RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12210
(405 letters)
>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat.
Length = 60
Score = 61.4 bits (150), Expect = 2e-12
Identities = 24/58 (41%), Positives = 34/58 (58%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNL 184
L L N +T +P AF L+ +DLS N ++ ++ +AF GL SL SL L+ NNL
Sbjct: 3 KSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 58.7 bits (143), Expect = 2e-11
Identities = 23/60 (38%), Positives = 37/60 (61%)
Query: 149 RLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSF 208
L+ +DLS N+++ + AF+GL +L L L+ NNLT + F+ L LR+L +S N+
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 39.4 bits (93), Expect = 1e-04
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLR 403
L N +T +P AF L+ + L N++T + P+AF+ LR
Sbjct: 7 LSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLR 51
Score = 31.7 bits (73), Expect = 0.062
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENS 33
L+NN LT +PDG F L L+ L +S N+
Sbjct: 7 LSNNRLTVIPDGAFKGLPNLKVLDLSGNN 35
Score = 29.4 bits (67), Expect = 0.44
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSF 34
L+ NNLT + F+ L LR+L +S N+
Sbjct: 31 LSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 29.0 bits (66), Expect = 0.51
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDI 388
L N++T + P+AF+ LR + L N++
Sbjct: 31 LSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 27.5 bits (62), Expect = 2.1
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 377 RLRRIRLEQNDITELPPKAFANYKRLR 403
L+ + L N +T +P AF L+
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLK 27
>gnl|CDD|188093 TIGR00864, PCC, polycystin cation channel protein. The
Polycystin Cation Channel (PCC) Family (TC 1.A.5)
Polycystin is a huge protein of 4303aas. Its repeated
leucine-rich (LRR) segment is found in many proteins.
It contains 16 polycystic kidney disease (PKD) domains,
one LDL-receptor class A domain, one C-type lectin
family domain, and 16-18 putative TMSs in positions
between residues 2200 and 4100. Polycystin-L has been
shown to be a cation (Na+, K+ and Ca2+) channel that is
activated by Ca2+. Two members of the PCC family
(polycystin 1 and 2) are mutated in autosomal dominant
polycystic kidney disease, and polycystin-L is deleted
in mice with renal and retinal defects. Note: this
model is restricted to the amino half for technical
reasons.
Length = 2740
Score = 55.1 bits (132), Expect = 4e-08
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 9/82 (10%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLK------RYPRLGLYTK 58
++NN ++ + +G+ A L L + +S N F CDC L+ L RW + R P
Sbjct: 2 ISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEEKGVKVRQPEA---AL 58
Query: 59 CFAPSHIKGQNILDIPEHEFKC 80
C P + GQ +L IP + C
Sbjct: 59 CAGPGALAGQPLLGIPLLDSGC 80
Score = 55.1 bits (132), Expect = 4e-08
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 9/82 (10%)
Query: 179 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLK------RYPRLGLYTK 232
++NN ++ + +G+ A L L + +S N F CDC L+ L RW + R P
Sbjct: 2 ISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEEKGVKVRQPEA---AL 58
Query: 233 CFAPSHIKGQNILDIPEHEFKC 254
C P + GQ +L IP + C
Sbjct: 59 CAGPGALAGQPLLGIPLLDSGC 80
>gnl|CDD|214507 smart00082, LRRCT, Leucine rich repeat C-terminal domain.
Length = 51
Score = 47.0 bits (112), Expect = 2e-07
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 32 NSFICDCHLSWLHRWLKRYPRL--GLYTKCFAPSHIKGQNILDIPEHEFKCS 81
N FICDC L WL RWL+ L + +C +PS ++G +L++ EFKC
Sbjct: 1 NPFICDCELRWLLRWLQANEHLQDPVDLRCASPSSLRGP-LLELLHSEFKCP 51
Score = 47.0 bits (112), Expect = 2e-07
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 206 NSFICDCHLSWLHRWLKRYPRL--GLYTKCFAPSHIKGQNILDIPEHEFKCS 255
N FICDC L WL RWL+ L + +C +PS ++G +L++ EFKC
Sbjct: 1 NPFICDCELRWLLRWLQANEHLQDPVDLRCASPSSLRGP-LLELLHSEFKCP 51
>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein
kinase; Provisional.
Length = 968
Score = 49.5 bits (118), Expect = 3e-06
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 129 LRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLT-YL 187
L L +N + P+ + L ++ LS+N++S D K L SL L++N L+ +
Sbjct: 480 LDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQI 539
Query: 188 PDGVFAELFRLRTLRISEN 206
P F+E+ L L +S+N
Sbjct: 540 PAS-FSEMPVLSQLDLSQN 557
Score = 39.8 bits (93), Expect = 0.002
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 146 NYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY-LPDGVFAELFRLRTLRIS 204
N R+ IDLS IS A L + ++ L+NN L+ +PD +F LR L +S
Sbjct: 67 NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS 126
Query: 205 ENSF 208
N+F
Sbjct: 127 NNNF 130
Score = 37.5 bits (87), Expect = 0.014
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 150 LRRIDLSKNQIS-KVAVDAFQGLKSLTSLTLNNNNLT-YLPDGVFAELFRLRTLRISENS 207
++ I+LS NQ+S + D F SL L L+NNN T +P G + L TL +S N
Sbjct: 95 IQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRG---SIPNLETLDLSNNM 151
Query: 208 F 208
Sbjct: 152 L 152
Score = 35.6 bits (82), Expect = 0.047
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 129 LRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLT-YL 187
L L QN ++ P + + ++L +DLS N +S + L++L L L +NN T +
Sbjct: 265 LFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKI 324
Query: 188 PDGVFAELFRLRTLRISENSF 208
P + L RL+ L++ N F
Sbjct: 325 PVAL-TSLPRLQVLQLWSNKF 344
Score = 34.4 bits (79), Expect = 0.10
Identities = 22/82 (26%), Positives = 36/82 (43%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
+L L N + PK+ + LRR+ L N S F L + L ++NNNL
Sbjct: 383 FKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQG 442
Query: 187 LPDGVFAELFRLRTLRISENSF 208
+ ++ L+ L ++ N F
Sbjct: 443 RINSRKWDMPSLQMLSLARNKF 464
Score = 34.4 bits (79), Expect = 0.11
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 122 LPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNN 181
L E +L+L +N ++ P ++ K+L +DLS NQ+S +F + L+ L L+
Sbjct: 498 LSE-LMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQ 556
Query: 182 NNLT 185
N L+
Sbjct: 557 NQLS 560
Score = 32.9 bits (75), Expect = 0.31
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 129 LRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLT-YL 187
L L +N P +F + KRL +DLS+NQ S L L L L+ N L+ +
Sbjct: 457 LSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEI 515
Query: 188 PDGVFAELFRLRTLRISENSF 208
PD + + +L +L +S N
Sbjct: 516 PDEL-SSCKKLVSLDLSHNQL 535
Score = 29.0 bits (65), Expect = 4.9
Identities = 23/80 (28%), Positives = 41/80 (51%)
Query: 129 LRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLP 188
L L N++T P + N K L+ + L +N++S + L+ L SL L++N+L+
Sbjct: 241 LDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI 300
Query: 189 DGVFAELFRLRTLRISENSF 208
+ +L L L + N+F
Sbjct: 301 PELVIQLQNLEILHLFSNNF 320
Score = 28.7 bits (64), Expect = 7.7
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 129 LRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLT-YL 187
L L N+ T P A + RL+ + L N+ S +LT L L+ NNLT +
Sbjct: 313 LHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEI 372
Query: 188 PDGV--FAELFRL 198
P+G+ LF+L
Sbjct: 373 PEGLCSSGNLFKL 385
>gnl|CDD|214470 smart00013, LRRNT, Leucine rich repeat N-terminal domain.
Length = 33
Score = 41.9 bits (99), Expect = 9e-06
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 97 CPHPCRCADGIVDCREKGLNKVPILLPEATTE 128
CP PC C+ VDC +GL +VP+ LP TT
Sbjct: 2 CPAPCNCSGTAVDCSGRGLTEVPLDLPPDTTL 33
Score = 41.9 bits (99), Expect = 9e-06
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 295 CPHPCRCADGIVDCREKGLNKVPILLPEATTE 326
CP PC C+ VDC +GL +VP+ LP TT
Sbjct: 2 CPAPCNCSGTAVDCSGRGLTEVPLDLPPDTTL 33
>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function
unknown].
Length = 394
Score = 45.3 bits (107), Expect = 3e-05
Identities = 30/95 (31%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
Query: 115 LNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSL 174
+ + LL EL L N I LP N L+ +DLS N +S + L +L
Sbjct: 131 IPPLIGLLKSNLKELDLSDNKIESLPS-PLRNLPNLKNLDLSFNDLSDLP-KLLSNLSNL 188
Query: 175 TSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFI 209
+L L+ N ++ LP L L L +S NS I
Sbjct: 189 NNLDLSGNKISDLPP-EIELLSALEELDLSNNSII 222
Score = 42.6 bits (100), Expect = 3e-04
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 120 ILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTL 179
+ L L N I++LPP+ L +DLS N I ++ + + LK+L+ L L
Sbjct: 182 LSNLSNLNNLDLSGNKISDLPPEI-ELLSALEELDLSNNSIIEL-LSSLSNLKNLSGLEL 239
Query: 180 NNNNLTYLPDGVFAELFRLRTLRISEN 206
+NN L LP+ + L L TL +S N
Sbjct: 240 SNNKLEDLPESI-GNLSNLETLDLSNN 265
Score = 42.3 bits (99), Expect = 3e-04
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
T L L+ N+IT++PP L+ +DLS N+I + + L +L +L L+ N+L+
Sbjct: 119 TSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPL-RNLPNLKNLDLSFNDLSD 177
Query: 187 LPDGVFAELFRLRTLRISEN 206
LP + + L L L +S N
Sbjct: 178 LPK-LLSNLSNLNNLDLSGN 196
Score = 30.7 bits (69), Expect = 1.6
Identities = 19/78 (24%), Positives = 27/78 (34%), Gaps = 5/78 (6%)
Query: 111 REKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQG 170
+ + L + L L L N I+ + + LR +DLS N +S
Sbjct: 243 KLEDLPESIGNLSN-LETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSN--ALPLIA 297
Query: 171 LKSLTSLTLNNNNLTYLP 188
L L L N LT
Sbjct: 298 LLLLLLELLLNLLLTLKA 315
>gnl|CDD|205486 pfam13306, LRR_5, Leucine rich repeats (6 copies). This family
includes a number of leucine rich repeats. This family
contains a large number of BSPA-like surface antigens
from Trichomonas vaginalis.
Length = 128
Score = 42.5 bits (101), Expect = 4e-05
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 134 NDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFA 193
+ +T + AF+ L+ I L + ++ + AF SLTS+T+ ++ LT + + F+
Sbjct: 20 SSVTSIGEYAFSGCTSLKSITLPSS-LTSIGSYAFYNCSSLTSITIPSS-LTSIGEYAFS 77
Query: 194 ELFRLRTLRISEN 206
L ++ I N
Sbjct: 78 NCSSLTSITIPSN 90
Score = 39.4 bits (93), Expect = 5e-04
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 137 TELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELF 196
T + AF N L I + + ++ + AF G SL S+TL ++LT + F
Sbjct: 1 TSIGDYAFYNCS-LTSITIPSS-VTSIGEYAFSGCTSLKSITL-PSSLTSIGSYAFYNCS 57
Query: 197 RLRTLRISEN 206
L ++ I +
Sbjct: 58 SLTSITIPSS 67
Score = 34.0 bits (79), Expect = 0.031
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 134 NDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFA 193
+ +T + AF+N L I + N ++ + AF SL S+T+ +++T + D F+
Sbjct: 66 SSLTSIGEYAFSNCSSLTSITIPSN-LTTIGSYAFSN-CSLKSITI-PSSVTTIGDYAFS 122
Score = 27.1 bits (61), Expect = 10.0
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 362 NDITELPPKAFANYKRLRRIRLEQNDITELPPKAFAN 398
+ +T + AF+N L I + N +T + AF+N
Sbjct: 66 SSLTSIGEYAFSNCSSLTSITIPSN-LTTIGSYAFSN 101
>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies). Leucine rich
repeats are short sequence motifs present in a number of
proteins with diverse functions and cellular locations.
These repeats are usually involved in protein-protein
interactions. Each Leucine Rich Repeat is composed of a
beta-alpha unit. These units form elongated non-globular
structures. Leucine Rich Repeats are often flanked by
cysteine rich domains.
Length = 43
Score = 40.2 bits (95), Expect = 4e-05
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 148 KRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLP 188
L +DLS NQI+ + L +L +L L+ N +T L
Sbjct: 1 TNLETLDLSNNQITDL--PPLSNLPNLETLDLSGNKITDLS 39
Score = 35.9 bits (84), Expect = 0.001
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKV 163
L L N IT+LPP +N L +DLS N+I+ +
Sbjct: 4 ETLDLSNNQITDLPP--LSNLPNLETLDLSGNKITDL 38
Score = 31.3 bits (72), Expect = 0.058
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPP 393
L N IT+LPP +N L + L N IT+L P
Sbjct: 7 DLSNNQITDLPP--LSNLPNLETLDLSGNKITDLSP 40
>gnl|CDD|201808 pfam01462, LRRNT, Leucine rich repeat N-terminal domain. Leucine
Rich Repeats pfam00560 are short sequence motifs present
in a number of proteins with diverse functions and
cellular locations. Leucine Rich Repeats are often
flanked by cysteine rich domains. This domain is often
found at the N-terminus of tandem leucine rich repeats.
Length = 28
Score = 39.5 bits (93), Expect = 5e-05
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 97 CPHPCRCADGIVDCREKGLNKVPILLP 123
CP PC C+ +VDC +GL +VP LP
Sbjct: 2 CPAPCVCSGTVVDCSGRGLTEVPRDLP 28
Score = 39.5 bits (93), Expect = 5e-05
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 295 CPHPCRCADGIVDCREKGLNKVPILLP 321
CP PC C+ +VDC +GL +VP LP
Sbjct: 2 CPAPCVCSGTVVDCSGRGLTEVPRDLP 28
>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional.
Length = 754
Score = 42.4 bits (99), Expect = 4e-04
Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 30/121 (24%)
Query: 111 REKGLNKVPILLPEATTELRLEQNDITELP---PKAFANYKRLRRIDLSKNQISKVAVDA 167
L +P LP+ E+ L N ITELP P A L+ +DL N+IS + +
Sbjct: 228 NSNQLTSIPATLPDTIQEMELSINRITELPERLPSA------LQSLDLFHNKISCLPENL 281
Query: 168 FQGLKSL------------------TSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFI 209
+ L+ L T L + +N+LT LP+ + L+TL EN+
Sbjct: 282 PEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETL---PPGLKTLEAGENALT 338
Query: 210 C 210
Sbjct: 339 S 339
Score = 38.1 bits (88), Expect = 0.007
Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 26/113 (23%)
Query: 114 GLNKVPILLPEATTELRLEQNDITELPPKAFANYKRL------------------RRIDL 155
GL +P +PE T L L+ N++ LP N K L + ++L
Sbjct: 189 GLTTIPACIPEQITTLILDNNELKSLPENLQGNIKTLYANSNQLTSIPATLPDTIQEMEL 248
Query: 156 SKNQISKVAVDAFQGLKS-LTSLTLNNNNLTYLPDGVFAELFRLRTLRISENS 207
S N+I+++ + L S L SL L +N ++ LP+ + E LR L + +NS
Sbjct: 249 SINRITELP----ERLPSALQSLDLFHNKISCLPENLPEE---LRYLSVYDNS 294
Score = 30.8 bits (69), Expect = 1.5
Identities = 42/209 (20%), Positives = 72/209 (34%), Gaps = 42/209 (20%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSH 64
L+NN L LP+ + + +TL + N L P
Sbjct: 206 LDNNELKSLPENLQGNI---KTLYANSNQ-------------LTSIPAT--LPDTIQEME 247
Query: 65 IKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPE 124
+ I ++PE ++ P + + + +P LP
Sbjct: 248 LSINRITELPER---LPSALQSLDLFHNKISCLPENLPEELRYLSVYDNSIRTLPAHLPS 304
Query: 125 ATTELRLEQNDITELPPKAFANYK------------------RLRRIDLSKNQISKVAVD 166
T L ++ N +T LP K L+ +D+SKNQI+ V +
Sbjct: 305 GITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPASLPPELQVLDVSKNQIT-VLPE 363
Query: 167 AFQGLKSLTSLTLNNNNLTYLPDGVFAEL 195
++T+L ++ N LT LP+ + A L
Sbjct: 364 TLP--PTITTLDVSRNALTNLPENLPAAL 390
>gnl|CDD|197688 smart00370, LRR, Leucine-rich repeats, outliers.
Length = 24
Score = 36.6 bits (86), Expect = 5e-04
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 171 LKSLTSLTLNNNNLTYLPDGVFA 193
L +L L L+NN L+ LP G F
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAFQ 23
Score = 27.7 bits (63), Expect = 0.81
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 127 TELRLEQNDITELPPKAFAN 146
EL L N ++ LPP AF
Sbjct: 5 RELDLSNNQLSSLPPGAFQG 24
Score = 27.3 bits (62), Expect = 0.99
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 378 LRRIRLEQNDITELPPKAFAN 398
LR + L N ++ LPP AF
Sbjct: 4 LRELDLSNNQLSSLPPGAFQG 24
Score = 27.3 bits (62), Expect = 1.2
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 5 LNNNNLTYLPDGVFA 19
L+NN L+ LP G F
Sbjct: 9 LSNNQLSSLPPGAFQ 23
Score = 26.2 bits (59), Expect = 3.2
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 150 LRRIDLSKNQISKVAVDAFQG 170
LR +DLS NQ+S + AFQG
Sbjct: 4 LRELDLSNNQLSSLPPGAFQG 24
>gnl|CDD|197687 smart00369, LRR_TYP, Leucine-rich repeats, typical (most populated)
subfamily.
Length = 24
Score = 36.6 bits (86), Expect = 5e-04
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 171 LKSLTSLTLNNNNLTYLPDGVFA 193
L +L L L+NN L+ LP G F
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAFQ 23
Score = 27.7 bits (63), Expect = 0.81
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 127 TELRLEQNDITELPPKAFAN 146
EL L N ++ LPP AF
Sbjct: 5 RELDLSNNQLSSLPPGAFQG 24
Score = 27.3 bits (62), Expect = 0.99
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 378 LRRIRLEQNDITELPPKAFAN 398
LR + L N ++ LPP AF
Sbjct: 4 LRELDLSNNQLSSLPPGAFQG 24
Score = 27.3 bits (62), Expect = 1.2
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 5 LNNNNLTYLPDGVFA 19
L+NN L+ LP G F
Sbjct: 9 LSNNQLSSLPPGAFQ 23
Score = 26.2 bits (59), Expect = 3.2
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 150 LRRIDLSKNQISKVAVDAFQG 170
LR +DLS NQ+S + AFQG
Sbjct: 4 LRELDLSNNQLSSLPPGAFQG 24
>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease
inhibitor (RI)-like subfamily. LRRs are 20-29 residue
sequence motifs present in many proteins that
participate in protein-protein interactions and have
different functions and cellular locations. LRRs
correspond to structural units consisting of a beta
strand (LxxLxLxxN/CxL conserved pattern) and an alpha
helix. This alignment contains 12 strands corresponding
to 11 full repeats, consistent with the extent observed
in the subfamily acting as Ran GTPase Activating
Proteins (RanGAP1).
Length = 319
Score = 40.8 bits (96), Expect = 8e-04
Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 13/97 (13%)
Query: 128 ELRLEQNDITE----LPPKAFANYKRLRRIDLSKNQI----SKVAVDAFQGLKSLTSLTL 179
EL L N I + + L +DL+ N + + + LKSL L L
Sbjct: 169 ELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNL 228
Query: 180 NNNNLT-----YLPDGVFAELFRLRTLRISENSFICD 211
+NNLT L + + L TL +S N D
Sbjct: 229 GDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDD 265
Score = 30.8 bits (70), Expect = 1.1
Identities = 23/96 (23%), Positives = 35/96 (36%), Gaps = 14/96 (14%)
Query: 127 TELRLEQNDITELPPKAFAN-----YKRLRRIDLSKNQISKVAVDAF-QGLK---SLTSL 177
L L N++T+ A A+ L + LS N I+ + L SL L
Sbjct: 224 EVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLEL 283
Query: 178 TLNNNNLTYLPDGVFAELF-----RLRTLRISENSF 208
L N + AE L +L + ++SF
Sbjct: 284 DLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319
>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional.
Length = 788
Score = 40.1 bits (93), Expect = 0.002
Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 8/108 (7%)
Query: 81 SGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELP 140
+ P E+ G A + +++ E GL +P LP T L + N++T LP
Sbjct: 179 AAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLP 238
Query: 141 PKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLP 188
A LR +++S NQ++ + V L L++ +N LT+LP
Sbjct: 239 ----ALPPELRTLEVSGNQLTSLPVLP----PGLLELSIFSNPLTHLP 278
>gnl|CDD|185086 PRK15132, PRK15132, tyrosine transporter TyrP; Provisional.
Length = 403
Score = 33.1 bits (76), Expect = 0.25
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 341 LYSYISNNFKRWTNRSRRLEQNDITELPPKAFA 373
L+ Y+++ F+R RL+ IT LPP AFA
Sbjct: 294 LFDYLADLFQRRNTVGGRLQTGLITFLPPLAFA 326
>gnl|CDD|178001 PLN02373, PLN02373, soluble inorganic pyrophosphatase.
Length = 188
Score = 32.0 bits (73), Expect = 0.30
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 134 NDITELPPKAFANYKRLRRIDLSKNQISKVAVDAF 168
DI ELPP A +R D KN+ +VAV+ F
Sbjct: 128 TDIKELPPHRLAEIRRFFE-DYKKNENKEVAVNDF 161
>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional.
Length = 623
Score = 32.9 bits (75), Expect = 0.38
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 129 LRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLT-YL 187
+ L N I P + + L +DLS N + ++ L SL L LN N+L+ +
Sbjct: 447 INLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRV 506
Query: 188 PDGVFAELFRLRTLRISENSFIC 210
P + L + ++N+ +C
Sbjct: 507 PAALGGRLLHRASFNFTDNAGLC 529
Score = 30.2 bits (68), Expect = 2.2
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 8/74 (10%)
Query: 134 NDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFA 193
NDI++L + L+ I+LS N I + + SL L L+ N+
Sbjct: 436 NDISKL--------RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLG 487
Query: 194 ELFRLRTLRISENS 207
+L LR L ++ NS
Sbjct: 488 QLTSLRILNLNGNS 501
>gnl|CDD|227670 COG5379, BtaA, S-adenosylmethionine:diacylglycerol
3-amino-3-carboxypropyl transferase [Lipid metabolism].
Length = 414
Score = 30.6 bits (69), Expect = 1.7
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 5/69 (7%)
Query: 328 TYMVSIDRVDKVLLYSYISNNFKRWTNRSRRLEQNDITELPPKAFANY-----KRLRRIR 382
V DR++K+ + +N+ W +RR LP + LRR+
Sbjct: 251 VASVLRDRLEKLACNFPLKDNYFAWQAFARRYPYPGEGALPAYLDEGVYESIRQNLRRVA 310
Query: 383 LEQNDITEL 391
+ DI EL
Sbjct: 311 IHHADIIEL 319
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease [Transport and binding
proteins, Other].
Length = 2272
Score = 30.4 bits (68), Expect = 2.1
Identities = 14/55 (25%), Positives = 19/55 (34%), Gaps = 6/55 (10%)
Query: 48 KRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS--GPVEKPTGECAAEPSCPHP 100
++ L C P+ GQ P+ CS P P G+ EP P
Sbjct: 1292 QKRENANLRHPCSGPTEKAGQT----PQASHTCSPGQPAAHPEGQPPPEPEDPGV 1342
>gnl|CDD|222091 pfam13384, HTH_23, Homeodomain-like domain.
Length = 50
Score = 27.3 bits (61), Expect = 2.2
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 35 ICDCHLSWLHRWLKRYPRLGL 55
+ ++RWLKRY GL
Sbjct: 26 LLGVSRRTVYRWLKRYREGGL 46
Score = 27.3 bits (61), Expect = 2.2
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 209 ICDCHLSWLHRWLKRYPRLGL 229
+ ++RWLKRY GL
Sbjct: 26 LLGVSRRTVYRWLKRYREGGL 46
>gnl|CDD|223020 PHA03246, PHA03246, large tegument protein UL36; Provisional.
Length = 3095
Score = 30.3 bits (68), Expect = 2.2
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 9/86 (10%)
Query: 118 VPILLPEATTELR----LEQNDITELPPKAFANYKR--LRR-IDLSKNQISKVAVDAFQG 170
V I++P A T + L++ ITEL A+A Y LRR D K+ +V A +
Sbjct: 1608 VSIVIPSANTIMSIADALQKEKITELDGTAYAEYSAHILRRDNDAIKSITQRVTT-AIEA 1666
Query: 171 LKSLTSLTLNN-NNLTYLPDGVFAEL 195
KS L + +Y D AE
Sbjct: 1667 AKSRGESILKDLAEASYAADRETAEQ 1692
>gnl|CDD|233146 TIGR00837, araaP, aromatic amino acid transport protein. The
Hydroxy/Aromatic Amino Acid Permease (HAAAP) Family-
tyrosine/tryptophan subfamily (TC 2.A.42.1) The HAAAP
family includes well characterized aromatic amino
acid:H+ symport permeases and hydroxy amino acid
permeases. This subfamily is specific for aromatic amino
acid transporters and includes the tyrosine permease,
TyrP, of E. coli, and the tryptophan transporters TnaB
and Mtr of E. coli [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 381
Score = 29.2 bits (66), Expect = 4.4
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 341 LYSYISNNFKRWTNRSRRLEQNDITELPPKAFA 373
L+ Y+++ FK ++ R + +T LPP FA
Sbjct: 291 LFDYLADLFKFDDSKKGRFKTGLLTFLPPLVFA 323
>gnl|CDD|233759 TIGR02170, thyX, thymidylate synthase, flavin-dependent. Two forms
of microbial thymidylate synthase are known: ThyA
(2.1.1.45) and ThyX (2.1.1.148). This model describes
ThyX, a homotetrameric flavoprotein. Both enzymes
convert dUMP to dTMP. Under oxygen-limiting conditions,
thyX can complement a thyA mutation [Purines,
pyrimidines, nucleosides, and nucleotides,
2'-Deoxyribonucleotide metabolism].
Length = 209
Score = 28.5 bits (64), Expect = 5.0
Identities = 12/70 (17%), Positives = 20/70 (28%), Gaps = 10/70 (14%)
Query: 9 NLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQ 68
+ V A+L R R S S R++ + P +
Sbjct: 60 EVKGASRSVAAQLTRHRIASYSVQS----------QRYVLLRNEAPEGERVVVPPSVNDT 109
Query: 69 NILDIPEHEF 78
N+ + PE
Sbjct: 110 NLDEKPEEVV 119
Score = 28.5 bits (64), Expect = 5.0
Identities = 12/70 (17%), Positives = 20/70 (28%), Gaps = 10/70 (14%)
Query: 183 NLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQ 242
+ V A+L R R S S R++ + P +
Sbjct: 60 EVKGASRSVAAQLTRHRIASYSVQS----------QRYVLLRNEAPEGERVVVPPSVNDT 109
Query: 243 NILDIPEHEF 252
N+ + PE
Sbjct: 110 NLDEKPEEVV 119
>gnl|CDD|237793 PRK14703, PRK14703, glutaminyl-tRNA synthetase/YqeY domain fusion
protein; Provisional.
Length = 771
Score = 28.9 bits (65), Expect = 5.2
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 8/42 (19%)
Query: 109 DCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRL 150
D ++G KVP T EL +E++D +E PPK +KRL
Sbjct: 378 DVPKEGSRKVPF-----TRELYIERDDFSEDPPK---GFKRL 411
>gnl|CDD|235321 PRK04946, PRK04946, hypothetical protein; Provisional.
Length = 181
Score = 28.0 bits (63), Expect = 6.7
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 349 FKRWTNRSRRLEQNDITELPPKAFANYKRLRRIRLEQND 387
F++ +++++Q+ I PP+ K +R+ EQ D
Sbjct: 15 FRQLIKGTKKIKQDTIVHRPPRKKIKKKPEKRLLQEQAD 53
>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated.
Length = 4334
Score = 29.0 bits (65), Expect = 6.9
Identities = 7/12 (58%), Positives = 11/12 (91%)
Query: 44 HRWLKRYPRLGL 55
+WL+RYP++GL
Sbjct: 4001 RQWLQRYPQIGL 4012
Score = 29.0 bits (65), Expect = 6.9
Identities = 7/12 (58%), Positives = 11/12 (91%)
Query: 218 HRWLKRYPRLGL 229
+WL+RYP++GL
Sbjct: 4001 RQWLQRYPQIGL 4012
>gnl|CDD|235930 PRK07085, PRK07085, diphosphate--fructose-6-phosphate
1-phosphotransferase; Provisional.
Length = 555
Score = 28.7 bits (65), Expect = 7.2
Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 10/78 (12%)
Query: 104 ADGIVDCREKGLNKVPILLPE-------ATTELRLEQNDITELPPKAFANYKRLRRIDLS 156
A I D KG N IL+PE L E N + F + +
Sbjct: 290 ASVIADRAAKGKNYGVILIPEGLIEFIPEMKSLIKELNSLLAENESEFKGLDTEAQREYI 349
Query: 157 KNQISKVAVDAFQGLKSL 174
+++S ++ + KSL
Sbjct: 350 ISKLSP---ESAKLFKSL 364
>gnl|CDD|203694 pfam07600, DUF1564, Protein of unknown function (DUF1564). A
family of paralogous proteins in Leptospira interrogans.
Several have been annotated as possible CopG-like
transcriptional regulators (see pfam01402).
Length = 167
Score = 27.7 bits (62), Expect = 8.2
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 8/40 (20%)
Query: 131 LEQNDITELPPKAFA--------NYKRLRRIDLSKNQISK 162
L + + + K +YK + RIDL +NQIS+
Sbjct: 115 LWLDGVGDSIVKTLNRGVPTFHRSYKYIWRIDLLQNQISR 154
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.138 0.441
Gapped
Lambda K H
0.267 0.0925 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,750,989
Number of extensions: 1957310
Number of successful extensions: 1615
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1584
Number of HSP's successfully gapped: 88
Length of query: 405
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 306
Effective length of database: 6,546,556
Effective search space: 2003246136
Effective search space used: 2003246136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.5 bits)