL 131 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred ccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEe
Confidence 58999999999999999988899999999999999999999888999999999999999999999988999999999999
Q ss_pred ecCccccccC-chHHHHHHhhcC
Q psy12210 204 SENSFICDCH-LSWLHRWLKRYP 225 (405)
Q Consensus 204 ~~N~l~~~~~-l~~~~~~~~~~~ 225 (405)
++|++.|+|. +.++..|+....
T Consensus 132 ~~N~~~~~~~~l~~l~~~~~~~~ 154 (177)
T 2o6r_A 132 HTNPWDCSCPRIDYLSRWLNKNS 154 (177)
T ss_dssp CSSCBCCCHHHHHHHHHHHHHTG
T ss_pred cCCCeeccCccHHHHHHHHhhCc
Confidence 9999999997 888888877654
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.68 E-value=1.9e-16 Score=158.17 Aligned_cols=80 Identities=29% Similarity=0.485 Sum_probs=62.9
Q ss_pred CCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEe
Q psy12210 124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRI 203 (405)
Q Consensus 124 ~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l 203 (405)
++|+.|+|++|.++.+++ +..+++|+.|+|++|.+..++ .+..+++|+.|++++|.++.++. +..+++|+.|++
T Consensus 65 ~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~L 138 (605)
T 1m9s_A 65 PNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS--SLKDLKKLKSLSLEHNGISDING--LVHLPQLESLYL 138 (605)
T ss_dssp TTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT--TSTTCTTCCEEECTTSCCCCCGG--GGGCTTCSEEEC
T ss_pred CCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh--hhccCCCCCEEEecCCCCCCCcc--ccCCCccCEEEC
Confidence 478888888888888776 778888888888888887764 47788888888888888887743 677888888888
Q ss_pred ecCccc
Q psy12210 204 SENSFI 209 (405)
Q Consensus 204 ~~N~l~ 209 (405)
++|.+.
T Consensus 139 s~N~l~ 144 (605)
T 1m9s_A 139 GNNKIT 144 (605)
T ss_dssp CSSCCC
T ss_pred CCCccC
Confidence 887644
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.67 E-value=1.7e-17 Score=149.10 Aligned_cols=168 Identities=16% Similarity=0.209 Sum_probs=115.1
Q ss_pred CccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEee
Q psy12210 125 ATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRIS 204 (405)
Q Consensus 125 ~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~ 204 (405)
.+..++++++.++.++ .+..+++|+.|++++|.++.++ .+..+++|+.|++++|.++.+++ +..+++|+.|+++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 4566677777777666 3666777777777777777664 46677777777777777777765 6777777777777
Q ss_pred cCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCccccccccceecccccCCCCCCCCCCCC
Q psy12210 205 ENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEK 284 (405)
Q Consensus 205 ~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 284 (405)
+|.+. .++....
T Consensus 94 ~N~l~------------------------------------~l~~~~~-------------------------------- 105 (263)
T 1xeu_A 94 RNRLK------------------------------------NLNGIPS-------------------------------- 105 (263)
T ss_dssp SSCCS------------------------------------CCTTCCC--------------------------------
T ss_pred CCccC------------------------------------CcCcccc--------------------------------
Confidence 77643 1111000
Q ss_pred CCCCCCCCCCCCCCccccCceeecCCCCCCcCCCC-CCCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecC
Q psy12210 285 PTGECAAEPSCPHPCRCADGIVDCREKGLNKVPIL-LPEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQ 361 (405)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~-~~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~ 361 (405)
.+|+.|++++|+++.++.. ..++|+.|+++ |++++++ .++.+++ +.|+|++
T Consensus 106 ----------------~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~----------~l~~l~~L~~L~L~~ 159 (263)
T 1xeu_A 106 ----------------ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIV----------MLGFLSKLEVLDLHG 159 (263)
T ss_dssp ----------------SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG----------GGGGCTTCCEEECTT
T ss_pred ----------------CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCCh----------HHccCCCCCEEECCC
Confidence 0477777777777776531 23677778887 7777765 4667777 8888888
Q ss_pred CCCcccCcccccCCccCceeecccCCCcccChh
Q psy12210 362 NDITELPPKAFANYKRLRRIRLEQNDITELPPK 394 (405)
Q Consensus 362 N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~ 394 (405)
|+|+.+ ..+..+++|+.|++++|.++..+..
T Consensus 160 N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~~~ 190 (263)
T 1xeu_A 160 NEITNT--GGLTRLKKVNWIDLTGQKCVNEPVK 190 (263)
T ss_dssp SCCCBC--TTSTTCCCCCEEEEEEEEEECCCEE
T ss_pred CcCcch--HHhccCCCCCEEeCCCCcccCCccc
Confidence 888877 4477788888888888887776644
No 112
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.67 E-value=2.6e-15 Score=142.66 Aligned_cols=97 Identities=21% Similarity=0.325 Sum_probs=43.7
Q ss_pred ceEEcCCCCccccCCCCC--CCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCc
Q psy12210 106 GIVDCREKGLNKVPILLP--EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNN 183 (405)
Q Consensus 106 ~~l~~~~n~l~~lp~~~~--~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~ 183 (405)
+.+++++|+++.+|...+ .+++.+.+. +.++.|+..+|.++.+|+.++++.+ ++.+...+|.+ .+|+.+.+ .+.
T Consensus 183 ~~l~l~~n~l~~I~~~aF~~~~L~~l~lp-~~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~ 258 (401)
T 4fdw_A 183 KKADLSKTKITKLPASTFVYAGIEEVLLP-VTLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNG 258 (401)
T ss_dssp CEEECTTSCCSEECTTTTTTCCCSEEECC-TTCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETT
T ss_pred CeeecCCCcceEechhhEeecccCEEEeC-CchheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCC
Confidence 444444444444443322 344444444 2244444444444444444444432 34444444444 34444444 233
Q ss_pred CcccChhhhhcccCCcEEEeecC
Q psy12210 184 LTYLPDGVFAELFRLRTLRISEN 206 (405)
Q Consensus 184 l~~l~~~~f~~l~~L~~L~l~~N 206 (405)
++.++..+|..+++|+.+.+.+|
T Consensus 259 i~~I~~~aF~~c~~L~~l~l~~~ 281 (401)
T 4fdw_A 259 VTNIASRAFYYCPELAEVTTYGS 281 (401)
T ss_dssp CCEECTTTTTTCTTCCEEEEESS
T ss_pred ccEEChhHhhCCCCCCEEEeCCc
Confidence 44444444444444444444443
No 113
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.66 E-value=5.3e-18 Score=161.13 Aligned_cols=190 Identities=17% Similarity=0.159 Sum_probs=128.4
Q ss_pred CCccEEEccCCCCCCC----CcccccCCCCCcEEecCCCcceeecccccCC----C---------CCCCEEEccCCcCcc
Q psy12210 124 EATTELRLEQNDITEL----PPKAFANYKRLRRIDLSKNQISKVAVDAFQG----L---------KSLTSLTLNNNNLTY 186 (405)
Q Consensus 124 ~~L~~L~L~~n~i~~l----~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~----l---------~~L~~L~l~~n~l~~ 186 (405)
++|++|++++|.++.. .+..+.++++|+.|++++|.++...+..+.. + ++|++|++++|.++.
T Consensus 94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~ 173 (386)
T 2ca6_A 94 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN 173 (386)
T ss_dssp TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred CcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc
Confidence 5788888888888873 2235677888888888888887544333332 3 788888888888863
Q ss_pred --cCh--hhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCcccccc
Q psy12210 187 --LPD--GVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETR 262 (405)
Q Consensus 187 --l~~--~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~ 262 (405)
++. ..+..+++|+.|++++|.+... . +..+....+...
T Consensus 174 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~----g---------------------------~~~l~~~~l~~~------- 215 (386)
T 2ca6_A 174 GSMKEWAKTFQSHRLLHTVKMVQNGIRPE----G---------------------------IEHLLLEGLAYC------- 215 (386)
T ss_dssp GGHHHHHHHHHHCTTCCEEECCSSCCCHH----H---------------------------HHHHHHTTGGGC-------
T ss_pred HHHHHHHHHHHhCCCcCEEECcCCCCCHh----H---------------------------HHHHHHHHhhcC-------
Confidence 221 3466778888888888875410 0 000000011000
Q ss_pred ccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCC-----cCCCCC--CCCceEEEEE-ecce
Q psy12210 263 SKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLN-----KVPILL--PEATTELTYM-VSID 334 (405)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~-----~~p~~~--~~~l~~L~l~-n~i~ 334 (405)
.+|++|++++|.++ .+|..+ .++|++|+++ |.+.
T Consensus 216 --------------------------------------~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~ 257 (386)
T 2ca6_A 216 --------------------------------------QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS 257 (386)
T ss_dssp --------------------------------------TTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred --------------------------------------CCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCc
Confidence 15889999999984 444333 4689999999 9988
Q ss_pred eeeccchhccccccc--cCCcc-ceEEecCCCCcc-----cCcccccCCccCceeecccCCCcccCh
Q psy12210 335 RVDKVLLYSYISNNF--KRWTN-RSRRLEQNDITE-----LPPKAFANYKRLRRIRLEQNDITELPP 393 (405)
Q Consensus 335 ~i~~~~~~~~~~~~~--~~l~~-~~L~L~~N~i~~-----i~~~~~~~l~~L~~L~L~~N~l~~i~~ 393 (405)
......+ +..+ ..+++ +.|+|++|+|+. ++...+.++++|+.|+|++|+++...+
T Consensus 258 ~~~~~~l----~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 258 ARGAAAV----VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHH----HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred hhhHHHH----HHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 7531100 2344 33888 999999999998 665544778999999999999998773
No 114
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.66 E-value=1.6e-16 Score=132.93 Aligned_cols=105 Identities=31% Similarity=0.613 Sum_probs=98.4
Q ss_pred CCCCCCccccCceeecCCCCCCcCCCCCCCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcc
Q psy12210 293 PSCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPK 370 (405)
Q Consensus 293 ~~~~~~~~~~l~~l~l~~n~l~~~p~~~~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~ 370 (405)
+.||..|.|..+.+++++|.++++|..+++.+++|+++ |+|++++ +..|.++++ +.|+|++|+|+.+++.
T Consensus 1 ~~CP~~C~C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~--------~~~~~~l~~L~~L~Ls~N~l~~l~~~ 72 (170)
T 3g39_A 1 MACPSQCSCSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLE--------PGVFDRLTQLTRLDLDNNQLTVLPAG 72 (170)
T ss_dssp -CCC-CCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCC--------TTTTTTCTTCSEEECCSSCCCCCCTT
T ss_pred CcCcCcCCcCCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccC--------hhhhcCcccCCEEECCCCCcCccChh
Confidence 36999999999999999999999999999999999999 9999998 788999999 9999999999999999
Q ss_pred cccCCccCceeecccCCCcccChhhcCCCccccCC
Q psy12210 371 AFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405 (405)
Q Consensus 371 ~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L 405 (405)
.|.++++|+.|+|++|+|+++++..|.++++|++|
T Consensus 73 ~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 107 (170)
T 3g39_A 73 VFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHI 107 (170)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred hccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEE
Confidence 99999999999999999999999889999988764
No 115
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.66 E-value=4.9e-16 Score=141.65 Aligned_cols=96 Identities=26% Similarity=0.378 Sum_probs=43.9
Q ss_pred ceEEcCCCCccccCC-CCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcC
Q psy12210 106 GIVDCREKGLNKVPI-LLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNL 184 (405)
Q Consensus 106 ~~l~~~~n~l~~lp~-~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l 184 (405)
+.+++++|.++.++. .-.++|+.|++++|.++.++. +..+++|+.|++++|.++.+ ..+..+++|+.|++++|.+
T Consensus 71 ~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l 146 (291)
T 1h6t_A 71 TKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKI 146 (291)
T ss_dssp CEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCC
T ss_pred CEEEccCCccCCCcccccCCCCCEEECCCCcCCCChh--hccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcC
Confidence 344444444444332 112344555555555544332 44455555555555555444 2244445555555555555
Q ss_pred cccChhhhhcccCCcEEEeecCc
Q psy12210 185 TYLPDGVFAELFRLRTLRISENS 207 (405)
Q Consensus 185 ~~l~~~~f~~l~~L~~L~l~~N~ 207 (405)
+.++ .+..+++|+.|++++|.
T Consensus 147 ~~~~--~l~~l~~L~~L~L~~N~ 167 (291)
T 1h6t_A 147 TDIT--VLSRLTKLDTLSLEDNQ 167 (291)
T ss_dssp CCCG--GGGGCTTCSEEECCSSC
T ss_pred Ccch--hhccCCCCCEEEccCCc
Confidence 5441 24445555555555444
No 116
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.63 E-value=7.1e-16 Score=129.35 Aligned_cols=106 Identities=25% Similarity=0.565 Sum_probs=100.2
Q ss_pred CCCCCCCccccCceeecCCCCCCcCCCCCCCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCc
Q psy12210 292 EPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPP 369 (405)
Q Consensus 292 ~~~~~~~~~~~l~~l~l~~n~l~~~p~~~~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~ 369 (405)
...||..|.|..+.+++++++++.+|..+++.++.|+++ |+|.+++ +..|.++++ +.|+|++|+|+.+++
T Consensus 3 ~~~CP~~C~C~~~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~--------~~~~~~l~~L~~L~Ls~N~l~~i~~ 74 (174)
T 2r9u_A 3 SAGCPSQCSCDQTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLE--------PGVFDHLVNLQQLYFNSNKLTAIPT 74 (174)
T ss_dssp CCSSCTTSEECSSEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCC--------TTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCCCCCCCEECCcEEEeCCCCCCccCCCcCCCCcEEEeCCCCccccC--------HHHhcCCcCCCEEECCCCCCCccCh
Confidence 457999999999999999999999999999999999999 9999998 788999999 999999999999999
Q ss_pred ccccCCccCceeecccCCCcccChhhcCCCccccCC
Q psy12210 370 KAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405 (405)
Q Consensus 370 ~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L 405 (405)
..|.++++|+.|+|++|+|+++++..|.++++|++|
T Consensus 75 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L 110 (174)
T 2r9u_A 75 GVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHI 110 (174)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEE
T ss_pred hHhCCcchhhEEECCCCccceeCHHHhccccCCCEE
Confidence 989999999999999999999999889999988764
No 117
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.62 E-value=1.4e-16 Score=148.31 Aligned_cols=204 Identities=13% Similarity=0.079 Sum_probs=121.4
Q ss_pred ceEEcCCCCccc--cCCCC--CCCccEEEccCCCCCCCCcccccCCCCCcEEecCCC-cceee-cccccCCCCCCCEEEc
Q psy12210 106 GIVDCREKGLNK--VPILL--PEATTELRLEQNDITELPPKAFANYKRLRRIDLSKN-QISKV-AVDAFQGLKSLTSLTL 179 (405)
Q Consensus 106 ~~l~~~~n~l~~--lp~~~--~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n-~l~~~-~~~~~~~l~~L~~L~l 179 (405)
+.+++++|.++. +|..+ .++|+.|++++|.++...+..+.++++|++|++++| .++.. .+..+.++++|++|++
T Consensus 96 ~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l 175 (336)
T 2ast_B 96 QHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNL 175 (336)
T ss_dssp CEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEEC
T ss_pred CEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcC
Confidence 566666666543 33221 246777777777666544455666777777777776 45532 2334556667777777
Q ss_pred cCC-cCccc-Chhhhhccc-CCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccC
Q psy12210 180 NNN-NLTYL-PDGVFAELF-RLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSG 256 (405)
Q Consensus 180 ~~n-~l~~l-~~~~f~~l~-~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~ 256 (405)
++| .++.. .+..+..++ +|+.|++++|.+... -..++. .+...
T Consensus 176 ~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~--------------------------------~~~l~~-~~~~~- 221 (336)
T 2ast_B 176 SWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQ--------------------------------KSDLST-LVRRC- 221 (336)
T ss_dssp CCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSC--------------------------------HHHHHH-HHHHC-
T ss_pred CCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCC--------------------------------HHHHHH-HHhhC-
Confidence 777 66642 133456666 777777776632100 000000 00000
Q ss_pred ccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCC-CCc-CCCCC--CCCceEEEEE-e
Q psy12210 257 SSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKG-LNK-VPILL--PEATTELTYM-V 331 (405)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~-l~~-~p~~~--~~~l~~L~l~-n 331 (405)
.+|+.|++++|. ++. .+..+ .++|++|+++ |
T Consensus 222 --------------------------------------------~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 222 --------------------------------------------PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp --------------------------------------------TTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred --------------------------------------------CCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 058899999988 553 23222 3789999999 7
Q ss_pred cceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCC-ccCceeecccCCCcccChhhcCC
Q psy12210 332 SIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANY-KRLRRIRLEQNDITELPPKAFAN 398 (405)
Q Consensus 332 ~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l-~~L~~L~L~~N~l~~i~~~~f~~ 398 (405)
. .+...+ ...++.+++ +.|++++| ++...+..+ .++..|++++|+++++.+..+++
T Consensus 258 ~--~~~~~~-----~~~l~~~~~L~~L~l~~~----i~~~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 258 Y--DIIPET-----LLELGEIPTLKTLQVFGI----VPDGTLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp T--TCCGGG-----GGGGGGCTTCCEEECTTS----SCTTCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred C--CCCHHH-----HHHHhcCCCCCEEeccCc----cCHHHHHHHHhhCcceEEecccCccccCCcccc
Confidence 5 232111 235778899 99999998 444445554 45888889999999988776654
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.60 E-value=4.9e-15 Score=132.90 Aligned_cols=164 Identities=15% Similarity=0.225 Sum_probs=132.2
Q ss_pred ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210 2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS 81 (405)
Q Consensus 2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~ 81 (405)
.+++++|.+++++. +..+++|+.|++++|.++.. +.+ ......+.+++++|.+.+++. +...
T Consensus 23 ~l~l~~~~i~~~~~--~~~l~~L~~L~l~~n~i~~l-------------~~l-~~l~~L~~L~L~~N~i~~~~~--l~~l 84 (263)
T 1xeu_A 23 KQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSL-------------AGM-QFFTNLKELHLSHNQISDLSP--LKDL 84 (263)
T ss_dssp HHHHTCSCTTSEEC--HHHHTTCSEEECTTSCCCCC-------------TTG-GGCTTCCEEECCSSCCCCCGG--GTTC
T ss_pred HHHhcCCCcccccc--hhhcCcCcEEECcCCCcccc-------------hHH-hhCCCCCEEECCCCccCCChh--hccC
Confidence 46788999998873 78999999999999998732 211 112234567788888887765 2211
Q ss_pred CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcce
Q psy12210 82 GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQIS 161 (405)
Q Consensus 82 ~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~ 161 (405)
. .++.+++++|+++.+|.....+++.|++++|.++.++ .+..+++|+.|++++|.++
T Consensus 85 ~---------------------~L~~L~L~~N~l~~l~~~~~~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~Ls~N~i~ 141 (263)
T 1xeu_A 85 T---------------------KLEELSVNRNRLKNLNGIPSACLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLK 141 (263)
T ss_dssp S---------------------SCCEEECCSSCCSCCTTCCCSSCCEEECCSSCCSBSG--GGTTCTTCCEEECTTSCCC
T ss_pred C---------------------CCCEEECCCCccCCcCccccCcccEEEccCCccCCCh--hhcCcccccEEECCCCcCC
Confidence 1 1389999999999998655589999999999999986 4899999999999999999
Q ss_pred eecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCcccc
Q psy12210 162 KVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFIC 210 (405)
Q Consensus 162 ~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~ 210 (405)
.++ .+..+++|+.|++++|.++.+ ..+..+++|+.|++++|++.+
T Consensus 142 ~~~--~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 142 SIV--MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp BCG--GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred CCh--HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence 985 588999999999999999998 458899999999999999763
No 119
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.60 E-value=2.5e-14 Score=135.96 Aligned_cols=223 Identities=17% Similarity=0.188 Sum_probs=156.7
Q ss_pred cCceEEcCCCCccccCCCCC--CCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccC
Q psy12210 104 ADGIVDCREKGLNKVPILLP--EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNN 181 (405)
Q Consensus 104 ~~~~l~~~~n~l~~lp~~~~--~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~ 181 (405)
.++.+.+..+ ++.++..-+ .+|+.+.+.. .++.+...+|.++.+|+.+++++|.++.++..+|. ..+|+.+.+..
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~ 212 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPV 212 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCT
T ss_pred CccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCC
Confidence 3467776554 777775433 4677888874 77888888888888888888888888888877777 47888888874
Q ss_pred CcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCccccc
Q psy12210 182 NNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMET 261 (405)
Q Consensus 182 n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~ 261 (405)
.+..++..+|..+++|+.+.+..+- ..+....|.......
T Consensus 213 -~l~~I~~~aF~~~~~L~~l~l~~~l-------------------------------------~~I~~~aF~~~~L~~-- 252 (401)
T 4fdw_A 213 -TLKEIGSQAFLKTSQLKTIEIPENV-------------------------------------STIGQEAFRESGITT-- 252 (401)
T ss_dssp -TCCEECTTTTTTCTTCCCEECCTTC-------------------------------------CEECTTTTTTCCCSE--
T ss_pred -chheehhhHhhCCCCCCEEecCCCc-------------------------------------cCccccccccCCccE--
Confidence 4888888888888888888876542 222222222110000
Q ss_pred cccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCC-----cCCCCCC---CCceEEEEEecc
Q psy12210 262 RSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLN-----KVPILLP---EATTELTYMVSI 333 (405)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~-----~~p~~~~---~~l~~L~l~n~i 333 (405)
+ .+ ...+..++..+|.... +|+.+++.++.+. .++...| ++|+.+.+.+.+
T Consensus 253 ----i---------~l-p~~i~~I~~~aF~~c~-------~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i 311 (401)
T 4fdw_A 253 ----V---------KL-PNGVTNIASRAFYYCP-------ELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESI 311 (401)
T ss_dssp ----E---------EE-ETTCCEECTTTTTTCT-------TCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTC
T ss_pred ----E---------Ee-CCCccEEChhHhhCCC-------CCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCce
Confidence 0 00 0112222233332222 6888988887665 5666666 477888888668
Q ss_pred eeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcccChhhcCCCc
Q psy12210 334 DRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYK 400 (405)
Q Consensus 334 ~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~ 400 (405)
..|+ ...|.++.+ +.++|..| ++.|...+|.++ +|+.+++.+|.+..+...+|.++.
T Consensus 312 ~~I~--------~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~ 369 (401)
T 4fdw_A 312 RILG--------QGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFP 369 (401)
T ss_dssp CEEC--------TTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSC
T ss_pred EEEh--------hhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCC
Confidence 8898 889999999 99999654 999999999999 999999999999999988888874
No 120
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.58 E-value=8.2e-16 Score=153.58 Aligned_cols=196 Identities=16% Similarity=0.195 Sum_probs=155.9
Q ss_pred ceEEcCCCCccccCC-CCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcC
Q psy12210 106 GIVDCREKGLNKVPI-LLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNL 184 (405)
Q Consensus 106 ~~l~~~~n~l~~lp~-~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l 184 (405)
..+++..+.+..++. .-...|+.|++++|.++.++. +..+++|+.|+|++|.+..+++ +..+++|+.|++++|.+
T Consensus 24 ~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l 99 (605)
T 1m9s_A 24 IKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKI 99 (605)
T ss_dssp HHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCTT--GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred HHHhccCCCcccccchhcCCCCCEEECcCCCCCCChH--HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCC
Confidence 344555566655443 123679999999999999873 8889999999999999999876 88999999999999999
Q ss_pred cccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCcccccccc
Q psy12210 185 TYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSK 264 (405)
Q Consensus 185 ~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~ 264 (405)
+.++ .+..+++|+.|++++|.+. .++ .+...
T Consensus 100 ~~l~--~l~~l~~L~~L~Ls~N~l~------------------------------------~l~--~l~~l--------- 130 (605)
T 1m9s_A 100 KDLS--SLKDLKKLKSLSLEHNGIS------------------------------------DIN--GLVHL--------- 130 (605)
T ss_dssp CCCT--TSTTCTTCCEEECTTSCCC------------------------------------CCG--GGGGC---------
T ss_pred CCCh--hhccCCCCCEEEecCCCCC------------------------------------CCc--cccCC---------
Confidence 9887 3788999999999998754 111 11111
Q ss_pred ceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCC-CCCCCceEEEEE-ecceeeeccchh
Q psy12210 265 IYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPI-LLPEATTELTYM-VSIDRVDKVLLY 342 (405)
Q Consensus 265 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~-~~~~~l~~L~l~-n~i~~i~~~~~~ 342 (405)
.+|+.|++++|.++.++. ...++|+.|+++ |.+.+++
T Consensus 131 ------------------------------------~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~----- 169 (605)
T 1m9s_A 131 ------------------------------------PQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV----- 169 (605)
T ss_dssp ------------------------------------TTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCG-----
T ss_pred ------------------------------------CccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCch-----
Confidence 159999999999998842 234799999999 9999987
Q ss_pred ccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcccChhhcCCCccc
Q psy12210 343 SYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRL 402 (405)
Q Consensus 343 ~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L 402 (405)
+ +..+++ +.|+|++|+|+.++ .+..+++|+.|+|++|.+...+...+..+..+
T Consensus 170 ---~--l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~L~~N~l~~~p~~~~~~l~~~ 223 (605)
T 1m9s_A 170 ---P--LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLNKPINHQSNLVVP 223 (605)
T ss_dssp ---G--GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEECCSEEEECCCCCCCSSCEEE
T ss_pred ---h--hccCCCCCEEECcCCCCCCCh--HHccCCCCCEEEccCCcCcCCcccccccEEec
Confidence 4 889999 99999999999984 48899999999999999998876655555443
No 121
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.58 E-value=1.1e-14 Score=135.20 Aligned_cols=217 Identities=14% Similarity=0.061 Sum_probs=138.7
Q ss_pred CCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCC----cCcccChhhhhcccCCc
Q psy12210 124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNN----NLTYLPDGVFAELFRLR 199 (405)
Q Consensus 124 ~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n----~l~~l~~~~f~~l~~L~ 199 (405)
++|+.+++.+ .++.|+..+|.++.+|+.+++++|.+..+++.+|.++.++..+....+ ....+...+|..+.+|+
T Consensus 101 ~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~ 179 (329)
T 3sb4_A 101 QTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLE 179 (329)
T ss_dssp TTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCE
T ss_pred CCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccc
Confidence 5788999988 999999999999999999999999999999999999888777776653 23445555666666666
Q ss_pred -EEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccc-cCCCcccccCccccccccceecccccCCCCC
Q psy12210 200 -TLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILD-IPEHEFKCSGSSMETRSKIYREECSTDFHPY 277 (405)
Q Consensus 200 -~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (405)
.+.+.... .+............. +....+.. +....+.. ............+
T Consensus 180 ~~i~~~~~~--------~l~~~~~~~~~~~~~--------~~~l~~~~~l~~~~~~~----------l~~~~~~L~~l~L 233 (329)
T 3sb4_A 180 TTIQVGAMG--------KLEDEIMKAGLQPRD--------INFLTIEGKLDNADFKL----------IRDYMPNLVSLDI 233 (329)
T ss_dssp EEEEECTTC--------CHHHHHHHTTCCGGG--------CSEEEEEECCCHHHHHH----------HHHHCTTCCEEEC
T ss_pred eeEEecCCC--------cHHHHHhhcccCccc--------cceEEEeeeecHHHHHH----------HHHhcCCCeEEEC
Confidence 44443221 111111111000000 00000000 00000000 0000001111122
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCCCC---Cce-EEEEEecceeeeccchhccccccccCCc
Q psy12210 278 NSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPE---ATT-ELTYMVSIDRVDKVLLYSYISNNFKRWT 353 (405)
Q Consensus 278 ~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~~~---~l~-~L~l~n~i~~i~~~~~~~~~~~~~~~l~ 353 (405)
+.+.++.++..+|.... +|+.+++..| ++.++...|. +|+ .+.+.+.++.|+ ...|.+++
T Consensus 234 ~~n~i~~I~~~aF~~~~-------~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~~l~~I~--------~~aF~~c~ 297 (329)
T 3sb4_A 234 SKTNATTIPDFTFAQKK-------YLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPASVTAIE--------FGAFMGCD 297 (329)
T ss_dssp TTBCCCEECTTTTTTCT-------TCCEEECCTT-CCEECTTTTTTCTTCCEEEEECTTCCEEC--------TTTTTTCT
T ss_pred CCCCcceecHhhhhCCC-------CCCEEECCcc-cceehHHHhhCChhccEEEEEcccceEEc--------hhhhhCCc
Confidence 23333344444333332 6999999997 9999988874 577 888888889998 89999999
Q ss_pred c-ceEEecCCCCcccCcccccCCccCceeec
Q psy12210 354 N-RSRRLEQNDITELPPKAFANYKRLRRIRL 383 (405)
Q Consensus 354 ~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 383 (405)
+ +.+++++|+|+.|+..+|.++++|+.++.
T Consensus 298 ~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 298 NLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred cCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 9 99999999999999999999999999874
No 122
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.56 E-value=8.3e-15 Score=125.49 Aligned_cols=149 Identities=13% Similarity=0.178 Sum_probs=96.2
Q ss_pred CCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEe
Q psy12210 124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRI 203 (405)
Q Consensus 124 ~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l 203 (405)
++++.|++++|.++.++ .+..+++|++|++++|.++.+. .+..+++|++|++++|.++...+..|..+++|+.|++
T Consensus 44 ~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 35677777777777666 2666777777777777665543 4666777777777777776544445666677777777
Q ss_pred ecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCccccccccceecccccCCCCCCCCCCC
Q psy12210 204 SENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVE 283 (405)
Q Consensus 204 ~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 283 (405)
++|.+.. .....+
T Consensus 120 s~n~i~~------------------------------------~~~~~l------------------------------- 132 (197)
T 4ezg_A 120 SHSAHDD------------------------------------SILTKI------------------------------- 132 (197)
T ss_dssp CSSBCBG------------------------------------GGHHHH-------------------------------
T ss_pred cCCccCc------------------------------------HhHHHH-------------------------------
Confidence 7665430 000000
Q ss_pred CCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCCCCCceEEEEE-ec-ceeeeccchhccccccccCCcc-ceEEec
Q psy12210 284 KPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYM-VS-IDRVDKVLLYSYISNNFKRWTN-RSRRLE 360 (405)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~~~~l~~L~l~-n~-i~~i~~~~~~~~~~~~~~~l~~-~~L~L~ 360 (405)
...+.|++|+++ |. +..++ .+..+++ +.|+++
T Consensus 133 -----------------------------------~~l~~L~~L~L~~n~~i~~~~----------~l~~l~~L~~L~l~ 167 (197)
T 4ezg_A 133 -----------------------------------NTLPKVNSIDLSYNGAITDIM----------PLKTLPELKSLNIQ 167 (197)
T ss_dssp -----------------------------------TTCSSCCEEECCSCTBCCCCG----------GGGGCSSCCEEECT
T ss_pred -----------------------------------hhCCCCCEEEccCCCCccccH----------hhcCCCCCCEEECC
Confidence 012356666666 65 55554 4778888 999999
Q ss_pred CCCCcccCcccccCCccCceeecccCCCcc
Q psy12210 361 QNDITELPPKAFANYKRLRRIRLEQNDITE 390 (405)
Q Consensus 361 ~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~ 390 (405)
+|+|+.++ .+..+++|+.|++++|++..
T Consensus 168 ~n~i~~~~--~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 168 FDGVHDYR--GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp TBCCCCCT--TGGGCSSCCEEEECBC----
T ss_pred CCCCcChH--HhccCCCCCEEEeeCcccCC
Confidence 99999887 47889999999999998764
No 123
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.55 E-value=1e-14 Score=124.44 Aligned_cols=102 Identities=30% Similarity=0.575 Sum_probs=66.5
Q ss_pred CCCCCccccCceeecCCCCCCcCCCCCCCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCccc
Q psy12210 294 SCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKA 371 (405)
Q Consensus 294 ~~~~~~~~~l~~l~l~~n~l~~~p~~~~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~ 371 (405)
.||..|.|.-+++++++++++.+|..+++.++.|+++ |.++.++ ..|.++++ +.|+|++|+|+.+++..
T Consensus 3 ~CP~~C~C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~~ip---------~~~~~l~~L~~L~Ls~N~i~~i~~~~ 73 (193)
T 2wfh_A 3 RCPTECTCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVP---------KELSNYKHLTLIDLSNNRISTLSNQS 73 (193)
T ss_dssp -CCTTCEEETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCCSCC---------GGGGGCTTCCEEECCSSCCCCCCTTT
T ss_pred CCCCCCEeCCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCchhH---------HHhhcccCCCEEECCCCcCCEeCHhH
Confidence 5888888888888888888888888777788888888 8777765 34555555 55555555555555555
Q ss_pred ccCCccCceeecccCCCcccChhhcCCCccccC
Q psy12210 372 FANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404 (405)
Q Consensus 372 ~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~ 404 (405)
|.++++|+.|+|++|+|+++++.+|.++++|++
T Consensus 74 f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~ 106 (193)
T 2wfh_A 74 FSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRL 106 (193)
T ss_dssp TTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCE
T ss_pred ccCCCCCCEEECCCCccCEeCHHHhCCCCCCCE
Confidence 555555555555555555555545555554443
No 124
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.54 E-value=8.4e-16 Score=142.97 Aligned_cols=216 Identities=13% Similarity=0.068 Sum_probs=120.6
Q ss_pred ceEEcCCCCccccC--CCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceee-cccccCCCCCCCEEEccCC
Q psy12210 106 GIVDCREKGLNKVP--ILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKV-AVDAFQGLKSLTSLTLNNN 182 (405)
Q Consensus 106 ~~l~~~~n~l~~lp--~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~-~~~~~~~l~~L~~L~l~~n 182 (405)
+.++++++.+..-. ....+.++.|++++|.+....+. +.++++|+.|++++|.+... .+..+..+++|++|++++|
T Consensus 50 ~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~ 128 (336)
T 2ast_B 50 QTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL 128 (336)
T ss_dssp SEEECTTCBCCHHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTC
T ss_pred eeeccccccCCHHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCc
Confidence 56677666654110 00114677777777777776654 45677777777777776643 3455667777777777777
Q ss_pred cCcccChhhhhcccCCcEEEeecC-ccccccCchHHHHHHhhcCCCCCccccCCCCCCCCC-cccccC-CCcccccCccc
Q psy12210 183 NLTYLPDGVFAELFRLRTLRISEN-SFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQ-NILDIP-EHEFKCSGSSM 259 (405)
Q Consensus 183 ~l~~l~~~~f~~l~~L~~L~l~~N-~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~l~-~~~~~~~~~~~ 259 (405)
.++...+..+..+++|+.|++++| .+.. ..+.......+ .+..+.+.+. .+.... ...+...
T Consensus 129 ~l~~~~~~~l~~~~~L~~L~L~~~~~l~~----~~l~~~~~~~~-------~L~~L~l~~~~~l~~~~~~~~~~~l---- 193 (336)
T 2ast_B 129 RLSDPIVNTLAKNSNLVRLNLSGCSGFSE----FALQTLLSSCS-------RLDELNLSWCFDFTEKHVQVAVAHV---- 193 (336)
T ss_dssp BCCHHHHHHHTTCTTCSEEECTTCBSCCH----HHHHHHHHHCT-------TCCEEECCCCTTCCHHHHHHHHHHS----
T ss_pred ccCHHHHHHHhcCCCCCEEECCCCCCCCH----HHHHHHHhcCC-------CCCEEcCCCCCCcChHHHHHHHHhc----
Confidence 776555556667777777777776 3320 01111111110 1111111111 111100 0000000
Q ss_pred cccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccc-cCceeecCCCC--CC--cCCCC--CCCCceEEEEE-e
Q psy12210 260 ETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRC-ADGIVDCREKG--LN--KVPIL--LPEATTELTYM-V 331 (405)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~l~~l~l~~n~--l~--~~p~~--~~~~l~~L~l~-n 331 (405)
. +|++|++++|. ++ .+|.. ..++|++|+++ |
T Consensus 194 -----------------------------------------~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 232 (336)
T 2ast_B 194 -----------------------------------------SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDS 232 (336)
T ss_dssp -----------------------------------------CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTC
T ss_pred -----------------------------------------ccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCC
Confidence 1 37788888873 43 23322 14678888888 7
Q ss_pred c-ceeeeccchhccccccccCCcc-ceEEecCCC-CcccCcccccCCccCceeecccC
Q psy12210 332 S-IDRVDKVLLYSYISNNFKRWTN-RSRRLEQND-ITELPPKAFANYKRLRRIRLEQN 386 (405)
Q Consensus 332 ~-i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~-i~~i~~~~~~~l~~L~~L~L~~N 386 (405)
. ++... ...+..+++ +.|++++|. +.......+.++++|+.|++++|
T Consensus 233 ~~l~~~~--------~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 233 VMLKNDC--------FQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp TTCCGGG--------GGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CcCCHHH--------HHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 6 55433 356777777 888888884 43333335777888888888887
No 125
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.54 E-value=1.6e-15 Score=143.96 Aligned_cols=99 Identities=18% Similarity=0.166 Sum_probs=71.4
Q ss_pred cCceeecCCCCCCc------CCCCC--CCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccC---
Q psy12210 302 ADGIVDCREKGLNK------VPILL--PEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELP--- 368 (405)
Q Consensus 302 ~l~~l~l~~n~l~~------~p~~~--~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~--- 368 (405)
+|++|++++|+++. +|..+ .++|+.|+++ |.+.... ... .+..+..+++ +.|+|++|+|+...
T Consensus 188 ~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g---~~~-l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 263 (386)
T 2ca6_A 188 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG---SSA-LAIALKSWPNLRELGLNDCLLSARGAAA 263 (386)
T ss_dssp TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH---HHH-HHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH---HHH-HHHHHccCCCcCEEECCCCCCchhhHHH
Confidence 58999999999982 22122 4789999999 9984211 000 0257888999 99999999999762
Q ss_pred -cccc--cCCccCceeecccCCCcc-----cChhhcCCCccccC
Q psy12210 369 -PKAF--ANYKRLRRIRLEQNDITE-----LPPKAFANYKRLRR 404 (405)
Q Consensus 369 -~~~~--~~l~~L~~L~L~~N~l~~-----i~~~~f~~l~~L~~ 404 (405)
+..+ ..+++|+.|+|++|.++. ++...+.++++|++
T Consensus 264 l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~ 307 (386)
T 2ca6_A 264 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF 307 (386)
T ss_dssp HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCE
T ss_pred HHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceE
Confidence 2345 338999999999999998 66554355666654
No 126
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.52 E-value=5.2e-14 Score=120.51 Aligned_cols=100 Identities=16% Similarity=0.147 Sum_probs=85.2
Q ss_pred ceEEcCCCCccc-cCCCC--CCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCc-ceeecccccCCCCCCCEEEccC
Q psy12210 106 GIVDCREKGLNK-VPILL--PEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQ-ISKVAVDAFQGLKSLTSLTLNN 181 (405)
Q Consensus 106 ~~l~~~~n~l~~-lp~~~--~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~-l~~~~~~~~~~l~~L~~L~l~~ 181 (405)
+.+++++|.++. .|..+ .++|++|++++|.++...+..+.++++|+.|++++|. ++.++ .+..+++|+.|++++
T Consensus 91 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~ 168 (197)
T 4ezg_A 91 ERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQF 168 (197)
T ss_dssp CEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTT
T ss_pred CEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCC
Confidence 888999999876 45444 3689999999999998777779999999999999998 88775 588999999999999
Q ss_pred CcCcccChhhhhcccCCcEEEeecCccc
Q psy12210 182 NNLTYLPDGVFAELFRLRTLRISENSFI 209 (405)
Q Consensus 182 n~l~~l~~~~f~~l~~L~~L~l~~N~l~ 209 (405)
|.++.++ .+..+++|+.|++++|++.
T Consensus 169 n~i~~~~--~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 169 DGVHDYR--GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp BCCCCCT--TGGGCSSCCEEEECBC---
T ss_pred CCCcChH--HhccCCCCCEEEeeCcccC
Confidence 9999987 4788999999999999864
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.52 E-value=2.1e-14 Score=122.43 Aligned_cols=103 Identities=31% Similarity=0.619 Sum_probs=69.9
Q ss_pred CCCCCccccCceeecCCCCCCcCCCCCCCCceEEEEE-ecceeeeccchhccccc-cccCCcc-ceEEecCCCCcccCcc
Q psy12210 294 SCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYM-VSIDRVDKVLLYSYISN-NFKRWTN-RSRRLEQNDITELPPK 370 (405)
Q Consensus 294 ~~~~~~~~~l~~l~l~~n~l~~~p~~~~~~l~~L~l~-n~i~~i~~~~~~~~~~~-~~~~l~~-~~L~L~~N~i~~i~~~ 370 (405)
.||..|.|..+.+++++++++.+|..+++.+++|+++ |++..++ +. .|+.+++ +.|+|++|+|+.+.+.
T Consensus 1 ~CP~~C~C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~--------~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 72 (192)
T 1w8a_A 1 DCPAMCHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRIS--------SDGLFGRLPHLVKLELKRNQLTGIEPN 72 (192)
T ss_dssp CCCTTSEEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBC--------CSCSGGGCTTCCEEECCSSCCCCBCTT
T ss_pred CcCCCCEECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccC--------CccccccCCCCCEEECCCCCCCCcCHh
Confidence 3788888888888888888888887777778888888 7777776 32 3555666 6666666666666555
Q ss_pred cccCCccCceeecccCCCcccChhhcCCCccccC
Q psy12210 371 AFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404 (405)
Q Consensus 371 ~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~ 404 (405)
.|.++++|+.|+|++|+|+++++..|.++++|++
T Consensus 73 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 106 (192)
T 1w8a_A 73 AFEGASHIQELQLGENKIKEISNKMFLGLHQLKT 106 (192)
T ss_dssp TTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCE
T ss_pred HcCCcccCCEEECCCCcCCccCHHHhcCCCCCCE
Confidence 5666666666666666666666555555555544
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.51 E-value=6.5e-14 Score=116.64 Aligned_cols=87 Identities=23% Similarity=0.230 Sum_probs=61.1
Q ss_pred cCCCCCCCccEEEccCCCCC--CCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcc
Q psy12210 118 VPILLPEATTELRLEQNDIT--ELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAEL 195 (405)
Q Consensus 118 lp~~~~~~L~~L~L~~n~i~--~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l 195 (405)
++...+++++.|++++|.++ .++. .+..+++|+.|++++|.++.+ ..+..+++|++|++++|.++...+..+..+
T Consensus 18 ~~~~~~~~L~~L~l~~n~l~~~~i~~-~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 94 (168)
T 2ell_A 18 LRNRTPAAVRELVLDNCKSNDGKIEG-LTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKL 94 (168)
T ss_dssp HTTSCTTSCSEEECCSCBCBTTBCSS-CCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHC
T ss_pred hccCCcccCCEEECCCCCCChhhHHH-HHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhC
Confidence 34445567888888888887 5554 367777888888888887776 557777777777777777777444555666
Q ss_pred cCCcEEEeecCc
Q psy12210 196 FRLRTLRISENS 207 (405)
Q Consensus 196 ~~L~~L~l~~N~ 207 (405)
++|+.|++++|.
T Consensus 95 ~~L~~L~Ls~N~ 106 (168)
T 2ell_A 95 PNLTHLNLSGNK 106 (168)
T ss_dssp TTCCEEECBSSS
T ss_pred CCCCEEeccCCc
Confidence 667666666665
No 129
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.47 E-value=1.2e-13 Score=114.97 Aligned_cols=86 Identities=26% Similarity=0.274 Sum_probs=75.5
Q ss_pred CCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecc-cccCCCCCCCEEEccCCcCcccCh---hhhhcccCCc
Q psy12210 124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAV-DAFQGLKSLTSLTLNNNNLTYLPD---GVFAELFRLR 199 (405)
Q Consensus 124 ~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~l~~---~~f~~l~~L~ 199 (405)
+++++|++++|.++...+..+.++++|+.|++++|.++.++. ..+..+++|+.|++++|.++.+++ ..|..+++|+
T Consensus 71 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~ 150 (168)
T 2ell_A 71 PKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLT 150 (168)
T ss_dssp SSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCC
T ss_pred CCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCc
Confidence 589999999999999666667779999999999999998753 678899999999999999999987 6788999999
Q ss_pred EEEeecCccc
Q psy12210 200 TLRISENSFI 209 (405)
Q Consensus 200 ~L~l~~N~l~ 209 (405)
.|++.+|.+.
T Consensus 151 ~L~l~~n~~~ 160 (168)
T 2ell_A 151 YLDGYDREDQ 160 (168)
T ss_dssp EETTEETTSC
T ss_pred EecCCCCChh
Confidence 9999998754
No 130
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.46 E-value=6.6e-15 Score=146.11 Aligned_cols=100 Identities=28% Similarity=0.327 Sum_probs=91.6
Q ss_pred ceEEcCCCCccccCCCCC--CCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCc
Q psy12210 106 GIVDCREKGLNKVPILLP--EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNN 183 (405)
Q Consensus 106 ~~l~~~~n~l~~lp~~~~--~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~ 183 (405)
+.+++++|.++.+|. +. ++|+.|++++|.|+.+|. .|+++++|+.|++++|.+++++ .+..+++|+.|++++|.
T Consensus 444 ~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~lp--~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 444 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVD--GVANLPRLQELLLCNNR 519 (567)
T ss_dssp SEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECCSSC
T ss_pred eEEEecCCCCCCCcC-ccccccCcEeecCcccccccch-hhhcCCCCCEEECCCCCCCCCc--ccCCCCCCcEEECCCCC
Confidence 789999999999996 53 689999999999998876 6999999999999999999975 69999999999999999
Q ss_pred CcccC-hhhhhcccCCcEEEeecCccc
Q psy12210 184 LTYLP-DGVFAELFRLRTLRISENSFI 209 (405)
Q Consensus 184 l~~l~-~~~f~~l~~L~~L~l~~N~l~ 209 (405)
++.+. +..|..+++|+.|++++|++.
T Consensus 520 l~~~~~p~~l~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 520 LQQSAAIQPLVSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp CCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred CCCCCCcHHHhcCCCCCEEEecCCcCC
Confidence 99996 667899999999999999976
No 131
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=99.45 E-value=1.8e-13 Score=108.28 Aligned_cols=112 Identities=38% Similarity=0.763 Sum_probs=89.6
Q ss_pred CCCCCccccCceEEcCCCCcc--ccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCC
Q psy12210 96 SCPHPCRCADGIVDCREKGLN--KVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKS 173 (405)
Q Consensus 96 ~~p~~~~c~~~~l~~~~n~l~--~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~ 173 (405)
.||..|.|....++|++++++ ++|..+|.+++.|+|++|.|+.++.+
T Consensus 1 ~CP~~C~C~~~~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~------------------------------- 49 (130)
T 3rfe_A 1 PCPAPCSCAGTLVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPG------------------------------- 49 (130)
T ss_dssp CCCTTCEEETTEEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTT-------------------------------
T ss_pred CcCCCCEEcCCEEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChh-------------------------------
Confidence 399999999999999999999 99987776666666666655555543
Q ss_pred CCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCC--CCCccccCCCCCCCCCcccccCCCc
Q psy12210 174 LTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPR--LGLYTKCFAPSHIKGQNILDIPEHE 251 (405)
Q Consensus 174 L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~l~~~~ 251 (405)
+|..+++|+.|++.+|++.|+|.+.|+..|+..... ....+.|..|..+.+..+.++....
T Consensus 50 -----------------~f~~l~~L~~L~L~~NP~~CdC~l~~l~~wl~~~~~~~~~~~~~C~~P~~l~g~~l~~l~~~~ 112 (130)
T 3rfe_A 50 -----------------LLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPERAPYRDLRCVAPPALRGRLLPYLAEDE 112 (130)
T ss_dssp -----------------TGGGCTTCCEEECCSSCCBCSGGGHHHHHHHHTSSCSGGGTTCBCCBSTTTTTCBGGGCCHHH
T ss_pred -----------------hhhhccccCEEEecCCCeeccCccHHHHHHHHhCcccccccCcEeCcChHHcCCCcccCCHHH
Confidence 355566666789999999999999999999887653 2346789999999999999999888
Q ss_pred cccc
Q psy12210 252 FKCS 255 (405)
Q Consensus 252 ~~~~ 255 (405)
+.|.
T Consensus 113 l~c~ 116 (130)
T 3rfe_A 113 LRAA 116 (130)
T ss_dssp HHHT
T ss_pred hhCc
Confidence 8743
No 132
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.44 E-value=2.7e-14 Score=145.96 Aligned_cols=101 Identities=26% Similarity=0.338 Sum_probs=87.3
Q ss_pred ceEEcCCCCccccCCCCC--CCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCc
Q psy12210 106 GIVDCREKGLNKVPILLP--EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNN 183 (405)
Q Consensus 106 ~~l~~~~n~l~~lp~~~~--~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~ 183 (405)
+.+++++|.+..+|..+. ++|+.|+|++|.|+.++. .|.++++|+.|+|++|.++.+ |..|.++++|++|++++|.
T Consensus 227 ~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~L~~N~ 304 (727)
T 4b8c_D 227 HALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPA-EIKNLSNLRVLDLSHNRLTSL-PAELGSCFQLKYFYFFDNM 304 (727)
T ss_dssp CEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCG-GGGGGTTCCEEECTTSCCSSC-CSSGGGGTTCSEEECCSSC
T ss_pred cEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccCh-hhhCCCCCCEEeCcCCcCCcc-ChhhcCCCCCCEEECCCCC
Confidence 889999999988887653 689999999999998775 588999999999999999976 5678889999999999999
Q ss_pred CcccChhhhhcccCCcEEEeecCccc
Q psy12210 184 LTYLPDGVFAELFRLRTLRISENSFI 209 (405)
Q Consensus 184 l~~l~~~~f~~l~~L~~L~l~~N~l~ 209 (405)
++.++.+ |..+++|+.|++++|.+.
T Consensus 305 l~~lp~~-~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 305 VTTLPWE-FGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp CCCCCSS-TTSCTTCCCEECTTSCCC
T ss_pred CCccChh-hhcCCCccEEeCCCCccC
Confidence 9988875 788999999999999875
No 133
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.43 E-value=2.8e-12 Score=121.86 Aligned_cols=72 Identities=25% Similarity=0.394 Sum_probs=53.9
Q ss_pred CCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCc
Q psy12210 134 NDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENS 207 (405)
Q Consensus 134 n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~ 207 (405)
..+..+...+|.++.+|+.+.+.++ +..+...+|.++.+|+.+.+..+ ++.+...+|..+..|+.+.+..+.
T Consensus 148 ~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~ 219 (394)
T 4fs7_A 148 EGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSL 219 (394)
T ss_dssp TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTC
T ss_pred ccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCc
Confidence 4455566667888888888888754 45677788888888888888765 777888888888888877766554
No 134
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.43 E-value=2.4e-13 Score=110.78 Aligned_cols=98 Identities=26% Similarity=0.311 Sum_probs=76.1
Q ss_pred ceEEcCCCCccccCCCC--CCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeec-ccccCCCCCCCEEEccCC
Q psy12210 106 GIVDCREKGLNKVPILL--PEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVA-VDAFQGLKSLTSLTLNNN 182 (405)
Q Consensus 106 ~~l~~~~n~l~~lp~~~--~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~-~~~~~~l~~L~~L~l~~n 182 (405)
+.+++++|.++.+ ..+ .+++++|++++|.++...+..+.++++|+.|++++|.++.++ +..+..+++|++|++++|
T Consensus 45 ~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N 123 (149)
T 2je0_A 45 EFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123 (149)
T ss_dssp CEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTC
T ss_pred cEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCC
Confidence 4444444444444 112 257899999999999865666777899999999999998864 367888999999999999
Q ss_pred cCcccCh---hhhhcccCCcEEEee
Q psy12210 183 NLTYLPD---GVFAELFRLRTLRIS 204 (405)
Q Consensus 183 ~l~~l~~---~~f~~l~~L~~L~l~ 204 (405)
.++.+++ ..+..+++|+.|+++
T Consensus 124 ~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 124 EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred cccchHHHHHHHHHHCCCcccccCC
Confidence 9998887 678889999998875
No 135
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.40 E-value=8.4e-14 Score=142.38 Aligned_cols=98 Identities=29% Similarity=0.348 Sum_probs=48.0
Q ss_pred ceEEcCCCCccccCCCCCCCccEEEccCCCCCC---------CCcccccCCCCCcEEecCCCcceeecccccCCCCCCCE
Q psy12210 106 GIVDCREKGLNKVPILLPEATTELRLEQNDITE---------LPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTS 176 (405)
Q Consensus 106 ~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~---------l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~ 176 (405)
+.+++.++.+...|..+ ++.++|+.+.|.. +++..|..+..|+.|+|++|.+..+++. +..+++|++
T Consensus 176 ~~l~L~~n~~~~~~~~~---l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~-~~~l~~L~~ 251 (727)
T 4b8c_D 176 PKIELFANGKDEANQAL---LQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISAN-IFKYDFLTR 251 (727)
T ss_dssp -------------------------------------------------CCCCCCEEECTTSCCSCCCGG-GGGCCSCSC
T ss_pred ceEEeeCCCCCcchhhH---hhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChh-hcCCCCCCE
Confidence 66677777776665433 2333334333332 3355677888888888888888877654 447888888
Q ss_pred EEccCCcCcccChhhhhcccCCcEEEeecCcc
Q psy12210 177 LTLNNNNLTYLPDGVFAELFRLRTLRISENSF 208 (405)
Q Consensus 177 L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l 208 (405)
|++++|.|+.++. .|..+++|+.|++++|.+
T Consensus 252 L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l 282 (727)
T 4b8c_D 252 LYLNGNSLTELPA-EIKNLSNLRVLDLSHNRL 282 (727)
T ss_dssp CBCTTSCCSCCCG-GGGGGTTCCEEECTTSCC
T ss_pred EEeeCCcCcccCh-hhhCCCCCCEEeCcCCcC
Confidence 8888888887775 467788888888888874
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.39 E-value=3.3e-13 Score=113.30 Aligned_cols=103 Identities=19% Similarity=0.224 Sum_probs=87.2
Q ss_pred ceEEcCCCCccccCCCC--CCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecc-cccCCCCCCCEEEccCC
Q psy12210 106 GIVDCREKGLNKVPILL--PEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAV-DAFQGLKSLTSLTLNNN 182 (405)
Q Consensus 106 ~~l~~~~n~l~~lp~~~--~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~~l~~L~~L~l~~n 182 (405)
+.+++++|.++.++ .+ .+++++|++++|.++.+++..|..+++|+.|++++|.++.++. ..+..+++|+.|++++|
T Consensus 45 ~~L~Ls~N~l~~~~-~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N 123 (176)
T 1a9n_A 45 DAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123 (176)
T ss_dssp SEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSS
T ss_pred CEEECCCCCCCccc-ccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCC
Confidence 77788888877773 33 3589999999999999988777899999999999999988764 36888999999999999
Q ss_pred cCcccChh---hhhcccCCcEEEeecCccc
Q psy12210 183 NLTYLPDG---VFAELFRLRTLRISENSFI 209 (405)
Q Consensus 183 ~l~~l~~~---~f~~l~~L~~L~l~~N~l~ 209 (405)
.++.++.. ++..+++|+.|++++|...
T Consensus 124 ~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 124 PVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp GGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 99988865 5788999999999998754
No 137
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.37 E-value=8.8e-14 Score=139.37 Aligned_cols=87 Identities=8% Similarity=-0.040 Sum_probs=61.0
Q ss_pred cCceeecCCCC--CCcCC-C---CCCCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCc-ccc
Q psy12210 302 ADGIVDCREKG--LNKVP-I---LLPEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPP-KAF 372 (405)
Q Consensus 302 ~l~~l~l~~n~--l~~~p-~---~~~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~-~~~ 372 (405)
+|+.|+++++. ++... . ...++|++|+++ |.+++.. .+..+.++++ +.|+|++|.++.... ..+
T Consensus 437 ~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-------~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 509 (592)
T 3ogk_B 437 KLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEG-------LMEFSRGCPNLQKLEMRGCCFSERAIAAAV 509 (592)
T ss_dssp TCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHH-------HHHHHTCCTTCCEEEEESCCCBHHHHHHHH
T ss_pred CCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHH-------HHHHHhcCcccCeeeccCCCCcHHHHHHHH
Confidence 68999997543 43211 1 124689999999 9887532 0244577889 999999999875432 334
Q ss_pred cCCccCceeecccCCCcccChhh
Q psy12210 373 ANYKRLRRIRLEQNDITELPPKA 395 (405)
Q Consensus 373 ~~l~~L~~L~L~~N~l~~i~~~~ 395 (405)
..+++|+.|+|++|+++......
T Consensus 510 ~~l~~L~~L~ls~n~it~~~~~~ 532 (592)
T 3ogk_B 510 TKLPSLRYLWVQGYRASMTGQDL 532 (592)
T ss_dssp HHCSSCCEEEEESCBCCTTCTTG
T ss_pred HhcCccCeeECcCCcCCHHHHHH
Confidence 57899999999999988765443
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.37 E-value=1.3e-12 Score=109.69 Aligned_cols=81 Identities=30% Similarity=0.419 Sum_probs=62.9
Q ss_pred CCccEEEccCCCCCCCCcccccCCC-CCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEE
Q psy12210 124 EATTELRLEQNDITELPPKAFANYK-RLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLR 202 (405)
Q Consensus 124 ~~L~~L~L~~n~i~~l~~~~~~~l~-~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~ 202 (405)
.+++.|++++|.++.++. +..+. +|+.|++++|.++.+ ..|..+++|++|++++|.++.++++.|..+++|+.|+
T Consensus 19 ~~L~~L~l~~n~l~~i~~--~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVIEN--LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp TSCEEEECTTSCCCSCCC--GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred CCceEEEeeCCCCchhHH--hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 578888888888887743 44444 888888888888887 4578888888888888888888877777777788777
Q ss_pred eecCcc
Q psy12210 203 ISENSF 208 (405)
Q Consensus 203 l~~N~l 208 (405)
+++|.+
T Consensus 95 L~~N~i 100 (176)
T 1a9n_A 95 LTNNSL 100 (176)
T ss_dssp CCSCCC
T ss_pred CCCCcC
Confidence 777763
No 139
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.36 E-value=1.9e-12 Score=105.41 Aligned_cols=81 Identities=17% Similarity=0.223 Sum_probs=52.2
Q ss_pred CCccEEEccCCCCC--CCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEE
Q psy12210 124 EATTELRLEQNDIT--ELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTL 201 (405)
Q Consensus 124 ~~L~~L~L~~n~i~--~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L 201 (405)
++++.|++++|.++ .++. .+..+++|+.|++++|.++.+ ..+..+++|++|++++|.++...+..+..+++|+.|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 46777777777776 4443 456677777777777777666 446666677777777777666444455556666666
Q ss_pred EeecCc
Q psy12210 202 RISENS 207 (405)
Q Consensus 202 ~l~~N~ 207 (405)
++++|.
T Consensus 94 ~ls~N~ 99 (149)
T 2je0_A 94 NLSGNK 99 (149)
T ss_dssp ECTTSC
T ss_pred ECCCCc
Confidence 665554
No 140
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.35 E-value=3.1e-13 Score=134.06 Aligned_cols=175 Identities=15% Similarity=0.119 Sum_probs=126.2
Q ss_pred ccccCCCcCccCCchhhccccccceEEccCCc-------------ccccchh--hHHHHHHhhCCCcc------------
Q psy12210 2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENS-------------FICDCHL--SWLHRWLKRYPRLG------------ 54 (405)
Q Consensus 2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~-------------~~~~~~~--~~l~~~~~~~~~~~------------ 54 (405)
.|+|++|+|+.+|. .++++++|+.|++++|. +.+..+. ..+ ..+..+....
T Consensus 353 ~L~Ls~n~L~~Lp~-~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l-~~L~~L~~l~~n~~~~L~~l~l 430 (567)
T 1dce_A 353 RCELSVEKSTVLQS-ELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYF-STLKAVDPMRAAYLDDLRSKFL 430 (567)
T ss_dssp SCCCCHHHHHHHHH-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHH-HHHHHHCGGGHHHHHHHHHHHH
T ss_pred eccCChhhHHhhHH-HHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHH-HhcccCcchhhcccchhhhhhh
Confidence 68999999998866 58999999999997764 2221110 000 0111111000
Q ss_pred ------c-cccccCCCcccCCcccccCCCccccCCCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCCCCC--CC
Q psy12210 55 ------L-YTKCFAPSHIKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLP--EA 125 (405)
Q Consensus 55 ------~-~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~~~~--~~ 125 (405)
. .......+++++|.++.++. +.... .++.+++++|.++.+|..+. ++
T Consensus 431 ~~n~i~~l~~~~L~~L~Ls~n~l~~lp~--~~~l~---------------------~L~~L~Ls~N~l~~lp~~~~~l~~ 487 (567)
T 1dce_A 431 LENSVLKMEYADVRVLHLAHKDLTVLCH--LEQLL---------------------LVTHLDLSHNRLRALPPALAALRC 487 (567)
T ss_dssp HHHHHHHHHHTTCSEEECTTSCCSSCCC--GGGGT---------------------TCCEEECCSSCCCCCCGGGGGCTT
T ss_pred hcccccccCccCceEEEecCCCCCCCcC--ccccc---------------------cCcEeecCcccccccchhhhcCCC
Confidence 0 00012345666666666653 22111 13999999999999997663 79
Q ss_pred ccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeec-ccccCCCCCCCEEEccCCcCcccChh---hhhcccCCcEE
Q psy12210 126 TTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVA-VDAFQGLKSLTSLTLNNNNLTYLPDG---VFAELFRLRTL 201 (405)
Q Consensus 126 L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~l~~~---~f~~l~~L~~L 201 (405)
|+.|++++|.|+.++ .++++++|+.|++++|.++++. |..+..+++|+.|++++|.++.+++. .+..+++|+.|
T Consensus 488 L~~L~Ls~N~l~~lp--~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 488 LEVLQASDNALENVD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp CCEEECCSSCCCCCG--GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred CCEEECCCCCCCCCc--ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCcc
Confidence 999999999999987 5999999999999999999997 78899999999999999999988753 34568899998
Q ss_pred Ee
Q psy12210 202 RI 203 (405)
Q Consensus 202 ~l 203 (405)
++
T Consensus 566 ~l 567 (567)
T 1dce_A 566 LT 567 (567)
T ss_dssp EC
T ss_pred CC
Confidence 64
No 141
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.30 E-value=3.5e-12 Score=119.04 Aligned_cols=100 Identities=23% Similarity=0.423 Sum_probs=91.3
Q ss_pred CCCCc-cccCceeecCCC-CCCcCCCCCC--CCceEEEEE--ecceeeeccchhccccccccCCcc-ceEEecCCCCccc
Q psy12210 295 CPHPC-RCADGIVDCREK-GLNKVPILLP--EATTELTYM--VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITEL 367 (405)
Q Consensus 295 ~~~~~-~~~l~~l~l~~n-~l~~~p~~~~--~~l~~L~l~--n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i 367 (405)
||..| .|.-..++++++ +|+.+|. ++ ++|+.|+|+ |.+..++ +..|.++++ +.|+|++|+|+.+
T Consensus 1 cp~~c~~C~~~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~--------~~~~~~l~~L~~L~l~~N~l~~~ 71 (347)
T 2ifg_A 1 CPDACCPHGSSGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLE--------LRDLRGLGELRNLTIVKSGLRFV 71 (347)
T ss_dssp CCSSSCCSSSSCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEEC--------GGGSCSCCCCSEEECCSSCCCEE
T ss_pred CCCcCccccCCEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcC--------hhHhccccCCCEEECCCCcccee
Confidence 88999 999999999998 9999998 65 469999997 8999999 888999999 9999999999999
Q ss_pred CcccccCCccCceeecccCCCcccChhhcCCCccccC
Q psy12210 368 PPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404 (405)
Q Consensus 368 ~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~ 404 (405)
++.+|.++++|+.|+|++|+|+++++..|..++ |++
T Consensus 72 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~ 107 (347)
T 2ifg_A 72 APDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQE 107 (347)
T ss_dssp CTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCE
T ss_pred CHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceE
Confidence 999999999999999999999999998887765 554
No 142
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.25 E-value=2e-10 Score=109.10 Aligned_cols=92 Identities=21% Similarity=0.315 Sum_probs=59.1
Q ss_pred cCceeecCCCCCCcCCCCCC---CCceEEEEEecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCcc
Q psy12210 302 ADGIVDCREKGLNKVPILLP---EATTELTYMVSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKR 377 (405)
Q Consensus 302 ~l~~l~l~~n~l~~~p~~~~---~~l~~L~l~n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~ 377 (405)
.++.+.+.. .++.+....+ +.|+.+.+.+.+..|+ ...|.++.+ +.++|.. .++.|...+|.+|.+
T Consensus 266 ~L~~i~lp~-~~~~I~~~aF~~c~~L~~i~l~~~i~~I~--------~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 266 YLASVKMPD-SVVSIGTGAFMNCPALQDIEFSSRITELP--------ESVFAGCISLKSIDIPE-GITQILDDAFAGCEQ 335 (394)
T ss_dssp SCCEEECCT-TCCEECTTTTTTCTTCCEEECCTTCCEEC--------TTTTTTCTTCCEEECCT-TCCEECTTTTTTCTT
T ss_pred cccEEeccc-ccceecCcccccccccccccCCCcccccC--------ceeecCCCCcCEEEeCC-cccEehHhHhhCCCC
Confidence 455565543 2334444443 3566666666666676 667777777 7777764 377777777777777
Q ss_pred CceeecccCCCcccChhhcCCCccccC
Q psy12210 378 LRRIRLEQNDITELPPKAFANYKRLRR 404 (405)
Q Consensus 378 L~~L~L~~N~l~~i~~~~f~~l~~L~~ 404 (405)
|+.+.|..+ ++.|...+|.++++|+.
T Consensus 336 L~~i~ip~s-v~~I~~~aF~~C~~L~~ 361 (394)
T 4gt6_A 336 LERIAIPSS-VTKIPESAFSNCTALNN 361 (394)
T ss_dssp CCEEEECTT-CCBCCGGGGTTCTTCCE
T ss_pred CCEEEECcc-cCEEhHhHhhCCCCCCE
Confidence 777777543 77777777777777653
No 143
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.22 E-value=1.1e-12 Score=131.28 Aligned_cols=80 Identities=5% Similarity=0.002 Sum_probs=53.5
Q ss_pred cCceeecCCCCCCcCC-CC---CCCCceEEEEE-ecceeeeccchhccccccc-cCCcc-ceEEecCCCCcccCcc-ccc
Q psy12210 302 ADGIVDCREKGLNKVP-IL---LPEATTELTYM-VSIDRVDKVLLYSYISNNF-KRWTN-RSRRLEQNDITELPPK-AFA 373 (405)
Q Consensus 302 ~l~~l~l~~n~l~~~p-~~---~~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~-~~l~~-~~L~L~~N~i~~i~~~-~~~ 373 (405)
+|+.|++++ .++... .. ..++|+.|+++ |.+++.. ...+ .++++ +.|+|++|.++..... ...
T Consensus 433 ~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~--------~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~ 503 (594)
T 2p1m_B 433 DLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLG--------MHHVLSGCDSLRKLEIRDCPFGDKALLANAS 503 (594)
T ss_dssp TCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHH--------HHHHHHHCTTCCEEEEESCSCCHHHHHHTGG
T ss_pred CccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHH--------HHHHHhcCCCcCEEECcCCCCcHHHHHHHHH
Confidence 577888866 444321 11 14678889998 8876543 2233 56788 9999999988655433 345
Q ss_pred CCccCceeecccCCCcc
Q psy12210 374 NYKRLRRIRLEQNDITE 390 (405)
Q Consensus 374 ~l~~L~~L~L~~N~l~~ 390 (405)
.+++|+.|++++|.++.
T Consensus 504 ~l~~L~~L~l~~~~~~~ 520 (594)
T 2p1m_B 504 KLETMRSLWMSSCSVSF 520 (594)
T ss_dssp GGGGSSEEEEESSCCBH
T ss_pred hCCCCCEEeeeCCCCCH
Confidence 57899999999998743
No 144
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.20 E-value=1.8e-10 Score=109.43 Aligned_cols=91 Identities=9% Similarity=0.189 Sum_probs=70.2
Q ss_pred cCceeecCCCCCCcCCCCCC---CCceEEEEEecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCcc
Q psy12210 302 ADGIVDCREKGLNKVPILLP---EATTELTYMVSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKR 377 (405)
Q Consensus 302 ~l~~l~l~~n~l~~~p~~~~---~~l~~L~l~n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~ 377 (405)
+|+.+.+.. .++.++...| .+|+.+.+.+.++.|+ ..+|.++.+ +.+++..| ++.|...+|.+|++
T Consensus 298 ~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~v~~I~--------~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~ 367 (394)
T 4fs7_A 298 SLTEVKLLD-SVKFIGEEAFESCTSLVSIDLPYLVEEIG--------KRSFRGCTSLSNINFPLS-LRKIGANAFQGCIN 367 (394)
T ss_dssp TCCEEEECT-TCCEECTTTTTTCTTCCEECCCTTCCEEC--------TTTTTTCTTCCEECCCTT-CCEECTTTBTTCTT
T ss_pred ccccccccc-ccceechhhhcCCCCCCEEEeCCcccEEh--------HHhccCCCCCCEEEECcc-ccEehHHHhhCCCC
Confidence 577777764 4777776666 4677777775588888 788999888 88988876 88898888999999
Q ss_pred CceeecccCCCcccChhhcCCCccccC
Q psy12210 378 LRRIRLEQNDITELPPKAFANYKRLRR 404 (405)
Q Consensus 378 L~~L~L~~N~l~~i~~~~f~~l~~L~~ 404 (405)
|+.+++..+ ++.+. .+|.++++|+.
T Consensus 368 L~~i~lp~~-~~~~~-~~F~~c~~L~~ 392 (394)
T 4fs7_A 368 LKKVELPKR-LEQYR-YDFEDTTKFKW 392 (394)
T ss_dssp CCEEEEEGG-GGGGG-GGBCTTCEEEE
T ss_pred CCEEEECCC-CEEhh-heecCCCCCcE
Confidence 999998764 55553 56888888875
No 145
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.19 E-value=1.6e-12 Score=130.25 Aligned_cols=81 Identities=15% Similarity=0.205 Sum_probs=56.1
Q ss_pred CCccEEEccCCCCCCCCc----ccccCCCCCcEEecCCCcceeec----ccccCCCCCCCEEEccCCcCcccChhhhhcc
Q psy12210 124 EATTELRLEQNDITELPP----KAFANYKRLRRIDLSKNQISKVA----VDAFQGLKSLTSLTLNNNNLTYLPDGVFAEL 195 (405)
Q Consensus 124 ~~L~~L~L~~n~i~~l~~----~~~~~l~~L~~L~ls~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l 195 (405)
++|++|++++|.+++... ..+..+++|+.|++++|.++.+. +..+.++++|+.|++++|.+..++ ..+..+
T Consensus 164 ~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~~ 242 (592)
T 3ogk_B 164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV-GFFKAA 242 (592)
T ss_dssp TTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGH-HHHHHC
T ss_pred CCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHH-HHHhhh
Confidence 467888888887765532 13456778888888888776332 233456778888888888877766 457778
Q ss_pred cCCcEEEeec
Q psy12210 196 FRLRTLRISE 205 (405)
Q Consensus 196 ~~L~~L~l~~ 205 (405)
++|+.|+++.
T Consensus 243 ~~L~~L~l~~ 252 (592)
T 3ogk_B 243 ANLEEFCGGS 252 (592)
T ss_dssp TTCCEEEECB
T ss_pred hHHHhhcccc
Confidence 8888888875
No 146
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.18 E-value=3.7e-13 Score=115.23 Aligned_cols=95 Identities=25% Similarity=0.295 Sum_probs=54.2
Q ss_pred ceEEcCCCCccccCCCCC--CCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecc-cccCCCCCCCEEEccCC
Q psy12210 106 GIVDCREKGLNKVPILLP--EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAV-DAFQGLKSLTSLTLNNN 182 (405)
Q Consensus 106 ~~l~~~~n~l~~lp~~~~--~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~~l~~L~~L~l~~n 182 (405)
+.+++++|.++.+|..+. ++++.|++++|.++.++ .+..+++|+.|++++|.++.+++ ..+..+++|++|++++|
T Consensus 73 ~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 73 RILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp CEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred CEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC--ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCC
Confidence 455555555555553221 45666666666666654 35566666666666666665543 34566666666666666
Q ss_pred cCcccCh----------hhhhcccCCcEEE
Q psy12210 183 NLTYLPD----------GVFAELFRLRTLR 202 (405)
Q Consensus 183 ~l~~l~~----------~~f~~l~~L~~L~ 202 (405)
.+....+ ..+..+++|+.|+
T Consensus 151 ~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 151 PLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred ccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 6644432 2355566666664
No 147
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.15 E-value=4.6e-13 Score=114.63 Aligned_cols=61 Identities=8% Similarity=0.010 Sum_probs=45.3
Q ss_pred CCceEEEEE-ecceeeeccchhcccc-ccccCCcc-ceEEecCCCCcccCcc----------cccCCccCceeecccCCC
Q psy12210 322 EATTELTYM-VSIDRVDKVLLYSYIS-NNFKRWTN-RSRRLEQNDITELPPK----------AFANYKRLRRIRLEQNDI 388 (405)
Q Consensus 322 ~~l~~L~l~-n~i~~i~~~~~~~~~~-~~~~~l~~-~~L~L~~N~i~~i~~~----------~~~~l~~L~~L~L~~N~l 388 (405)
+++++|+++ |++..++ . ..+..+++ +.|++++|.+....+. .+..+++|+.|| +|.+
T Consensus 115 ~~L~~L~l~~N~i~~~~--------~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i 184 (198)
T 1ds9_A 115 VNLRVLYMSNNKITNWG--------EIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPV 184 (198)
T ss_dssp HHSSEEEESEEECCCHH--------HHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGG
T ss_pred CCCCEEECCCCcCCchh--------HHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--Cccc
Confidence 367778888 8887766 2 46788899 9999999998776543 377789999887 6666
Q ss_pred cccC
Q psy12210 389 TELP 392 (405)
Q Consensus 389 ~~i~ 392 (405)
+...
T Consensus 185 ~~~e 188 (198)
T 1ds9_A 185 DVDE 188 (198)
T ss_dssp TTTT
T ss_pred CHHH
Confidence 5543
No 148
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.13 E-value=2.1e-09 Score=101.34 Aligned_cols=68 Identities=15% Similarity=0.265 Sum_probs=38.7
Q ss_pred CCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecC
Q psy12210 135 DITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISEN 206 (405)
Q Consensus 135 ~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N 206 (405)
.++.+...+|... +|+.+.++.+ ++.+...+|.++ +++.+.+.. .++.+...+|....+++.+.+..+
T Consensus 101 ~l~~I~~~aF~~~-~L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~-~v~~i~~~~f~~~~~l~~~~~~~~ 168 (379)
T 4h09_A 101 RVKKFGDYVFQGT-DLDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPK-SVTTIKDGIGYKAENLEKIEVSSN 168 (379)
T ss_dssp TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEEECT-TCCEECSCTTTTCTTCCEEEECTT
T ss_pred eeeEeccceeccC-CcccccCCCc-cccccccccccc-eeeeeeccc-eeeccccchhcccccccccccccc
Confidence 3555555556543 6777776643 445555556554 455555543 355566666666667766665543
No 149
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.11 E-value=1.1e-11 Score=124.20 Aligned_cols=79 Identities=10% Similarity=0.056 Sum_probs=56.1
Q ss_pred cCceeecCCCCCCcCCC----CCCCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccc-cC
Q psy12210 302 ADGIVDCREKGLNKVPI----LLPEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAF-AN 374 (405)
Q Consensus 302 ~l~~l~l~~n~l~~~p~----~~~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~-~~ 374 (405)
+|+.|++++|.++.... ...++|+.|+++ |.+.... . ......+++ +.|++++|+++......+ ..
T Consensus 457 ~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~---~----~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~ 529 (594)
T 2p1m_B 457 KMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKA---L----LANASKLETMRSLWMSSCSVSFGACKLLGQK 529 (594)
T ss_dssp TCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHH---H----HHTGGGGGGSSEEEEESSCCBHHHHHHHHHH
T ss_pred hccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHH---H----HHHHHhCCCCCEEeeeCCCCCHHHHHHHHHh
Confidence 69999999999864321 125789999999 9885433 0 123455788 999999999865544444 55
Q ss_pred CccCceeecccCC
Q psy12210 375 YKRLRRIRLEQND 387 (405)
Q Consensus 375 l~~L~~L~L~~N~ 387 (405)
+|+|+...+..+.
T Consensus 530 lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 530 MPKLNVEVIDERG 542 (594)
T ss_dssp CTTEEEEEECSSS
T ss_pred CCCCEEEEecCCC
Confidence 7888887777664
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.11 E-value=2.2e-09 Score=101.79 Aligned_cols=234 Identities=16% Similarity=0.204 Sum_probs=131.0
Q ss_pred CCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEe
Q psy12210 124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRI 203 (405)
Q Consensus 124 ~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l 203 (405)
.+|+.+.+. +.++.+....|..+..|+.+.+..+ ++.+...+|.+ .+|+.+.+..+ +..+...+|..+.+++....
T Consensus 137 ~~L~~i~lp-~~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~-~~~i~~~af~~c~~l~~~~~ 212 (394)
T 4gt6_A 137 EELDTVTIP-EGVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAK-VTRIGTNAFSECFALSTITS 212 (394)
T ss_dssp TTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTT-CCEECTTTTTTCTTCCEEEE
T ss_pred ccccccccc-ceeeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCc-ccccccchhhhccccceecc
Confidence 456677764 4466667777777777777777654 66666666754 46777777543 45555666777777776655
Q ss_pred ecCccccc-------cCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCccccc-CccccccccceecccccCCC
Q psy12210 204 SENSFICD-------CHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS-GSSMETRSKIYREECSTDFH 275 (405)
Q Consensus 204 ~~N~l~~~-------~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 275 (405)
..+..... +..... .....+.......... ...+..+....|... .... .
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i-----p~~v~~i~~~aF~~c~~L~~------i--------- 270 (394)
T 4gt6_A 213 DSESYPAIDNVLYEKSANGDY--ALIRYPSQREDPAFKI-----PNGVARIETHAFDSCAYLAS------V--------- 270 (394)
T ss_dssp CCSSSCBSSSCEEEECTTSCE--EEEECCTTCCCSEEEC-----CTTEEEECTTTTTTCSSCCE------E---------
T ss_pred cccccccccceeecccccccc--cccccccccccceEEc-----CCcceEcccceeeecccccE------E---------
Confidence 44332110 000000 0000000000000000 011223333333211 0000 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCCC---CCceEEEEEecceeeeccchhccccccccCC
Q psy12210 276 PYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLP---EATTELTYMVSIDRVDKVLLYSYISNNFKRW 352 (405)
Q Consensus 276 ~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~~---~~l~~L~l~n~i~~i~~~~~~~~~~~~~~~l 352 (405)
.++ ..+..+...++.... .|+.+.+. +.++.++...| .+|+.+.+.+.++.|. ..+|.++
T Consensus 271 ~lp-~~~~~I~~~aF~~c~-------~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~--------~~aF~~C 333 (394)
T 4gt6_A 271 KMP-DSVVSIGTGAFMNCP-------ALQDIEFS-SRITELPESVFAGCISLKSIDIPEGITQIL--------DDAFAGC 333 (394)
T ss_dssp ECC-TTCCEECTTTTTTCT-------TCCEEECC-TTCCEECTTTTTTCTTCCEEECCTTCCEEC--------TTTTTTC
T ss_pred ecc-cccceecCccccccc-------ccccccCC-CcccccCceeecCCCCcCEEEeCCcccEeh--------HhHhhCC
Confidence 000 001112222222211 57888886 57888888877 4788888886688898 8899999
Q ss_pred cc-ceEEecCCCCcccCcccccCCccCceeecccCCCcccChhhcCCCccccC
Q psy12210 353 TN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404 (405)
Q Consensus 353 ~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~ 404 (405)
.+ +.+.+.. .++.|...+|.+|++|+.+++.++.... ..|...++|+.
T Consensus 334 ~~L~~i~ip~-sv~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~ 382 (394)
T 4gt6_A 334 EQLERIAIPS-SVTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQN 382 (394)
T ss_dssp TTCCEEEECT-TCCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC--
T ss_pred CCCCEEEECc-ccCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCE
Confidence 99 9999975 4999999999999999999999875322 34555555543
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.92 E-value=1.1e-07 Score=89.46 Aligned_cols=91 Identities=22% Similarity=0.263 Sum_probs=71.0
Q ss_pred cCceeecCCCCCCcCCCCCC---CCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCc
Q psy12210 302 ADGIVDCREKGLNKVPILLP---EATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYK 376 (405)
Q Consensus 302 ~l~~l~l~~n~l~~~p~~~~---~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~ 376 (405)
.++.+.+.. .++.++...| .+|+.+.+. +.++.|+ ...|.++.+ +.+.|.. .++.|...+|.+|.
T Consensus 264 ~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~--------~~aF~~c~~L~~i~lp~-~l~~I~~~aF~~C~ 333 (379)
T 4h09_A 264 ALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLE--------PRVFMDCVKLSSVTLPT-ALKTIQVYAFKNCK 333 (379)
T ss_dssp TCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEEC--------TTTTTTCTTCCEEECCT-TCCEECTTTTTTCT
T ss_pred hhccccccc-cceeccccccccccccccccccccccceeh--------hhhhcCCCCCCEEEcCc-cccEEHHHHhhCCC
Confidence 466666653 4666666665 478888888 7888888 788999988 9999975 48889888899999
Q ss_pred cCceeecccCCCcccChhhcCCCcccc
Q psy12210 377 RLRRIRLEQNDITELPPKAFANYKRLR 403 (405)
Q Consensus 377 ~L~~L~L~~N~l~~i~~~~f~~l~~L~ 403 (405)
+|+.+.+..+ ++.|...+|.+++.++
T Consensus 334 ~L~~i~ip~~-v~~I~~~aF~~c~~~~ 359 (379)
T 4h09_A 334 ALSTISYPKS-ITLIESGAFEGSSITK 359 (379)
T ss_dssp TCCCCCCCTT-CCEECTTTTTTSSCCC
T ss_pred CCCEEEECCc-cCEEchhHhhCCCCCc
Confidence 9999998764 8888888888876543
No 152
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.91 E-value=2.1e-10 Score=107.84 Aligned_cols=104 Identities=15% Similarity=0.093 Sum_probs=66.6
Q ss_pred ceEEcCCCCccccCCC--------CCCCccEEEccCCCCCCCCccc----ccCCCCCcEEecCCCcceeec----ccccC
Q psy12210 106 GIVDCREKGLNKVPIL--------LPEATTELRLEQNDITELPPKA----FANYKRLRRIDLSKNQISKVA----VDAFQ 169 (405)
Q Consensus 106 ~~l~~~~n~l~~lp~~--------~~~~L~~L~L~~n~i~~l~~~~----~~~l~~L~~L~ls~n~l~~~~----~~~~~ 169 (405)
+.+++++|.++..... ....|+.|++++|.|+...... +...++|++|++++|.++... ...+.
T Consensus 129 ~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~ 208 (372)
T 3un9_A 129 RKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLD 208 (372)
T ss_dssp EEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGG
T ss_pred cHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHh
Confidence 5566666665433211 1246788888888876543322 356777888888888877543 34456
Q ss_pred CCCCCCEEEccCCcCcccChhh----hhcccCCcEEEeecCccc
Q psy12210 170 GLKSLTSLTLNNNNLTYLPDGV----FAELFRLRTLRISENSFI 209 (405)
Q Consensus 170 ~l~~L~~L~l~~n~l~~l~~~~----f~~l~~L~~L~l~~N~l~ 209 (405)
..++|+.|++++|.++...... +...++|+.|++++|.+.
T Consensus 209 ~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 209 RNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp GCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred cCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 6677888888888877654333 334577888888888765
No 153
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.86 E-value=1e-10 Score=110.00 Aligned_cols=87 Identities=18% Similarity=0.207 Sum_probs=57.3
Q ss_pred CCCccEEEccCCCCCCCCcccccCC-----CCCcEEecCCCcceeeccccc-CCCCCCCEEEccCCcCcccChhhhh---
Q psy12210 123 PEATTELRLEQNDITELPPKAFANY-----KRLRRIDLSKNQISKVAVDAF-QGLKSLTSLTLNNNNLTYLPDGVFA--- 193 (405)
Q Consensus 123 ~~~L~~L~L~~n~i~~l~~~~~~~l-----~~L~~L~ls~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~l~~~~f~--- 193 (405)
.+.++.|++++|.++......+..+ .+|++|++++|.++......+ ..+.+|+.|++++|.++......+.
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 3578888888888876554443322 678888888888765432222 2345778888888888766554442
Q ss_pred --cccCCcEEEeecCccc
Q psy12210 194 --ELFRLRTLRISENSFI 209 (405)
Q Consensus 194 --~l~~L~~L~l~~N~l~ 209 (405)
..++|+.|++++|.+.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~ 168 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLT 168 (372)
T ss_dssp HSTTCCCCEEECCSSCCH
T ss_pred HhcCCccceeeCCCCCCC
Confidence 3467888888887754
No 154
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=98.33 E-value=5.2e-07 Score=70.93 Aligned_cols=64 Identities=31% Similarity=0.648 Sum_probs=59.8
Q ss_pred CCCCCccccCceeecCCCCCC--cCCCCCCCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCc
Q psy12210 294 SCPHPCRCADGIVDCREKGLN--KVPILLPEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDIT 365 (405)
Q Consensus 294 ~~~~~~~~~l~~l~l~~n~l~--~~p~~~~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~ 365 (405)
.||..|.|.-..+++++++++ .+|..+++++++|+|+ |+|+.++ .+.|..+++ +.|+|++|.+.
T Consensus 1 ~CP~~C~C~~~~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~--------~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 1 PCPAPCSCAGTLVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALP--------PGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp CCCTTCEEETTEEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCC--------TTTGGGCTTCCEEECCSSCCB
T ss_pred CcCCCCEEcCCEEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccC--------hhhhhhccccCEEEecCCCee
Confidence 389999999999999999999 9999999999999999 9999999 888999999 99999999775
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.09 E-value=2.3e-06 Score=71.78 Aligned_cols=86 Identities=14% Similarity=0.110 Sum_probs=62.8
Q ss_pred CCccEEEccCCCCCCCCcc----cccCCCCCcEEecCCCcceeec----ccccCCCCCCCEEEc--cCCcCcccCh----
Q psy12210 124 EATTELRLEQNDITELPPK----AFANYKRLRRIDLSKNQISKVA----VDAFQGLKSLTSLTL--NNNNLTYLPD---- 189 (405)
Q Consensus 124 ~~L~~L~L~~n~i~~l~~~----~~~~l~~L~~L~ls~n~l~~~~----~~~~~~l~~L~~L~l--~~n~l~~l~~---- 189 (405)
+++++|+|++|.|...... .+...+.|++|++++|.+.... ...+...++|++|++ ++|.++....
T Consensus 65 ~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~ 144 (185)
T 1io0_A 65 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIA 144 (185)
T ss_dssp CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHH
T ss_pred CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHH
Confidence 3678888888888753322 2445578999999999887642 355677788999999 8898886543
Q ss_pred hhhhcccCCcEEEeecCccc
Q psy12210 190 GVFAELFRLRTLRISENSFI 209 (405)
Q Consensus 190 ~~f~~l~~L~~L~l~~N~l~ 209 (405)
..+...++|+.|++++|.+.
T Consensus 145 ~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 145 NMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHCSSCCEEECCCSSHH
T ss_pred HHHHhCCCcCEEeccCCCCC
Confidence 23445588999999999865
No 156
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.91 E-value=2.6e-05 Score=72.48 Aligned_cols=79 Identities=14% Similarity=0.067 Sum_probs=48.1
Q ss_pred CCccEEEccCCCCCC-----C----CcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcccChhhhh-
Q psy12210 124 EATTELRLEQNDITE-----L----PPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFA- 193 (405)
Q Consensus 124 ~~L~~L~L~~n~i~~-----l----~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~- 193 (405)
++|+.|.+....... + ....+..+++|++|.++++.-..+++ +. .++|+.|++..+.+..-....+.
T Consensus 139 ~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~--~~-~~~L~~L~L~~~~l~~~~l~~l~~ 215 (362)
T 2ra8_A 139 AHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK--KP-RPNLKSLEIISGGLPDSVVEDILG 215 (362)
T ss_dssp TTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS--CB-CTTCSEEEEECSBCCHHHHHHHHH
T ss_pred chhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc--cc-CCCCcEEEEecCCCChHHHHHHHH
Confidence 478888876543321 1 11234667888888888773222322 33 67888888887776543333333
Q ss_pred -cccCCcEEEeec
Q psy12210 194 -ELFRLRTLRISE 205 (405)
Q Consensus 194 -~l~~L~~L~l~~ 205 (405)
.+++|+.|+++.
T Consensus 216 ~~lp~L~~L~L~~ 228 (362)
T 2ra8_A 216 SDLPNLEKLVLYV 228 (362)
T ss_dssp SBCTTCCEEEEEC
T ss_pred ccCCCCcEEEEec
Confidence 578888888754
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.82 E-value=1.3e-05 Score=70.93 Aligned_cols=60 Identities=27% Similarity=0.395 Sum_probs=28.8
Q ss_pred CccEEEccCCCCCCCCc--ccccCCCCCcEEecCCCcceeec-ccccCCCCCCCEEEccCCcCc
Q psy12210 125 ATTELRLEQNDITELPP--KAFANYKRLRRIDLSKNQISKVA-VDAFQGLKSLTSLTLNNNNLT 185 (405)
Q Consensus 125 ~L~~L~L~~n~i~~l~~--~~~~~l~~L~~L~ls~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~ 185 (405)
.|+.|+|++|.|+.++. ..+..+++|+.|+|++|.+.++. -..+.++ +|++|++++|.+.
T Consensus 171 ~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 171 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLC 233 (267)
T ss_dssp TCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTG
T ss_pred CCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCc
Confidence 45555555555555442 22344555555555555555441 1122222 5555555555554
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.78 E-value=1.6e-05 Score=65.39 Aligned_cols=84 Identities=14% Similarity=0.141 Sum_probs=70.0
Q ss_pred CCccEEEccCCCCCCCCcccccCCCCCcEEecCCCc-ceeecccccCCC----CCCCEEEccCCc-CcccChhhhhcccC
Q psy12210 124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQ-ISKVAVDAFQGL----KSLTSLTLNNNN-LTYLPDGVFAELFR 197 (405)
Q Consensus 124 ~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~-l~~~~~~~~~~l----~~L~~L~l~~n~-l~~l~~~~f~~l~~ 197 (405)
..|+.|+++++.|+...-..+.++++|+.|+|++|. ++...-..+..+ ++|++|++++|. +++-.-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 479999999999998777778999999999999995 766444445543 479999999986 98777677888999
Q ss_pred CcEEEeecCc
Q psy12210 198 LRTLRISENS 207 (405)
Q Consensus 198 L~~L~l~~N~ 207 (405)
|+.|++++++
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 9999999976
No 159
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.61 E-value=1.9e-05 Score=66.09 Aligned_cols=82 Identities=11% Similarity=0.064 Sum_probs=57.3
Q ss_pred ceEEcCCCCccccC-----CCC--CCCccEEEccCCCCCCCCc----ccccCCCCCcEEec--CCCcceeec----cccc
Q psy12210 106 GIVDCREKGLNKVP-----ILL--PEATTELRLEQNDITELPP----KAFANYKRLRRIDL--SKNQISKVA----VDAF 168 (405)
Q Consensus 106 ~~l~~~~n~l~~lp-----~~~--~~~L~~L~L~~n~i~~l~~----~~~~~l~~L~~L~l--s~n~l~~~~----~~~~ 168 (405)
+.+++++|.++.-. ..+ .+.++.|+|++|.|..... ..+...+.|++|++ ++|.+.... ...+
T Consensus 68 ~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L 147 (185)
T 1io0_A 68 KKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANML 147 (185)
T ss_dssp CEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHH
T ss_pred CEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHH
Confidence 45556666554311 111 2579999999999987432 34667789999999 889988643 2445
Q ss_pred CCCCCCCEEEccCCcCccc
Q psy12210 169 QGLKSLTSLTLNNNNLTYL 187 (405)
Q Consensus 169 ~~l~~L~~L~l~~n~l~~l 187 (405)
...++|++|++++|.+..-
T Consensus 148 ~~n~~L~~L~L~~n~i~~~ 166 (185)
T 1io0_A 148 EKNTTLLKFGYHFTQQGPR 166 (185)
T ss_dssp HHCSSCCEEECCCSSHHHH
T ss_pred HhCCCcCEEeccCCCCChH
Confidence 5678999999999988643
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.37 E-value=0.00015 Score=64.00 Aligned_cols=79 Identities=20% Similarity=0.258 Sum_probs=59.3
Q ss_pred EEccCCCCCCCCc---ccccCCCCCcEEecCCCcceeecc--cccCCCCCCCEEEccCCcCcccChhhhhccc--CCcEE
Q psy12210 129 LRLEQNDITELPP---KAFANYKRLRRIDLSKNQISKVAV--DAFQGLKSLTSLTLNNNNLTYLPDGVFAELF--RLRTL 201 (405)
Q Consensus 129 L~L~~n~i~~l~~---~~~~~l~~L~~L~ls~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~--~L~~L 201 (405)
++++.|....++. ....++++|+.|+|++|.++.+.+ ..+..+++|+.|++++|+++++.. +..+. +|+.|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~--l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE--LDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGG--GGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchh--hhhcccCCcceE
Confidence 4555564433332 122568899999999999998753 456689999999999999998832 45555 99999
Q ss_pred EeecCccc
Q psy12210 202 RISENSFI 209 (405)
Q Consensus 202 ~l~~N~l~ 209 (405)
++.+|++.
T Consensus 226 ~L~~Npl~ 233 (267)
T 3rw6_A 226 WLDGNSLC 233 (267)
T ss_dssp ECTTSTTG
T ss_pred EccCCcCc
Confidence 99999975
No 161
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=96.77 E-value=0.0017 Score=60.30 Aligned_cols=85 Identities=14% Similarity=0.176 Sum_probs=44.1
Q ss_pred CCccEEEccCCCCCCCCccccc--CCCCCcEEecCC--Cc------ceeeccccc--CCCCCCCEEEccCCcCcccChhh
Q psy12210 124 EATTELRLEQNDITELPPKAFA--NYKRLRRIDLSK--NQ------ISKVAVDAF--QGLKSLTSLTLNNNNLTYLPDGV 191 (405)
Q Consensus 124 ~~L~~L~L~~n~i~~l~~~~~~--~l~~L~~L~ls~--n~------l~~~~~~~~--~~l~~L~~L~l~~n~l~~l~~~~ 191 (405)
++|+.|++..+.+..-....+. .+++|+.|+|+. +. +..+.+ .+ ..+++|+.|++.+|.+.......
T Consensus 193 ~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~-~l~~~~~p~Lr~L~L~~~~i~~~~~~~ 271 (362)
T 2ra8_A 193 PNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP-LFSKDRFPNLKWLGIVDAEEQNVVVEM 271 (362)
T ss_dssp TTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG-GSCTTTCTTCCEEEEESCTTHHHHHHH
T ss_pred CCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH-HHhcCCCCCcCEEeCCCCCCchHHHHH
Confidence 4677777776665432222232 566777776642 11 111111 12 23567777777777665322222
Q ss_pred hh---cccCCcEEEeecCccc
Q psy12210 192 FA---ELFRLRTLRISENSFI 209 (405)
Q Consensus 192 f~---~l~~L~~L~l~~N~l~ 209 (405)
+. .+++|+.|+++.|.+.
T Consensus 272 la~a~~~~~L~~LdLs~n~L~ 292 (362)
T 2ra8_A 272 FLESDILPQLETMDISAGVLT 292 (362)
T ss_dssp HHHCSSGGGCSEEECCSSCCB
T ss_pred HHhCccCCCCCEEECCCCCCC
Confidence 22 3567777777766543
No 162
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.55 E-value=0.00063 Score=55.84 Aligned_cols=82 Identities=9% Similarity=0.086 Sum_probs=60.8
Q ss_pred cCceeecCCCCCCcCCC---CCCCCceEEEEE-e-cceeeeccchhccccccccCC----cc-ceEEecCC-CCcccCcc
Q psy12210 302 ADGIVDCREKGLNKVPI---LLPEATTELTYM-V-SIDRVDKVLLYSYISNNFKRW----TN-RSRRLEQN-DITELPPK 370 (405)
Q Consensus 302 ~l~~l~l~~n~l~~~p~---~~~~~l~~L~l~-n-~i~~i~~~~~~~~~~~~~~~l----~~-~~L~L~~N-~i~~i~~~ 370 (405)
.++.||++++.++..-. .-.+.|++|+|+ + .|++-. -..++.+ ++ +.|+|+++ +|+.-...
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~g--------L~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~ 133 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGC--------LERLSQLENLQKSMLEMEIISCGNVTDKGII 133 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHH--------HHHHHTCHHHHHHCCEEEEESCTTCCHHHHH
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHH--------HHHHHhcccccCCCCEEEcCCCCcCCHHHHH
Confidence 69999999998775321 224789999999 5 466543 2344443 46 99999998 69987777
Q ss_pred cccCCccCceeecccCC-Cccc
Q psy12210 371 AFANYKRLRRIRLEQND-ITEL 391 (405)
Q Consensus 371 ~~~~l~~L~~L~L~~N~-l~~i 391 (405)
.+..+++|+.|+|+++. ++..
T Consensus 134 ~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 134 ALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp HGGGCTTCCEEEEESCTTCCCH
T ss_pred HHhcCCCCCEEECCCCCCCCch
Confidence 78889999999999986 6653
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.83 E-value=0.02 Score=47.81 Aligned_cols=86 Identities=15% Similarity=0.172 Sum_probs=56.8
Q ss_pred CCccEEEccCCCCCCCCcccc----cCCCCCcEEecCCCcceeecc----cccCCCCCCCEEEccCCcCcccCh------
Q psy12210 124 EATTELRLEQNDITELPPKAF----ANYKRLRRIDLSKNQISKVAV----DAFQGLKSLTSLTLNNNNLTYLPD------ 189 (405)
Q Consensus 124 ~~L~~L~L~~n~i~~l~~~~~----~~l~~L~~L~ls~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~l~~------ 189 (405)
..|+.|+|++|.|.+.....+ ..-+.|+.|+|++|.|..... +++..-+.|++|++++|....+..
T Consensus 70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~i 149 (197)
T 1pgv_A 70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDM 149 (197)
T ss_dssp SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHH
T ss_pred CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHH
Confidence 367888888888875443333 344678888888888875332 356666779999998653322221
Q ss_pred -hhhhcccCCcEEEeecCccc
Q psy12210 190 -GVFAELFRLRTLRISENSFI 209 (405)
Q Consensus 190 -~~f~~l~~L~~L~l~~N~l~ 209 (405)
.++..-+.|+.|+++.|...
T Consensus 150 a~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 150 MMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHhCCCcCeEeccCCCcc
Confidence 33455578999999877543
No 164
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=93.17 E-value=0.2 Score=36.62 Aligned_cols=51 Identities=20% Similarity=0.311 Sum_probs=39.3
Q ss_pred CCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcC
Q psy12210 133 QNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNL 184 (405)
Q Consensus 133 ~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l 184 (405)
+..++.|...+|.++.+|+.+.|.. .++.|...+|.+|.+|+.+.+.....
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~~~~P 55 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQP-NIGLLYDGMFSGCTALEKLILTGEDP 55 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEECCSCG
T ss_pred CCccCEecHHHhcCCCCCcEEEcCC-chheEcHHHHhccCCccEEEEcCCCC
Confidence 5567788888888888888888875 46677778888888888888866543
No 165
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.34 E-value=0.067 Score=44.58 Aligned_cols=83 Identities=16% Similarity=0.149 Sum_probs=59.7
Q ss_pred CCccEEEccCC-CCCCCCc----ccccCCCCCcEEecCCCcceeecc----cccCCCCCCCEEEccCCcCcccChhh---
Q psy12210 124 EATTELRLEQN-DITELPP----KAFANYKRLRRIDLSKNQISKVAV----DAFQGLKSLTSLTLNNNNLTYLPDGV--- 191 (405)
Q Consensus 124 ~~L~~L~L~~n-~i~~l~~----~~~~~l~~L~~L~ls~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~l~~~~--- 191 (405)
+.|+.|+|+++ .|..... ..+..-..|+.|+|++|.+..... +.+..-+.|+.|++++|.|+.-...+
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 47899999885 7764322 235566789999999999986443 33445678999999999998655433
Q ss_pred -hhcccCCcEEEeecC
Q psy12210 192 -FAELFRLRTLRISEN 206 (405)
Q Consensus 192 -f~~l~~L~~L~l~~N 206 (405)
+..-+.|+.|++++|
T Consensus 121 aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 121 STLVTQSIVEFKADNQ 136 (197)
T ss_dssp HTTTTCCCSEEECCCC
T ss_pred HHhhCCceeEEECCCC
Confidence 334467999999865
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=90.62 E-value=0.21 Score=36.52 Aligned_cols=41 Identities=22% Similarity=0.246 Sum_probs=36.6
Q ss_pred cccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCC
Q psy12210 346 SNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQND 387 (405)
Q Consensus 346 ~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~ 387 (405)
...|.++.+ +.+.+.. .++.|...+|.+|.+|+.+.+.+..
T Consensus 13 ~~aF~~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~~~~ 54 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQP-NIGLLYDGMFSGCTALEKLILTGED 54 (100)
T ss_dssp SCTTTTCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEECCSC
T ss_pred HHHhcCCCCCcEEEcCC-chheEcHHHHhccCCccEEEEcCCC
Confidence 788999999 9999986 5999999999999999999998754
Done!