RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12210
(405 letters)
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 167 bits (425), Expect = 2e-47
Identities = 77/335 (22%), Positives = 109/335 (32%), Gaps = 54/335 (16%)
Query: 4 TLNNNNLTYLPDGVFAELFRLRTLRISEN--SFICDCHLSWLHRWLKRYPRLGLYTKCFA 61
TL NLT +P + L L LR+ + I D L+R Y
Sbjct: 158 TLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMT 217
Query: 62 PSHIKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPIL 121
P+ + G N+ + I C L VP L
Sbjct: 218 PNCLYGLNLTSL--------------------------------SITHCN---LTAVPYL 242
Query: 122 LPEATTELR---LEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLT 178
LR L N I+ + RL+ I L Q++ V AF+GL L L
Sbjct: 243 AVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLN 302
Query: 179 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSH 238
++ N LT L + VF + L TL + N CDC L W+ R R C P
Sbjct: 303 VSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPEF 362
Query: 239 IKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHP 298
++G+ D P+ R R+ + V C A+ P P
Sbjct: 363 VQGKEFKDFPDVLLPN---YFTCRRARIRDRKAQQVFVDEGHTV---QFVCRAD-GDPPP 415
Query: 299 ----CRCADGIVDCREKGLNKVPILLPEATTELTY 329
+V + G V P+ T E+ Y
Sbjct: 416 AILWLSPRKHLVSAKSNGRLTV---FPDGTLEVRY 447
Score = 135 bits (342), Expect = 1e-35
Identities = 42/114 (36%), Positives = 56/114 (49%), Gaps = 2/114 (1%)
Query: 96 SCPHPCRCAD--GIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRI 153
CP C C+ V C K VP +P T L L +N I L FA++ L +
Sbjct: 2 GCPPRCECSAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEEL 61
Query: 154 DLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENS 207
+L++N +S V AF L +L +L L +N L +P GVF L L L ISEN
Sbjct: 62 ELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENK 115
Score = 107 bits (269), Expect = 1e-25
Identities = 33/119 (27%), Positives = 51/119 (42%), Gaps = 2/119 (1%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
T+L + +N I L F + L+ +++ N + ++ AF GL SL LTL NLT
Sbjct: 107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS 166
Query: 187 LPDGVFAELFRLRTLRISEN--SFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQN 243
+P + L L LR+ + I D L+R Y P+ + G N
Sbjct: 167 IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN 225
Score = 89.8 bits (223), Expect = 1e-19
Identities = 39/222 (17%), Positives = 70/222 (31%), Gaps = 66/222 (29%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRW-LKRYPRL-GLYTKCFAP 62
+ +P+G+ E R L + +N + L++ +P L L
Sbjct: 18 CHRKRFVAVPEGIPTE---TRLLDLGKN------RIKTLNQDEFASFPHLEEL------- 61
Query: 63 SHIKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILL 122
+ + + F L + L
Sbjct: 62 -ELNENIVSAVEPGAF----------------------------------NNLFNLRTL- 85
Query: 123 PEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNN 182
L N + +P F L ++D+S+N+I + FQ L +L SL + +N
Sbjct: 86 -------GLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN 138
Query: 183 NLTYLPDGVFAELFRLRTLRISEN--SFI---CDCHLSWLHR 219
+L Y+ F+ L L L + + + I HL L
Sbjct: 139 DLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIV 180
Score = 78.6 bits (194), Expect = 5e-16
Identities = 28/118 (23%), Positives = 42/118 (35%), Gaps = 18/118 (15%)
Query: 294 SCPHPCRCAD--GIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYIS----N 347
CP C C+ V C K VP +P T L L + I +
Sbjct: 2 GCPPRCECSAQDRAVLCHRKRFVAVPEGIPTETRLLD-----------LGKNRIKTLNQD 50
Query: 348 NFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
F + + L +N ++ + P AF N LR + L N + +P F L +
Sbjct: 51 EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTK 108
Score = 53.6 bits (129), Expect = 5e-08
Identities = 10/47 (21%), Positives = 19/47 (40%)
Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
+ ++T +P A + LR + L N I+ + RL+
Sbjct: 230 SITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQE 276
Score = 50.9 bits (122), Expect = 4e-07
Identities = 12/46 (26%), Positives = 18/46 (39%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
L N I+ + RL+ I+L + + P AF LR
Sbjct: 255 LSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRV 300
Score = 50.9 bits (122), Expect = 5e-07
Identities = 11/47 (23%), Positives = 25/47 (53%)
Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
+ ND+ + +AF+ L ++ LE+ ++T +P +A ++ L
Sbjct: 134 EVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIV 180
Score = 48.2 bits (115), Expect = 3e-06
Identities = 11/47 (23%), Positives = 18/47 (38%)
Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
+L + + P AF LR + + N +T L F + L
Sbjct: 278 QLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLET 324
Score = 48.2 bits (115), Expect = 3e-06
Identities = 12/47 (25%), Positives = 24/47 (51%)
Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
LE+ ++T +P +A ++ L +RL +I + +F RL+
Sbjct: 158 TLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKV 204
Score = 39.7 bits (93), Expect = 0.001
Identities = 6/50 (12%), Positives = 15/50 (30%)
Query: 355 RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
+ + + L + + ++T +P A + LR
Sbjct: 203 KVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRF 252
Score = 32.4 bits (74), Expect = 0.30
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDI 388
+ N +T L F + L + L+ N +
Sbjct: 303 VSGNQLTTLEESVFHSVGNLETLILDSNPL 332
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor
complex, developmental protein, domain, roundabout,
chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Length = 220
Score = 151 bits (383), Expect = 6e-44
Identities = 66/214 (30%), Positives = 94/214 (43%), Gaps = 48/214 (22%)
Query: 93 AEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDI---------------- 136
CP C C++ IVDCR KGL ++P LPE TE+RLEQN I
Sbjct: 1 GSLHCPAACTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRR 60
Query: 137 --------TELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLP 188
+EL P AF + L + L N+I+++ F+GL SL L LN N + L
Sbjct: 61 IDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLR 120
Query: 189 DGVFAELFRLR------------------------TLRISENSFICDCHLSWLHRWLKRY 224
F +L L T+ +++N FICDCHL WL +L
Sbjct: 121 VDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKWLADYLHTN 180
Query: 225 PRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSS 258
P +C +P + + I I +F+CS ++
Sbjct: 181 PIETSGARCTSPRRLANKRIGQIKSKKFRCSAAA 214
Score = 84.7 bits (210), Expect = 3e-19
Identities = 43/114 (37%), Positives = 53/114 (46%), Gaps = 30/114 (26%)
Query: 291 AEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFK 350
CP C C++ IVDCR KGL ++P LPE TE+
Sbjct: 1 GSLHCPAACTCSNNIVDCRGKGLTEIPTNLPETITEI----------------------- 37
Query: 351 RWTNRSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
RLEQN I +PP AF+ YK+LRRI L N I+EL P AF + L
Sbjct: 38 -------RLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNS 84
Score = 84.7 bits (210), Expect = 3e-19
Identities = 26/84 (30%), Positives = 42/84 (50%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSH 64
L +N L + G F+ L ++T+ +++N FICDCHL WL +L P +C +P
Sbjct: 135 LYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKWLADYLHTNPIETSGARCTSPRR 194
Query: 65 IKGQNILDIPEHEFKCSGPVEKPT 88
+ + I I +F+CS
Sbjct: 195 LANKRIGQIKSKKFRCSAAAHHHH 218
Score = 37.7 bits (88), Expect = 0.003
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
L+NN ++ L F L L +L + N
Sbjct: 63 LSNNQISELAPDAFQGLRSLNSLVLYGN 90
Score = 34.2 bits (79), Expect = 0.049
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENS 33
L N + +P G F+ +LR + +S N
Sbjct: 39 LEQNTIKVIPPGAFSPYKKLRRIDLSNNQ 67
Score = 30.0 bits (68), Expect = 1.1
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 349 FKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQN 386
F+ N L N + + F+ + ++ + L QN
Sbjct: 124 FQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis,
glycoprotein, secreted, chemotaxis, LRR structural
protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Length = 220
Score = 148 bits (375), Expect = 9e-43
Identities = 57/210 (27%), Positives = 88/210 (41%), Gaps = 49/210 (23%)
Query: 96 SCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQND-------------------- 135
+CP CRC VDC + LNK+P +P+ T ELRL N+
Sbjct: 4 ACPEKCRCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKIN 63
Query: 136 -----ITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDG 190
IT++ AF + I L+ N++ V F+GL+SL +L L +N +T + +
Sbjct: 64 FSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGND 123
Query: 191 VFAELFRLR------------------------TLRISENSFICDCHLSWLHRWLKRYPR 226
F L +R TL + N F C+C+L+WL WL++
Sbjct: 124 SFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAWLGEWLRKKRI 183
Query: 227 LGLYTKCFAPSHIKGQNILDIPEHEFKCSG 256
+ +C P +K I D+ +F C
Sbjct: 184 VTGNPRCQKPYFLKEIPIQDVAIQDFTCDD 213
Score = 86.2 bits (214), Expect = 8e-20
Identities = 25/84 (29%), Positives = 39/84 (46%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSH 64
L +N +T + G F L L TL + N F C+C+L+WL WL++ + +C P
Sbjct: 136 LYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAWLGEWLRKKRIVTGNPRCQKPYF 195
Query: 65 IKGQNILDIPEHEFKCSGPVEKPT 88
+K I D+ +F C
Sbjct: 196 LKEIPIQDVAIQDFTCDDAHHHHH 219
Score = 75.1 bits (185), Expect = 7e-16
Identities = 31/117 (26%), Positives = 46/117 (39%), Gaps = 17/117 (14%)
Query: 294 SCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISN-----N 348
+CP CRC VDC + LNK+P +P+ T EL L + +
Sbjct: 4 ACPEKCRCEGTTVDCSNQKLNKIPEHIPQYTAEL-----------RLNNNEFTVLEATGI 52
Query: 349 FKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
FK+ R N IT++ AF + I L N + + K F + L+
Sbjct: 53 FKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKT 109
Score = 36.6 bits (85), Expect = 0.008
Identities = 6/28 (21%), Positives = 14/28 (50%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
+NN +T + +G F + + ++ N
Sbjct: 64 FSNNKITDIEEGAFEGASGVNEILLTSN 91
Score = 30.4 bits (69), Expect = 0.73
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 349 FKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQN 386
F ++ R L N IT + P AF L + L N
Sbjct: 125 FIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163
Score = 28.5 bits (64), Expect = 3.5
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 5 LNNNNLTYLP-DGVFAELFRLRTLRISEN 32
LNNN T L G+F +L +LR + S N
Sbjct: 39 LNNNEFTVLEATGIFKKLPQLRKINFSNN 67
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition,
OMGP, MAG, NOGO- signal transduction, neuronal
regeneration, ligand binding; HET: NDG MAN NAG BMA;
1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Length = 285
Score = 147 bits (372), Expect = 1e-41
Identities = 39/129 (30%), Positives = 67/129 (51%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
T L L N I+ +P +AF L R+ L +N+++ V AF+ L L +L L NNL+
Sbjct: 156 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 215
Query: 187 LPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILD 246
LP A L L+ LR+++N ++CDC L WL+++ C P + G+++
Sbjct: 216 LPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKR 275
Query: 247 IPEHEFKCS 255
+ ++ +
Sbjct: 276 LAANDLQGC 284
Score = 122 bits (307), Expect = 3e-32
Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
Query: 97 CPHPCRCADG---IVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRI 153
CP C C + C ++GL VP+ +P A+ + L N I+ +P +F + L +
Sbjct: 2 CPGACVCYNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTIL 61
Query: 154 DLSKNQISKVAVDAFQGLKSLTSLTLNNNN-LTYLPDGVFAELFRLRTLRISEN 206
L N ++++ AF GL L L L++N L + F L RL TL +
Sbjct: 62 WLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC 115
Score = 92.4 bits (230), Expect = 2e-21
Identities = 21/77 (27%), Positives = 39/77 (50%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSH 64
L NNL+ LP A L L+ LR+++N ++CDC L WL+++ C P
Sbjct: 208 LFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQR 267
Query: 65 IKGQNILDIPEHEFKCS 81
+ G+++ + ++ +
Sbjct: 268 LAGRDLKRLAANDLQGC 284
Score = 71.6 bits (176), Expect = 3e-14
Identities = 22/112 (19%), Positives = 36/112 (32%), Gaps = 33/112 (29%)
Query: 295 CPHPCRCADG---IVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKR 351
CP C C + C ++GL VP+ +P A+ +
Sbjct: 2 CPGACVCYNEPKVTTSCPQQGLQAVPVGIPAASQRI------------------------ 37
Query: 352 WTNRSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLR 403
L N I+ +P +F + L + L N + + AF L
Sbjct: 38 ------FLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83
Score = 49.2 bits (118), Expect = 9e-07
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
L N I+ +P +AF L R+ L QN + + P AF + RL
Sbjct: 160 LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT 205
Score = 47.7 bits (114), Expect = 3e-06
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
L+ N + LP F + L + L N I+ +P +AF L R
Sbjct: 135 YLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181
Score = 46.5 bits (111), Expect = 6e-06
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
L QN + + P AF + RL + L N+++ LP +A A + L+
Sbjct: 184 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQY 229
Score = 38.4 bits (90), Expect = 0.002
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENS 33
L+ L L G+F L L+ L + +N+
Sbjct: 112 LDRCGLQELGPGLFRGLAALQYLYLQDNA 140
Score = 38.0 bits (89), Expect = 0.003
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
L +N L LPD F +L L L + N
Sbjct: 136 LQDNALQALPDDTFRDLGNLTHLFLHGN 163
Score = 37.3 bits (87), Expect = 0.006
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFI 35
L++N L + F L L L +S+N+ +
Sbjct: 63 LHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93
Score = 34.6 bits (80), Expect = 0.042
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 6 NNNNLTYLPDGVFAELFRLRTLRISEN 32
+N L + F L RL TL +
Sbjct: 89 DNAQLRSVDPATFHGLGRLHTLHLDRC 115
Score = 34.2 bits (79), Expect = 0.065
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
L+ N ++++P F L L + N
Sbjct: 39 LHGNRISHVPAASFRACRNLTILWLHSN 66
Score = 31.5 bits (72), Expect = 0.47
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQN 386
L N+++ LP +A A + L+ +RL N
Sbjct: 208 LFANNLSALPTEALAPLRALQYLRLNDN 235
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 145 bits (367), Expect = 3e-39
Identities = 43/131 (32%), Positives = 71/131 (54%), Gaps = 2/131 (1%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
EL + N E+ P +F L+++ + +Q+S + +AF GL SL L L +NNL+
Sbjct: 221 EELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS 280
Query: 187 LPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLY--TKCFAPSHIKGQNI 244
LP +F L L L + N + CDC + WL WL+ Y +C AP H++G+ +
Sbjct: 281 LPHDLFTPLRYLVELHLHHNPWNCDCDILWLAWWLREYIPTNSTCCGRCHAPMHMRGRYL 340
Query: 245 LDIPEHEFKCS 255
+++ + F+CS
Sbjct: 341 VEVDQASFQCS 351
Score = 132 bits (334), Expect = 1e-34
Identities = 42/124 (33%), Positives = 62/124 (50%), Gaps = 2/124 (1%)
Query: 87 PTGECAAEPSCPHPCRCADGI--VDCREKGLNKVPILLPEATTELRLEQNDITELPPKAF 144
A +CP C C++ V C +GL++VP +P T L L +N+I + F
Sbjct: 36 AAAASAGPQNCPSVCSCSNQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTF 95
Query: 145 ANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRIS 204
+ L + L +N I ++ V AF GL SL +L L +N LT +P G F L +LR L +
Sbjct: 96 RHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR 155
Query: 205 ENSF 208
N
Sbjct: 156 NNPI 159
Score = 92.1 bits (229), Expect = 2e-20
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLY--TKCFAP 62
L +NNL+ LP +F L L L + N + CDC + WL WL+ Y +C AP
Sbjct: 273 LAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDILWLAWWLREYIPTNSTCCGRCHAP 332
Query: 63 SHIKGQNILDIPEHEFKCSGPV 84
H++G+ ++++ + F+CS P
Sbjct: 333 MHMRGRYLVEVDQASFQCSAPF 354
Score = 82.5 bits (204), Expect = 2e-17
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSK-NQISKVAVDAFQGLKSLTSLTLNNNNLT 185
EL L N I +P AF L R+DL + ++ ++ AF+GL +L L L N+
Sbjct: 150 RELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK 209
Query: 186 YLPDGVFAELFRLRTLRISENSF 208
+P+ L L L +S N F
Sbjct: 210 DMPN--LTPLVGLEELEMSGNHF 230
Score = 77.5 bits (191), Expect = 1e-15
Identities = 30/132 (22%), Positives = 48/132 (36%), Gaps = 28/132 (21%)
Query: 285 PTGECAAEPSCPHPCRCADGI--VDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLY 342
A +CP C C++ V C +GL++VP +P T L
Sbjct: 36 AAAASAGPQNCPSVCSCSNQFSKVVCTRRGLSEVPQGIPSNTRYL--------------- 80
Query: 343 SYISNN---------FKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELP 392
+ N F+ + +L +N I ++ AF L + L N +T +P
Sbjct: 81 -NLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP 139
Query: 393 PKAFANYKRLRR 404
AF +LR
Sbjct: 140 SGAFEYLSKLRE 151
Score = 49.7 bits (119), Expect = 8e-07
Identities = 8/46 (17%), Positives = 19/46 (41%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
+ N E+ P +F L+++ + + ++ + AF L
Sbjct: 225 MSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVE 270
Score = 47.4 bits (113), Expect = 5e-06
Identities = 10/60 (16%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 346 SNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
+F ++ + + + ++ + AF L + L N+++ LP F + L
Sbjct: 235 PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVE 294
Score = 42.8 bits (101), Expect = 1e-04
Identities = 9/47 (19%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
L +I ++P L + + N E+ P +F L++
Sbjct: 202 NLGMCNIKDMP--NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKK 246
Score = 40.5 bits (95), Expect = 8e-04
Identities = 8/45 (17%), Positives = 15/45 (33%), Gaps = 2/45 (4%)
Query: 360 EQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
E + + AF L+ + L +I ++P L
Sbjct: 180 ELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP--NLTPLVGLEE 222
Score = 39.0 bits (91), Expect = 0.002
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSF 34
L +N LT +P G F L +LR L + N
Sbjct: 130 LFDNWLTVIPSGAFEYLSKLRELWLRNNPI 159
Score = 37.4 bits (87), Expect = 0.006
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
L N++ + G F L L TL + +N
Sbjct: 106 LGRNSIRQIEVGAFNGLASLNTLELFDN 133
Score = 36.6 bits (85), Expect = 0.013
Identities = 10/40 (25%), Positives = 17/40 (42%)
Query: 6 NNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHR 45
L Y+ +G F LF L+ L + + +L+ L
Sbjct: 180 ELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVG 219
Score = 35.5 bits (82), Expect = 0.031
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
L NN + +P F + L L + E
Sbjct: 154 LRNNPIESIPSYAFNRVPSLMRLDLGEL 181
Score = 35.1 bits (81), Expect = 0.040
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
L NN+ + F L L L++ N
Sbjct: 82 LMENNIQMIQADTFRHLHHLEVLQLGRN 109
Score = 30.9 bits (70), Expect = 0.88
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQN 386
L N+++ LP F + L + L N
Sbjct: 273 LAHNNLSSLPHDLFTPLRYLVELHLHHN 300
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 141 bits (358), Expect = 3e-38
Identities = 38/131 (29%), Positives = 68/131 (51%), Gaps = 2/131 (1%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
EL L N ++ + P +F L+++ + ++QI + +AF L+SL + L +NNLT
Sbjct: 210 DELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTL 269
Query: 187 LPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYT--KCFAPSHIKGQNI 244
LP +F L L + + N + C+C + WL W+K +C P ++KG+ I
Sbjct: 270 LPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCARCNTPPNLKGRYI 329
Query: 245 LDIPEHEFKCS 255
++ ++ F C
Sbjct: 330 GELDQNYFTCY 340
Score = 132 bits (333), Expect = 1e-34
Identities = 39/121 (32%), Positives = 62/121 (51%), Gaps = 2/121 (1%)
Query: 90 ECAAEPSCPHPCRCADGI--VDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANY 147
E + +CP C C++ V C K L +VP + T L L +N I + +F +
Sbjct: 28 ETGSAQTCPSVCSCSNQFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHL 87
Query: 148 KRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENS 207
+ L + LS+N I + + AF GL +L +L L +N LT +P+G F L +L+ L + N
Sbjct: 88 RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP 147
Query: 208 F 208
Sbjct: 148 I 148
Score = 90.6 bits (225), Expect = 5e-20
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYT--KCFAP 62
L +NNLT LP +F L L + + N + C+C + WL W+K +C P
Sbjct: 262 LAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCARCNTP 321
Query: 63 SHIKGQNILDIPEHEFKCSGPV 84
++KG+ I ++ ++ F C PV
Sbjct: 322 PNLKGRYIGELDQNYFTCYAPV 343
Score = 83.3 bits (206), Expect = 1e-17
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSK-NQISKVAVDAFQGLKSLTSLTLNNNNLT 185
EL L N I +P AF LRR+DL + ++S ++ AF+GL +L L L NL
Sbjct: 139 KELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR 198
Query: 186 YLPDGVFAELFRLRTLRISENSF 208
+P+ L +L L +S N
Sbjct: 199 EIPN--LTPLIKLDELDLSGNHL 219
Score = 76.7 bits (189), Expect = 2e-15
Identities = 29/129 (22%), Positives = 45/129 (34%), Gaps = 28/129 (21%)
Query: 288 ECAAEPSCPHPCRCADGI--VDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYI 345
E + +CP C C++ V C K L +VP + T L +
Sbjct: 28 ETGSAQTCPSVCSCSNQFSKVICVRKNLREVPDGISTNTRLL----------------NL 71
Query: 346 SNN---------FKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKA 395
N FK + +L +N I + AF L + L N +T +P A
Sbjct: 72 HENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGA 131
Query: 396 FANYKRLRR 404
F +L+
Sbjct: 132 FVYLSKLKE 140
Score = 48.6 bits (116), Expect = 2e-06
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 346 SNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
+F+ + + + Q+ I + AF N + L I L N++T LP F L R
Sbjct: 224 PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLER 283
Score = 48.6 bits (116), Expect = 2e-06
Identities = 11/46 (23%), Positives = 22/46 (47%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
L N ++ + P +F L+++ + Q+ I + AF N + L
Sbjct: 214 LSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVE 259
Score = 40.5 bits (95), Expect = 8e-04
Identities = 9/47 (19%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
L ++ E+P +L + L N ++ + P +F L++
Sbjct: 191 NLAMCNLREIP--NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQK 235
Score = 38.6 bits (90), Expect = 0.003
Identities = 9/45 (20%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 360 EQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
E ++ + AF LR + L ++ E+P +L
Sbjct: 169 ELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP--NLTPLIKLDE 211
Score = 38.2 bits (89), Expect = 0.004
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSF 34
L +N LT +P+G F L +L+ L + N
Sbjct: 119 LFDNRLTTIPNGAFVYLSKLKELWLRNNPI 148
Score = 37.4 bits (87), Expect = 0.008
Identities = 10/40 (25%), Positives = 19/40 (47%)
Query: 6 NNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHR 45
L+Y+ +G F L LR L ++ + +L+ L +
Sbjct: 169 ELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIK 208
Score = 37.0 bits (86), Expect = 0.009
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
L+ N++ + G F L L TL + +N
Sbjct: 95 LSRNHIRTIEIGAFNGLANLNTLELFDN 122
Score = 35.5 bits (82), Expect = 0.030
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
L+ N + + F L L L++S N
Sbjct: 71 LHENQIQIIKVNSFKHLRHLEILQLSRN 98
Score = 31.6 bits (72), Expect = 0.49
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQN 386
L N++T LP F L RI L N
Sbjct: 261 NLAHNNLTLLPHDLFTPLHHLERIHLHHN 289
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance,
leucine-rich repeat glycoprotein, EGF-like domain,
signal protein; 2.8A {Drosophila melanogaster} SCOP:
c.10.2.7
Length = 192
Score = 130 bits (329), Expect = 3e-36
Identities = 58/185 (31%), Positives = 89/185 (48%), Gaps = 25/185 (13%)
Query: 97 CPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQND--------------------- 135
CP C C VDC +GL ++P +P TTEL L N+
Sbjct: 2 CPAMCHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLEL 61
Query: 136 ----ITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGV 191
+T + P AF ++ + L +N+I +++ F GL L +L L +N ++ + G
Sbjct: 62 KRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGS 121
Query: 192 FAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHE 251
F L L +L ++ N F C+CHL+W WL++ G +C APS ++ I D+P E
Sbjct: 122 FEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSE 181
Query: 252 FKCSG 256
FKCS
Sbjct: 182 FKCSS 186
Score = 68.9 bits (169), Expect = 6e-14
Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 17/116 (14%)
Query: 295 CPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISN-----NF 349
CP C C VDC +GL ++P +P TTEL +L + + F
Sbjct: 2 CPAMCHCEGTTVDCTGRGLKEIPRDIPLHTTEL-----------LLNDNELGRISSDGLF 50
Query: 350 KRWTNRSR-RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
R + + L++N +T + P AF ++ ++L +N I E+ K F +L+
Sbjct: 51 GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKT 106
Score = 65.8 bits (161), Expect = 7e-13
Identities = 29/82 (35%), Positives = 44/82 (53%)
Query: 4 TLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPS 63
L +N ++ + G F L L +L ++ N F C+CHL+W WL++ G +C APS
Sbjct: 108 NLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPS 167
Query: 64 HIKGQNILDIPEHEFKCSGPVE 85
++ I D+P EFKCS
Sbjct: 168 KVRDVQIKDLPHSEFKCSSENS 189
Score = 28.4 bits (64), Expect = 3.2
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 5 LNNNNLTYL-PDGVFAELFRLRTLRISEN 32
LN+N L + DG+F L L L + N
Sbjct: 36 LNDNELGRISSDGLFGRLPHLVKLELKRN 64
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein;
HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A*
1xcd_A*
Length = 330
Score = 131 bits (331), Expect = 4e-35
Identities = 50/133 (37%), Positives = 64/133 (48%), Gaps = 6/133 (4%)
Query: 77 EFKCSGPVEK--PTGECAAE-PSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQ 133
E GP E E P CP C+C +V C + GL KVP LP T L L+
Sbjct: 2 EASGIGPEEHFPEVPEIEPMGPVCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQN 61
Query: 134 NDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFA 193
N ITE+ F N K L + L N+ISK++ AF L L L L+ N L LP+ +
Sbjct: 62 NKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPK 121
Query: 194 ELFRLRTLRISEN 206
L+ LR+ EN
Sbjct: 122 ---TLQELRVHEN 131
Score = 94.7 bits (236), Expect = 6e-22
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 115 LNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSL 174
+ +P LP + TEL L+ N IT++ + L ++ LS N IS V + L
Sbjct: 183 ITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL 242
Query: 175 TSLTLNNNNLTYLPDGVFAELFRLRTLRISENSF 208
L LNNN L +P G A+ ++ + + N+
Sbjct: 243 RELHLNNNKLVKVPGG-LADHKYIQVVYLHNNNI 275
Score = 89.3 bits (222), Expect = 4e-20
Identities = 25/95 (26%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 115 LNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAV--DAFQGLK 172
L ++P +P+ ELR+ +N+IT++ F ++ ++L N + + AFQG+K
Sbjct: 112 LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 171
Query: 173 SLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENS 207
L+ + + + N+T +P G+ L L + N
Sbjct: 172 KLSYIRIADTNITTIPQGLPP---SLTELHLDGNK 203
Score = 82.4 bits (204), Expect = 1e-17
Identities = 41/146 (28%), Positives = 57/146 (39%), Gaps = 29/146 (19%)
Query: 268 EECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTEL 327
+E S + V + P CP C+C +V C + GL KVP LP T L
Sbjct: 1 DEASGIGPEEHFPEVPEIE---PMGPVCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALL 57
Query: 328 TYMVSIDRVDKVLLYSYISNN---------FKRWTN-RSRRLEQNDITELPPKAFANYKR 377
+ NN FK N + L N I+++ P AFA +
Sbjct: 58 ----------------DLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVK 101
Query: 378 LRRIRLEQNDITELPPKAFANYKRLR 403
L R+ L +N + ELP K + LR
Sbjct: 102 LERLYLSKNQLKELPEKMPKTLQELR 127
Score = 72.7 bits (179), Expect = 2e-14
Identities = 17/88 (19%), Positives = 38/88 (43%), Gaps = 9/88 (10%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAF------QGLKSLTSLTLN 180
EL L N + ++P A++K ++ + L N IS + + F S + ++L
Sbjct: 243 RELHLNNNKLVKVPG-GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLF 301
Query: 181 NNNLTY--LPDGVFAELFRLRTLRISEN 206
+N + Y + F ++ +++
Sbjct: 302 SNPVQYWEIQPSTFRCVYVRAAVQLGNY 329
Score = 61.6 bits (150), Expect = 1e-10
Identities = 30/191 (15%), Positives = 56/191 (29%), Gaps = 50/191 (26%)
Query: 4 TLNNNNLTYLPDGVFAELFRLRTLRISEN--SFICDCHLSWLHRWLKRYPRLGLYTKCFA 61
+ + N+T +P G+ L L + N + + L L+ L +LGL
Sbjct: 177 RIADTNITTIPQGLPP---SLTELHLDGNKITKVDAASLKGLNN-LA---KLGLS----- 224
Query: 62 PSHIKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPIL 121
+I + + PH + L KVP
Sbjct: 225 -----FNSISAVDNGSLA----------------NTPHLRE-----LHLNNNKLVKVPGG 258
Query: 122 LPEAT--TELRLEQNDITELPPKAFA------NYKRLRRIDLSKNQISKVAV--DAFQGL 171
L + + L N+I+ + F + L N + + F+ +
Sbjct: 259 LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV 318
Query: 172 KSLTSLTLNNN 182
++ L N
Sbjct: 319 YVRAAVQLGNY 329
Score = 50.0 bits (120), Expect = 6e-07
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLR 403
L+ N IT++ + L ++ L N I+ + + AN LR
Sbjct: 198 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLR 243
Score = 46.5 bits (111), Expect = 7e-06
Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
R+ +IT +P + L + L+ N IT++ + L +
Sbjct: 177 RIADTNITTIPQGLPPS---LTELHLDGNKITKVDAASLKGLNNLAK 220
Score = 43.1 bits (102), Expect = 1e-04
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 359 LEQNDITE--LPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLR 403
L N + + AF K+L IR+ +IT +P + L
Sbjct: 152 LGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELH 198
Score = 40.8 bits (96), Expect = 5e-04
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
L N I+ + + AN LR + L N + ++P A++K ++
Sbjct: 222 GLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG-GLADHKYIQV 267
Score = 40.0 bits (94), Expect = 0.001
Identities = 9/54 (16%), Positives = 15/54 (27%), Gaps = 8/54 (14%)
Query: 358 RLEQNDITELPPKAFA------NYKRLRRIRLEQNDI--TELPPKAFANYKRLR 403
L N+I+ + F + L N + E+ P F
Sbjct: 269 YLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRA 322
Score = 38.4 bits (90), Expect = 0.003
Identities = 9/39 (23%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFA 397
L N + ++P A++K ++ + L N+I+ + F
Sbjct: 247 LNNNKLVKVPG-GLADHKYIQVVYLHNNNISAIGSNDFC 284
Score = 37.7 bits (88), Expect = 0.004
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
L NN ++ + G FA L +L L +S+N
Sbjct: 83 LINNKISKISPGAFAPLVKLERLYLSKN 110
Score = 36.5 bits (85), Expect = 0.010
Identities = 6/29 (20%), Positives = 14/29 (48%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENS 33
++ N +T + VF L ++ + + N
Sbjct: 128 VHENEITKVRKSVFNGLNQMIVVELGTNP 156
Score = 33.8 bits (78), Expect = 0.086
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
L NN +T + DG F L L TL + N
Sbjct: 59 LQNNKITEIKDGDFKNLKNLHTLILINN 86
Score = 33.0 bits (76), Expect = 0.14
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 5 LNNNNLT--YLPDGVFAELFRLRTLRISEN 32
L N L + +G F + +L +RI++
Sbjct: 152 LGTNPLKSSGIENGAFQGMKKLSYIRIADT 181
Score = 31.1 bits (71), Expect = 0.60
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
L+ N L LP+ + L+ LR+ EN
Sbjct: 107 LSKNQLKELPEKMPK---TLQELRVHEN 131
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein,
signaling; HET: NAG FLC; 3.40A {Bos taurus}
Length = 332
Score = 130 bits (328), Expect = 9e-35
Identities = 39/116 (33%), Positives = 56/116 (48%), Gaps = 3/116 (2%)
Query: 92 AAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLR 151
CP C C +V C + GL VP + TT L L+ NDI+EL F + L
Sbjct: 22 TYSAMCPFGCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLY 81
Query: 152 RIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENS 207
+ L N+ISK+ AF L+ L L ++ N+L +P + + L LRI +N
Sbjct: 82 ALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPS---SLVELRIHDNR 134
Score = 96.2 bits (240), Expect = 2e-22
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 115 LNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSL 174
L +P LPE EL L+ N I + + Y +L R+ L NQI + + L +L
Sbjct: 184 LTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTL 243
Query: 175 TSLTLNNNNLTYLPDGVFAELFRLRTLRISEN 206
L L+NN L+ +P G +L L+ + + N
Sbjct: 244 RELHLDNNKLSRVPAG-LPDLKLLQVVYLHTN 274
Score = 84.3 bits (209), Expect = 2e-18
Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 3/81 (3%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
LR+ + +T +P L + L N+I + ++ L L L +N +
Sbjct: 175 NYLRISEAKLTGIPKDLPET---LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM 231
Query: 187 LPDGVFAELFRLRTLRISENS 207
+ +G + L LR L + N
Sbjct: 232 IENGSLSFLPTLRELHLDNNK 252
Score = 80.1 bits (198), Expect = 7e-17
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
Query: 115 LNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAV--DAFQGLK 172
L ++P LP + ELR+ N I ++P F+ + + I++ N + AF GLK
Sbjct: 114 LVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK 173
Query: 173 SLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENS 207
L L ++ LT +P + L L + N
Sbjct: 174 -LNYLRISEAKLTGIPKDLPE---TLNELHLDHNK 204
Score = 79.3 bits (196), Expect = 1e-16
Identities = 28/115 (24%), Positives = 43/115 (37%), Gaps = 30/115 (26%)
Query: 290 AAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNF 349
CP C C +V C + GL VP + TT L
Sbjct: 22 TYSAMCPFGCHCHLRVVQCSDLGLKAVPKEISPDTTLLD--------------------- 60
Query: 350 KRWTNRSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
L+ NDI+EL F + L + L N I+++ KAF+ ++L++
Sbjct: 61 ---------LQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQK 106
Score = 77.7 bits (192), Expect = 4e-16
Identities = 21/108 (19%), Positives = 37/108 (34%), Gaps = 17/108 (15%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
L L N I + + + LR + L N++S+V LK L + L+ NN+T
Sbjct: 220 YRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVP-AGLPDLKLLQVVYLHTNNITK 278
Query: 187 LPDGVFAELF------RLRTLRISEN----------SFICDCHLSWLH 218
+ F + + + N +F C +
Sbjct: 279 VGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQ 326
Score = 71.2 bits (175), Expect = 7e-14
Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 9/88 (10%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLK------SLTSLTLN 180
EL L+ N ++ +P + K L+ + L N I+KV V+ F + ++L
Sbjct: 244 RELHLDNNKLSRVPA-GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLF 302
Query: 181 NNNLTY--LPDGVFAELFRLRTLRISEN 206
NN + Y + F + ++
Sbjct: 303 NNPVPYWEVQPATFRCVTDRLAIQFGNY 330
Score = 55.8 bits (135), Expect = 7e-09
Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 10/78 (12%)
Query: 115 LNKVPILLPEAT--TELRLEQNDITELPPKAFA------NYKRLRRIDLSKNQISKVAV- 165
L++VP LP+ + L N+IT++ F I L N + V
Sbjct: 253 LSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQ 312
Query: 166 -DAFQGLKSLTSLTLNNN 182
F+ + ++ N
Sbjct: 313 PATFRCVTDRLAIQFGNY 330
Score = 49.6 bits (119), Expect = 7e-07
Identities = 11/46 (23%), Positives = 19/46 (41%)
Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLR 403
L+ N I + + Y +L R+ L N I + + + LR
Sbjct: 199 HLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLR 244
Score = 46.2 bits (110), Expect = 1e-05
Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 4/92 (4%)
Query: 314 NKVPILLPEATTELTYMVSIDRVDKVLLYSYISNN-FKRWTNRSRRLEQNDITELPPKAF 372
N++ + + L M I+ L S F R+ + +T +P
Sbjct: 133 NRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLP 192
Query: 373 ANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
L + L+ N I + + Y +L R
Sbjct: 193 ET---LNELHLDHNKIQAIELEDLLRYSKLYR 221
Score = 43.9 bits (104), Expect = 5e-05
Identities = 23/157 (14%), Positives = 40/157 (25%), Gaps = 51/157 (32%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSH 64
L +N + + +G + L LR L + N LS + L L + +
Sbjct: 224 LGHNQIRMIENGSLSFLPTLRELHLDNNK------LSRVPAGLPDLKLLQVV-------Y 270
Query: 65 IKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPE 124
+ NI + ++F C K
Sbjct: 271 LHTNNITKVGVNDF-------------------------------CPVGFGVKRAYY--- 296
Query: 125 ATTELRLEQNDIT--ELPPKAFANYKRLRRIDLSKNQ 159
+ L N + E+ P F I +
Sbjct: 297 --NGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331
Score = 41.5 bits (98), Expect = 3e-04
Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
L N I + + + LR + L+ N ++ +P + K L+
Sbjct: 223 GLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPA-GLPDLKLLQV 268
Score = 39.6 bits (93), Expect = 0.001
Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFAN 398
L+ N ++ +P + K L+ + L N+IT++ F
Sbjct: 247 HLDNNKLSRVPA-GLPDLKLLQVVYLHTNNITKVGVNDFCP 286
Score = 39.2 bits (92), Expect = 0.001
Identities = 11/54 (20%), Positives = 16/54 (29%), Gaps = 8/54 (14%)
Query: 358 RLEQNDITELPPKAFA------NYKRLRRIRLEQNDIT--ELPPKAFANYKRLR 403
L N+IT++ F I L N + E+ P F
Sbjct: 270 YLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRL 323
Score = 37.7 bits (88), Expect = 0.005
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
L NN ++ + + F+ L +L+ L IS+N
Sbjct: 85 LVNNKISKIHEKAFSPLRKLQKLYISKN 112
Score = 35.8 bits (83), Expect = 0.020
Identities = 5/28 (17%), Positives = 11/28 (39%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
L++N + + +L L + N
Sbjct: 200 LDHNKIQAIELEDLLRYSKLYRLGLGHN 227
Score = 35.8 bits (83), Expect = 0.022
Identities = 7/29 (24%), Positives = 16/29 (55%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENS 33
+++N + +P GVF+ L + + + N
Sbjct: 130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNP 158
Score = 33.8 bits (78), Expect = 0.088
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
L NN+++ L F L L L + N
Sbjct: 61 LQNNDISELRKDDFKGLQHLYALVLVNN 88
Score = 31.9 bits (73), Expect = 0.29
Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENS 33
++ N+L +P + + L LRI +N
Sbjct: 109 ISKNHLVEIPPNLPS---SLVELRIHDNR 134
Score = 30.8 bits (70), Expect = 0.88
Identities = 8/57 (14%), Positives = 16/57 (28%), Gaps = 16/57 (28%)
Query: 4 TLNNNNLTYLPDGVFAELF------RLRTLRISEN----------SFICDCHLSWLH 44
L+ NN+T + F + + + N +F C +
Sbjct: 270 YLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQ 326
Score = 29.6 bits (67), Expect = 2.0
Identities = 6/29 (20%), Positives = 11/29 (37%), Gaps = 3/29 (10%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENS 33
++ LT +P + L L + N
Sbjct: 179 ISEAKLTGIPKDLPE---TLNELHLDHNK 204
>2wfh_A SLIT homolog 2 protein C-product; developmental protein,
neurogenesis, splicing, glycoprotein, leucine-rich
repeat, disulfide bond, differentiation; 1.80A {Homo
sapiens}
Length = 193
Score = 124 bits (314), Expect = 3e-34
Identities = 55/186 (29%), Positives = 86/186 (46%), Gaps = 23/186 (12%)
Query: 95 PSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITE---------------- 138
CP C C D +V C KGL +P +P TEL L+ N T
Sbjct: 2 SRCPTECTCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDL 61
Query: 139 -------LPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGV 191
L ++F+N +L + LS N++ + F GLKSL L+L+ N+++ +P+G
Sbjct: 62 SNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGA 121
Query: 192 FAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHE 251
F +L L L I N CDC++ WL W+K + +C P + + +L P +
Sbjct: 122 FNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEPGIARCAGPGEMADKLLLTTPSKK 181
Query: 252 FKCSGS 257
F C+ +
Sbjct: 182 FTCAAA 187
Score = 65.4 bits (160), Expect = 1e-12
Identities = 39/127 (30%), Positives = 50/127 (39%), Gaps = 17/127 (13%)
Query: 293 PSCPHPCRCADGIVDCREKGLNKVPILLPEATTELT-YMVSIDRVDKV------LLYSYI 345
CP C C D +V C KGL +P +P TEL V K L +
Sbjct: 2 SRCPTECTCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDL 61
Query: 346 SNN---------FKRWTNRSR-RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKA 395
SNN F T L N + +PP+ F K LR + L NDI+ +P A
Sbjct: 62 SNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGA 121
Query: 396 FANYKRL 402
F + L
Sbjct: 122 FNDLSAL 128
Score = 63.5 bits (155), Expect = 5e-12
Identities = 23/82 (28%), Positives = 41/82 (50%)
Query: 4 TLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPS 63
+L+ N+++ +P+G F +L L L I N CDC++ WL W+K + +C P
Sbjct: 108 SLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEPGIARCAGPG 167
Query: 64 HIKGQNILDIPEHEFKCSGPVE 85
+ + +L P +F C+
Sbjct: 168 EMADKLLLTTPSKKFTCAAAHH 189
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein;
innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Danio rerio} PDB:
3v44_A*
Length = 455
Score = 130 bits (329), Expect = 5e-34
Identities = 62/385 (16%), Positives = 108/385 (28%), Gaps = 90/385 (23%)
Query: 97 CPHPCRCADGIVDCREKGLNKVPILLPEAT------------------------------ 126
C C +GL++VP L
Sbjct: 4 GTSECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQ 63
Query: 127 ------------------TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAV--D 166
L+L+ N +L AF L + L++ + + +
Sbjct: 64 QTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGN 123
Query: 167 AFQGLKSLTSLTLNNNNLTYL-PDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYP 225
F+ L SL L L +NN+ + P F + R L ++ N C L+ K +
Sbjct: 124 FFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFT 183
Query: 226 RLGLY--------------TKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECS 271
L L KC P LD+ + FK S + + + S
Sbjct: 184 LLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQS 243
Query: 272 TDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGI--VDCREKGLNKVPILLPEATTELTY 329
+ + A G+ D + + + + T+L
Sbjct: 244 LILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQ 303
Query: 330 MVSIDRVDKVLLYSYISNN---------FKRWTN-RSRRLEQNDITELPPKAFANYKRLR 379
+ ++ N F T+ L QN + + + F N +L
Sbjct: 304 L-------------TLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLE 350
Query: 380 RIRLEQNDITELPPKAFANYKRLRR 404
+ L N I L ++F L+
Sbjct: 351 VLDLSYNHIRALGDQSFLGLPNLKE 375
Score = 129 bits (325), Expect = 2e-33
Identities = 46/222 (20%), Positives = 76/222 (34%), Gaps = 20/222 (9%)
Query: 5 LNNNNLTYL-PDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLY------- 56
L +NN+ + P F + R L ++ N C L+ K + L L
Sbjct: 136 LRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDM 195
Query: 57 -------TKCFAPSHIKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVD 109
KC P LD+ + FK S + +
Sbjct: 196 NEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS 255
Query: 110 CREKGLNKVP-----ILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVA 164
L L ++ I L F+++ L ++ L++N+I+K+
Sbjct: 256 FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKID 315
Query: 165 VDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISEN 206
+AF GL L L L+ N L + +F L +L L +S N
Sbjct: 316 DNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN 357
Score = 33.2 bits (76), Expect = 0.15
Identities = 7/28 (25%), Positives = 16/28 (57%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
L+ N++ L + F+ L L+ L++ +
Sbjct: 37 LSLNSIAELNETSFSRLQDLQFLKVEQQ 64
Score = 30.9 bits (70), Expect = 0.78
Identities = 6/31 (19%), Positives = 11/31 (35%), Gaps = 1/31 (3%)
Query: 5 LNNNNL-TYLPDGVFAELFRLRTLRISENSF 34
+ + + F L L L++ N F
Sbjct: 61 VEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like
receptor, MD-2, LPS, leucine-rich repeat, glycoprotein,
immune response; HET: NAG BMA FUL; 1.90A {Eptatretus
burgeri}
Length = 306
Score = 126 bits (318), Expect = 2e-33
Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 4/125 (3%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
T L L Q + +L P AF + L+ +++S N + ++ L SL L + N++
Sbjct: 178 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 237
Query: 187 LPDGVFAELFR-LRTLRISENSFICDCHLSWLHRWLKRYPRLGLY---TKCFAPSHIKGQ 242
L L +++N F C C +W+K +L + +C PS +G
Sbjct: 238 SKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGM 297
Query: 243 NILDI 247
+L +
Sbjct: 298 PVLSL 302
Score = 116 bits (293), Expect = 5e-30
Identities = 34/112 (30%), Positives = 49/112 (43%), Gaps = 3/112 (2%)
Query: 97 CPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLS 156
CP C C+ + C KGL VP +P + T L LE N + LP F +L ++ LS
Sbjct: 1 CPSRCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLS 60
Query: 157 KNQISKVAV--DAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISEN 206
N +S + G SL L L+ N + + F L +L L +
Sbjct: 61 SNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHS 111
Score = 78.9 bits (195), Expect = 1e-16
Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 2/84 (2%)
Query: 127 TELRLEQNDITELPPK-AFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNN-L 184
L + +++ ++ F + + L +D+S F GL SL L + N+
Sbjct: 104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 163
Query: 185 TYLPDGVFAELFRLRTLRISENSF 208
+F EL L L +S+
Sbjct: 164 ENFLPDIFTELRNLTFLDLSQCQL 187
Score = 71.6 bits (176), Expect = 4e-14
Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 4/73 (5%)
Query: 5 LNNNNLTYLPDGVFAELFR-LRTLRISENSFICDCHLSWLHRWLKRYPRLGLY---TKCF 60
+ N++ L L +++N F C C +W+K +L + +C
Sbjct: 230 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECA 289
Query: 61 APSHIKGQNILDI 73
PS +G +L +
Sbjct: 290 TPSDKQGMPVLSL 302
Score = 66.6 bits (163), Expect = 2e-12
Identities = 23/111 (20%), Positives = 36/111 (32%), Gaps = 32/111 (28%)
Query: 295 CPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWTN 354
CP C C+ + C KGL VP +P + T L
Sbjct: 1 CPSRCSCSGTEIRCNSKGLTSVPTGIPSSATRL--------------------------- 33
Query: 355 RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDIT--ELPPKAFANYKRLR 403
LE N + LP F +L ++ L N ++ ++ L+
Sbjct: 34 ---ELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLK 81
Score = 46.9 bits (112), Expect = 5e-06
Identities = 10/46 (21%), Positives = 19/46 (41%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
L Q + +L P AF + L+ + + N+ L + L+
Sbjct: 182 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 227
Score = 41.9 bits (99), Expect = 2e-04
Identities = 5/41 (12%), Positives = 12/41 (29%)
Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFAN 398
+ N+ L + L+ + N I + +
Sbjct: 205 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 245
Score = 40.8 bits (96), Expect = 5e-04
Identities = 8/31 (25%), Positives = 17/31 (54%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFI 35
+++ + +G+F L L L+++ NSF
Sbjct: 133 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 163
Score = 39.6 bits (93), Expect = 0.001
Identities = 10/43 (23%), Positives = 17/43 (39%)
Query: 362 NDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
+ P F + L + L Q + +L P AF + L+
Sbjct: 161 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 203
Score = 38.5 bits (90), Expect = 0.002
Identities = 6/48 (12%), Positives = 11/48 (22%), Gaps = 1/48 (2%)
Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQN-DITELPPKAFANYKRLRR 404
+ F L +++ N P F + L
Sbjct: 132 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 179
Score = 35.4 bits (82), Expect = 0.028
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENS 33
L +N L LP GVF +L +L L +S N
Sbjct: 35 LESNKLQSLPHGVFDKLTQLTKLSLSSNG 63
Score = 33.4 bits (77), Expect = 0.10
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 5 LNNNNLTYLPD-GVFAELFRLRTLRISENS 33
++NL + + VF L L L IS
Sbjct: 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTH 137
Score = 33.1 bits (76), Expect = 0.16
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 6 NNNNLTYLPDGVFAELFRLRTLRISENSF 34
N+ +F EL L L +S+
Sbjct: 159 GNSFQENFLPDIFTELRNLTFLDLSQCQL 187
Score = 30.4 bits (69), Expect = 1.0
Identities = 6/28 (21%), Positives = 11/28 (39%), Gaps = 1/28 (3%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
L+ N + + F L +L L +
Sbjct: 85 LSFNGVITMSSN-FLGLEQLEHLDFQHS 111
Score = 27.7 bits (62), Expect = 7.7
Identities = 7/30 (23%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 5 LNNNNLTY--LPDGVFAELFRLRTLRISEN 32
L++N L++ L+ L +S N
Sbjct: 59 LSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2,
lipopeptide, innate immunity, glycoprotein, immune RES
inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Length = 353
Score = 126 bits (319), Expect = 2e-33
Identities = 36/132 (27%), Positives = 48/132 (36%), Gaps = 5/132 (3%)
Query: 91 CAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRL 150
A SC C LN +P L EA L L N IT + L
Sbjct: 24 NQASLSCDRNGIC-----KGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNL 78
Query: 151 RRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFIC 210
+ + L+ N I+ + D+F L SL L L+ N L+ L F L L L + N +
Sbjct: 79 QALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT 138
Query: 211 DCHLSWLHRWLK 222
S K
Sbjct: 139 LGETSLFSHLTK 150
Score = 88.6 bits (220), Expect = 1e-19
Identities = 22/102 (21%), Positives = 41/102 (40%), Gaps = 5/102 (4%)
Query: 128 ELRLEQNDITELPPKAF---ANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNL 184
+ L+ +EL R + ++ + +V + L L + N L
Sbjct: 231 DTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVM-KLLNQISGLLELEFSRNQL 289
Query: 185 TYLPDGVFAELFRLRTLRISENSFICDC-HLSWLHRWLKRYP 225
+PDG+F L L+ + + N + C C + +L RWL +
Sbjct: 290 KSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNS 331
Score = 76.3 bits (188), Expect = 1e-15
Identities = 9/76 (11%), Positives = 29/76 (38%)
Query: 131 LEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDG 190
+ T++ K FA L +++ + + + + +++++ L L+ L +
Sbjct: 157 GNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEI 216
Query: 191 VFAELFRLRTLRISEN 206
+ L + +
Sbjct: 217 FVDVTSSVECLELRDT 232
Score = 69.4 bits (170), Expect = 3e-13
Identities = 21/116 (18%), Positives = 29/116 (25%), Gaps = 35/116 (30%)
Query: 289 CAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNN 348
A SC C LN +P L EA L
Sbjct: 24 NQASLSCDRNGIC-----KGSSGSLNSIPSGLTEAVKSL--------------------- 57
Query: 349 FKRWTNRSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
L N IT + L+ + L N I + +F++ L
Sbjct: 58 ---------DLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104
Score = 60.5 bits (147), Expect = 2e-10
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDC-HLSWLHRWLKRYP 51
+ N L +PDG+F L L+ + + N + C C + +L RWL +
Sbjct: 284 FSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNS 331
Score = 43.2 bits (102), Expect = 1e-04
Identities = 5/47 (10%), Positives = 15/47 (31%)
Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
++ +D+ PK+ + + + + L L +
Sbjct: 180 EIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVEC 226
Score = 41.3 bits (97), Expect = 4e-04
Identities = 8/47 (17%), Positives = 21/47 (44%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
+ T++ K FA L + ++ +D+ PK+ + + + +
Sbjct: 157 GNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHL 203
Score = 40.9 bits (96), Expect = 6e-04
Identities = 8/55 (14%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 350 KRWTNRSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
K++T R+ ++ + ++ L + +N + +P F L++
Sbjct: 252 KKFTFRNVKITDESLFQVMK-LLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQK 305
Score = 37.4 bits (87), Expect = 0.007
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
L +N + + + F+ L L L +S N
Sbjct: 83 LTSNGINTIEEDSFSSLGSLEHLDLSYN 110
Score = 35.9 bits (83), Expect = 0.021
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
L+NN +TY+ + L+ L ++ N
Sbjct: 59 LSNNRITYISNSDLQRCVNLQALVLTSN 86
Score = 34.3 bits (79), Expect = 0.058
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQN 386
+N + +P F L++I L N
Sbjct: 283 EFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311
Score = 33.9 bits (78), Expect = 0.073
Identities = 3/29 (10%), Positives = 8/29 (27%)
Query: 4 TLNNNNLTYLPDGVFAELFRLRTLRISEN 32
L+ L + + L + +
Sbjct: 204 ILHMKQHILLLEIFVDVTSSVECLELRDT 232
Score = 32.4 bits (74), Expect = 0.24
Identities = 6/50 (12%), Positives = 12/50 (24%), Gaps = 5/50 (10%)
Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDI-----TELPPKAFANYKRL 402
L L + + L D+ +EL + +
Sbjct: 204 ILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKK 253
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 126 bits (316), Expect = 5e-33
Identities = 43/172 (25%), Positives = 58/172 (33%), Gaps = 7/172 (4%)
Query: 97 CPHPCRC-ADGIVDCREKGLNKVPILLPEAT--TELRLE-QNDITELPPKAFANYKRLRR 152
CP C + C G LP A TEL +E Q + L + LR
Sbjct: 1 CPDACCPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRN 60
Query: 153 IDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDC 212
+ + K+ + VA DAF L+ L L+ N L L L L+ L +S N C C
Sbjct: 61 LTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPLHCSC 119
Query: 213 HLSWLHRWLKRYPRLGLYTK--CFAPSHIKGQNILDIPEHEFKCSGSSMETR 262
L WL RW + K C + K +
Sbjct: 120 ALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMPNASCGVPTLKVQVPNASVD 171
Score = 62.8 bits (152), Expect = 4e-11
Identities = 21/111 (18%), Positives = 30/111 (27%), Gaps = 28/111 (25%)
Query: 295 CPHPCRC-ADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWT 353
CP C + C G LP A L YI N
Sbjct: 1 CPDACCPHGSSGLRCTRDGALDSLHHLPGAEN--------------LTELYIENQ----- 41
Query: 354 NRSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
+ L + LR + + ++ + + P AF RL R
Sbjct: 42 --------QHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84
Score = 51.3 bits (122), Expect = 2e-07
Identities = 19/86 (22%), Positives = 23/86 (26%), Gaps = 6/86 (6%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSH 64
L+ N L L L L+ L +S N C C L WL RW +
Sbjct: 87 LSFNALESLSWKTVQGL-SLQELVLSGNPLHCSCALRWLQRWEEEGLG-----GVPEQKL 140
Query: 65 IKGQNILDIPEHEFKCSGPVEKPTGE 90
C P K
Sbjct: 141 QCHGQGPLAHMPNASCGVPTLKVQVP 166
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid
recognition, receptor immunity, lipid binding,
glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO
MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Length = 606
Score = 127 bits (321), Expect = 3e-32
Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 2/116 (1%)
Query: 95 PSCPHPCRC--ADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRR 152
P +PC + C ++ L+KVP +P +T + L N + L +F+N+ L+
Sbjct: 1 PGSLNPCIEVVPNITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQW 60
Query: 153 IDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSF 208
+DLS+ +I + A+ GL L++L L N + G F+ L L L E
Sbjct: 61 LDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL 116
Score = 118 bits (299), Expect = 3e-29
Identities = 25/125 (20%), Positives = 48/125 (38%), Gaps = 5/125 (4%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
T L L + + ++ F RL+ +++S N + + + L SL++L + N +
Sbjct: 476 TFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET 535
Query: 187 LPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLK----RYPRLGLYTKCFAPSHIKGQ 242
+ L ++ NS C C +W+K + T C P +
Sbjct: 536 SKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQMT-CATPVEMNTS 594
Query: 243 NILDI 247
+LD
Sbjct: 595 LVLDF 599
Score = 85.9 bits (213), Expect = 2e-18
Identities = 33/230 (14%), Positives = 67/230 (29%), Gaps = 64/230 (27%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRW-LKRYPRLG-LYTKCFAP 62
+ L+ +PD + + + + +S N L L + + L L
Sbjct: 18 CMDQKLSKVPDDIPSS---TKNIDLSFN------PLKILKSYSFSNFSELQWLD------ 62
Query: 63 SHIKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILL 122
+ I I + + GL+ +
Sbjct: 63 --LSRCEIETIEDKAW----------------------------------HGLHHL---- 82
Query: 123 PEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNN 182
+ L L N I P +F+ L + + +++ + L +L L + +N
Sbjct: 83 ----SNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN 138
Query: 183 NLTYLP-DGVFAELFRLRTLRISENSF--ICDCHLSWLHRWLKRYPRLGL 229
+ F+ L L + +S N I L +L + L +
Sbjct: 139 FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDM 188
Score = 77.8 bits (192), Expect = 1e-15
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKV-AVDAFQGLKSLTSLTLNNNNLT 185
L L N + F + L+ +D + + +V AF L+ L L ++ N
Sbjct: 379 RHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK 437
Query: 186 YLPDGVFAELFRLRTLRISENSFI 209
DG+F L L TL+++ NSF
Sbjct: 438 IDFDGIFLGLTSLNTLKMAGNSFK 461
Score = 75.5 bits (186), Expect = 6e-15
Identities = 34/231 (14%), Positives = 63/231 (27%), Gaps = 30/231 (12%)
Query: 5 LNNNNLTYLP-DGVFAELFRLRTLRISENSF--ICDCHLSWLHRWLKRYPRLGLYT---K 58
+ +N + F+ L L + +S N I L +L + L +
Sbjct: 135 VAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID 194
Query: 59 CFAPSHIKGQNI--LDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLN 116
+G + L + + + C + H R G K
Sbjct: 195 FIQDQAFQGIKLHELTLRGNFNSSN-----IMKTCLQNLAGLHVHRLILGEF----KDER 245
Query: 117 KVPILLPEA--------TTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAF 168
+ I P E RL + F + + L+ I ++
Sbjct: 246 NLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDV 303
Query: 169 QGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHR 219
SL++ L P +L L++L ++ N L
Sbjct: 304 PKHFKWQSLSIIRCQLKQFP---TLDLPFLKSLTLTMNKGSISFKKVALPS 351
Score = 71.6 bits (176), Expect = 1e-13
Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 2/84 (2%)
Query: 127 TELRLEQNDITELPP-KAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLT 185
L + + + + AF + ++L +D+S F GL SL +L + N+
Sbjct: 402 QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFK 461
Query: 186 Y-LPDGVFAELFRLRTLRISENSF 208
VFA L L +S+
Sbjct: 462 DNTLSNVFANTTNLTFLDLSKCQL 485
Score = 70.4 bits (173), Expect = 2e-13
Identities = 21/113 (18%), Positives = 39/113 (34%), Gaps = 32/113 (28%)
Query: 293 PSCPHPCRC--ADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFK 350
P +PC + C ++ L+KVP +P +T +
Sbjct: 1 PGSLNPCIEVVPNITYQCMDQKLSKVPDDIPSSTKNI----------------------- 37
Query: 351 RWTNRSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLR 403
L N + L +F+N+ L+ + L + +I + KA+ L
Sbjct: 38 -------DLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLS 83
Score = 70.4 bits (173), Expect = 3e-13
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 6/88 (6%)
Query: 127 TELRLEQNDITELP-PKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLT----SLTLNN 181
+L + N I P F+N L +DLS N I + V+ Q L+ SL ++
Sbjct: 131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190
Query: 182 NNLTYLPDGVFAELFRLRTLRISENSFI 209
N + ++ D F + +L L + N
Sbjct: 191 NPIDFIQDQAFQGI-KLHELTLRGNFNS 217
Score = 66.2 bits (162), Expect = 6e-12
Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 5/73 (6%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLK----RYPRLGLYTKCF 60
+ N + + L ++ NS C C +W+K + T C
Sbjct: 528 CSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQMT-CA 586
Query: 61 APSHIKGQNILDI 73
P + +LD
Sbjct: 587 TPVEMNTSLVLDF 599
Score = 64.7 bits (158), Expect = 2e-11
Identities = 34/223 (15%), Positives = 61/223 (27%), Gaps = 47/223 (21%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSH 64
++ N + ++ D F + +L L + N + + +
Sbjct: 188 MSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKT-------------------CLQN 227
Query: 65 IKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPE 124
+ G ++ + EFK +E C L +
Sbjct: 228 LAGLHVHRLILGEFKDERNLEIFE-----PSIMEGLCDVTIDEFR-----LTYTNDFSDD 277
Query: 125 ATT--------ELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTS 176
+ L I L + + + + + Q+ + L L S
Sbjct: 278 IVKFHCLANVSAMSLAGVSIKYLEDVPKHF--KWQSLSIIRCQLKQF---PTLDLPFLKS 332
Query: 177 LTLNNNNLTYLPDGVFAELFRLRTLRISEN--SFICDCHLSWL 217
LTL N + L L L +S N SF C S L
Sbjct: 333 LTLTMNKGSISFK--KVALPSLSYLDLSRNALSFSGCCSYSDL 373
Score = 63.1 bits (154), Expect = 6e-11
Identities = 32/208 (15%), Positives = 64/208 (30%), Gaps = 35/208 (16%)
Query: 6 NNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHR-WLKRYPRLGLYTKCFAPSH 64
N N + + L L R+ F + +L ++ + F ++
Sbjct: 213 GNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCD--VTIDEFRLTY 270
Query: 65 IKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPE 124
N +F C V + + + +
Sbjct: 271 T---NDFSDDIVKFHCLANVSA---------------------MSLAGVSIKYLEDVPKH 306
Query: 125 AT-TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNN 183
L + + + + P + L+ + L+ N+ S L SL+ L L+ N
Sbjct: 307 FKWQSLSIIRCQLKQFP---TLDLPFLKSLTLTMNKGSI--SFKKVALPSLSYLDLSRNA 361
Query: 184 LTYLPDGVFAELF--RLRTLRISENSFI 209
L++ +++L LR L +S N I
Sbjct: 362 LSFSGCCSYSDLGTNSLRHLDLSFNGAI 389
Score = 62.0 bits (151), Expect = 1e-10
Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 5/84 (5%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQ--GLKSLTSLTLNNNNL 184
L L N + L +DLS+N +S ++ G SL L L+ N
Sbjct: 331 KSLTLTMNKGSISFK--KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA 388
Query: 185 TYLPDGVFAELFRLRTLRISENSF 208
+ F L L+ L ++
Sbjct: 389 IIMS-ANFMGLEELQHLDFQHSTL 411
Score = 46.2 bits (110), Expect = 1e-05
Identities = 7/45 (15%), Positives = 17/45 (37%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLR 403
L + + ++ F RL+ + + N++ L + L
Sbjct: 480 LSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLS 524
Score = 43.5 bits (103), Expect = 9e-05
Identities = 7/46 (15%), Positives = 12/46 (26%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
+ N++ L + L + N I K L
Sbjct: 504 MSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAF 549
Score = 38.9 bits (91), Expect = 0.003
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFI 35
++ N DG+F L L TL+++ NSF
Sbjct: 431 ISYTNTKIDFDGIFLGLTSLNTLKMAGNSFK 461
Score = 37.3 bits (87), Expect = 0.008
Identities = 8/41 (19%), Positives = 14/41 (34%)
Query: 364 ITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
FAN L + L + + ++ F RL+
Sbjct: 461 KDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQL 501
Score = 36.9 bits (86), Expect = 0.011
Identities = 5/46 (10%), Positives = 15/46 (32%), Gaps = 1/46 (2%)
Query: 359 LEQNDITELPP-KAFANYKRLRRIRLEQNDITELPPKAFANYKRLR 403
+ + + + AF + ++L + + + F L
Sbjct: 406 FQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLN 451
Score = 36.5 bits (85), Expect = 0.014
Identities = 6/41 (14%), Positives = 9/41 (21%)
Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFAN 398
RL + F + + L I L
Sbjct: 267 RLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHF 307
Score = 36.2 bits (84), Expect = 0.019
Identities = 9/47 (19%), Positives = 15/47 (31%), Gaps = 1/47 (2%)
Query: 359 LEQNDITELP-PKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
+ N I P F+N L + L N I + + +
Sbjct: 135 VAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQ 181
Score = 33.9 bits (78), Expect = 0.096
Identities = 7/47 (14%), Positives = 13/47 (27%), Gaps = 1/47 (2%)
Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITE-LPPKAFANYKRLR 403
+ + F L +++ N + FAN L
Sbjct: 430 DISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLT 476
Score = 33.9 bits (78), Expect = 0.11
Identities = 8/46 (17%), Positives = 14/46 (30%), Gaps = 4/46 (8%)
Query: 359 LEQNDITELPPKAFANYKRLR----RIRLEQNDITELPPKAFANYK 400
L N I + + + + N I + +AF K
Sbjct: 160 LSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK 205
Score = 32.3 bits (74), Expect = 0.32
Identities = 7/46 (15%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPP-KAFANYKRLR 403
L N + F + L+ + + + + + AF + ++L
Sbjct: 383 LSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLL 427
Score = 31.5 bits (72), Expect = 0.56
Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 5 LNNNNLTYLPD-GVFAELFRLRTLRISENSF 34
++ L + + F L +L L IS +
Sbjct: 406 FQHSTLKRVTEFSAFLSLEKLLYLDISYTNT 436
Score = 30.8 bits (70), Expect = 0.92
Identities = 4/44 (9%), Positives = 9/44 (20%), Gaps = 2/44 (4%)
Query: 362 NDITELPPKAFANYKRLRR--IRLEQNDITELPPKAFANYKRLR 403
++ P + RL + F +
Sbjct: 245 RNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVS 288
Score = 30.4 bits (69), Expect = 1.3
Identities = 6/31 (19%), Positives = 7/31 (22%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDIT 389
N I K L L N +
Sbjct: 528 CSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558
Score = 29.6 bits (67), Expect = 1.8
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 5 LNNNNLTYLPDGVFAELF--RLRTLRISENSFI 35
L+ N L++ +++L LR L +S N I
Sbjct: 357 LSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI 389
Score = 29.6 bits (67), Expect = 2.0
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 6 NNNNLTYLPDGVFAELFRLRTLRISENSF 34
N+ VFA L L +S+
Sbjct: 457 GNSFKDNTLSNVFANTTNLTFLDLSKCQL 485
Score = 28.5 bits (64), Expect = 4.7
Identities = 5/40 (12%), Positives = 14/40 (35%), Gaps = 2/40 (5%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFAN 398
L N + L + L +N ++ ++++
Sbjct: 335 LTMNKGSISFK--KVALPSLSYLDLSRNALSFSGCCSYSD 372
Score = 28.1 bits (63), Expect = 6.9
Identities = 6/30 (20%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSF 34
L+ N + F L L+ L ++
Sbjct: 383 LSFNGAIIMS-ANFMGLEELQHLDFQHSTL 411
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex,
GPCR, graves' disea autoimmunity, receptor-autoantibody
complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB:
3g04_C*
Length = 239
Score = 119 bits (301), Expect = 9e-32
Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 4/113 (3%)
Query: 97 CPHPCRCA-DGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDL 155
PC C + K + ++P L P +T L+L + + +P AF+N + RI +
Sbjct: 4 SSPPCECHQEEDFRVTCKDIQRIPSL-PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYV 62
Query: 156 SKN-QISKVAVDAFQGLKSLTSLTL-NNNNLTYLPDGVFAELFRLRTLRISEN 206
S + + ++ +F L +T + + N NLTY+ EL L+ L I
Sbjct: 63 SIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT 115
Score = 75.8 bits (187), Expect = 5e-16
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 122 LPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQ-ISKVAVDAFQGLKS-LTSLTL 179
L T L+L N T + AF +L + L+KN+ ++ + DAF G+ S + L +
Sbjct: 154 LCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDV 212
Query: 180 NNNNLTYLPDGVFAELFRLRTL 201
+ ++T LP L L
Sbjct: 213 SQTSVTALPSKGLEHLKELIAR 234
Score = 65.8 bits (161), Expect = 2e-12
Identities = 19/112 (16%), Positives = 37/112 (33%), Gaps = 33/112 (29%)
Query: 295 CPHPCRCA-DGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWT 353
PC C + K + ++P L P +T L
Sbjct: 4 SSPPCECHQEEDFRVTCKDIQRIPSL-PPSTQTL-------------------------- 36
Query: 354 NRSRRLEQNDITELPPKAFANYKRLRRIRLEQND-ITELPPKAFANYKRLRR 404
+L + + +P AF+N + RI + + + +L +F N ++
Sbjct: 37 ----KLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTH 84
Score = 65.0 bits (159), Expect = 3e-12
Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 3/91 (3%)
Query: 120 ILLPEATTELRLEQND-ITELPPKAFAN-YKRLRRIDLSKNQISKVAVDAFQGLKSLTSL 177
+ + L + N +T +P AF + L N + V AF G K
Sbjct: 126 VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVY 185
Query: 178 TLNNNNLTYLPDGVFAELFR-LRTLRISENS 207
N LT + F ++ L +S+ S
Sbjct: 186 LNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS 216
Score = 46.9 bits (112), Expect = 4e-06
Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 5/58 (8%)
Query: 127 TELRLEQN-DITELPPKAFAN-YKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNN 182
+ L +N +T + AF Y +D+S+ ++ + + L L N
Sbjct: 182 DAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHL---KELIARNT 236
Score = 39.6 bits (93), Expect = 8e-04
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 362 NDITELPPKAFAN-YKRLRRIRLEQNDITELPPKAFANYKRLR 403
+T + AF Y + + Q +T LP K + K L
Sbjct: 190 KYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELI 232
Score = 38.8 bits (91), Expect = 0.002
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 6 NNNNLTYLPDGVFAELFRLRTLRISEN 32
N NLTY+ EL L+ L I
Sbjct: 89 NTRNLTYIDPDALKELPLLKFLGIFNT 115
Score = 38.4 bits (90), Expect = 0.002
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
Query: 343 SYISNN-FKRWTNRSR--RLEQNDITELPPKAFANYKRLRRIRLEQN-DITELPPKAFAN 398
+ I N F+ N + +L N T + AF +L + L +N +T + AF
Sbjct: 144 TSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGG 202
Score = 36.9 bits (86), Expect = 0.006
Identities = 6/31 (19%), Positives = 14/31 (45%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFI 35
L +L +P F+ L + + +S + +
Sbjct: 38 LIETHLRTIPSHAFSNLPNISRIYVSIDVTL 68
Score = 36.1 bits (84), Expect = 0.010
Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 362 NDITELPPKAFAN-YKRLRRIRLEQNDITELPPKAFAN 398
+T +P AF ++L N T + AF
Sbjct: 141 PYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG 178
Score = 36.1 bits (84), Expect = 0.013
Identities = 5/30 (16%), Positives = 10/30 (33%)
Query: 6 NNNNLTYLPDGVFAELFRLRTLRISENSFI 35
+ L L F L ++ + I +
Sbjct: 64 IDVTLQQLESHSFYNLSKVTHIEIRNTRNL 93
Score = 32.7 bits (75), Expect = 0.14
Identities = 7/32 (21%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFIC 36
L NN T + F +L + +++N ++
Sbjct: 163 LYNNGFTSVQGYAFNGT-KLDAVYLNKNKYLT 193
Score = 31.1 bits (71), Expect = 0.44
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTL 27
++ ++T LP L L
Sbjct: 212 VSQTSVTALPSKGLEHLKELIAR 234
Score = 30.7 bits (70), Expect = 0.68
Identities = 7/30 (23%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 5 LNNNNLTYLPDGVFAELFR-LRTLRISENS 33
N LT + F ++ L +S+ S
Sbjct: 187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQTS 216
Score = 30.4 bits (69), Expect = 0.89
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 5 LNNNNLTYLPDGVFAELFR-LRTLRISENSF 34
+N +T +P F L TL++ N F
Sbjct: 138 TDNPYMTSIPVNAFQGLCNETLTLKLYNNGF 168
Score = 29.6 bits (67), Expect = 1.5
Identities = 7/32 (21%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 5 LNNNNLTYLPDGVFAE-LFRLRTLRISENSFI 35
+ N L PD L I++N ++
Sbjct: 112 IFNTGLKMFPDLTKVYSTDIFFILEITDNPYM 143
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 121 bits (304), Expect = 4e-31
Identities = 45/254 (17%), Positives = 66/254 (25%), Gaps = 87/254 (34%)
Query: 91 CAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATT----------------------- 127
+ SCP C CA I+ C ++ L VP LP T
Sbjct: 6 GRSVVSCPANCLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTN 65
Query: 128 --------------------------ELRLEQNDITELPPKAFANYKRLRRIDLSKNQIS 161
L L N + L F++ + L + L N I
Sbjct: 66 LHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV 125
Query: 162 KVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRL----------------------- 198
V +AF+ + L L L+ N ++ P + + +L
Sbjct: 126 VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQK 185
Query: 199 ------RTLRISENSFICDCHLSWLHRWLKR-----YPRLGLYTKCFAPSHIKGQNILDI 247
L + N CDC L L + C + LD
Sbjct: 186 LPAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHNIFSLD- 244
Query: 248 PEHEFKCSGSSMET 261
F CS
Sbjct: 245 ---FFNCSEYKESA 255
Score = 78.7 bits (194), Expect = 2e-16
Identities = 32/122 (26%), Positives = 47/122 (38%), Gaps = 17/122 (13%)
Query: 289 CAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISN- 347
+ SCP C CA I+ C ++ L VP LP T L L ++ +S
Sbjct: 6 GRSVVSCPANCLCASNILSCSKQQLPNVPQSLPSYTALL-----------DLSHNNLSRL 54
Query: 348 ----NFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRL 402
R TN S L N + + +AF LR + L N + L F++ + L
Sbjct: 55 RAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQAL 114
Query: 403 RR 404
Sbjct: 115 EV 116
Score = 60.6 bits (147), Expect = 2e-10
Identities = 20/89 (22%), Positives = 26/89 (29%), Gaps = 11/89 (12%)
Query: 4 TLNNNNLTYLPDGVFAELFRL--RTLRISENSFICDCHLSWLHRWLKR-----YPRLGLY 56
L++N L LP +L L + N CDC L L +
Sbjct: 169 DLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQED 228
Query: 57 TKCFAPSHIKGQNILDIPEHEFKCSGPVE 85
C + LD F CS E
Sbjct: 229 LYCMHSKKLHNIFSLD----FFNCSEYKE 253
Score = 39.4 bits (92), Expect = 0.001
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 3/49 (6%)
Query: 359 LEQNDITELPPKAFANY---KRLRRIRLEQNDITELPPKAFANYKRLRR 404
L QN I+ P + + +L + L N + +LP +
Sbjct: 143 LSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVK 191
Score = 39.4 bits (92), Expect = 0.001
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
L++N+L L + +F++L L L + N
Sbjct: 95 LSSNHLHTLDEFLFSDLQALEVLLLYNN 122
Score = 39.1 bits (91), Expect = 0.002
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
L++N+L ++ F + LR L +S N
Sbjct: 71 LSHNHLNFISSEAFVPVPNLRYLDLSSN 98
Score = 37.5 bits (87), Expect = 0.006
Identities = 9/41 (21%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHR 45
L NN++ + F ++ +L+ L +S+N +S
Sbjct: 119 LYNNHIVVVDRNAFEDMAQLQKLYLSQN------QISRFPV 153
Score = 31.7 bits (72), Expect = 0.39
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 5 LNNNNLTYL-PDGVFAELFRLRTLRISEN 32
L++NNL+ L + L L +L +S N
Sbjct: 46 LSHNNLSRLRAEWTPTRLTNLHSLLLSHN 74
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex,
leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A
{Homo sapiens} PDB: 1xwd_C*
Length = 350
Score = 120 bits (302), Expect = 6e-31
Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 3/113 (2%)
Query: 97 CPHP-CRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDL 155
C H C C++ + C+E + ++P LP ELR + + AF+ + L +I++
Sbjct: 2 CHHRICHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEI 61
Query: 156 SKNQI-SKVAVDAFQGLKSLTSLTL-NNNNLTYLPDGVFAELFRLRTLRISEN 206
S+N + + D F L L + + NNL Y+ F L L+ L IS
Sbjct: 62 SQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT 114
Score = 84.9 bits (210), Expect = 2e-18
Identities = 46/303 (15%), Positives = 82/303 (27%), Gaps = 77/303 (25%)
Query: 4 TLNNNNLTYLPDGVFAELFRLRTLRISENSFICD------CHLSWLHRWLKRYPRLGLYT 57
++N + +LPD + L I +N I LS+ L
Sbjct: 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVIL---------- 159
Query: 58 KCFAPSHIKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNK 117
+ I +I F G
Sbjct: 160 ------WLNKNGIQEIHNSAF----------------------------------NGTQL 179
Query: 118 VPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSL 177
+ L + N++ ELP F +D+S+ +I + + LK L
Sbjct: 180 DELNL--------SDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLR-- 229
Query: 178 TLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPS 237
+ NL LP +L L ++ C +W + + +P C
Sbjct: 230 ARSTYNLKKLP--TLEKLVALMEASLT-YPSHCCAFANWRRQISELHPI------CNKSI 280
Query: 238 HIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPH 297
+ + + + S + + S R T E C+ +P +
Sbjct: 281 LRQEVDYMTQARGQR--SSLAEDNESSYSRGFDMTYTEFDYDLCNEVVDVTCSPKPDAFN 338
Query: 298 PCR 300
PC
Sbjct: 339 PCE 341
Score = 69.1 bits (169), Expect = 3e-13
Identities = 23/112 (20%), Positives = 40/112 (35%), Gaps = 32/112 (28%)
Query: 295 CPHP-CRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWT 353
C H C C++ + C+E + ++P LP EL
Sbjct: 2 CHHRICHCSNRVFLCQESKVTEIPSDLPRNAIEL-------------------------- 35
Query: 354 NRSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITE-LPPKAFANYKRLRR 404
R + + AF+ + L +I + QND+ E + F+N +L
Sbjct: 36 ----RFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHE 83
Score = 41.7 bits (98), Expect = 3e-04
Identities = 12/46 (26%), Positives = 19/46 (41%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
+ N++ ELP F + + + I LP N K+LR
Sbjct: 185 SDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRA 230
Score = 39.8 bits (93), Expect = 0.001
Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
Query: 3 RTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPR 52
R + NL LP +L L ++ C +W + + +P
Sbjct: 229 RARSTYNLKKLP--TLEKLVALMEASLT-YPSHCCAFANWRRQISELHPI 275
Score = 39.0 bits (91), Expect = 0.002
Identities = 11/46 (23%), Positives = 17/46 (36%)
Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLR 403
L +N I E+ AF + + N++ ELP F
Sbjct: 160 WLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPV 205
Score = 37.9 bits (88), Expect = 0.005
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
NNL Y+ F L L+ L IS
Sbjct: 87 EKANNLLYINPEAFQNLPNLQYLLISNT 114
Score = 34.4 bits (79), Expect = 0.052
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
L + G F+ L + IS+N
Sbjct: 37 FVLTKLRVIQKGAFSGFGDLEKIEISQN 64
Score = 30.6 bits (69), Expect = 0.84
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 6 NNNNLTYLPDGVFAELFRLRTLRISEN 32
N+ L + VF+ L +L +RI +
Sbjct: 63 QNDVLEVIEADVFSNLPKLHEIRIEKA 89
Score = 30.6 bits (69), Expect = 0.89
Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 6/64 (9%)
Query: 343 SYISNN-FKRWTNRSR-RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYK 400
+ N+ F + + + I LP N K+LR ++ +LP
Sbjct: 191 EELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLR--ARSTYNLKKLPT--LEKLV 246
Query: 401 RLRR 404
L
Sbjct: 247 ALME 250
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid,
MD-2, LPS, glycoprotein response, inflammatory response,
innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens}
PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Length = 276
Score = 118 bits (297), Expect = 9e-31
Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 2/109 (1%)
Query: 100 PCRCADG--IVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSK 157
PC C E K+P LP +T L L N + L +F ++ L+ +DLS+
Sbjct: 2 PCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSR 61
Query: 158 NQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISEN 206
+I + A+Q L L++L L N + L G F+ L L+ L E
Sbjct: 62 CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110
Score = 93.5 bits (233), Expect = 8e-22
Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 6/104 (5%)
Query: 127 TELRLEQNDITELPPKAFANYKRLR----RIDLSKNQISKVAVDAFQGLKSLTSLTLNNN 182
L L N I + ++ +DLS N ++ + AF+ ++ L L L+ N
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTN 210
Query: 183 NLTYLPDGVFAELFRLRTLRISENSFICDC-HLSWLHRWLKRYP 225
L +PDG+F L L+ + + N + C C + +L RWL +
Sbjct: 211 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNS 254
Score = 63.1 bits (154), Expect = 2e-11
Identities = 19/109 (17%), Positives = 32/109 (29%), Gaps = 32/109 (29%)
Query: 298 PCRCADG--IVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWTNR 355
PC C E K+P LP +T L
Sbjct: 2 PCVEVVPNITYQCMELNFYKIPDNLPFSTKNL---------------------------- 33
Query: 356 SRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
L N + L +F ++ L+ + L + +I + A+ + L
Sbjct: 34 --DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLST 80
Score = 53.8 bits (130), Expect = 2e-08
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 4 TLNNNNLTYLPDGVFAELFRLRTLRISENSFICDC-HLSWLHRWLKRYP 51
L+ N L +PDG+F L L+ + + N + C C + +L RWL +
Sbjct: 206 ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNS 254
Score = 39.6 bits (93), Expect = 0.001
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 351 RWTNRSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
N S L N + + P AF RL+ + L+ N + +P F L++
Sbjct: 176 PLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQK 228
Score = 39.6 bits (93), Expect = 0.001
Identities = 9/49 (18%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Query: 358 RLEQNDITELP-PKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
+ N I P+ F+N L + L N I + ++ +
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178
Score = 38.4 bits (90), Expect = 0.002
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
L+ + + DG + L L TL ++ N
Sbjct: 59 LSRCEIQTIEDGAYQSLSHLSTLILTGN 86
Score = 36.5 bits (85), Expect = 0.010
Identities = 8/44 (18%), Positives = 14/44 (31%), Gaps = 4/44 (9%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLE----QNDITELPPKAFAN 398
L N I + ++ + L N + + P AF
Sbjct: 156 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199
Score = 35.7 bits (83), Expect = 0.020
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
NL L + L L+ L ++ N
Sbjct: 107 AVETNLASLENFPIGHLKTLKELNVAHN 134
Score = 34.9 bits (81), Expect = 0.031
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
L N + L G F+ L L+ L E
Sbjct: 83 LTGNPIQSLALGAFSGLSSLQKLVAVET 110
Score = 31.5 bits (72), Expect = 0.45
Identities = 5/27 (18%), Positives = 12/27 (44%)
Query: 4 TLNNNNLTYLPDGVFAELFRLRTLRIS 30
L++N + + L ++ L +S
Sbjct: 155 DLSSNKIQSIYCTDLRVLHQMPLLNLS 181
Score = 30.3 bits (69), Expect = 0.99
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQN 386
L+ N + +P F L++I L N
Sbjct: 207 LDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 120 bits (304), Expect = 6e-30
Identities = 28/116 (24%), Positives = 47/116 (40%), Gaps = 2/116 (1%)
Query: 95 PSCPHPCRC--ADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRR 152
S C + +C GLN++P LP +T L N + + F+ L
Sbjct: 2 TSSDQKCIEKEVNKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTF 61
Query: 153 IDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSF 208
+DL++ QI + D FQ L +L L N L ++ + + L+ L +
Sbjct: 62 LDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGI 117
Score = 102 bits (255), Expect = 1e-23
Identities = 30/151 (19%), Positives = 50/151 (33%), Gaps = 29/151 (19%)
Query: 127 TELRLEQNDIT---ELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNN 183
L L+ N + RL + LS +S + AF LK + + L++N
Sbjct: 452 QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR 511
Query: 184 LTYLP-----------------------DGVFAELFRLRTLRISENSFICDCHLSWLHRW 220
LT + L + RT+ + +N C C + W
Sbjct: 512 LTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEW 571
Query: 221 LKR-YPRLGLY--TKCFAPSHIKGQNILDIP 248
K +L T C P ++G + D+
Sbjct: 572 YKENMQKLEDTEDTLCENPPLLRGVRLSDVT 602
Score = 94.7 bits (236), Expect = 3e-21
Identities = 29/209 (13%), Positives = 61/209 (29%), Gaps = 34/209 (16%)
Query: 5 LNNNNLTYLPDGVFAELFRLR--TLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAP 62
NN + YL + L + +L ++ N ++ + G
Sbjct: 160 FQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIF 219
Query: 63 SHIKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILL 122
+K I + F+ D ++ ++
Sbjct: 220 KGLKNSTIQSLWLGTFE-----------------------------DMDDEDISPAVFEG 250
Query: 123 PEAT--TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLN 180
+ L+++ + F + L+ +DL+ +S++ GL +L L L+
Sbjct: 251 LCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSEL-PSGLVGLSTLKKLVLS 309
Query: 181 NNNLTYLPDGVFAELFRLRTLRISENSFI 209
N L + L L I N+
Sbjct: 310 ANKFENLCQISASNFPSLTHLSIKGNTKR 338
Score = 87.4 bits (217), Expect = 8e-19
Identities = 23/128 (17%), Positives = 40/128 (31%), Gaps = 2/128 (1%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
L Q I+ + N K L + L N IS + + + L L NN + Y
Sbjct: 108 KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY 167
Query: 187 LPDGVFAELFRLR--TLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNI 244
L + L + +L ++ N ++ + G +K I
Sbjct: 168 LSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTI 227
Query: 245 LDIPEHEF 252
+ F
Sbjct: 228 QSLWLGTF 235
Score = 77.0 bits (190), Expect = 2e-15
Identities = 23/85 (27%), Positives = 33/85 (38%), Gaps = 3/85 (3%)
Query: 127 TELRLEQNDI-TELPPKAFANYKRLRRIDLSKNQISKVAV--DAFQGLKSLTSLTLNNNN 183
T L ++ N EL N + LR +DLS + I + L L SL L+ N
Sbjct: 328 THLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE 387
Query: 184 LTYLPDGVFAELFRLRTLRISENSF 208
L F E +L L ++
Sbjct: 388 PLSLKTEAFKECPQLELLDLAFTRL 412
Score = 75.8 bits (187), Expect = 5e-15
Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 3/85 (3%)
Query: 127 TELRLEQNDITELP--PKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNL 184
EL L +DI N L+ ++LS N+ + +AF+ L L L L
Sbjct: 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL 412
Query: 185 TYL-PDGVFAELFRLRTLRISENSF 208
F L L+ L +S +
Sbjct: 413 KVKDAQSPFQNLHLLKVLNLSHSLL 437
Score = 73.9 bits (182), Expect = 2e-14
Identities = 23/97 (23%), Positives = 36/97 (37%), Gaps = 5/97 (5%)
Query: 127 TELRLEQNDITELPPKAFANYKR--LRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNL 184
E D ++ P F + I+L K+ ++ + F L L L +L
Sbjct: 231 WLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL 290
Query: 185 TYLPDGVFAELFRLRTLRISENSF--ICDCHLSWLHR 219
+ LP G L L+ L +S N F +C S
Sbjct: 291 SELPSG-LVGLSTLKKLVLSANKFENLCQISASNFPS 326
Score = 72.0 bits (177), Expect = 8e-14
Identities = 19/86 (22%), Positives = 30/86 (34%), Gaps = 4/86 (4%)
Query: 127 TELRLEQNDITELPPK-AFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLT 185
L L + + F N L+ ++LS + + + F GL +L L L N+
Sbjct: 403 ELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFP 462
Query: 186 YL---PDGVFAELFRLRTLRISENSF 208
L RL L +S
Sbjct: 463 KGNIQKTNSLQTLGRLEILVLSFCDL 488
Score = 69.3 bits (170), Expect = 6e-13
Identities = 16/86 (18%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQIS-KVAVDAFQGLKSLTSLTLNNNNLT 185
+L L N L + +N+ L + + N ++ + L++L L L+++++
Sbjct: 304 KKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIE 363
Query: 186 YLP--DGVFAELFRLRTLRISENSFI 209
+ L L++L +S N +
Sbjct: 364 TSDCCNLQLRNLSHLQSLNLSYNEPL 389
Score = 68.9 bits (169), Expect = 7e-13
Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKR-YPRLGLY--TKCFA 61
L +N+++ + + L + RT+ + +N C C + W K +L T C
Sbjct: 530 LASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLEDTEDTLCEN 589
Query: 62 PSHIKGQNILDIP 74
P ++G + D+
Sbjct: 590 PPLLRGVRLSDVT 602
Score = 68.1 bits (167), Expect = 1e-12
Identities = 26/124 (20%), Positives = 39/124 (31%), Gaps = 28/124 (22%)
Query: 293 PSCPHPCRC--ADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNN-- 348
S C + +C GLN++P LP +T L S N
Sbjct: 2 TSSDQKCIEKEVNKTYNCENLGLNEIPGTLPNSTECL----------------EFSFNVL 45
Query: 349 -------FKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYK 400
F R N L + I + F + RL + L N + + A + K
Sbjct: 46 PTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPK 105
Query: 401 RLRR 404
L+
Sbjct: 106 ALKH 109
Score = 46.2 bits (110), Expect = 1e-05
Identities = 10/45 (22%), Positives = 21/45 (46%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLR 403
L D++ + AF + K + + L N +T +A ++ K +
Sbjct: 483 LSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY 527
Score = 41.9 bits (99), Expect = 3e-04
Identities = 8/46 (17%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLR 403
L+++ + F + L+ + L ++ELP L+
Sbjct: 260 NLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPS-GLVGLSTLK 304
Score = 41.2 bits (97), Expect = 5e-04
Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPK-AFANYKRLRR 404
L N+ L +AF +L + L + + F N L+
Sbjct: 382 NLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKV 429
Score = 41.2 bits (97), Expect = 5e-04
Identities = 7/45 (15%), Positives = 19/45 (42%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLR 403
L N I+ + ++L+ + + N I L + ++ ++
Sbjct: 136 LGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQAT 180
Score = 40.0 bits (94), Expect = 0.001
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
Query: 359 LEQNDITELP--PKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
L +DI N L+ + L N+ L +AF +L
Sbjct: 357 LSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLEL 404
Score = 39.2 bits (92), Expect = 0.002
Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
L ++ELP L+++ L N L + +N+ L
Sbjct: 284 DLTATHLSELPS-GLVGLSTLKKLVLSANKFENLCQISASNFPSLTH 329
Score = 39.2 bits (92), Expect = 0.002
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDI-TELPPKAFANYKRLR 403
L N L + +N+ L + ++ N EL N + LR
Sbjct: 308 LSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR 353
Score = 38.8 bits (91), Expect = 0.003
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSF 34
L+++ L + +F L L+ L + N F
Sbjct: 432 LSHSLLDISSEQLFDGLPALQHLNLQGNHF 461
Score = 38.1 bits (89), Expect = 0.004
Identities = 9/49 (18%), Positives = 17/49 (34%), Gaps = 3/49 (6%)
Query: 359 LEQNDIT---ELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
L+ N + RL + L D++ + AF + K +
Sbjct: 456 LQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNH 504
Score = 37.7 bits (88), Expect = 0.006
Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
L N +T +A ++ K + + L N I+ + P + R
Sbjct: 507 LSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRT 551
Score = 37.3 bits (87), Expect = 0.008
Identities = 7/46 (15%), Positives = 15/46 (32%), Gaps = 1/46 (2%)
Query: 359 LEQNDITELPPK-AFANYKRLRRIRLEQNDITELPPKAFANYKRLR 403
L + + F N L+ + L + + + F L+
Sbjct: 407 LAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQ 452
Score = 36.9 bits (86), Expect = 0.010
Identities = 8/51 (15%), Positives = 17/51 (33%), Gaps = 2/51 (3%)
Query: 355 RSRRLEQNDITELPPKAFANYKR--LRRIRLEQNDITELPPKAFANYKRLR 403
E D ++ P F + I L+++ + F + L+
Sbjct: 231 WLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQ 281
Score = 36.5 bits (85), Expect = 0.015
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSF 34
L + ++ + F RL TL ++ N
Sbjct: 64 LTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93
Score = 35.4 bits (82), Expect = 0.035
Identities = 5/30 (16%), Positives = 11/30 (36%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSF 34
L N L ++ + + L+ L +
Sbjct: 88 LTANPLIFMAETALSGPKALKHLFFIQTGI 117
Score = 35.4 bits (82), Expect = 0.035
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSF 34
L+ N L F E +L L ++
Sbjct: 383 LSYNEPLSLKTEAFKECPQLELLDLAFTRL 412
Score = 34.2 bits (79), Expect = 0.072
Identities = 3/30 (10%), Positives = 8/30 (26%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSF 34
++ + L +L + N
Sbjct: 112 FIQTGISSIDFIPLHNQKTLESLYLGSNHI 141
Score = 34.2 bits (79), Expect = 0.072
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 359 LEQNDITELPPKAFANYKRLRRI--RLEQNDITELPPKAFAN 398
+ N I L + ++ ++ + L NDI + P AF +
Sbjct: 160 FQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS 201
Score = 33.1 bits (76), Expect = 0.20
Identities = 7/49 (14%), Positives = 14/49 (28%), Gaps = 3/49 (6%)
Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDIT---ELPPKAFANYKRLR 403
L + + + F L+ + L+ N + RL
Sbjct: 431 NLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLE 479
Score = 32.7 bits (75), Expect = 0.25
Identities = 6/30 (20%), Positives = 12/30 (40%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSF 34
+ N L + + F+ L L L ++
Sbjct: 40 FSFNVLPTIQNTTFSRLINLTFLDLTRCQI 69
Score = 32.3 bits (74), Expect = 0.31
Identities = 7/31 (22%), Positives = 10/31 (32%), Gaps = 1/31 (3%)
Query: 5 LNNNNLTYL-PDGVFAELFRLRTLRISENSF 34
L L F L L+ L +S +
Sbjct: 407 LAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL 437
Score = 31.5 bits (72), Expect = 0.52
Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 3/50 (6%)
Query: 358 RLEQNDI-TELPPKAFANYKRLRRIRLEQNDITELP--PKAFANYKRLRR 404
++ N EL N + LR + L +DI N L+
Sbjct: 331 SIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQS 380
Score = 31.5 bits (72), Expect = 0.60
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDIT 389
L N I+ + P + R I L QN +
Sbjct: 530 LASNHISIILPSLLPILSQQRTINLRQNPLD 560
Score = 29.2 bits (66), Expect = 2.6
Identities = 8/29 (27%), Positives = 10/29 (34%)
Query: 6 NNNNLTYLPDGVFAELFRLRTLRISENSF 34
N L G L LR L +S +
Sbjct: 334 GNTKRLELGTGCLENLENLRELDLSHDDI 362
Score = 28.1 bits (63), Expect = 5.9
Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFAN 398
L NDI + P AF + + + + K N
Sbjct: 185 NLNGNDIAGIEPGAFDS-AVFQSLNFGGTQNLLVIFKGLKN 224
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A
{Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A*
2z7x_A*
Length = 549
Score = 119 bits (300), Expect = 1e-29
Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 5/113 (4%)
Query: 96 SCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDL 155
SC + D R + +P L A L L N IT + L+ + L
Sbjct: 3 SCDASG-----VCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLIL 57
Query: 156 SKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSF 208
++I+ + DAF L SL L L++N+L+ L F L L+ L + N +
Sbjct: 58 KSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPY 110
Score = 102 bits (257), Expect = 5e-24
Identities = 39/281 (13%), Positives = 78/281 (27%), Gaps = 48/281 (17%)
Query: 127 TELRLEQNDITELP-PKAFANYKRLRRIDLS-KNQISKVAVDAFQGLKSLTSLTLNNNNL 184
L L N L F N L+ + + S++ F GL SL L + +L
Sbjct: 101 KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160
Query: 185 TYLPDGVFAELFRLRTLRISEN--SFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQ 242
+ + L + + +F+ + L ++
Sbjct: 161 RNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSS--------------VRYLELRDT 206
Query: 243 NILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCA 302
N+ S + +R TD + + E
Sbjct: 207 NLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL-----------SE 255
Query: 303 DGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWTNRSRRLEQN 362
DC GL + +EL + ++ T R + Q
Sbjct: 256 VEFDDCTLNGLGDFNPSESDVVSELGKVETV-------------------TIRRLHIPQF 296
Query: 363 DITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLR 403
+ ++ ++++RI +E + + +P + K L
Sbjct: 297 YLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLE 337
Score = 99.0 bits (247), Expect = 1e-22
Identities = 38/237 (16%), Positives = 76/237 (32%), Gaps = 68/237 (28%)
Query: 5 LNNNNLTYLPD--GVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAP 62
L+ N+L + + L L +L IS N + C P
Sbjct: 368 LSQNHLRSMQKTGEILLTLKNLTSLDISRN------TFHPMPD------------SCQWP 409
Query: 63 SHIKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILL 122
++ ++ G+ V +
Sbjct: 410 EKMR----------------------------------------FLNLSSTGIRVVKTCI 429
Query: 123 PEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNN 182
P+ L + N++ RL+ + +S+N++ + + L + ++ N
Sbjct: 430 PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLKTLPDASL--FPVLLVMKISRN 483
Query: 183 NLTYLPDGVFAELFRLRTLRISENSFICDC-HLSWLHRWLKRYPRLGLYT-KCFAPS 237
L +PDG+F L L+ + + N + C C + +L RWL + + + KC
Sbjct: 484 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGSG 540
Score = 97.5 bits (243), Expect = 3e-22
Identities = 31/221 (14%), Positives = 67/221 (30%), Gaps = 17/221 (7%)
Query: 4 TLNNNNLTYLPDGVFAELFRLRTLRISEN--SFICDCHLSWLHRWLKRYPRLGLYTKCFA 61
+ +L + + L + + +F+ + L R +
Sbjct: 154 EIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQF 213
Query: 62 PSHIKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPIL 121
+ + + F+ S ++ E + DC GL
Sbjct: 214 SPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE-FDDCTLNGLGDFNPS 272
Query: 122 LPEATTE-----------LRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQG 170
+ +E L + Q + ++ ++++RI + +++ V Q
Sbjct: 273 ESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQH 332
Query: 171 LKSLTSLTLNNNNLTYLP---DGVFAELFRLRTLRISENSF 208
LKSL L L+ N + L+TL +S+N
Sbjct: 333 LKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHL 373
Score = 69.0 bits (169), Expect = 6e-13
Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 6/87 (6%)
Query: 127 TELRLEQNDITELPPK---AFANYKRLRRIDLSKNQISKV--AVDAFQGLKSLTSLTLNN 181
L L +N + E K + L+ + LS+N + + + LK+LTSL ++
Sbjct: 337 EFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISR 396
Query: 182 NNLTYLPDGVFAELFRLRTLRISENSF 208
N +PD ++R L +S
Sbjct: 397 NTFHPMPDS-CQWPEKMRFLNLSSTGI 422
Score = 65.5 bits (160), Expect = 9e-12
Identities = 21/121 (17%), Positives = 35/121 (28%), Gaps = 31/121 (25%)
Query: 294 SCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNN----- 348
SC + D R + +P L A L +S N
Sbjct: 3 SCDASG-----VCDGRSRSFTSIPSGLTAAMKSL----------------DLSFNKITYI 41
Query: 349 ----FKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLR 403
+ N + L+ + I + AF + L + L N ++ L F L+
Sbjct: 42 GHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLK 101
Query: 404 R 404
Sbjct: 102 Y 102
Score = 54.3 bits (131), Expect = 4e-08
Identities = 35/231 (15%), Positives = 65/231 (28%), Gaps = 63/231 (27%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFICD---------CHLSWLHRWLKRYPRLG- 54
L++N+L+ L F L L+ L + N + +L L +
Sbjct: 81 LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL--RIGNVETFSE 138
Query: 55 LYTKCFAPS------HIKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIV 108
+ FA IK ++ +
Sbjct: 139 IRRIDFAGLTSLNELEIKALSLRNYQSQSL------------------------------ 168
Query: 109 DCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAF 168
K + + L L ++ L +R ++L +++
Sbjct: 169 ----KSIRDIHHL--------TLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPL 216
Query: 169 QGLKSLTSLTLNNNNLTYLPDGVFAELFRL--RTLRISENSFICDCHLSWL 217
+ + + + L D F EL +L L +SE F DC L+ L
Sbjct: 217 PVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFD-DCTLNGL 266
Score = 38.2 bits (89), Expect = 0.004
Identities = 8/46 (17%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
+ +N + LP + L +++ +N + +P F L++
Sbjct: 458 ISRNKLKTLPDASLFP--VLLVMKISRNQLKSVPDGIFDRLTSLQK 501
Score = 36.2 bits (84), Expect = 0.016
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENS 33
L ++ + + F L L L +S+N
Sbjct: 57 LKSSRINTIEGDAFYSLGSLEHLDLSDNH 85
Score = 34.3 bits (79), Expect = 0.069
Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 2/50 (4%)
Query: 358 RLEQNDITELP-PKAFANYKRLRRIRL-EQNDITELPPKAFANYKRLRRM 405
L N L F N L+ +R+ +E+ FA L +
Sbjct: 104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNEL 153
Score = 33.9 bits (78), Expect = 0.092
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
L+ N +TY+ G L+ L + +
Sbjct: 33 LSFNKITYIGHGDLRACANLQVLILKSS 60
Score = 33.5 bits (77), Expect = 0.14
Identities = 5/51 (9%), Positives = 18/51 (35%)
Query: 354 NRSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
N ++ + +RR+ + Q + ++ ++++R
Sbjct: 264 NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKR 314
Score = 32.8 bits (75), Expect = 0.20
Identities = 8/48 (16%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 358 RLEQNDITELP--PKAFANYKRLRRIRLEQNDITELPPKAFANYKRLR 403
L QN + + + K L + + +N +P + +++R
Sbjct: 367 VLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPD-SCQWPEKMR 413
Score = 31.6 bits (72), Expect = 0.45
Identities = 6/44 (13%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRL 402
+ +N +P + +++R + L I + + L
Sbjct: 394 ISRNTFHPMPD-SCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVL 436
Score = 30.8 bits (70), Expect = 0.82
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQN 386
+ +N + +P F L++I L N
Sbjct: 480 ISRNQLKSVPDGIFDRLTSLQKIWLHTN 507
Score = 30.1 bits (68), Expect = 1.5
Identities = 6/38 (15%), Positives = 15/38 (39%), Gaps = 4/38 (10%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAF 396
+ N++ RL+ + + +N + LP +
Sbjct: 438 VSNNNLDSFS----LFLPRLQELYISRNKLKTLPDASL 471
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS,
immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Length = 570
Score = 119 bits (301), Expect = 1e-29
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 2/111 (1%)
Query: 100 PCRC--ADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSK 157
PC + C E K+P LP +T L L N + L +F ++ L+ +DLS+
Sbjct: 2 PCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSR 61
Query: 158 NQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSF 208
+I + A+Q L L++L L N + L G F+ L L+ L E +
Sbjct: 62 CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112
Score = 103 bits (259), Expect = 4e-24
Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Query: 127 TELRLEQNDITE-LPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLT 185
L++ N E P F + L +DLS+ Q+ +++ AF L SL L + +N L
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK 507
Query: 186 YLPDGVFAELFRLRTLRISENSFICDC-HLSWLHRWLK 222
+PDG+F L L+ + + N + C C + +L RWL
Sbjct: 508 SVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN 545
Score = 81.3 bits (201), Expect = 7e-17
Identities = 39/230 (16%), Positives = 67/230 (29%), Gaps = 64/230 (27%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRW-LKRYPRL-GLYTKCFAP 62
N +PD + + L +S N L L + +P L L
Sbjct: 14 CMELNFYKIPDNLPFS---TKNLDLSFN------PLRHLGSYSFFSFPELQVLD------ 58
Query: 63 SHIKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILL 122
+ I I + + + L+ +
Sbjct: 59 --LSRCEIQTIEDGAY----------------------------------QSLSHL---- 78
Query: 123 PEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNN 182
+ L L N I L AF+ L+++ + ++ + LK+L L + +N
Sbjct: 79 ----STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134
Query: 183 NLTYLPDG-VFAELFRLRTLRISENSF--ICDCHLSWLHRWLKRYPRLGL 229
+ F+ L L L +S N I L LH+ L L
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184
Score = 79.8 bits (197), Expect = 3e-16
Identities = 18/83 (21%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKV-AVDAFQGLKSLTSLTLNNNNLT 185
L L N + + F ++L +D + + ++ F L++L L +++ +
Sbjct: 376 KYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434
Query: 186 YLPDGVFAELFRLRTLRISENSF 208
+G+F L L L+++ NSF
Sbjct: 435 VAFNGIFNGLSSLEVLKMAGNSF 457
Score = 76.7 bits (189), Expect = 2e-15
Identities = 44/292 (15%), Positives = 88/292 (30%), Gaps = 32/292 (10%)
Query: 127 TELRLEQNDITELP-PKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLT----SLTLNN 181
EL + N I P+ F+N L +DLS N+I + + L + SL L+
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186
Query: 182 NNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKG 241
N + ++ G F E+ RL L + N + + + L L F
Sbjct: 187 NPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQG-LAGLEVHRLVLGEFRNEG--- 241
Query: 242 QNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPS----CPH 297
N+ + + + ++ + D + + +
Sbjct: 242 -NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF 300
Query: 298 PCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWTNRSR 357
++ + P L ++ LT + N F S
Sbjct: 301 SYNFGWQHLELVNCKFGQFPTLKLKSLKRLT-----------FTSNKGGNAFSEVDLPSL 349
Query: 358 R---LEQNDIT--ELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
L +N ++ ++ L+ + L N + + F ++L
Sbjct: 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEH 400
Score = 76.3 bits (188), Expect = 3e-15
Identities = 37/230 (16%), Positives = 69/230 (30%), Gaps = 31/230 (13%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFICD---------CHLSWLHRWLKRYPRLG- 54
L+ N + ++ G F E+ RL L + N + L L + G
Sbjct: 184 LSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN 242
Query: 55 --------------LYTKCFAPSHIKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHP 100
L + F +++ + DI + + E
Sbjct: 243 LEKFDKSALEGLCNLTIEEFRLAYLD-YYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS 301
Query: 101 CRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQI 160
++ + P L ++ L N + + L +DLS+N +
Sbjct: 302 YNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGL 359
Query: 161 SKVAV--DAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSF 208
S + G SL L L+ N + + F L +L L ++
Sbjct: 360 SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNL 408
Score = 74.8 bits (184), Expect = 1e-14
Identities = 20/103 (19%), Positives = 38/103 (36%), Gaps = 4/103 (3%)
Query: 108 VDCREKGLNKVPILLPEAT--TELRLEQNDITELPP-KAFANYKRLRRIDLSKNQISKVA 164
+D G+ + L + +++ ++ F + + L +D+S
Sbjct: 378 LDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 437
Query: 165 VDAFQGLKSLTSLTLNNNNLTY-LPDGVFAELFRLRTLRISEN 206
F GL SL L + N+ +F EL L L +S+
Sbjct: 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480
Score = 63.6 bits (155), Expect = 4e-11
Identities = 24/119 (20%), Positives = 39/119 (32%), Gaps = 28/119 (23%)
Query: 298 PCRC--ADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNN------- 348
PC + C E K+P LP +T L +S N
Sbjct: 2 PCVEVVPNITYQCMELNFYKIPDNLPFSTKNL----------------DLSFNPLRHLGS 45
Query: 349 --FKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
F + + L + +I + A+ + L + L N I L AF+ L++
Sbjct: 46 YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104
Score = 58.6 bits (142), Expect = 1e-09
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDC-HLSWLHRWLK 48
+ +N L +PDG+F L L+ + + N + C C + +L RWL
Sbjct: 501 MASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN 545
Score = 56.3 bits (136), Expect = 9e-09
Identities = 24/99 (24%), Positives = 33/99 (33%), Gaps = 10/99 (10%)
Query: 122 LPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQIS-KVAVDAFQGLKSLTSLTL- 179
+P L L N + + P AF RL ++ L N S V QGL L L
Sbjct: 175 MPLLNLSLDLSLNPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV 233
Query: 180 -----NNNNLTYLPDGVFAEL--FRLRTLRISENSFICD 211
N NL L + R++ + D
Sbjct: 234 LGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD 272
Score = 55.9 bits (135), Expect = 1e-08
Identities = 39/229 (17%), Positives = 58/229 (25%), Gaps = 25/229 (10%)
Query: 5 LNNNNLTYLPDG-VFAELFRLRTLRISENSF--ICDCHLSWLHRWLKRYPRLGLYT---K 58
+ +N + F+ L L L +S N I L LH+ L L
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190
Query: 59 CFAPSHIKGQNI--LDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLN 116
P K + L + + + G E + E L
Sbjct: 191 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN------EGNLE 244
Query: 117 KVPILLPEATTELRLEQNDITELP------PKAFANYKRLRRIDLSKNQISKVAVDAFQG 170
K E L +E+ + L F + L I + V F
Sbjct: 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER--VKDFSY 302
Query: 171 LKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHR 219
L L N P +L L+ L + N L
Sbjct: 303 NFGWQHLELVNCKFGQFP---TLKLKSLKRLTFTSNKGGNAFSEVDLPS 348
Score = 48.9 bits (117), Expect = 2e-06
Identities = 33/222 (14%), Positives = 59/222 (26%), Gaps = 52/222 (23%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYT---KCFA 61
NL L + L L+ L ++ N I L L L L + +
Sbjct: 107 AVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165
Query: 62 PSHIKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPIL 121
+ ++ + + + S N + +
Sbjct: 166 CTDLRVLHQMPLLNLSLDLSL---------------------------------NPMNFI 192
Query: 122 LPEATTELRLEQ-----NDIT-ELPPKAFANYKRLRRIDLSK------NQISKVAVDAFQ 169
P A E+RL + N + + L L + K A +
Sbjct: 193 QPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE 252
Query: 170 GLKSLTSLTLNNNNLTYLPD---GVFAELFRLRTLRISENSF 208
GL +LT L Y D +F L + + + +
Sbjct: 253 GLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI 294
Score = 44.7 bits (106), Expect = 4e-05
Identities = 11/46 (23%), Positives = 21/46 (45%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
L Q + +L P AF + L+ + + N + +P F L++
Sbjct: 477 LSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQK 522
Score = 38.5 bits (90), Expect = 0.004
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 359 LEQNDITE-LPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
+ N E P F + L + L Q + +L P AF + L+
Sbjct: 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498
Score = 38.2 bits (89), Expect = 0.004
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSF 34
+++ + +G+F L L L+++ NSF
Sbjct: 428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457
Score = 36.6 bits (85), Expect = 0.012
Identities = 7/63 (11%), Positives = 19/63 (30%), Gaps = 2/63 (3%)
Query: 343 SYISNNFKRWTN-RSRRLEQNDITELPP-KAFANYKRLRRIRLEQNDITELPPKAFANYK 400
+S+NF + +++ ++ F + + L + + F
Sbjct: 386 ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 445
Query: 401 RLR 403
L
Sbjct: 446 SLE 448
Score = 32.8 bits (75), Expect = 0.23
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 5 LNNNNLTYLPD-GVFAELFRLRTLRISEN 32
++NL + + VF L L L IS
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHT 431
Score = 30.5 bits (69), Expect = 1.1
Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 5 LNNNNLTY-LPDGVFAELFRLRTLRISEN 32
+ N+ +F EL L L +S+
Sbjct: 452 MAGNSFQENFLPDIFTELRNLTFLDLSQC 480
Score = 29.3 bits (66), Expect = 2.7
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQN 386
+ N + +P F L++I L N
Sbjct: 501 MASNQLKSVPDGIFDRLTSLQKIWLHTN 528
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG;
2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 115 bits (291), Expect = 4e-28
Identities = 37/108 (34%), Positives = 49/108 (45%)
Query: 101 CRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQI 160
C + + DC L +VP LP T L L N + LP F Y +L +D+ N I
Sbjct: 2 CTVSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61
Query: 161 SKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSF 208
SK+ + Q L L L L +N L+ L D FA L L + NS
Sbjct: 62 SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI 109
Score = 98.1 bits (245), Expect = 3e-22
Identities = 34/159 (21%), Positives = 52/159 (32%), Gaps = 38/159 (23%)
Query: 127 TELRLEQNDITELPPKA--------FANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLT 178
L L+ N++ L A L ++L N ++ V+ F+ L L +
Sbjct: 507 EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIID 566
Query: 179 LNNNNLTYLPDGVFAELFRLRTL-------------------------RISENSFICDC- 212
L NNL LP VF L++L + N F C C
Sbjct: 567 LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626
Query: 213 HLSWLHRWLK----RYPRLGLYTKCFAPSHIKGQNILDI 247
++W W+ P L + C P H G +
Sbjct: 627 SIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRLF 665
Score = 83.9 bits (208), Expect = 1e-17
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
TEL L N I ++ F K L +DLS N +S + L++L L L+NN +
Sbjct: 100 TELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA 159
Query: 187 LPDGVFAELF--RLRTLRISENSF 208
L L+ L +S N
Sbjct: 160 LKSEELDIFANSSLKKLELSSNQI 183
Score = 80.4 bits (199), Expect = 1e-16
Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 2/94 (2%)
Query: 127 TELRLEQNDITELPPKAFAN--YKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNL 184
L L + ++ F + L +DLS N ++ V D+F L L L NN+
Sbjct: 225 RNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 284
Query: 185 TYLPDGVFAELFRLRTLRISENSFICDCHLSWLH 218
+L LF +R L + + L+ L
Sbjct: 285 QHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLP 318
Score = 75.4 bits (186), Expect = 8e-15
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Query: 127 TELRLEQNDIT-ELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLT 185
L L N+I EL + + + + I LS N+ ++ ++F + SL L L L
Sbjct: 408 EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALK 467
Query: 186 YLPD--GVFAELFRLRTLRISENSF 208
+ F L L L +S N+
Sbjct: 468 NVDSSPSPFQPLRNLTILDLSNNNI 492
Score = 75.4 bits (186), Expect = 8e-15
Identities = 41/213 (19%), Positives = 74/213 (34%), Gaps = 57/213 (26%)
Query: 5 LNNNNLTYLPDGVFAELF--RLRTLRISENSF--ICDCHLSWLHRWLKRYPRLGLYTKCF 60
L+N+ L+ + F L L L +S N+ + + +WL + L+ L
Sbjct: 229 LSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQ-LEY---FFLE---- 280
Query: 61 APSHIKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPI 120
NI + H GL V
Sbjct: 281 ------YNNIQHLFSHSLH----------------------------------GLFNVRY 300
Query: 121 L-LPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTL 179
L L + T+ + + ++ +F K L +++ N I + + F GL +L L+L
Sbjct: 301 LNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL 360
Query: 180 NNN--NLTYLPDGVFAELF--RLRTLRISENSF 208
+N+ +L L + F L L L +++N
Sbjct: 361 SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKI 393
Score = 72.3 bits (178), Expect = 7e-14
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 5/87 (5%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQ---GLKSLTSLTLNNNN 183
+L L N I E P F RL + L+ Q+ + S+ +L+L+N+
Sbjct: 174 KKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ 233
Query: 184 LTYLPDGVFAELF--RLRTLRISENSF 208
L+ + F L L L +S N+
Sbjct: 234 LSTTSNTTFLGLKWTNLTMLDLSYNNL 260
Score = 71.6 bits (176), Expect = 1e-13
Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 10/92 (10%)
Query: 127 TELRLEQNDITELP--PKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNL 184
L L + + + P F + L +DLS N I+ + D +GL+ L L L +NNL
Sbjct: 457 QRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL 516
Query: 185 TYL--------PDGVFAELFRLRTLRISENSF 208
L P L L L + N F
Sbjct: 517 ARLWKHANPGGPIYFLKGLSHLHILNLESNGF 548
Score = 70.0 bits (172), Expect = 4e-13
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 127 TELRLEQNDITELPPKAFANYK--RLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNL 184
EL L N I L + + L++++LS NQI + + F + L L LNN L
Sbjct: 148 QELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL 207
Query: 185 TY-LPDGVFAELF--RLRTLRISENSF 208
L + + EL +R L +S +
Sbjct: 208 GPSLTEKLCLELANTSIRNLSLSNSQL 234
Score = 66.6 bits (163), Expect = 5e-12
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 127 TELRLEQND--ITELPPKAFAN--YKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNN 182
L L + + L + F + + L ++L+KN+ISK+ DAF L L L L N
Sbjct: 356 KYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLN 415
Query: 183 NLT-YLPDGVFAELFRLRTLRISENSF 208
+ L + L + + +S N +
Sbjct: 416 EIGQELTGQEWRGLENIFEIYLSYNKY 442
Score = 62.3 bits (152), Expect = 1e-10
Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 8/107 (7%)
Query: 299 CRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWTN-RSR 357
C + + DC L +VP LP T L + L + NF R++ S
Sbjct: 2 CTVSHEVADCSHLKLTQVPDDLPTNITVL-------NLTHNQLRRLPAANFTRYSQLTSL 54
Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
+ N I++L P+ L+ + L+ N++++L K FA L
Sbjct: 55 DVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTE 101
Score = 56.9 bits (138), Expect = 6e-09
Identities = 24/109 (22%), Positives = 32/109 (29%), Gaps = 30/109 (27%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTL-------------------------RISENSFICDC- 38
L NNL LP VF L++L + N F C C
Sbjct: 567 LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626
Query: 39 HLSWLHRWLK----RYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGP 83
++W W+ P L + C P H G + K S
Sbjct: 627 SIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRLFDTSSCKDSAH 675
Score = 46.5 bits (111), Expect = 1e-05
Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Query: 332 SIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITE 390
++ R+ K K ++ LE N E+P + F + L+ I L N++
Sbjct: 515 NLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNT 574
Query: 391 LPPKAFANYKRLRR 404
LP F N L+
Sbjct: 575 LPASVFNNQVSLKS 588
Score = 43.8 bits (104), Expect = 8e-05
Identities = 11/46 (23%), Positives = 19/46 (41%)
Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLR 403
L N++ + +FA +L LE N+I L + +R
Sbjct: 254 DLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVR 299
Score = 42.7 bits (101), Expect = 2e-04
Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 5/60 (8%)
Query: 344 YISNNFKRWTNRSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLR 403
+ +F + + + ++ +F K L + +E NDI + F L+
Sbjct: 302 NLKRSF-----TKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLK 356
Score = 41.9 bits (99), Expect = 3e-04
Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDIT-ELPPKAFANYKRLR 403
L +N I+++ AF+ L + L N+I EL + + + +
Sbjct: 387 NLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIF 433
Score = 41.1 bits (97), Expect = 6e-04
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFAN 398
L N++ LP F N L+ + L++N IT + K F
Sbjct: 567 LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGP 606
Score = 40.4 bits (95), Expect = 0.001
Identities = 8/48 (16%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Query: 358 RLEQNDITELPPKAFAN--YKRLRRIRLEQNDITELPPKAFANYKRLR 403
L + ++ F + L + L N++ + +FA +L
Sbjct: 228 SLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLE 275
Score = 40.0 bits (94), Expect = 0.001
Identities = 7/40 (17%), Positives = 13/40 (32%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFAN 398
L N ++ + L+ + L N I L +
Sbjct: 128 LSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDI 167
Score = 40.0 bits (94), Expect = 0.001
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 358 RLEQNDIT-ELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
L N+I EL + + + + I L N +L +FA L+R
Sbjct: 411 DLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQR 458
Score = 39.2 bits (92), Expect = 0.002
Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Query: 359 LEQNDITELPPKAFANYK--RLRRIRLEQNDITELPPKAFANYKRLR 403
L N I L + + L+++ L N I E P F RL
Sbjct: 152 LSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLF 198
Score = 38.4 bits (90), Expect = 0.004
Identities = 12/50 (24%), Positives = 19/50 (38%)
Query: 354 NRSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLR 403
N RL ++ P L + LE N E+P + F + L+
Sbjct: 514 NNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELK 563
Score = 37.7 bits (88), Expect = 0.006
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSF 34
L+ N L FA + L+ L + +
Sbjct: 437 LSYNKYLQLTRNSFALVPSLQRLMLRRVAL 466
Score = 37.3 bits (87), Expect = 0.008
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELP--PKAFANYKRLR 403
L N +L +FA L+R+ L + + + P F + L
Sbjct: 437 LSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT 483
Score = 36.5 bits (85), Expect = 0.017
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSF 34
L++N + G F + RL L ++
Sbjct: 178 LSSNQIKEFSPGCFHAIGRLFGLFLNNVQL 207
Score = 36.5 bits (85), Expect = 0.017
Identities = 8/40 (20%), Positives = 16/40 (40%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFAN 398
L N+I + ++L + L+ N++ L A
Sbjct: 487 LSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPG 526
Score = 36.5 bits (85), Expect = 0.017
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSF 34
L +N L+ L D FA L L + NS
Sbjct: 80 LQHNELSQLSDKTFAFCTNLTELHLMSNSI 109
Score = 36.1 bits (84), Expect = 0.021
Identities = 8/48 (16%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
Query: 358 RLEQNDITELP--PKAFANYKRLRRIRLEQNDITELPPKAFANYKRLR 403
L + + + P F + L + L N+I + ++L
Sbjct: 460 MLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLE 507
Score = 35.4 bits (82), Expect = 0.035
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSF 34
L++N L+ G +L L+ L +S N
Sbjct: 128 LSHNGLSSTKLGTQVQLENLQELLLSNNKI 157
Score = 35.0 bits (81), Expect = 0.047
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSF 34
L+NNN+ + D + L +L L + N+
Sbjct: 487 LSNNNIANINDDMLEGLEKLEILDLQHNNL 516
Score = 35.0 bits (81), Expect = 0.049
Identities = 10/56 (17%), Positives = 22/56 (39%), Gaps = 9/56 (16%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQN---------DITELPPKAFANYKRLRRM 405
LE N+I L + +R + L+++ + ++ +F K L +
Sbjct: 279 LEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHL 334
Score = 35.0 bits (81), Expect = 0.049
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSF 34
L N ++ + F+ L L L + N
Sbjct: 388 LTKNKISKIESDAFSWLGHLEVLDLGLNEI 417
Score = 35.0 bits (81), Expect = 0.050
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQND--ITELPPKAFAN 398
+E NDI + F L+ + L + + L + F +
Sbjct: 336 MEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVS 377
Score = 34.6 bits (80), Expect = 0.056
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSF 34
L +N++ + + F + L TL +S N
Sbjct: 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGL 133
Score = 34.2 bits (79), Expect = 0.070
Identities = 9/38 (23%), Positives = 12/38 (31%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAF 396
L N I E P F RL + L + +
Sbjct: 178 LSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKL 215
Score = 33.8 bits (78), Expect = 0.11
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSF 34
+ N ++ L + +L L+ L + N
Sbjct: 56 VGFNTISKLEPELCQKLPMLKVLNLQHNEL 85
Score = 32.3 bits (74), Expect = 0.34
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSF 34
L +N L LP F +L +L + N+
Sbjct: 32 LTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61
Score = 30.4 bits (69), Expect = 1.1
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 2/32 (6%)
Query: 5 LNNNNLTYLPDGVFAELF--RLRTLRISENSF 34
L+NN + L L+ L +S N
Sbjct: 152 LSNNKIQALKSEELDIFANSSLKKLELSSNQI 183
Score = 30.4 bits (69), Expect = 1.4
Identities = 4/43 (9%), Positives = 11/43 (25%), Gaps = 3/43 (6%)
Query: 359 LEQNDITELPPKAFA---NYKRLRRIRLEQNDITELPPKAFAN 398
L + + +R + L + ++ F
Sbjct: 202 LNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG 244
Score = 30.0 bits (68), Expect = 1.8
Identities = 8/32 (25%), Positives = 11/32 (34%), Gaps = 2/32 (6%)
Query: 5 LNNNNLTYLPD--GVFAELFRLRTLRISENSF 34
L L + F L L L +S N+
Sbjct: 461 LRRVALKNVDSSPSPFQPLRNLTILDLSNNNI 492
Score = 29.2 bits (66), Expect = 2.9
Identities = 11/38 (28%), Positives = 13/38 (34%), Gaps = 8/38 (21%)
Query: 5 LNNNNLTYL--------PDGVFAELFRLRTLRISENSF 34
L +NNL L P L L L + N F
Sbjct: 511 LQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF 548
Score = 27.7 bits (62), Expect = 7.8
Identities = 6/30 (20%), Positives = 13/30 (43%), Gaps = 3/30 (10%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSF 34
++ LT +PD + + L ++ N
Sbjct: 11 CSHLKLTQVPDDLPT---NITVLNLTHNQL 37
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR,
immune system; 2.50A {Eptatretus burgeri}
Length = 270
Score = 109 bits (275), Expect = 1e-27
Identities = 39/112 (34%), Positives = 59/112 (52%), Gaps = 2/112 (1%)
Query: 97 CPHPCRCADGI--VDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRID 154
C C + VDC K L +P +P T +L L+ N ++ LP KAF +LR +
Sbjct: 8 DGGVCSCNNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLY 67
Query: 155 LSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISEN 206
L+ N++ + F+ LK+L +L + +N L LP GVF +L L LR+ N
Sbjct: 68 LNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRN 119
Score = 99.3 bits (248), Expect = 6e-24
Identities = 43/174 (24%), Positives = 73/174 (41%), Gaps = 28/174 (16%)
Query: 108 VDCREKGLNKVP---ILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVA 164
+ + L +P ELRL++N + LPP+ F + +L + L N++ +
Sbjct: 90 LWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLP 149
Query: 165 VDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENS----------------- 207
F L SL L L NN L +P+G F +L L+TL++ N
Sbjct: 150 KGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKM 209
Query: 208 -------FICDCH-LSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFK 253
+ C C+ + ++ +WLK+ GL A G+ +L+I E +
Sbjct: 210 LQLQENPWDCTCNGIIYMAKWLKKKADEGLGGVDTAGCEKGGKAVLEITEKDAA 263
Score = 57.3 bits (139), Expect = 2e-09
Identities = 27/111 (24%), Positives = 37/111 (33%), Gaps = 32/111 (28%)
Query: 295 CPHPCRCADGI--VDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRW 352
C C + VDC K L +P +P T +L
Sbjct: 8 DGGVCSCNNNKNSVDCSSKKLTAIPSNIPADTKKL------------------------- 42
Query: 353 TNRSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLR 403
L+ N ++ LP KAF +LR + L N + LP F K L
Sbjct: 43 -----DLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLE 88
Score = 55.0 bits (133), Expect = 9e-09
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 4 TLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCH-LSWLHRWLKRYPRLGLYTKCFAP 62
L+NN L +P+G F L +L+ L++ EN + C C+ + ++ +WLK+ GL A
Sbjct: 187 KLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKWLKKKADEGLGGVDTAG 246
Query: 63 SHIKGQNILDIPEHEF--KCSGP 83
G+ +L+I E + C P
Sbjct: 247 CEKGGKAVLEITEKDAASDCVSP 269
Score = 43.0 bits (102), Expect = 7e-05
Identities = 20/109 (18%), Positives = 35/109 (32%), Gaps = 23/109 (21%)
Query: 306 VDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNN---------FKRWTNRS 356
+ + L +PI + + L + + N F T +
Sbjct: 90 LWVTDNKLQALPIGVFDQLVNLAEL-------------RLDRNQLKSLPPRVFDSLTKLT 136
Query: 357 R-RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
L N++ LP F L+ +RL N + +P AF L+
Sbjct: 137 YLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKT 185
Score = 40.7 bits (96), Expect = 4e-04
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRL 402
L N + +P AF L+ ++L+ N + +P AF + ++L
Sbjct: 164 LYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKL 207
Score = 37.7 bits (88), Expect = 0.004
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
L+ N L LP VF L +L L + N
Sbjct: 116 LDRNQLKSLPPRVFDSLTKLTYLSLGYN 143
Score = 35.3 bits (82), Expect = 0.022
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
L N L LP GVF +L L+ LR+ N
Sbjct: 140 LGYNELQSLPKGVFDKLTSLKELRLYNN 167
Score = 35.3 bits (82), Expect = 0.024
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENS 33
LN+N L LP G+F EL L TL +++N
Sbjct: 68 LNDNKLQTLPAGIFKELKNLETLWVTDNK 96
Score = 34.2 bits (79), Expect = 0.054
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
+ +N L LP GVF +L L LR+ N
Sbjct: 92 VTDNKLQALPIGVFDQLVNLAELRLDRN 119
Score = 33.8 bits (78), Expect = 0.068
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
L +N L+ LP F L +LR L +++N
Sbjct: 44 LQSNKLSSLPSKAFHRLTKLRLLYLNDN 71
Score = 28.8 bits (65), Expect = 3.4
Identities = 8/29 (27%), Positives = 20/29 (68%)
Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQN 386
+L+ N + +P AF + ++L+ ++L++N
Sbjct: 187 KLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat,
glycoprotein, immune response, inflamma response, innate
immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO
MYR NAG GCS; 3.10A {Homo sapiens}
Length = 605
Score = 112 bits (283), Expect = 3e-27
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 2/111 (1%)
Query: 100 PCRCA--DGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSK 157
PC + C E K+P LP +T L L N + L +F ++ L+ +DLS+
Sbjct: 2 PCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSR 61
Query: 158 NQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSF 208
+I + A+Q L L++L L N + L G F+ L L+ L E +
Sbjct: 62 CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112
Score = 97.4 bits (243), Expect = 4e-22
Identities = 35/150 (23%), Positives = 57/150 (38%), Gaps = 29/150 (19%)
Query: 127 TELRLEQNDITE-LPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLT 185
L++ N E P F + L +DLS+ Q+ +++ AF L SL L +++NN
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 507
Query: 186 YLPDGVFAELFRLRTLRISENS-------------------------FICDCHLSWLHRW 220
L + L L+ L S N F C C +W
Sbjct: 508 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQW 567
Query: 221 LKRYPRLGLY---TKCFAPSHIKGQNILDI 247
+K +L + +C PS +G +L +
Sbjct: 568 IKDQRQLLVEVERMECATPSDKQGMPVLSL 597
Score = 73.9 bits (182), Expect = 2e-14
Identities = 18/84 (21%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVA-VDAFQGLKSLTSLTLNNNNLT 185
L L N + + F ++L +D + + +++ F L++L L +++ +
Sbjct: 376 KYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434
Query: 186 YLPDGVFAELFRLRTLRISENSFI 209
+G+F L L L+++ NSF
Sbjct: 435 VAFNGIFNGLSSLEVLKMAGNSFQ 458
Score = 67.0 bits (164), Expect = 3e-12
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 6/87 (6%)
Query: 127 TELRLEQNDITELP-PKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLT----SLTLNN 181
EL + N I P+ F+N L +DLS N+I + + L + SL L+
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186
Query: 182 NNLTYLPDGVFAELFRLRTLRISENSF 208
N + ++ G F E+ RL L + N
Sbjct: 187 NPMNFIQPGAFKEI-RLHKLTLRNNFD 212
Score = 65.8 bits (161), Expect = 8e-12
Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 4/85 (4%)
Query: 127 TELRLEQNDIT--ELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNL 184
L L +N ++ ++ L+ +DLS N + + F GL+ L L ++NL
Sbjct: 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNL 408
Query: 185 TYL-PDGVFAELFRLRTLRISENSF 208
+ VF L L L IS
Sbjct: 409 KQMSEFSVFLSLRNLIYLDISHTHT 433
Score = 62.4 bits (152), Expect = 1e-10
Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 4/73 (5%)
Query: 5 LNNNNLTYLPDGVFAELFR-LRTLRISENSFICDCHLSWLHRWLKRYPRLGLY---TKCF 60
+ N++ L L +++N F C C +W+K +L + +C
Sbjct: 525 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECA 584
Query: 61 APSHIKGQNILDI 73
PS +G +L +
Sbjct: 585 TPSDKQGMPVLSL 597
Score = 61.6 bits (150), Expect = 2e-10
Identities = 34/215 (15%), Positives = 52/215 (24%), Gaps = 49/215 (22%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSH 64
L+ N + ++ G F E+ RL L + N + + + L L F
Sbjct: 184 LSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLN-VMKTCIQGLAGLEVHRLVLGEFRNEG 241
Query: 65 IKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPE 124
N+ + + GL + I
Sbjct: 242 ----NLEKFDKSALE----------------------------------GLCNLTIE--- 260
Query: 125 ATTELRLEQNDI-TELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNN 183
E RL D + F + L I +V F L L N
Sbjct: 261 ---EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCK 315
Query: 184 LTYLPDGVFAELFRLRTLRISENSFICDCHLSWLH 218
P L RL + + L L
Sbjct: 316 FGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLE 350
Score = 58.1 bits (141), Expect = 2e-09
Identities = 24/109 (22%), Positives = 39/109 (35%), Gaps = 10/109 (9%)
Query: 298 PCRCA--DGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWTN- 354
PC + C E K+P LP +T L + L S +F +
Sbjct: 2 PCVEVVPNITYQCMELNFYKIPDNLPFSTKNL-------DLSFNPLRHLGSYSFFSFPEL 54
Query: 355 RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLR 403
+ L + +I + A+ + L + L N I L AF+ L+
Sbjct: 55 QVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103
Score = 54.6 bits (132), Expect = 3e-08
Identities = 25/91 (27%), Positives = 31/91 (34%), Gaps = 5/91 (5%)
Query: 122 LPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQIS-KVAVDAFQGLKSLTSLTL- 179
+P L L N + + P AF RL ++ L N S V QGL L L
Sbjct: 175 MPLLNLSLDLSLNPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV 233
Query: 180 --NNNNLTYLPDGVFAELFRLRTLRISENSF 208
N L + L L L I E
Sbjct: 234 LGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264
Score = 43.1 bits (102), Expect = 1e-04
Identities = 10/46 (21%), Positives = 19/46 (41%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
L Q + +L P AF + L+ + + N+ L + L+
Sbjct: 477 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 522
Score = 38.9 bits (91), Expect = 0.002
Identities = 5/40 (12%), Positives = 12/40 (30%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFAN 398
+ N+ L + L+ + N I + +
Sbjct: 501 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 540
Score = 37.3 bits (87), Expect = 0.009
Identities = 8/31 (25%), Positives = 17/31 (54%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFI 35
+++ + +G+F L L L+++ NSF
Sbjct: 428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458
Score = 36.2 bits (84), Expect = 0.022
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSF 34
L N + L G F+ L L+ L E +
Sbjct: 83 LTGNPIQSLALGAFSGLSSLQKLVAVETNL 112
Score = 35.8 bits (83), Expect = 0.022
Identities = 7/63 (11%), Positives = 19/63 (30%), Gaps = 2/63 (3%)
Query: 343 SYISNNFKRWTN-RSRRLEQNDITEL-PPKAFANYKRLRRIRLEQNDITELPPKAFANYK 400
+S+NF + +++ ++ F + + L + + F
Sbjct: 386 ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 445
Query: 401 RLR 403
L
Sbjct: 446 SLE 448
Score = 35.8 bits (83), Expect = 0.026
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 359 LEQNDITE-LPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLR 403
+ N E P F + L + L Q + +L P AF + L+
Sbjct: 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497
Score = 34.6 bits (80), Expect = 0.053
Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 1/46 (2%)
Query: 359 LEQNDITELP-PKAFANYKRLRRIRLEQNDITELPPKAFANYKRLR 403
+ N I P+ F+N L + L N I + ++
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176
Score = 34.6 bits (80), Expect = 0.058
Identities = 7/46 (15%), Positives = 12/46 (26%), Gaps = 1/46 (2%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITE-LPPKAFANYKRLR 403
+ F L +++ N E P F + L
Sbjct: 428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 473
Score = 33.5 bits (77), Expect = 0.12
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSF 34
NL L + L L+ L ++ N
Sbjct: 107 AVETNLASLENFPIGHLKTLKELNVAHNLI 136
Score = 33.5 bits (77), Expect = 0.13
Identities = 7/52 (13%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
Query: 353 TNRSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
N + + + + ++P + + + L N + L +F ++ L+
Sbjct: 8 PNITYQCMELNFYKIPDNLPFS---TKNLDLSFNPLRHLGSYSFFSFPELQV 56
Score = 32.7 bits (75), Expect = 0.22
Identities = 13/65 (20%), Positives = 20/65 (30%), Gaps = 3/65 (4%)
Query: 340 LLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFAN 398
I + F TN S L I + F+ + + L + P +
Sbjct: 269 YYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKS 326
Query: 399 YKRLR 403
KRL
Sbjct: 327 LKRLT 331
Score = 32.7 bits (75), Expect = 0.23
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSF 34
L+ N L +L F L+ L +S
Sbjct: 35 LSFNPLRHLGSYSFFSFPELQVLDLSRCEI 64
Score = 32.7 bits (75), Expect = 0.26
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSF 34
L+ + + DG + L L TL ++ N
Sbjct: 59 LSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88
Score = 31.9 bits (73), Expect = 0.42
Identities = 8/44 (18%), Positives = 14/44 (31%), Gaps = 4/44 (9%)
Query: 359 LEQNDITELPPKAFANYKRLR----RIRLEQNDITELPPKAFAN 398
L N I + ++ + L N + + P AF
Sbjct: 156 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199
Score = 30.4 bits (69), Expect = 1.1
Identities = 9/31 (29%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 5 LNNNNLTYL-PDGVFAELFRLRTLRISENSF 34
++NL + VF L L L IS
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433
Score = 30.0 bits (68), Expect = 1.4
Identities = 7/48 (14%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 359 LEQNDIT--ELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
L +N ++ ++ L+ + L N + + F ++L
Sbjct: 354 LSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEH 400
Score = 28.8 bits (65), Expect = 4.0
Identities = 6/30 (20%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSF 34
L+ N + + F L +L L ++
Sbjct: 380 LSFNGVITMSSN-FLGLEQLEHLDFQHSNL 408
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1,
lipopeptide, innate immunity, glycoPro immune response,
inflammatory response, leucine-rich repeat membrane,
receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Length = 520
Score = 108 bits (271), Expect = 6e-26
Identities = 50/350 (14%), Positives = 103/350 (29%), Gaps = 53/350 (15%)
Query: 107 IVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVD 166
+VD + GL VP L + TT L + QN I+EL + +LR + +S N+I + +
Sbjct: 4 LVDRSKNGLIHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDIS 63
Query: 167 AFQGLKSLTSLTLNNNNLTYLP----------------------DGVFAELFRLRTLRIS 204
F+ + L L L++N L + F + +L+ L +S
Sbjct: 64 VFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLS 123
Query: 205 EN-----SFICDCHLSWLHRWLKRYPRLGLY--TKCFAPSHIKGQNILDIPEHEFK---- 253
S + HL+ L G + + + +I+ EF
Sbjct: 124 TTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILD 183
Query: 254 -CSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKG 312
+ + + Y + K + +
Sbjct: 184 VSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQL 243
Query: 313 LNKVPIL-----------------LPEATTELTYMVSIDRVDKVLLYSYISNNFKRWTN- 354
+ + + T L +SI +V + S ++ ++N
Sbjct: 244 VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKA-LSIHQVVSDVFGFPQSYIYEIFSNM 302
Query: 355 RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
+ + + + + N +T+ + + L
Sbjct: 303 NIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELET 352
Score = 85.7 bits (212), Expect = 3e-18
Identities = 26/101 (25%), Positives = 50/101 (49%), Gaps = 4/101 (3%)
Query: 123 PEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNN 182
++ L + N +T+ + R++ +DL N+I + + L++L L + +N
Sbjct: 398 TKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVK-LEALQELNVASN 454
Query: 183 NLTYLPDGVFAELFRLRTLRISENSFICDC-HLSWLHRWLK 222
L +PDG+F L L+ + + N + C C + +L RWL
Sbjct: 455 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN 495
Score = 72.6 bits (178), Expect = 5e-14
Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Query: 126 TTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKV--AVDAFQGLKSLTSLTLNNNN 183
L N +T+ + + L + L NQ+ ++ + +KSL L ++ N+
Sbjct: 326 FLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS 385
Query: 184 LTY-LPDGVFAELFRLRTLRISENSF 208
++Y G + L +L +S N
Sbjct: 386 VSYDEKKGDCSWTKSLLSLNMSSNIL 411
Score = 69.5 bits (170), Expect = 5e-13
Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 2/83 (2%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
+ + + +D S N ++ + L L +L L N L
Sbjct: 303 NIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKE 362
Query: 187 LPD--GVFAELFRLRTLRISENS 207
L + ++ L+ L IS+NS
Sbjct: 363 LSKIAEMTTQMKSLQQLDISQNS 385
Score = 62.6 bits (152), Expect = 9e-11
Identities = 11/82 (13%), Positives = 25/82 (30%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
+ ++ + + + + + + + V + + L +NN LT
Sbjct: 279 SIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTD 338
Query: 187 LPDGVFAELFRLRTLRISENSF 208
L L TL + N
Sbjct: 339 TVFENCGHLTELETLILQMNQL 360
Score = 56.0 bits (135), Expect = 1e-08
Identities = 24/240 (10%), Positives = 59/240 (24%), Gaps = 36/240 (15%)
Query: 5 LNNNNLTYLPD-GVFAELFRLRTLRISEN-----SFICDCHLSWLHRWLKRYPRLGLY-- 56
L+ N LP F + +L+ L +S S + HL+ L G
Sbjct: 97 LSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKED 156
Query: 57 TKCFAPSHIKGQNILDIPEHEFKC------------------SGPVEKPTGECAAEPSCP 98
+ + + +I+ EF + + +
Sbjct: 157 PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKL 216
Query: 99 HPCRCADGI----VDCREKGLNKVPILLPEAT-TELRLEQNDITELPPKAFANY-----K 148
+ ++ ++ L+ T + + +Y K
Sbjct: 217 QTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLK 276
Query: 149 RLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSF 208
L + + ++ ++ + + +++ L S N
Sbjct: 277 ALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLL 336
Score = 52.6 bits (126), Expect = 1e-07
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDC-HLSWLHRWLK 48
+ +N L +PDG+F L L+ + + N + C C + +L RWL
Sbjct: 451 VASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN 495
Score = 37.5 bits (87), Expect = 0.008
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSF 34
+++N + YL VF L L +S N
Sbjct: 52 ISHNRIQYLDISVFKFNQELEYLDLSHNKL 81
Score = 34.8 bits (80), Expect = 0.051
Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
L N I +P + + L+ + + N + +P F L++
Sbjct: 428 LHSNKIKSIPKQVV-KLEALQELNVASNQLKSVPDGIFDRLTSLQK 472
Score = 34.5 bits (79), Expect = 0.065
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
++ N ++ L L +LR L IS N
Sbjct: 28 ISQNYISELWTSDILSLSKLRILIISHN 55
Score = 31.0 bits (70), Expect = 0.72
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 5 LNNNNLTYLPD--GVFAELFRLRTLRISENS 33
L N L L + ++ L+ L IS+NS
Sbjct: 355 LQMNQLKELSKIAEMTTQMKSLQQLDISQNS 385
Score = 31.0 bits (70), Expect = 0.87
Identities = 40/311 (12%), Positives = 100/311 (32%), Gaps = 41/311 (13%)
Query: 121 LLPEATTELRLEQNDITELPPKAFANY--KRLRRIDLSKNQISKVAVDAFQGLKSLTSLT 178
L + L L + + P+ ++ + L + + + + + + + +L
Sbjct: 137 HLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSN 196
Query: 179 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSW--LHRWLKRYPRLGLYTKCFAP 236
+ + L +L+T N + + +W R L+ ++ +
Sbjct: 197 IKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISN 256
Query: 237 SHIKGQNILDIPEHEFKCSGSSMET------RSKIYREECSTDFHPYNSCPVEKPTGECA 290
++GQ +F SG+S++ S ++ S + +++ ++ T
Sbjct: 257 VKLQGQLDFR----DFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGT 312
Query: 291 AEPSCPHPCRCADG-IVDCREKGLNKVPILLPEATTELTYMV-------SIDRVDKV--- 339
P + + +D L TEL ++ + ++ ++
Sbjct: 313 RMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQ 372
Query: 340 ---LLYSYISNN----------FKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQ 385
L IS N + S + N +T+ + R++ + L
Sbjct: 373 MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHS 430
Query: 386 NDITELPPKAF 396
N I +P +
Sbjct: 431 NKIKSIPKQVV 441
Score = 29.8 bits (67), Expect = 1.6
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQN 386
+ N + +P F L++I L N
Sbjct: 451 VASNQLKSVPDGIFDRLTSLQKIWLHTN 478
Score = 29.4 bits (66), Expect = 2.4
Identities = 7/31 (22%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 5 LNNNNLTY-LPDGVFAELFRLRTLRISENSF 34
++ N+++Y G + L +L +S N
Sbjct: 381 ISQNSVSYDEKKGDCSWTKSLLSLNMSSNIL 411
Score = 29.1 bits (65), Expect = 3.2
Identities = 3/32 (9%), Positives = 9/32 (28%)
Query: 3 RTLNNNNLTYLPDGVFAELFRLRTLRISENSF 34
+ + + +++ L S N
Sbjct: 305 KNFTVSGTRMVHMLCPSKISPFLHLDFSNNLL 336
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 108 bits (271), Expect = 1e-25
Identities = 53/300 (17%), Positives = 90/300 (30%), Gaps = 81/300 (27%)
Query: 4 TLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHR------WLKRYPRLGLYT 57
L N++ + D F L +L+TL + +N+ + + L P++ L
Sbjct: 344 DLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTA 403
Query: 58 KCFAPSHIKGQNI--------------LDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRC 103
S + +N+ L + ++ F SC
Sbjct: 404 NLIHLSENRLENLDILYFLLRVPHLQILILNQNRFS----------------SCSGDQTP 447
Query: 104 ADGIVDCREKGLNKVPILLPEATTELRLEQNDI-----TELPPKAFANYKRLRRIDLSKN 158
+ + +L L +N + TEL F L+ + L+ N
Sbjct: 448 S-----------------ENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN 490
Query: 159 QISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFA-------------------ELFRLR 199
++ + F L +L L+LN+N LT L L
Sbjct: 491 YLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLS 550
Query: 200 TLRISENSFICDCHLSWLHRWLK----RYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS 255
L I+ N FIC+C LS WL C P G ++ +
Sbjct: 551 VLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEE 610
Score = 106 bits (265), Expect = 7e-25
Identities = 46/234 (19%), Positives = 83/234 (35%), Gaps = 21/234 (8%)
Query: 5 LNNNNLTYLP-DGVFAELFRLRTLRISENSF--ICDCHLSWLHRWLKRYPRL-------- 53
L+ N + L F +L L+++ S N +C+ L L + L
Sbjct: 130 LSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSR 189
Query: 54 --GLYTKCFAPSHIKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCR 111
+ KC P ILD+ + + + + +
Sbjct: 190 VSVDWGKCMNPFRNMVLEILDVSGNGWTVD-ITGNFSNAISKSQAFSLILAHHIMGAGFG 248
Query: 112 EKGLNKVPI-----LLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVD 166
+ L + L L + L + F K L+ ++L+ N+I+K+A +
Sbjct: 249 FHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADE 308
Query: 167 AFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISEN--SFICDCHLSWLH 218
AF GL +L L L+ N L L F L ++ + + +N + I D +L
Sbjct: 309 AFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLE 362
Score = 94.5 bits (235), Expect = 5e-21
Identities = 39/135 (28%), Positives = 50/135 (37%), Gaps = 28/135 (20%)
Query: 101 CRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELP-------------------- 140
C I R L +VP +L T L L N I +
Sbjct: 2 CSFDGRIAFYRFCNLTQVPQVLN-TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT 60
Query: 141 -----PKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLT--YLPDGVFA 193
+AF N LR +DL ++I + DAFQGL L L L L+ L DG F
Sbjct: 61 PLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFR 120
Query: 194 ELFRLRTLRISENSF 208
L L L +S+N
Sbjct: 121 NLKALTRLDLSKNQI 135
Score = 88.7 bits (220), Expect = 3e-19
Identities = 22/92 (23%), Positives = 43/92 (46%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
L L N I ++ +AF L+ ++LS N + ++ F GL + + L N++
Sbjct: 293 KVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAI 352
Query: 187 LPDGVFAELFRLRTLRISENSFICDCHLSWLH 218
+ D F L +L+TL + +N+ + +
Sbjct: 353 IQDQTFKFLEKLQTLDLRDNALTTIHFIPSIP 384
Score = 87.9 bits (218), Expect = 6e-19
Identities = 44/251 (17%), Positives = 74/251 (29%), Gaps = 51/251 (20%)
Query: 5 LNNNNLT--YLPDGVFAELFRLRTLRISENSF---------------------------I 35
L L+ L DG F L L L +S+N +
Sbjct: 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163
Query: 36 CDCHLSWLHRWLKRYPRLG---LYTKCFAPSHIKGQNILDIPEHEFKCSGPVEKPTGECA 92
C+ L L + L LY++ ++ SG
Sbjct: 164 CEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGW------- 216
Query: 93 AEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKR--L 150
+ ++ I ++L ++I + FA R +
Sbjct: 217 ---TVDITGNFSNAI-----SKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSV 268
Query: 151 RRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSF-- 208
R +DLS + + F+ LK L L L N + + D F L L+ L +S N
Sbjct: 269 RHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGE 328
Query: 209 ICDCHLSWLHR 219
+ + L +
Sbjct: 329 LYSSNFYGLPK 339
Score = 73.7 bits (181), Expect = 3e-14
Identities = 42/220 (19%), Positives = 72/220 (32%), Gaps = 38/220 (17%)
Query: 4 TLNNNNLTYLPDGVFAELFRLRTLRISENSF--ICDCHLSWLHRWLKRYPRLGLYTKCFA 61
L N + + D F L L+ L +S N + + L + + +
Sbjct: 296 NLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPK-VAY-----ID----- 344
Query: 62 PSHIKGQNILDIPEHEFKCSGPVEK------PTGECAAEPSCPHPCRCADGIVDCREKGL 115
++ +I I + FK ++ PS P + L
Sbjct: 345 ---LQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPD--------IFLSGNKL 393
Query: 116 NKVPILLPEATTELRLEQNDITELPPKAF-ANYKRLRRIDLSKNQISKVAVDA-FQGLKS 173
+P + A + L +N + L F L+ + L++N+ S + D S
Sbjct: 394 VTLPKINLTANL-IHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPS 452
Query: 174 LTSLTLNNNNLTY-----LPDGVFAELFRLRTLRISENSF 208
L L L N L L VF L L+ L ++ N
Sbjct: 453 LEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYL 492
Score = 57.9 bits (140), Expect = 3e-09
Identities = 25/117 (21%), Positives = 33/117 (28%), Gaps = 28/117 (23%)
Query: 299 CRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNN---------F 349
C I R L +VP +L T L +S N F
Sbjct: 2 CSFDGRIAFYRFCNLTQVPQVLN-TTERL----------------LLSFNYIRTVTASSF 44
Query: 350 KRWTN-RSRRLEQNDIT-ELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
+ L + +AF N LR + L + I L P AF L
Sbjct: 45 PFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101
Score = 53.3 bits (128), Expect = 1e-07
Identities = 19/93 (20%), Positives = 28/93 (30%), Gaps = 7/93 (7%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLK----RYPRLGLYTKCF 60
++ N L VF L L I+ N FIC+C LS WL C
Sbjct: 533 ISRNQLLAPNPDVFV---SLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCV 589
Query: 61 APSHIKGQNILDIPEHEFKCSGPVEKPTGECAA 93
P G ++ + ++
Sbjct: 590 YPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLFI 622
Score = 46.7 bits (111), Expect = 9e-06
Identities = 11/46 (23%), Positives = 19/46 (41%)
Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLR 403
L + L + F K L+ + L N I ++ +AF L+
Sbjct: 272 DLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQ 317
Score = 42.9 bits (101), Expect = 2e-04
Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 9/60 (15%)
Query: 344 YISNNFKRWTNRSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLR 403
++ N L+ TEL F L+ + L N + LPP F++ LR
Sbjct: 457 FLGEN---------MLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALR 507
Score = 42.5 bits (100), Expect = 2e-04
Identities = 11/48 (22%), Positives = 20/48 (41%)
Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
L N I ++ +AF L+ + L N + EL F ++ +
Sbjct: 296 NLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYI 343
Score = 40.9 bits (96), Expect = 6e-04
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 358 RLEQNDITELPPKAFANYKR--LRRIRLEQNDITELPPKAFANYKRLRR 404
++I + FA R +R + L + L + F K L+
Sbjct: 246 GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKV 294
Score = 40.9 bits (96), Expect = 6e-04
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLR 403
L N + EL F ++ I L++N I + + F ++L+
Sbjct: 321 LSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQ 365
Score = 40.9 bits (96), Expect = 7e-04
Identities = 12/40 (30%), Positives = 17/40 (42%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFAN 398
L N + LPP F++ LR + L N +T L
Sbjct: 487 LNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPA 526
Score = 36.7 bits (85), Expect = 0.013
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSF 34
L ++ + +L F LF L LR+
Sbjct: 80 LGSSKIYFLHPDAFQGLFHLFELRLYFCGL 109
Score = 36.3 bits (84), Expect = 0.020
Identities = 9/41 (21%), Positives = 13/41 (31%), Gaps = 1/41 (2%)
Query: 359 LEQNDITELPP-KAFANYKRLRRIRLEQNDITELPPKAFAN 398
L +N I L +F L+ I N I +
Sbjct: 130 LSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP 170
Score = 33.6 bits (77), Expect = 0.14
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
L+ N + + F L +L+ L +
Sbjct: 31 LSFNYIRTVTASSFPFLEQLQLLELGSQ 58
Score = 33.2 bits (76), Expect = 0.18
Identities = 10/59 (16%), Positives = 18/59 (30%), Gaps = 2/59 (3%)
Query: 344 YISNNFKRWTNRSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRL 402
+S N WT N I++ + + ++I + FA R
Sbjct: 210 DVSGN--GWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARS 266
Score = 32.9 bits (75), Expect = 0.20
Identities = 8/57 (14%), Positives = 16/57 (28%), Gaps = 3/57 (5%)
Query: 345 ISNNFKRWTN-RSRRLEQNDITELPPKAFAN--YKRLRRIRLEQNDITELPPKAFAN 398
+ +F + + +S N I + K L L N + +
Sbjct: 140 LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGK 196
Score = 31.7 bits (72), Expect = 0.55
Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 341 LYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELP 392
L S+NF L++N I + + F ++L+ + L N +T +
Sbjct: 326 LGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH 378
Score = 28.6 bits (64), Expect = 4.7
Identities = 6/31 (19%), Positives = 10/31 (32%), Gaps = 1/31 (3%)
Query: 5 LNNNNLTY-LPDGVFAELFRLRTLRISENSF 34
L + + F L LR L + +
Sbjct: 55 LGSQYTPLTIDKEAFRNLPNLRILDLGSSKI 85
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors,
glycocalicin, leucine rich repeats, BLOO clotting; HET:
NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB:
1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A*
1p8v_A* 1u0n_D 3p72_A
Length = 290
Score = 104 bits (260), Expect = 2e-25
Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 3/113 (2%)
Query: 94 EPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRI 153
P C + V+C ++ L +P LP+ TT L L +N + Y RL ++
Sbjct: 1 HPICEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQL 60
Query: 154 DLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISEN 206
+L + +++ + L L +L L++N L LP + L L L +S N
Sbjct: 61 NLDRAELT--KLQVDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFN 110
Score = 101 bits (254), Expect = 1e-24
Identities = 48/223 (21%), Positives = 75/223 (33%), Gaps = 40/223 (17%)
Query: 108 VDCREKGLNKVPILLPE--ATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAV 165
+D L +P+L A T L + N +T LP A L+ + L N++ +
Sbjct: 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141
Query: 166 DAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENS------------------ 207
L L+L NNNLT LP G+ L L TL + ENS
Sbjct: 142 GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAF 201
Query: 208 -----FICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETR 262
++C+C + + RWL+ K N+ + +C S +
Sbjct: 202 LHGNPWLCNCEILYFRRWLQDNAENVYVWKQGVDVKAMTSNVASV-----QCDNS---DK 253
Query: 263 SKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGI 305
+Y+ CP G+ P D +
Sbjct: 254 FPVYKYPGKG-------CPTLGDEGDTDLYDYYPEEDTEGDKV 289
Score = 57.4 bits (139), Expect = 2e-09
Identities = 20/113 (17%), Positives = 35/113 (30%), Gaps = 32/113 (28%)
Query: 292 EPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKR 351
P C + V+C ++ L +P LP+ TT L
Sbjct: 1 HPICEVSKVASHLEVNCDKRNLTALPPDLPKDTTIL------------------------ 36
Query: 352 WTNRSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
L +N + Y RL ++ L++ ++T+L L
Sbjct: 37 ------HLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--VDGTLPVLGT 81
Score = 55.1 bits (133), Expect = 1e-08
Identities = 28/124 (22%), Positives = 41/124 (33%), Gaps = 29/124 (23%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENS-----------------------FICDCHLS 41
L NNNLT LP G+ L L TL + ENS ++C+C +
Sbjct: 155 LANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEIL 214
Query: 42 WLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPC 101
+ RWL+ K N+ + +C + P + CP
Sbjct: 215 YFRRWLQDNAENVYVWKQGVDVKAMTSNVASV-----QCDNSDKFPVYKYPG-KGCPTLG 268
Query: 102 RCAD 105
D
Sbjct: 269 DEGD 272
Score = 43.2 bits (102), Expect = 7e-05
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
L+ N++ LPP +L ++ L N++TELP + L
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDT 176
Score = 39.7 bits (93), Expect = 0.001
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYK 400
L N++TELP + L + L++N + +P F ++
Sbjct: 155 LANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL 196
Score = 36.2 bits (84), Expect = 0.012
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
++ N LT LP G L L+ L + N
Sbjct: 107 VSFNRLTSLPLGALRGLGELQELYLKGN 134
Score = 32.8 bits (75), Expect = 0.18
Identities = 6/29 (20%), Positives = 8/29 (27%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENS 33
L+ N L RL L +
Sbjct: 38 LSENLLYTFSLATLMPYTRLTQLNLDRAE 66
Score = 28.9 bits (65), Expect = 2.5
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
L++N L LP + L L L +S N
Sbjct: 84 LSHNQLQSLP-LLGQTLPALTVLDVSFN 110
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor,
GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB:
3rez_A*
Length = 130
Score = 99.5 bits (248), Expect = 2e-25
Identities = 46/171 (26%), Positives = 61/171 (35%), Gaps = 52/171 (30%)
Query: 97 CPHPCRCADGIVDCREKGLNK--VPILLPEATTELRLEQNDITELPPKAFANYKRLRRID 154
CP PC CA +VDC +GL +P P TTEL L
Sbjct: 2 CPAPCSCAGTLVDCGRRGLTWASLPTAFPVDTTELVL----------------------- 38
Query: 155 LSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHL 214
NNLT LP G+ L LRT + N + CDC L
Sbjct: 39 -------------------------TGNNLTALPPGLLDALPALRTAHLGANPWRCDCRL 73
Query: 215 SWLHRWLKRYPRLGLYT--KCFAPSHIKGQNILDIPEHEFKCSGSSMETRS 263
L WL P Y +C AP ++G+ + + E E + + + S
Sbjct: 74 VPLRAWLAGRPERAPYRDLRCVAPPALRGRLLPYLAEDELRAACAPGPLSS 124
Score = 85.6 bits (212), Expect = 2e-20
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYT--KCFAP 62
L NNLT LP G+ L LRT + N + CDC L L WL P Y +C AP
Sbjct: 38 LTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPERAPYRDLRCVAP 97
Query: 63 SHIKGQNILDIPEHEFKCSGP 83
++G+ + + E E + +
Sbjct: 98 PALRGRLLPYLAEDELRAACA 118
Score = 51.3 bits (123), Expect = 2e-08
Identities = 27/94 (28%), Positives = 32/94 (34%), Gaps = 32/94 (34%)
Query: 295 CPHPCRCADGIVDCREKGLNK--VPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRW 352
CP PC CA +VDC +GL +P P TTEL
Sbjct: 2 CPAPCSCAGTLVDCGRRGLTWASLPTAFPVDTTEL------------------------- 36
Query: 353 TNRSRRLEQNDITELPPKAFANYKRLRRIRLEQN 386
L N++T LPP LR L N
Sbjct: 37 -----VLTGNNLTALPPGLLDALPALRTAHLGAN 65
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity,
antibody, T cell, leucine-rich repeat, immune system;
1.70A {Petromyzon marinus} PDB: 3m18_A
Length = 251
Score = 101 bits (254), Expect = 4e-25
Identities = 37/108 (34%), Positives = 53/108 (49%), Gaps = 2/108 (1%)
Query: 101 CRCADG--IVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKN 158
C C +G VDC+ K L+ VP +P T +L L+ + L F +L ++L N
Sbjct: 10 CTCNEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN 69
Query: 159 QISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISEN 206
Q+ ++ F L L +L L NN L LP GVF L +L L + N
Sbjct: 70 QLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Score = 84.0 bits (208), Expect = 1e-18
Identities = 31/122 (25%), Positives = 58/122 (47%), Gaps = 4/122 (3%)
Query: 108 VDCREKGLNKVPILLPE---ATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVA 164
+ L +P+ + + +L L N + LP F +L+ + L+ NQ+ +
Sbjct: 88 LGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP 147
Query: 165 VDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDC-HLSWLHRWLKR 223
AF L +L +L+L+ N L +P G F L +L+T+ + N F C + +L +W++
Sbjct: 148 AGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIRE 207
Query: 224 YP 225
Sbjct: 208 NS 209
Score = 74.3 bits (183), Expect = 2e-15
Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 3/102 (2%)
Query: 108 VDCREKGLNKVPI---LLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVA 164
++ L + L L N + LP F + +L ++ L NQ+ +
Sbjct: 64 LNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLP 123
Query: 165 VDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISEN 206
F L L L LN N L +P G F +L L+TL +S N
Sbjct: 124 SGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN 165
Score = 53.2 bits (128), Expect = 4e-08
Identities = 28/118 (23%), Positives = 43/118 (36%), Gaps = 20/118 (16%)
Query: 299 CRCADG--IVDCREKGLNKVPILLPEATTELT-YMVSIDRVD-------KVLLYSYISNN 348
C C +G VDC+ K L+ VP +P T +L + + L + + N
Sbjct: 10 CTCNEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN 69
Query: 349 ---------FKRWTNRSR-RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAF 396
F T L N + LP F + +L ++ L N + LP F
Sbjct: 70 QLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVF 127
Score = 40.8 bits (96), Expect = 4e-04
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 4 TLNNNNLTYLPDGVFAELFRLRTLRISENSFICDC-HLSWLHRWLKRYP 51
+L+ N L +P G F L +L+T+ + N F C + +L +W++
Sbjct: 161 SLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIRENS 209
Score = 36.6 bits (85), Expect = 0.009
Identities = 22/108 (20%), Positives = 38/108 (35%), Gaps = 23/108 (21%)
Query: 306 VDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNN---------FKRWTNRS 356
+ L +P+ + + T+L + Y+ N F R T
Sbjct: 88 LGLANNQLASLPLGVFDHLTQLDKL-------------YLGGNQLKSLPSGVFDRLTKLK 134
Query: 357 R-RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLR 403
RL N + +P AF L+ + L N + +P AF +L+
Sbjct: 135 ELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQ 182
Score = 34.3 bits (79), Expect = 0.054
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
L NN L LP GVF L +L L + N
Sbjct: 90 LANNQLASLPLGVFDHLTQLDKLYLGGN 117
Score = 33.1 bits (76), Expect = 0.11
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
LN N L +P G F +L L+TL +S N
Sbjct: 138 LNTNQLQSIPAGAFDKLTNLQTLSLSTN 165
Score = 32.7 bits (75), Expect = 0.15
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
L N L LP GVF L +L+ LR++ N
Sbjct: 114 LGGNQLKSLPSGVFDRLTKLKELRLNTN 141
Score = 32.4 bits (74), Expect = 0.20
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
L+ N L L GVF +L L TL ++ N
Sbjct: 66 LDYNQLQTLSAGVFDDLTELGTLGLANN 93
Score = 31.2 bits (71), Expect = 0.53
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSF 34
L + L L D F L +L L + N
Sbjct: 42 LQSTGLATLSDATFRGLTKLTWLNLDYNQL 71
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte
receptors, VLR, leucine-rich repeat, LRR adaptive
immunity, immune system; HET: DR2; 1.67A {Petromyzon
marinus}
Length = 229
Score = 100 bits (252), Expect = 6e-25
Identities = 42/110 (38%), Positives = 52/110 (47%)
Query: 97 CPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLS 156
CP C C+ VDCR K VP +P L L N IT+L P F + L+ + L
Sbjct: 13 CPSQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLG 72
Query: 157 KNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISEN 206
NQ+ + V F L LT L L N LT LP VF L L+ L + N
Sbjct: 73 SNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCN 122
Score = 57.4 bits (139), Expect = 1e-09
Identities = 27/103 (26%), Positives = 36/103 (34%), Gaps = 8/103 (7%)
Query: 295 CPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWTN 354
CP C C+ VDCR K VP +P L + + F N
Sbjct: 13 CPSQCSCSGTTVDCRSKRHASVPAGIPTNAQIL-------YLHDNQITKLEPGVFDSLIN 65
Query: 355 RSR-RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAF 396
L N + LP F + +L + L N +T LP F
Sbjct: 66 LKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVF 108
Score = 46.6 bits (111), Expect = 4e-06
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNN 182
EL + N +TELP + L + L +NQ+ + AF L SLT L N
Sbjct: 115 KELFMCCNKLTELP-RGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
Score = 33.9 bits (78), Expect = 0.057
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
L +N L LP GVF L +L L + N
Sbjct: 71 LGSNQLGALPVGVFDSLTQLTVLDLGTN 98
Score = 33.1 bits (76), Expect = 0.12
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
L N LT LP VF L L+ L + N
Sbjct: 95 LGTNQLTVLPSAVFDRLVHLKELFMCCN 122
Score = 32.4 bits (74), Expect = 0.18
Identities = 23/98 (23%), Positives = 37/98 (37%), Gaps = 14/98 (14%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCH-LSWLHRWLKRYPRLGLYTKCFAPS 63
L+ N L +P G F L L + N + C+C + +L W+ + +
Sbjct: 142 LDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDIMYLRNWVADHTSI--------AM 193
Query: 64 HIKGQNILDIPEHEFKCSG---PVEKPTGECAAEPSCP 98
G+ + D KC+G PV T + CP
Sbjct: 194 RWDGKAVNDP--DSAKCAGTNTPVRAVTEASTSPSKCP 229
Score = 28.5 bits (64), Expect = 3.2
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
L++N +T L GVF L L+ L + N
Sbjct: 47 LHDNQITKLEPGVFDSLINLKELYLGSN 74
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 1.50A {Eptatretus burgeri}
Length = 208
Score = 99.7 bits (249), Expect = 1e-24
Identities = 40/110 (36%), Positives = 57/110 (51%)
Query: 97 CPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLS 156
CP C C+ V+C +G VP +P TT L LE N + LP F L ++ L
Sbjct: 1 CPSRCSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLG 60
Query: 157 KNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISEN 206
N++ + F L SLT L L+ N L LP+GVF +L +L+ L ++ N
Sbjct: 61 GNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTN 110
Score = 60.1 bits (146), Expect = 1e-10
Identities = 28/103 (27%), Positives = 41/103 (39%), Gaps = 8/103 (7%)
Query: 295 CPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWTN 354
CP C C+ V+C +G VP +P TT L ++ L S + F T+
Sbjct: 1 CPSRCSCSGTTVECYSQGRTSVPTGIPAQTTYL-------DLETNSLKSLPNGVFDELTS 53
Query: 355 RSR-RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAF 396
++ L N + LP F L + L N + LP F
Sbjct: 54 LTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVF 96
Score = 34.3 bits (79), Expect = 0.041
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
LN N L LPDGVF +L +L+ LR+ +N
Sbjct: 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQN 134
Score = 33.5 bits (77), Expect = 0.073
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
L N L LP+GVF +L L L +S N
Sbjct: 59 LGGNKLQSLPNGVFNKLTSLTYLNLSTN 86
Score = 32.7 bits (75), Expect = 0.14
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
L+ N L LP+GVF +L +L+ L ++ N
Sbjct: 83 LSTNQLQSLPNGVFDKLTQLKELALNTN 110
Score = 30.4 bits (69), Expect = 0.67
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCH-LSWLHRWLKRYP 51
L N L +PDGVF L L+ + + +N + C C + +L W+ ++
Sbjct: 131 LYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHS 178
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 2.30A {Eptatretus burgeri}
Length = 177
Score = 98.1 bits (245), Expect = 2e-24
Identities = 42/110 (38%), Positives = 58/110 (52%)
Query: 97 CPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLS 156
CP C C+ + C KGL VP +P + T L LE N + LP F +L ++ LS
Sbjct: 1 CPSRCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLS 60
Query: 157 KNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISEN 206
+NQI + F L LT L L+ N L LP+GVF +L +L+ L + N
Sbjct: 61 QNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTN 110
Score = 53.4 bits (129), Expect = 1e-08
Identities = 27/102 (26%), Positives = 35/102 (34%), Gaps = 30/102 (29%)
Query: 295 CPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWTN 354
CP C C+ + C KGL VP +P + T L
Sbjct: 1 CPSRCSCSGTEIRCNSKGLTSVPTGIPSSATRL--------------------------- 33
Query: 355 RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAF 396
LE N + LP F +L ++ L QN I LP F
Sbjct: 34 ---ELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVF 72
Score = 33.4 bits (77), Expect = 0.072
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
L+ N L LP+GVF +L +L+ L + N
Sbjct: 83 LHENKLQSLPNGVFDKLTQLKELALDTN 110
Score = 33.0 bits (76), Expect = 0.083
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
L +N L LP GVF +L +L L +S+N
Sbjct: 35 LESNKLQSLPHGVFDKLTQLTKLSLSQN 62
Score = 33.0 bits (76), Expect = 0.083
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
L+ N + LPDGVF +L +L L + EN
Sbjct: 59 LSQNQIQSLPDGVFDKLTKLTILYLHEN 86
Score = 30.7 bits (70), Expect = 0.50
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 4 TLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCH-LSWLHRWLKRYP 51
L+ N L +PDG+F L L+ + + N + C C + +L RWL +
Sbjct: 106 ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNS 154
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto;
diacyl lipopeptide, innate immunity, Leu repeat, cell
membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG;
2.90A {Mus musculus}
Length = 562
Score = 102 bits (255), Expect = 9e-24
Identities = 44/342 (12%), Positives = 86/342 (25%), Gaps = 48/342 (14%)
Query: 100 PCRCADG-IVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKN 158
P +VD + L VP LP T L L QN I+EL + LR + LS N
Sbjct: 27 PFSNELESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN 86
Query: 159 QISKVAVDAFQGLKSLTSLTLNNNNLTYLPD----------------------GVFAELF 196
+I + F + L L +++N L + F L
Sbjct: 87 RIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLT 146
Query: 197 RLRTLRISENSF-------ICDCHLSWLH-----RWLKRYPRLGLYTKCFAPSHIKGQNI 244
+L L +S F + HLS + +K L H+
Sbjct: 147 KLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPN 206
Query: 245 LDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADG 304
+ + + P
Sbjct: 207 SLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTF-----------LSELTRGPTLLNVT 255
Query: 305 IVDCREKGLNKVPILLPEATTELTY--MVSIDRVDKVLLYSYISNNFKRWTNRSRRLEQN 362
+ V + + Y + ++ +++ + + + ++
Sbjct: 256 LQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQ 315
Query: 363 DITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
++ + + L +D + +
Sbjct: 316 VFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTF 357
Score = 77.6 bits (191), Expect = 1e-15
Identities = 48/260 (18%), Positives = 84/260 (32%), Gaps = 67/260 (25%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSH 64
N T + L RL+TL + N + + K L
Sbjct: 360 FTQNVFTDSVFQGCSTLKRLQTLILQRNGLK---NFFKVALMTKNMSSLETLDVSL---- 412
Query: 65 IKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPE 124
N L+ ++ C+ E
Sbjct: 413 ----NSLNSHAYDRTCAWA----------------------------------------E 428
Query: 125 ATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNL 184
+ L L N +T + +++ +DL N+I + D L++L L + +N L
Sbjct: 429 SILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKD-VTHLQALQELNVASNQL 485
Query: 185 TYLPDGVFAELFRLRTLRISENSFICDC-HLSWLHRWLKRYPRLGLYTKCFAPSHIKGQN 243
+PDGVF L L+ + + +N + C C + +L W+ ++ ++
Sbjct: 486 KSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKH-----------SGVVRNSA 534
Query: 244 ILDIPEHEFKCSGSSMETRS 263
P+ KCSGS RS
Sbjct: 535 GSVAPD-SAKCSGSGKPVRS 553
Score = 65.3 bits (159), Expect = 1e-11
Identities = 21/109 (19%), Positives = 43/109 (39%), Gaps = 11/109 (10%)
Query: 108 VDCREKGLNKVPILL------PEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQIS 161
++ + ++ P + P + T L QN T+ + + KRL+ + L +N +
Sbjct: 331 MNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK 390
Query: 162 KVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFR----LRTLRISEN 206
A K+++SL + +L L + + L +S N
Sbjct: 391 NFFKVALM-TKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN 438
Score = 62.2 bits (151), Expect = 1e-10
Identities = 40/291 (13%), Positives = 81/291 (27%), Gaps = 44/291 (15%)
Query: 127 TELRLEQNDITELPP-KAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLT 185
L L ND LP K F N +L + LS + ++ + L L+ + L+ +
Sbjct: 124 RHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLH-LSCILLDLVSY- 181
Query: 186 YLPDGVFAELFRLRTLR-------ISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSH 238
++ G L T S S + ++ L L +
Sbjct: 182 HIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGH---------LQLSNIKLND 232
Query: 239 IKGQNILDIPEHEFKCSGSSMET--RSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCP 296
Q ++ + T + + F + PVE
Sbjct: 233 ENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLN---------- 282
Query: 297 HPCRCADGIVDCREKGLNKVPILLPEATTELTY-MVSIDRVDKVLLYSYISNNFKRWTN- 354
I + + + +E + I+ V + + +
Sbjct: 283 --------IYNLT---ITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEM 331
Query: 355 RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
+ L +D + + + QN T+ + + KRL+ +
Sbjct: 332 NIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTL 382
Score = 59.1 bits (143), Expect = 9e-10
Identities = 18/97 (18%), Positives = 31/97 (31%), Gaps = 5/97 (5%)
Query: 126 TTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLT 185
L +D + + ++ ++N + LK L +L L N L
Sbjct: 331 MNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK 390
Query: 186 YLPD--GVFAELFRLRTLRISENSF---ICDCHLSWL 217
+ + L TL +S NS D +W
Sbjct: 391 NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWA 427
Score = 58.0 bits (140), Expect = 3e-09
Identities = 13/80 (16%), Positives = 25/80 (31%)
Query: 129 LRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLP 188
++ ++ + + LS + + + S T L N T
Sbjct: 310 EHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSV 369
Query: 189 DGVFAELFRLRTLRISENSF 208
+ L RL+TL + N
Sbjct: 370 FQGCSTLKRLQTLILQRNGL 389
Score = 53.7 bits (129), Expect = 6e-08
Identities = 30/237 (12%), Positives = 54/237 (22%), Gaps = 36/237 (15%)
Query: 5 LNNNNLTYLPD-GVFAELFRLRTLRISENSF-------ICDCHLSWLH-----RWLKRYP 51
L+ N+ LP F L +L L +S F + HLS + +K
Sbjct: 128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGE 187
Query: 52 RLGLYTKCFAPSHIKGQNILDIPEH----------------EFKCSGPVEKPTGECAAEP 95
L H+ + T
Sbjct: 188 TESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTR 247
Query: 96 SCPHPCRCADGIVDCREKGLNKVPILL-PEATTELRLEQNDITELPPKAFANY-----KR 149
++ K K+ P L + ITE + Y K
Sbjct: 248 GPTL-LNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKS 306
Query: 150 LRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISEN 206
L + + + L+ ++ ++ L ++N
Sbjct: 307 LMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQN 363
Score = 36.4 bits (84), Expect = 0.016
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
L++N + L VF L L +S N
Sbjct: 83 LSHNRIRSLDFHVFLFNQDLEYLDVSHN 110
Score = 34.5 bits (79), Expect = 0.070
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
L+ N+++ L + L LR LR+S N
Sbjct: 59 LSQNSISELRMPDISFLSELRVLRLSHN 86
Score = 33.7 bits (77), Expect = 0.11
Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
L N I +P K + + L+ + + N + +P F L+
Sbjct: 457 LHNNRIMSIP-KDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQY 501
Score = 29.5 bits (66), Expect = 2.5
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQN 386
+ N + +P F L+ I L N
Sbjct: 480 VASNQLKSVPDGVFDRLTSLQYIWLHDN 507
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY,
crystallography, immune system; 1.55A {Petromyzon
marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Length = 170
Score = 94.6 bits (236), Expect = 3e-23
Identities = 55/163 (33%), Positives = 79/163 (48%), Gaps = 14/163 (8%)
Query: 97 CPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLS 156
CP C C+ VDC K L VP +P T L L N IT+L P F +L R+DL
Sbjct: 3 CPSQCSCSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLD 62
Query: 157 KNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCH-LS 215
NQ++ + F L LT L+LN+N L +P G F L L + + N + C C +
Sbjct: 63 NNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDIL 122
Query: 216 WLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSS 258
+L RW+ ++ P + G LD P+ +CSG++
Sbjct: 123 YLSRWISQH-----------PGLVFGYLNLD-PDSA-RCSGTN 152
Score = 51.1 bits (123), Expect = 6e-08
Identities = 29/102 (28%), Positives = 36/102 (35%), Gaps = 30/102 (29%)
Query: 295 CPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWTN 354
CP C C+ VDC K L VP +P T L
Sbjct: 3 CPSQCSCSGTTVDCSGKSLASVPTGIPTTTQVL--------------------------- 35
Query: 355 RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAF 396
L N IT+L P F +L R+ L+ N +T LP F
Sbjct: 36 ---YLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVF 74
Score = 33.4 bits (77), Expect = 0.068
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
L+NN LT LP GVF +L +L L +++N
Sbjct: 61 LDNNQLTVLPAGVFDKLTQLTQLSLNDN 88
Score = 33.0 bits (76), Expect = 0.083
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 17/98 (17%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCH-LSWLHRWLKRYPRLGLYTKCFAPS 63
LN+N L +P G F L L + + N + C C + +L RW+ ++ P
Sbjct: 85 LNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWISQH-----------PG 133
Query: 64 HIKGQNILDIPEHEFKCSG---PVEKPTGECAAEPSCP 98
+ G LD P+ +CSG PV T + CP
Sbjct: 134 LVFGYLNLD-PDSA-RCSGTNTPVRAVTEASTSPSKCP 169
Score = 32.6 bits (75), Expect = 0.11
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
L +N +T L GVF L +L L + N
Sbjct: 37 LYDNQITKLEPGVFDRLTQLTRLDLDNN 64
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich
repeat, LRR, system; 2.10A {Petromyzon marinus}
Length = 174
Score = 93.5 bits (233), Expect = 8e-23
Identities = 39/130 (30%), Positives = 64/130 (49%), Gaps = 1/130 (0%)
Query: 97 CPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLS 156
CP C C +V+C+ L VP +P L L N IT+L P F + L+++ +
Sbjct: 6 CPSQCSCDQTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFN 65
Query: 157 KNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCH-LS 215
N+++ + F L LT L LN+N+L +P G F L L + + N + C+C +
Sbjct: 66 SNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIM 125
Query: 216 WLHRWLKRYP 225
+L W+ +
Sbjct: 126 YLRNWVADHT 135
Score = 50.7 bits (122), Expect = 9e-08
Identities = 23/102 (22%), Positives = 34/102 (33%), Gaps = 30/102 (29%)
Query: 295 CPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWTN 354
CP C C +V+C+ L VP +P L
Sbjct: 6 CPSQCSCDQTLVNCQNIRLASVPAGIPTDKQRL--------------------------- 38
Query: 355 RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAF 396
L N IT+L P F + L+++ N +T +P F
Sbjct: 39 ---WLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVF 77
Score = 33.4 bits (77), Expect = 0.073
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
LNNN +T L GVF L L+ L + N
Sbjct: 40 LNNNQITKLEPGVFDHLVNLQQLYFNSN 67
Score = 32.6 bits (75), Expect = 0.11
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
N+N LT +P GVF +L +L L +++N
Sbjct: 64 FNSNKLTAIPTGVFDKLTQLTQLDLNDN 91
Score = 30.7 bits (70), Expect = 0.50
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCH-LSWLHRWLKRYP 51
LN+N+L +P G F L L + + N + C+C + +L W+ +
Sbjct: 88 LNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLRNWVADHT 135
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A
{Anopheles gambiae}
Length = 390
Score = 94.3 bits (235), Expect = 2e-21
Identities = 26/80 (32%), Positives = 39/80 (48%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
L L I E+ AFA ++++ + N I + FQ + LT L L N+L+
Sbjct: 72 ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS 131
Query: 187 LPDGVFAELFRLRTLRISEN 206
LP G+F +L TL +S N
Sbjct: 132 LPRGIFHNTPKLTTLSMSNN 151
Score = 91.3 bits (227), Expect = 2e-20
Identities = 17/81 (20%), Positives = 38/81 (46%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
+ + + + +LP +++++ ++L+ QI ++ AF ++ L + N + Y
Sbjct: 48 KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY 107
Query: 187 LPDGVFAELFRLRTLRISENS 207
LP VF + L L + N
Sbjct: 108 LPPHVFQNVPLLTVLVLERND 128
Score = 89.7 bits (223), Expect = 5e-20
Identities = 26/82 (31%), Positives = 40/82 (48%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
+L + N I LPP F N L + L +N +S + F LT+L+++NNNL
Sbjct: 96 QKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER 155
Query: 187 LPDGVFAELFRLRTLRISENSF 208
+ D F L+ L++S N
Sbjct: 156 IEDDTFQATTSLQNLQLSSNRL 177
Score = 87.0 bits (216), Expect = 5e-19
Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 5/96 (5%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
L + N + L L+ +DLS N + V + Q L +L L++N++
Sbjct: 275 ERLYISNNRLVALNL-YGQPIPTLKVLDLSHNHLLHVERNQPQ-FDRLENLYLDHNSIVT 332
Query: 187 LPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLK 222
L L+ L +S N + C+ + +
Sbjct: 333 LKLSTHH---TLKNLTLSHNDWDCNSLRALFRNVAR 365
Score = 85.1 bits (211), Expect = 2e-18
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
T L LE+ND++ LP F N +L + +S N + ++ D FQ SL +L L++N LT+
Sbjct: 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 179
Query: 187 LPDGVFAELFRLRTLRISENSF 208
+ + L +S N
Sbjct: 180 VDLSLIP---SLFHANVSYNLL 198
Score = 84.3 bits (209), Expect = 4e-18
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 9/101 (8%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
T L+L+ N++T+ NY L +DLS N++ K+ F ++ L L ++NN L
Sbjct: 229 TILKLQHNNLTDTA--WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA 286
Query: 187 LPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRL 227
L + L+ L +S N HL + R ++ RL
Sbjct: 287 LN-LYGQPIPTLKVLDLSHN------HLLHVERNQPQFDRL 320
Score = 73.5 bits (181), Expect = 1e-14
Identities = 12/105 (11%), Positives = 30/105 (28%), Gaps = 8/105 (7%)
Query: 108 VDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFA-----NYKRLRRIDLSKNQISK 162
V R+ + L + I + + + + + K
Sbjct: 3 VKPRQPEYKCIDSNLQ---YDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRK 59
Query: 163 VAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENS 207
+ + + L LN+ + + FA ++ L + N+
Sbjct: 60 LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA 104
Score = 71.2 bits (175), Expect = 1e-13
Identities = 17/99 (17%), Positives = 37/99 (37%), Gaps = 19/99 (19%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLK-------------- 172
T L + N++ + F L+ + LS N+++ V + L
Sbjct: 144 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI 203
Query: 173 --SLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFI 209
++ L ++N++ + V E L L++ N+
Sbjct: 204 PIAVEELDASHNSINVVRGPVNVE---LTILKLQHNNLT 239
Score = 62.0 bits (151), Expect = 9e-11
Identities = 21/92 (22%), Positives = 32/92 (34%), Gaps = 10/92 (10%)
Query: 115 LNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSL 174
L V + L + + N ++ L + +D S N I+ V L
Sbjct: 177 LTHVDLSLIPSLFHANVSYNLLSTLAIPIA-----VEELDASHNSINVVRGPVNV---EL 228
Query: 175 TSLTLNNNNLTYLPDGVFAELFRLRTLRISEN 206
T L L +NNLT L + +S N
Sbjct: 229 TILKLQHNNLTDTA--WLLNYPGLVEVDLSYN 258
Score = 61.2 bits (149), Expect = 1e-10
Identities = 19/94 (20%), Positives = 32/94 (34%), Gaps = 8/94 (8%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
L L N + + + RL + L N I + + LK +LTL++N+
Sbjct: 298 KVLDLSHNHLLHVERNQP-QFDRLENLYLDHNSIVTLKLSTHHTLK---NLTLSHNDWDC 353
Query: 187 LPDGVFAELFR-LRTLRISENSFICDCHLSWLHR 219
LFR + + + C H
Sbjct: 354 NS---LRALFRNVARPAVDDADQHCKIDYQLEHG 384
Score = 51.2 bits (123), Expect = 3e-07
Identities = 8/47 (17%), Positives = 22/47 (46%)
Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
+ + + +LP +++++ + L I E+ AFA +++
Sbjct: 51 TFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQK 97
Score = 49.7 bits (119), Expect = 1e-06
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
+ N I LPP F N L + LE+ND++ LP F N +L
Sbjct: 99 YMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT 145
Score = 49.3 bits (118), Expect = 1e-06
Identities = 14/47 (29%), Positives = 20/47 (42%)
Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
L I E+ AFA ++++ + N I LPP F N L
Sbjct: 75 NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121
Score = 49.3 bits (118), Expect = 1e-06
Identities = 12/46 (26%), Positives = 22/46 (47%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
LE+ND++ LP F N +L + + N++ + F L+
Sbjct: 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQN 169
Score = 46.2 bits (110), Expect = 1e-05
Identities = 8/44 (18%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLK 48
L++N++ L L+ L +S N + C+ + +
Sbjct: 325 LDHNSIVTLKLSTHH---TLKNLTLSHNDWDCNSLRALFRNVAR 365
Score = 45.0 bits (107), Expect = 3e-05
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
+L+ N++T+ NY L + L N++ ++ F +RL R
Sbjct: 232 KLQHNNLTDTA--WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER 276
Score = 43.5 bits (103), Expect = 8e-05
Identities = 6/45 (13%), Positives = 16/45 (35%)
Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRL 402
+ N++ + F L+ ++L N +T + +
Sbjct: 147 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHA 191
Score = 43.1 bits (102), Expect = 9e-05
Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
L N++ ++ F +RL R+ + N + L L+
Sbjct: 255 LSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL-YGQPIPTLKV 299
Score = 38.9 bits (91), Expect = 0.002
Identities = 10/62 (16%), Positives = 19/62 (30%), Gaps = 2/62 (3%)
Query: 343 SYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKR 401
++ + + L N + + + RL + L+ N I L K
Sbjct: 285 VALNLYGQPIPTLKVLDLSHNHLLHVERNQP-QFDRLENLYLDHNSIVTLKLSTHHTLKN 343
Query: 402 LR 403
L
Sbjct: 344 LT 345
Score = 37.3 bits (87), Expect = 0.007
Identities = 4/28 (14%), Positives = 12/28 (42%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
N+ + LP + ++ L +++
Sbjct: 52 FKNSTMRKLPAALLDSFRQVELLNLNDL 79
Score = 37.3 bits (87), Expect = 0.007
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
L N+L+ LP G+F +L TL +S N
Sbjct: 124 LERNDLSSLPRGIFHNTPKLTTLSMSNN 151
Score = 36.6 bits (85), Expect = 0.011
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENS 33
+ N + YLP VF + L L + N
Sbjct: 100 MGFNAIRYLPPHVFQNVPLLTVLVLERND 128
Score = 36.2 bits (84), Expect = 0.014
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSF 34
++NNNL + D F L+ L++S N
Sbjct: 148 MSNNNLERIEDDTFQATTSLQNLQLSSNRL 177
Score = 35.8 bits (83), Expect = 0.020
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
L+ N L + F ++ RL L IS N
Sbjct: 255 LSYNELEKIMYHPFVKMQRLERLYISNN 282
Score = 35.0 bits (81), Expect = 0.035
Identities = 3/51 (5%), Positives = 15/51 (29%), Gaps = 5/51 (9%)
Query: 359 LEQNDITELPPKAFA-----NYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
I + + + + + + +LP +++++
Sbjct: 23 FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVEL 73
Score = 34.6 bits (80), Expect = 0.045
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENS 33
LN+ + + FA ++ L + N+
Sbjct: 76 LNDLQIEEIDTYAFAYAHTIQKLYMGFNA 104
Score = 33.9 bits (78), Expect = 0.087
Identities = 6/61 (9%), Positives = 13/61 (21%), Gaps = 16/61 (26%)
Query: 359 LEQNDITELPPKAFAN----------------YKRLRRIRLEQNDITELPPKAFANYKRL 402
L N +T + + + + N I + L
Sbjct: 172 LSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTIL 231
Query: 403 R 403
+
Sbjct: 232 K 232
Score = 32.3 bits (74), Expect = 0.29
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRL 53
++NN L L + L+ L +S N HL + R ++ RL
Sbjct: 279 ISNNRLVALN-LYGQPIPTLKVLDLSHN------HLLHVERNQPQFDRL 320
Score = 29.6 bits (67), Expect = 1.8
Identities = 6/31 (19%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFI 35
++N++ + V E L L++ N+
Sbjct: 212 ASHNSINVVRGPVNVE---LTILKLQHNNLT 239
Score = 28.5 bits (64), Expect = 4.0
Identities = 7/30 (23%), Positives = 13/30 (43%), Gaps = 3/30 (10%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSF 34
L++N LT++ + L +S N
Sbjct: 172 LSSNRLTHVDLSLIP---SLFHANVSYNLL 198
Score = 28.1 bits (63), Expect = 5.3
Identities = 8/28 (28%), Positives = 11/28 (39%), Gaps = 2/28 (7%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
L +NNLT L + +S N
Sbjct: 233 LQHNNLTDTA--WLLNYPGLVEVDLSYN 258
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil,
helix-loop-helix, leucine-rich repeat, protein; HET: NAG
MAN; 2.70A {Anopheles gambiae}
Length = 597
Score = 94.6 bits (235), Expect = 3e-21
Identities = 26/80 (32%), Positives = 39/80 (48%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
L L I E+ AFA ++++ + N I + FQ + LT L L N+L+
Sbjct: 78 ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS 137
Query: 187 LPDGVFAELFRLRTLRISEN 206
LP G+F +L TL +S N
Sbjct: 138 LPRGIFHNTPKLTTLSMSNN 157
Score = 92.3 bits (229), Expect = 2e-20
Identities = 22/126 (17%), Positives = 51/126 (40%), Gaps = 11/126 (8%)
Query: 93 AEPSCP-HPCRCADGIVDC--REKGLNKVPILLPEAT--------TELRLEQNDITELPP 141
+P P + C ++ DC + ++ + + + + + +LP
Sbjct: 9 VKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPA 68
Query: 142 KAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTL 201
+++++ ++L+ QI ++ AF ++ L + N + YLP VF + L L
Sbjct: 69 ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128
Query: 202 RISENS 207
+ N
Sbjct: 129 VLERND 134
Score = 91.1 bits (226), Expect = 6e-20
Identities = 26/81 (32%), Positives = 40/81 (49%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
+L + N I LPP F N L + L +N +S + F LT+L+++NNNL
Sbjct: 102 QKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER 161
Query: 187 LPDGVFAELFRLRTLRISENS 207
+ D F L+ L++S N
Sbjct: 162 IEDDTFQATTSLQNLQLSSNR 182
Score = 85.0 bits (210), Expect = 6e-18
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
T L LE+ND++ LP F N +L + +S N + ++ D FQ SL +L L++N LT+
Sbjct: 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 185
Query: 187 LPDGVFAELFRLRTLRISENSF 208
+ + L +S N
Sbjct: 186 VDLSLIP---SLFHANVSYNLL 204
Score = 84.6 bits (209), Expect = 7e-18
Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 9/113 (7%)
Query: 115 LNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSL 174
+N V + T L+L+ N++T+ NY L +DLS N++ K+ F ++ L
Sbjct: 223 INVVRGPVNVELTILKLQHNNLTDTA--WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL 280
Query: 175 TSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRL 227
L ++NN L L + L+ L +S N HL + R ++ RL
Sbjct: 281 ERLYISNNRLVALN-LYGQPIPTLKVLDLSHN------HLLHVERNQPQFDRL 326
Score = 70.7 bits (173), Expect = 2e-13
Identities = 17/99 (17%), Positives = 37/99 (37%), Gaps = 19/99 (19%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLK-------------- 172
T L + N++ + F L+ + LS N+++ V + L
Sbjct: 150 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI 209
Query: 173 --SLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFI 209
++ L ++N++ + V E L L++ N+
Sbjct: 210 PIAVEELDASHNSINVVRGPVNVE---LTILKLQHNNLT 245
Score = 64.9 bits (158), Expect = 2e-11
Identities = 22/111 (19%), Positives = 35/111 (31%), Gaps = 24/111 (21%)
Query: 115 LNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLK-- 172
L V + L + + N ++ L + +D S N I+ V L
Sbjct: 183 LTHVDLSLIPSLFHANVSYNLLSTLAIPIA-----VEELDASHNSINVVRGPVNVELTIL 237
Query: 173 -----------------SLTSLTLNNNNLTYLPDGVFAELFRLRTLRISEN 206
L + L+ N L + F ++ RL L IS N
Sbjct: 238 KLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 288
Score = 59.2 bits (143), Expect = 1e-09
Identities = 20/138 (14%), Positives = 38/138 (27%), Gaps = 18/138 (13%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
L L N + + + RL + L N I + + +L +LTL++N+
Sbjct: 304 KVLDLSHNHLLHVERNQP-QFDRLENLYLDHNSIVTLKLSTH---HTLKNLTLSHNDWDC 359
Query: 187 LPDGVFAELFR-LRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNIL 245
LFR + + + C H + + +
Sbjct: 360 NS---LRALFRNVARPAVDDADQHCKIDYQLEHGLCCKES----------DKPYLDRLLQ 406
Query: 246 DIPEHEFKCSGSSMETRS 263
I + R
Sbjct: 407 YIALTSVVEKVQRAQGRC 424
Score = 54.2 bits (130), Expect = 5e-08
Identities = 24/199 (12%), Positives = 54/199 (27%), Gaps = 29/199 (14%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSH 64
L++N++ L L+ L +S N + C+ + +
Sbjct: 331 LDHNSIVTLKLSTHH---TLKNLTLSHNDWDCNSLRALFRNVAR---------------- 371
Query: 65 IKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPE 124
+ + + C + G C E P+ R I +
Sbjct: 372 ------PAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCS 425
Query: 125 ATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISK----VAVDAFQGLKSLTSLTLN 180
AT + Q+ + + + +++ N++ + + Q + L L
Sbjct: 426 ATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAE 485
Query: 181 NNNLTYLPDGVFAELFRLR 199
+ L R
Sbjct: 486 IDTNLRRYRLPKDGLARSS 504
Score = 51.5 bits (123), Expect = 3e-07
Identities = 8/47 (17%), Positives = 22/47 (46%)
Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
+ + + +LP +++++ + L I E+ AFA +++
Sbjct: 57 TFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQK 103
Score = 50.3 bits (120), Expect = 7e-07
Identities = 17/46 (36%), Positives = 23/46 (50%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
+ N I LPP F N L + LE+ND++ LP F N +L
Sbjct: 106 MGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT 151
Score = 49.9 bits (119), Expect = 8e-07
Identities = 14/47 (29%), Positives = 20/47 (42%)
Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
L I E+ AFA ++++ + N I LPP F N L
Sbjct: 81 NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127
Score = 49.2 bits (117), Expect = 2e-06
Identities = 12/47 (25%), Positives = 22/47 (46%)
Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
LE+ND++ LP F N +L + + N++ + F L+
Sbjct: 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQN 175
Score = 45.3 bits (107), Expect = 3e-05
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
+L+ N++T+ NY L + L N++ ++ F +RL R
Sbjct: 238 KLQHNNLTDTA--WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER 282
Score = 43.8 bits (103), Expect = 7e-05
Identities = 6/45 (13%), Positives = 16/45 (35%)
Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRL 402
+ N++ + F L+ ++L N +T + +
Sbjct: 153 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHA 197
Score = 43.4 bits (102), Expect = 1e-04
Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
L N++ ++ F +RL R+ + N + L L+
Sbjct: 261 LSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL-YGQPIPTLKV 305
Score = 39.5 bits (92), Expect = 0.001
Identities = 9/47 (19%), Positives = 16/47 (34%), Gaps = 5/47 (10%)
Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
N I + L ++L+ N++T+ NY L
Sbjct: 217 DASHNSINVVRGPVNVE---LTILKLQHNNLTDTA--WLLNYPGLVE 258
Score = 38.0 bits (88), Expect = 0.006
Identities = 10/62 (16%), Positives = 19/62 (30%), Gaps = 2/62 (3%)
Query: 343 SYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKR 401
++ + + L N + + + RL + L+ N I L K
Sbjct: 291 VALNLYGQPIPTLKVLDLSHNHLLHVERNQP-QFDRLENLYLDHNSIVTLKLSTHHTLKN 349
Query: 402 LR 403
L
Sbjct: 350 LT 351
Score = 37.2 bits (86), Expect = 0.008
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
L N+L+ LP G+F +L TL +S N
Sbjct: 130 LERNDLSSLPRGIFHNTPKLTTLSMSNN 157
Score = 37.2 bits (86), Expect = 0.010
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENS 33
+ N + YLP VF + L L + N
Sbjct: 106 MGFNAIRYLPPHVFQNVPLLTVLVLERND 134
Score = 37.2 bits (86), Expect = 0.010
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENS 33
++NNNL + D F L+ L++S N
Sbjct: 154 MSNNNLERIEDDTFQATTSLQNLQLSSNR 182
Score = 36.4 bits (84), Expect = 0.015
Identities = 4/28 (14%), Positives = 12/28 (42%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
N+ + LP + ++ L +++
Sbjct: 58 FKNSTMRKLPAALLDSFRQVELLNLNDL 85
Score = 36.1 bits (83), Expect = 0.022
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
L+ N L + F ++ RL L IS N
Sbjct: 261 LSYNELEKIMYHPFVKMQRLERLYISNN 288
Score = 35.3 bits (81), Expect = 0.036
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENS 33
LN+ + + FA ++ L + N+
Sbjct: 82 LNDLQIEEIDTYAFAYAHTIQKLYMGFNA 110
Score = 34.9 bits (80), Expect = 0.052
Identities = 6/61 (9%), Positives = 13/61 (21%), Gaps = 16/61 (26%)
Query: 359 LEQNDITELPPKAFAN----------------YKRLRRIRLEQNDITELPPKAFANYKRL 402
L N +T + + + + N I + L
Sbjct: 178 LSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTIL 237
Query: 403 R 403
+
Sbjct: 238 K 238
Score = 29.5 bits (66), Expect = 2.3
Identities = 6/32 (18%), Positives = 14/32 (43%), Gaps = 3/32 (9%)
Query: 4 TLNNNNLTYLPDGVFAELFRLRTLRISENSFI 35
++N++ + V E L L++ N+
Sbjct: 217 DASHNSINVVRGPVNVE---LTILKLQHNNLT 245
Score = 28.7 bits (64), Expect = 3.6
Identities = 7/30 (23%), Positives = 13/30 (43%), Gaps = 3/30 (10%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSF 34
L++N LT++ + L +S N
Sbjct: 178 LSSNRLTHVDLSLIP---SLFHANVSYNLL 204
Score = 28.7 bits (64), Expect = 4.4
Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 2/30 (6%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSF 34
L +NNLT L + +S N
Sbjct: 239 LQHNNLTDTA--WLLNYPGLVEVDLSYNEL 266
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix,
leucine-rich repeat, protein; HET: NAG MAN; 2.70A
{Anopheles gambiae}
Length = 487
Score = 88.4 bits (219), Expect = 3e-19
Identities = 34/277 (12%), Positives = 73/277 (26%), Gaps = 61/277 (22%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
L L+ N I ++ + +L+ +DLS N+++ + FQ +T ++L NN L
Sbjct: 172 EHLNLQYNFIYDVKGQVVF--AKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVL 228
Query: 187 LPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILD 246
+ L + N F C L + + R+ + Q +
Sbjct: 229 IEKA-LRFSQNLEHFDLRGNGFHCGT----LRDFFSKNQRV---------QTVAKQTVKK 274
Query: 247 IPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIV 306
+ EEC+ + C + P R
Sbjct: 275 LTGQNE---------------EECTVPTLGHYG-------AYCCEDLPAPFADRLIA--- 309
Query: 307 DCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWTNRSRRLEQNDITE 366
++ + + T L + R +
Sbjct: 310 --LKRKEHALLSGQGSETERLE-----------------CERENQARQREIDALKEQYRT 350
Query: 367 LPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLR 403
+ + + + ++ + E + L
Sbjct: 351 VIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELD 387
Score = 85.3 bits (211), Expect = 3e-18
Identities = 17/93 (18%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
Query: 114 GLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKS 173
++++ ++ + + + + ++ +DLS N +S+++
Sbjct: 1 AIHEIKQNGNR-YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK 59
Query: 174 LTSLTLNNNNLTYLPDGVFAELFRLRTLRISEN 206
L L L++N L D L LRTL ++ N
Sbjct: 60 LELLNLSSNVLYETLD--LESLSTLRTLDLNNN 90
Score = 83.0 bits (205), Expect = 2e-17
Identities = 26/205 (12%), Positives = 46/205 (22%), Gaps = 32/205 (15%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSH 64
L NN L + L + N F C + + +
Sbjct: 221 LRNNKLVLIEKA-LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV-------------QT 266
Query: 65 IKGQNILDIPEHEF-KCSGPVE-KPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILL 122
+ Q + + +C+ P C + P R L
Sbjct: 267 VAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRL---------------IALK 311
Query: 123 PEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNN 182
+ L + ++ L + + R ID K Q V ++ +L
Sbjct: 312 RKEHALLSGQGSETERLECERENQAR-QREIDALKEQYRTVIDQVTLRKQAKITLEQKKK 370
Query: 183 NLTYLPDGVFAELFRLRTLRISENS 207
L L
Sbjct: 371 ALDEQVSNGRRAHAELDGTLQQAVG 395
Score = 80.7 bits (199), Expect = 1e-16
Identities = 23/114 (20%), Positives = 43/114 (37%), Gaps = 9/114 (7%)
Query: 115 LNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQG-LKS 173
+++V + + L N IT L R++ +DL N+I V +
Sbjct: 111 ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170
Query: 174 LTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRL 227
L L L N + + V +L+TL +S N L+++ + +
Sbjct: 171 LEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSN------KLAFMGPEFQSAAGV 216
Score = 74.9 bits (184), Expect = 9e-15
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
EL L N ++++ A + +L ++LS N + + + L +L +L LNNN +
Sbjct: 37 KELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--DLESLSTLRTLDLNNNYVQE 94
Query: 187 LPDGVFAELFRLRTLRISENSF 208
L + TL + N+
Sbjct: 95 LL-----VGPSIETLHAANNNI 111
Score = 70.6 bits (173), Expect = 2e-13
Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 8/82 (9%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
L L N + EL + + + N IS+V+ QG K ++ L NN +T
Sbjct: 83 RTLDLNNNYVQELLV-----GPSIETLHAANNNISRVSCSRGQGKK---NIYLANNKITM 134
Query: 187 LPDGVFAELFRLRTLRISENSF 208
L D R++ L + N
Sbjct: 135 LRDLDEGCRSRVQYLDLKLNEI 156
Score = 49.1 bits (117), Expect = 2e-06
Identities = 4/46 (8%), Positives = 19/46 (41%)
Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLR 403
++ + + + + ++ + L N ++++ A + +L
Sbjct: 16 KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Score = 43.7 bits (103), Expect = 8e-05
Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 3/45 (6%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLR 403
N+I+ + + I L N IT L R++
Sbjct: 106 AANNNISRVSCSRGQG---KKNIYLANNKITMLRDLDEGCRSRVQ 147
Score = 43.7 bits (103), Expect = 9e-05
Identities = 9/39 (23%), Positives = 15/39 (38%)
Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAF 396
L N IT L R++ + L+ N+I +
Sbjct: 126 YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164
Score = 41.4 bits (97), Expect = 4e-04
Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
L N ++++ A + +L + L N + E + LR
Sbjct: 41 LSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRT 84
Score = 37.5 bits (87), Expect = 0.007
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
L N + + P F + + I L N + + KA + L
Sbjct: 198 LSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLI-EKALRFSQNLEH 241
Score = 37.1 bits (86), Expect = 0.010
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSF 34
L NN +T L D R++ L + N
Sbjct: 127 LANNKITMLRDLDEGCRSRVQYLDLKLNEI 156
Score = 36.0 bits (83), Expect = 0.022
Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 359 LEQNDITELPPKAF-ANYKRLRRIRLEQNDITELPPKAF 396
L+ N+I + A+ L + L+ N I ++ +
Sbjct: 151 LKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV 189
Score = 35.6 bits (82), Expect = 0.026
Identities = 8/46 (17%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
L+ N I ++ + +L+ + L N + + P F + +
Sbjct: 176 LQYNFIYDVKGQVVF--AKLKTLDLSSNKLAFMGP-EFQSAAGVTW 218
Score = 35.2 bits (81), Expect = 0.037
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
L+ N L+ + A +L L +S N
Sbjct: 41 LSGNPLSQISAADLAPFTKLELLNLSSN 68
Score = 34.1 bits (78), Expect = 0.084
Identities = 4/28 (14%), Positives = 13/28 (46%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
+ +++L + + ++ L +S N
Sbjct: 17 VTDSSLKQALASLRQSAWNVKELDLSGN 44
Score = 33.7 bits (77), Expect = 0.10
Identities = 2/33 (6%), Positives = 11/33 (33%)
Query: 372 FANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
N R + ++ + + + + ++
Sbjct: 6 KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKE 38
Score = 32.9 bits (75), Expect = 0.20
Identities = 7/45 (15%), Positives = 14/45 (31%), Gaps = 5/45 (11%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLR 403
L N + EL + + N+I+ + K +
Sbjct: 87 LNNNYVQELLV-----GPSIETLHAANNNISRVSCSRGQGKKNIY 126
Score = 30.6 bits (69), Expect = 0.92
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
L++N L D L LRTL ++ N
Sbjct: 65 LSSNVLYETLD--LESLSTLRTLDLNNN 90
Score = 27.5 bits (61), Expect = 8.4
Identities = 6/30 (20%), Positives = 10/30 (33%), Gaps = 1/30 (3%)
Query: 5 LNNNNLTYLPDG-VFAELFRLRTLRISENS 33
L N + + + A L L + N
Sbjct: 151 LKLNEIDTVNFAELAASSDTLEHLNLQYNF 180
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding;
HET: NAG; 2.00A {Anopheles gambiae}
Length = 317
Score = 84.3 bits (209), Expect = 2e-18
Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
++ + + + + ++ +DLS N +S+++ L L L++N L
Sbjct: 13 KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE 72
Query: 187 LPDGVFAELFRLRTLRISEN 206
D L LRTL ++ N
Sbjct: 73 TLD--LESLSTLRTLDLNNN 90
Score = 83.9 bits (208), Expect = 3e-18
Identities = 20/96 (20%), Positives = 39/96 (40%), Gaps = 4/96 (4%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
L L+ N I ++ + +L+ +DLS N+++ + FQ +T ++L NN L
Sbjct: 172 EHLNLQYNFIYDVKGQVVF--AKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVL 228
Query: 187 LPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLK 222
+ L + N F C + + +
Sbjct: 229 IEKA-LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263
Score = 80.4 bits (199), Expect = 4e-17
Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 3/93 (3%)
Query: 115 LNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQG-LKS 173
+++V + + L N IT L R++ +DL N+I V +
Sbjct: 111 ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170
Query: 174 LTSLTLNNNNLTYLPDGVFAELFRLRTLRISEN 206
L L L N + + V +L+TL +S N
Sbjct: 171 LEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSN 201
Score = 73.9 bits (182), Expect = 8e-15
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
EL L N ++++ A + +L ++LS N + + + L +L +L LNNN +
Sbjct: 37 KELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--DLESLSTLRTLDLNNNYVQE 94
Query: 187 LPDGVFAELFRLRTLRISENSF 208
L + TL + N+
Sbjct: 95 LL-----VGPSIETLHAANNNI 111
Score = 69.6 bits (171), Expect = 2e-13
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 8/80 (10%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
L L N + EL + + + N IS+V+ QG K ++ L NN +T
Sbjct: 83 RTLDLNNNYVQELLV-----GPSIETLHAANNNISRVSCSRGQGKK---NIYLANNKITM 134
Query: 187 LPDGVFAELFRLRTLRISEN 206
L D R++ L + N
Sbjct: 135 LRDLDEGCRSRVQYLDLKLN 154
Score = 68.5 bits (168), Expect = 4e-13
Identities = 12/63 (19%), Positives = 25/63 (39%)
Query: 144 FANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRI 203
N R + ++ + + + Q ++ L L+ N L+ + A +L L +
Sbjct: 6 KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65
Query: 204 SEN 206
S N
Sbjct: 66 SSN 68
Score = 48.8 bits (117), Expect = 1e-06
Identities = 4/47 (8%), Positives = 19/47 (40%)
Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
++ + + + + ++ + L N ++++ A + +L
Sbjct: 16 KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62
Score = 45.0 bits (107), Expect = 2e-05
Identities = 12/86 (13%), Positives = 26/86 (30%), Gaps = 6/86 (6%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAV-DAFQGLKSLTSLTLNNNNLT 185
T + L N + + A + L DL N + D F + + ++
Sbjct: 217 TWISLRNNKLVLIEK-ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL 275
Query: 186 YLPDGVFAELFRLRTLRISENSFICD 211
+ + L ++ C+
Sbjct: 276 TGQNEEECTVPTL----GHYGAYCCE 297
Score = 43.4 bits (103), Expect = 8e-05
Identities = 9/38 (23%), Positives = 15/38 (39%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAF 396
L N IT L R++ + L+ N+I +
Sbjct: 127 LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164
Score = 43.1 bits (102), Expect = 9e-05
Identities = 9/46 (19%), Positives = 15/46 (32%), Gaps = 3/46 (6%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
N+I+ + + I L N IT L R++
Sbjct: 106 AANNNISRVSCSRGQG---KKNIYLANNKITMLRDLDEGCRSRVQY 148
Score = 42.7 bits (101), Expect = 1e-04
Identities = 8/44 (18%), Positives = 13/44 (29%), Gaps = 1/44 (2%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLK 48
L NN L + L + N F C + + +
Sbjct: 221 LRNNKLVLIEKA-LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263
Score = 41.5 bits (98), Expect = 3e-04
Identities = 9/47 (19%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
L N ++++ A + +L + L N + E + LR +
Sbjct: 41 LSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTL 85
Score = 37.3 bits (87), Expect = 0.007
Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 2/46 (4%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
L N + + P F + + I L N + + A + L
Sbjct: 198 LSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIEK-ALRFSQNLEH 241
Score = 36.9 bits (86), Expect = 0.008
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
L NN +T L D R++ L + N
Sbjct: 127 LANNKITMLRDLDEGCRSRVQYLDLKLN 154
Score = 35.0 bits (81), Expect = 0.032
Identities = 8/46 (17%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
L+ N I ++ + +L+ + L N + + P F + +
Sbjct: 176 LQYNFIYDVKGQVVF--AKLKTLDLSSNKLAFMGP-EFQSAAGVTW 218
Score = 35.0 bits (81), Expect = 0.034
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
L+ N L+ + A +L L +S N
Sbjct: 41 LSGNPLSQISAADLAPFTKLELLNLSSN 68
Score = 35.0 bits (81), Expect = 0.038
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 359 LEQNDITELPPKAFANY-KRLRRIRLEQNDITELPPKAF 396
L+ N+I + A L + L+ N I ++ +
Sbjct: 151 LKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV 189
Score = 33.8 bits (78), Expect = 0.080
Identities = 2/33 (6%), Positives = 11/33 (33%)
Query: 372 FANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
N R + ++ + + + + ++
Sbjct: 6 KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKE 38
Score = 32.7 bits (75), Expect = 0.17
Identities = 4/28 (14%), Positives = 13/28 (46%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
+ +++L + + ++ L +S N
Sbjct: 17 VTDSSLKQALASLRQSAWNVKELDLSGN 44
Score = 32.3 bits (74), Expect = 0.26
Identities = 9/63 (14%), Positives = 21/63 (33%), Gaps = 3/63 (4%)
Query: 343 SYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKA-FANYK 400
+++ F+ L N + + A + L L N + F+ +
Sbjct: 204 AFMGPEFQSAAGVTWISLRNNKLVLIEK-ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ 262
Query: 401 RLR 403
R++
Sbjct: 263 RVQ 265
Score = 31.5 bits (72), Expect = 0.46
Identities = 7/44 (15%), Positives = 14/44 (31%), Gaps = 5/44 (11%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRL 402
L N + EL + + N+I+ + K +
Sbjct: 87 LNNNYVQELLV-----GPSIETLHAANNNISRVSCSRGQGKKNI 125
Score = 30.0 bits (68), Expect = 1.3
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
L++N L D L LRTL ++ N
Sbjct: 65 LSSNVLYETLD--LESLSTLRTLDLNNN 90
Score = 29.6 bits (67), Expect = 1.8
Identities = 5/44 (11%), Positives = 13/44 (29%), Gaps = 10/44 (22%)
Query: 173 SLTSLTLNNNNLTYL----------PDGVFAELFRLRTLRISEN 206
++ + N N + + ++ L +S N
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN 44
Score = 29.6 bits (67), Expect = 1.8
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
L N + + V +L+TL +S N
Sbjct: 176 LQYNFIYDVKGQVV--FAKLKTLDLSSN 201
Score = 27.3 bits (61), Expect = 9.3
Identities = 6/29 (20%), Positives = 10/29 (34%), Gaps = 1/29 (3%)
Query: 5 LNNNNLTYLPDG-VFAELFRLRTLRISEN 32
L N + + + A L L + N
Sbjct: 151 LKLNEIDTVNFAELAASSDTLEHLNLQYN 179
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein
binding, plasma; 1.70A {Listeria monocytogenes} PDB:
3rfj_A
Length = 272
Score = 77.7 bits (192), Expect = 2e-16
Identities = 24/120 (20%), Positives = 43/120 (35%), Gaps = 22/120 (18%)
Query: 108 VDCREKGLNKVPILLPEATTELRLEQNDITELPPK--------------------AFANY 147
+ P T + L++ +T+ +
Sbjct: 3 ITVSTPIKQIFPDDAFAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYL 62
Query: 148 KRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENS 207
+R + L N++ ++ + L +LT L L N L LP+GVF +L L+ L + EN
Sbjct: 63 PNVRYLALGGNKLHDISA--LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ 120
Score = 77.0 bits (190), Expect = 4e-16
Identities = 28/134 (20%), Positives = 43/134 (32%), Gaps = 25/134 (18%)
Query: 96 SCPHPCRCADGIVDCREKGLNKVP-----------------------ILLPEATTELRLE 132
P + ++K + I L L
Sbjct: 12 IFPDDAFAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALG 71
Query: 133 QNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVF 192
N + ++ A L + L+ NQ+ + F L +L L L N L LPDGVF
Sbjct: 72 GNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVF 129
Query: 193 AELFRLRTLRISEN 206
+L L L ++ N
Sbjct: 130 DKLTNLTYLNLAHN 143
Score = 74.7 bits (184), Expect = 2e-15
Identities = 29/81 (35%), Positives = 39/81 (48%)
Query: 126 TTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLT 185
T L L N + LP F L+ + L +NQ+ + F L +LT L L +N L
Sbjct: 87 LTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ 146
Query: 186 YLPDGVFAELFRLRTLRISEN 206
LP GVF +L L L +S N
Sbjct: 147 SLPKGVFDKLTNLTELDLSYN 167
Score = 71.2 bits (175), Expect = 3e-14
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 3/102 (2%)
Query: 108 VDCREKGLNKVP---ILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVA 164
+ L +P EL L +N + LP F L ++L+ NQ+ +
Sbjct: 90 LILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLP 149
Query: 165 VDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISEN 206
F L +LT L L+ N L LP+GVF +L +L+ LR+ +N
Sbjct: 150 KGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191
Score = 66.6 bits (163), Expect = 1e-12
Identities = 35/122 (28%), Positives = 52/122 (42%), Gaps = 4/122 (3%)
Query: 108 VDCREKGLNKVPI---LLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVA 164
+ E L +P T L L N + LP F L +DLS NQ+ +
Sbjct: 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP 173
Query: 165 VDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCH-LSWLHRWLKR 223
F L L L L N L +PDGVF L L+ + + +N + C C + +L W+ +
Sbjct: 174 EGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINK 233
Query: 224 YP 225
+
Sbjct: 234 HS 235
Score = 46.5 bits (111), Expect = 5e-06
Identities = 19/119 (15%), Positives = 36/119 (30%), Gaps = 17/119 (14%)
Query: 294 SCPHPCRCADGIVDCREKGLNKVPILLPEATT--------ELTYMVSIDRVDKVLLYSYI 345
P + ++K + + ++ + I + + Y +
Sbjct: 12 IFPDDAFAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPN-VRYLAL 70
Query: 346 SNN-------FKRWTNRSR-RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAF 396
N K TN + L N + LP F L+ + L +N + LP F
Sbjct: 71 GGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVF 129
Score = 42.7 bits (101), Expect = 1e-04
Identities = 15/113 (13%), Positives = 33/113 (29%), Gaps = 16/113 (14%)
Query: 306 VDCREKGLNKVPILLPEATTE-------LTYMVSIDRVDKVLLYSYISNN------FKRW 352
+ P T + +T V+ + ++ + +++ +
Sbjct: 3 ITVSTPIKQIFPDDAFAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYL 62
Query: 353 TNRSR-RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
N L N + ++ A L + L N + LP F L+
Sbjct: 63 PNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113
Score = 35.8 bits (83), Expect = 0.018
Identities = 19/101 (18%), Positives = 30/101 (29%), Gaps = 23/101 (22%)
Query: 306 VDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNN---------FKRWTNRS 356
+ L +P + + T L + + N F + TN +
Sbjct: 90 LILTGNQLQSLPNGVFDKLTNLKEL-------------VLVENQLQSLPDGVFDKLTNLT 136
Query: 357 R-RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAF 396
L N + LP F L + L N + LP F
Sbjct: 137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVF 177
Score = 34.2 bits (79), Expect = 0.052
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
L N L LPDGVF +L L L ++ N
Sbjct: 116 LVENQLQSLPDGVFDKLTNLTYLNLAHN 143
Score = 34.2 bits (79), Expect = 0.054
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
L+ N L LP+GVF +L +L+ LR+ +N
Sbjct: 164 LSYNQLQSLPEGVFDKLTQLKDLRLYQN 191
Score = 32.7 bits (75), Expect = 0.16
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
L +N L LP GVF +L L L +S N
Sbjct: 140 LAHNQLQSLPKGVFDKLTNLTELDLSYN 167
Score = 32.7 bits (75), Expect = 0.16
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENS 33
L N L LP+GVF +L L+ L + EN
Sbjct: 92 LTGNQLQSLPNGVFDKLTNLKELVLVENQ 120
Score = 31.1 bits (71), Expect = 0.49
Identities = 24/107 (22%), Positives = 40/107 (37%), Gaps = 23/107 (21%)
Query: 306 VDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNN---------FKRWTNRS 356
+ E L +P + + T LTY+ +++N F + TN +
Sbjct: 114 LVLVENQLQSLPDGVFDKLTNLTYL-------------NLAHNQLQSLPKGVFDKLTNLT 160
Query: 357 R-RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRL 402
L N + LP F +L+ +RL QN + +P F L
Sbjct: 161 ELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 207
Score = 30.0 bits (68), Expect = 1.3
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCH-LSWLHRWLKRYP 51
L N L +PDGVF L L+ + + +N + C C + +L W+ ++
Sbjct: 188 LYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHS 235
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain,
protein binding, extra protein, structural genomics;
2.80A {Bacteroides thetaiotaomicron}
Length = 876
Score = 75.7 bits (186), Expect = 6e-15
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
L N + L AF +L + L NQI ++ D + L ++N L Y
Sbjct: 576 GLLDCVHNKVRHLE--AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY 633
Query: 187 LPDGVFAE-LFRLRTLRISENSF 208
+P+ A+ ++ + ++ S N
Sbjct: 634 IPNIFNAKSVYVMGSVDFSYNKI 656
Score = 72.6 bits (178), Expect = 6e-14
Identities = 17/94 (18%), Positives = 33/94 (35%), Gaps = 12/94 (12%)
Query: 127 TELRLEQNDITELPPKAFA-----NYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNN 181
+ N I + LS N+I K + F ++++ L+N
Sbjct: 647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSN 706
Query: 182 NNLTYLPD-------GVFAELFRLRTLRISENSF 208
N +T +P+ G + + L T+ + N
Sbjct: 707 NLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKL 740
Score = 71.1 bits (174), Expect = 2e-13
Identities = 15/88 (17%), Positives = 36/88 (40%), Gaps = 6/88 (6%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKV-AVDAFQGLKSLTSLTLNNNNLT 185
T+L+L+ N I E+P A ++ + S N++ + + + + + S+ + N +
Sbjct: 598 TDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIG 657
Query: 186 YLPDGVFA-----ELFRLRTLRISENSF 208
+ + T+ +S N
Sbjct: 658 SEGRNISCSMDDYKGINASTVTLSYNEI 685
Score = 68.4 bits (167), Expect = 2e-12
Identities = 17/97 (17%), Positives = 36/97 (37%), Gaps = 9/97 (9%)
Query: 127 TELRLEQNDITELP-------PKAFANYKRLRRIDLSKNQISKVAVD-AFQGLKSLTSLT 178
+ + L N +T +P + N L IDL N+++ ++ D L L+++
Sbjct: 700 STIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMD 759
Query: 179 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLS 215
++ N + P +L+ I +
Sbjct: 760 VSYNCFSSFPTQPL-NSSQLKAFGIRHQRDAEGNRIL 795
Score = 65.7 bits (160), Expect = 1e-11
Identities = 15/122 (12%), Positives = 35/122 (28%), Gaps = 30/122 (24%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSK------NQISKVAVDAFQGLKSLTSLTLN 180
+ + + N + P N +L+ + N+I + SL L +
Sbjct: 756 SNMDVSYNCFSSFPT-QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIG 814
Query: 181 NNNLTYLPDGVFAEL-----------------------FRLRTLRISENSFICDCHLSWL 217
+N++ + + + +L + L + I C +
Sbjct: 815 SNDIRKVDEKLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALGI 874
Query: 218 HR 219
R
Sbjct: 875 ER 876
Score = 65.7 bits (160), Expect = 1e-11
Identities = 16/108 (14%), Positives = 31/108 (28%), Gaps = 16/108 (14%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAV---------DAFQGLKSLTSL 177
T++ L P + L+ ++++ N+ A D +
Sbjct: 494 TDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIF 553
Query: 178 TLNNNNLTYLPDGV-FAELFRLRTLRISENSF-----ICDC-HLSWLH 218
+ NNL P ++ +L L N L+ L
Sbjct: 554 YMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLK 601
Score = 64.5 bits (157), Expect = 2e-11
Identities = 35/232 (15%), Positives = 63/232 (27%), Gaps = 62/232 (26%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSH 64
L +L L+ L +S L +
Sbjct: 330 LAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDE----ELTPDMSEERKHRIRM 385
Query: 65 IKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPE 124
+ LD + + D + +N+ P + P
Sbjct: 386 HYKKMFLDYDQRL----------------------------NLSDLLQDAINRNPEMKPI 417
Query: 125 AT--------TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAV----------- 165
T++ N IT + A +L+ I + + + +
Sbjct: 418 KKDSRISLKDTQIGNLTNRITFISK-AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDY 476
Query: 166 --------DAFQGLKSLTSLTL-NNNNLTYLPDGVFAELFRLRTLRISENSF 208
++ LK LT + L N N+T LPD +L L++L I+ N
Sbjct: 477 AKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLNIACNRG 527
Score = 59.1 bits (143), Expect = 1e-09
Identities = 12/103 (11%), Positives = 26/103 (25%), Gaps = 10/103 (9%)
Query: 116 NKVPILLPEA-TTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSL 174
+ + + E +++N K L ++L D L L
Sbjct: 458 SPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPEL 517
Query: 175 TSLTLNNNNLTYLPDGV---------FAELFRLRTLRISENSF 208
SL + N +++ + N+
Sbjct: 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560
Score = 53.7 bits (129), Expect = 6e-08
Identities = 11/74 (14%), Positives = 21/74 (28%)
Query: 134 NDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFA 193
+ + P N R+ + L+ DA L L L+ ++ T
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGD 368
Query: 194 ELFRLRTLRISENS 207
E ++
Sbjct: 369 EELTPDMSEERKHR 382
Score = 50.3 bits (120), Expect = 7e-07
Identities = 10/83 (12%), Positives = 21/83 (25%), Gaps = 1/83 (1%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAF-QGLKSLTSLTLNNNNLT 185
T L L P A L+ + + + + L S +
Sbjct: 326 TGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRM 385
Query: 186 YLPDGVFAELFRLRTLRISENSF 208
+ RL + +++
Sbjct: 386 HYKKMFLDYDQRLNLSDLLQDAI 408
Score = 41.4 bits (97), Expect = 5e-04
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAF 396
L N+I + P + FA + I L N +T +P +
Sbjct: 679 TLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSL 717
Score = 41.0 bits (96), Expect = 7e-04
Identities = 8/51 (15%), Positives = 13/51 (25%), Gaps = 5/51 (9%)
Query: 359 LEQNDITELPPKAFA-----NYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
N I + L N+I + P + FA +
Sbjct: 651 FSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPIST 701
Score = 39.9 bits (93), Expect = 0.001
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
N + L AF +L ++L+ N I E+P A ++
Sbjct: 580 CVHNKVRHLE--AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEG 623
Score = 38.7 bits (90), Expect = 0.003
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAF 396
L+ N I E+P A ++ + N + +P
Sbjct: 602 LDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFN 639
Score = 37.2 bits (86), Expect = 0.010
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSF 34
L+ N + P +FA + T+ +S N
Sbjct: 680 LSYNEIQKFPTELFATGSPISTIILSNNLM 709
Score = 36.8 bits (85), Expect = 0.015
Identities = 13/85 (15%), Positives = 23/85 (27%), Gaps = 4/85 (4%)
Query: 124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNN 183
EA T N+ + +D+ +Q +T L+L
Sbjct: 279 EALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPG----VDLDNNGRVTGLSLAGFG 334
Query: 184 LTYLPDGVFAELFRLRTLRISENSF 208
+L L+ L +S
Sbjct: 335 AKGRVPDAIGQLTELKVLSFGTHSE 359
Score = 36.4 bits (84), Expect = 0.016
Identities = 5/43 (11%), Positives = 11/43 (25%), Gaps = 2/43 (4%)
Query: 5 LNNNNLTYLPDGVFAEL--FRLRTLRISENSFICDCHLSWLHR 45
+ +N + + L + I C + R
Sbjct: 834 IADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALGIER 876
Score = 35.6 bits (82), Expect = 0.033
Identities = 8/58 (13%), Positives = 17/58 (29%)
Query: 115 LNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLK 172
+ KV L L + N + + Y L ++ + G++
Sbjct: 818 IRKVDEKLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALGIE 875
Score = 35.2 bits (81), Expect = 0.042
Identities = 5/46 (10%), Positives = 12/46 (26%), Gaps = 1/46 (2%)
Query: 359 LEQNDITELPPKAFA-NYKRLRRIRLEQNDITELPPKAFANYKRLR 403
N + +P A + + + N I + +
Sbjct: 626 FSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYK 671
Score = 35.2 bits (81), Expect = 0.043
Identities = 10/45 (22%), Positives = 16/45 (35%)
Query: 354 NRSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFAN 398
R E N I P L ++++ NDI ++ K
Sbjct: 784 RHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQ 828
Score = 34.9 bits (80), Expect = 0.052
Identities = 22/139 (15%), Positives = 42/139 (30%), Gaps = 12/139 (8%)
Query: 272 TDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMV 331
+ Y+ +++ E + ++D + VPI L E +
Sbjct: 219 VAYTTYSQSGIKRSELETQSVRGESF------TVIDNKLTKDANVPIQLKETAEYIKDYK 272
Query: 332 SIDRVDKVL------LYSYISNNFKRWTNRSRRLEQNDITELPPKAFANYKRLRRIRLEQ 385
++ + + L YS NN N + E + + P N R+ + L
Sbjct: 273 ALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAG 332
Query: 386 NDITELPPKAFANYKRLRR 404
P A L+
Sbjct: 333 FGAKGRVPDAIGQLTELKV 351
Score = 34.1 bits (78), Expect = 0.087
Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 3/47 (6%)
Query: 359 LEQNDITELPP-KAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
+ N++ E P + +L + N + L AF +L
Sbjct: 555 MGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE--AFGTNVKLTD 599
Score = 34.1 bits (78), Expect = 0.10
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSF 34
L+ N + +P+ A ++ L S N
Sbjct: 602 LDYNQIEEIPEDFCAFTDQVEGLGFSHNKL 631
Score = 32.5 bits (74), Expect = 0.26
Identities = 5/40 (12%), Positives = 8/40 (20%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFAN 398
L P A L+ + + T
Sbjct: 330 LAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDE 369
Score = 32.5 bits (74), Expect = 0.27
Identities = 12/53 (22%), Positives = 16/53 (30%), Gaps = 8/53 (15%)
Query: 359 LEQNDITELP-------PKAFANYKRLRRIRLEQNDITELPPK-AFANYKRLR 403
L N +T +P + N L I L N +T L L
Sbjct: 704 LSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLS 756
Score = 32.5 bits (74), Expect = 0.29
Identities = 7/41 (17%), Positives = 11/41 (26%), Gaps = 1/41 (2%)
Query: 362 NDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRL 402
N IT + A +L+ I + T
Sbjct: 435 NRITFISK-AIQRLTKLQIIYFANSPFTYDNIAVDWEDANS 474
Score = 32.2 bits (73), Expect = 0.34
Identities = 7/31 (22%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 5 LNNNNLTYLPDGVFAE-LFRLRTLRISENSF 34
++N L Y+P+ A+ ++ + ++ S N
Sbjct: 626 FSHNKLKYIPNIFNAKSVYVMGSVDFSYNKI 656
Score = 31.4 bits (71), Expect = 0.59
Identities = 11/31 (35%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 5 LNNNNLTYLPDGV-FAELFRLRTLRISENSF 34
L N LT L D L L + +S N F
Sbjct: 735 LRFNKLTSLSDDFRATTLPYLSNMDVSYNCF 765
Score = 30.6 bits (69), Expect = 0.98
Identities = 6/30 (20%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSF 34
+N + +L F +L L++ N
Sbjct: 580 CVHNKVRHLEA--FGTNVKLTDLKLDYNQI 607
Score = 30.6 bits (69), Expect = 1.2
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 7/37 (18%)
Query: 5 LNNNNLTYLPD-------GVFAELFRLRTLRISENSF 34
L+NN +T +P+ G + + L T+ + N
Sbjct: 704 LSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKL 740
Score = 29.8 bits (67), Expect = 1.8
Identities = 9/47 (19%), Positives = 14/47 (29%), Gaps = 7/47 (14%)
Query: 5 LNNNNLTYLPDGV-FAELFRLRTLRISENSF-----ICDC-HLSWLH 44
+ NNL P ++ +L L N L+ L
Sbjct: 555 MGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLK 601
Score = 29.5 bits (66), Expect = 2.2
Identities = 4/37 (10%), Positives = 10/37 (27%), Gaps = 1/37 (2%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLS 41
++ N + P +L+ I +
Sbjct: 760 VSYNCFSSFPTQPL-NSSQLKAFGIRHQRDAEGNRIL 795
Score = 29.1 bits (65), Expect = 3.0
Identities = 5/57 (8%), Positives = 15/57 (26%), Gaps = 10/57 (17%)
Query: 359 LEQNDITELP---------PKAFANYKRLRRIRLEQNDITELPP-KAFANYKRLRRM 405
+ N +++ + N++ E P + +L +
Sbjct: 522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLL 578
Score = 28.7 bits (64), Expect = 3.8
Identities = 4/35 (11%), Positives = 10/35 (28%), Gaps = 5/35 (14%)
Query: 5 LNNNNLTYLPDGVFA-----ELFRLRTLRISENSF 34
+ N + + + T+ +S N
Sbjct: 651 FSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEI 685
Score = 28.3 bits (63), Expect = 5.8
Identities = 8/29 (27%), Positives = 9/29 (31%), Gaps = 1/29 (3%)
Query: 6 NNNNLTYLPDGVFAELFRLRTLRISENSF 34
N L P G L L+I N
Sbjct: 791 GNRILRQWPTG-ITTCPSLIQLQIGSNDI 818
Score = 28.3 bits (63), Expect = 5.8
Identities = 8/51 (15%), Positives = 13/51 (25%), Gaps = 7/51 (13%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQ------NDITELPPKAFANYKRLR 403
+ N + P N +L+ + N I P L
Sbjct: 760 VSYNCFSSFPT-QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLI 809
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat
protein, structural genomi center for structural
genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Length = 197
Score = 70.4 bits (173), Expect = 2e-14
Identities = 16/85 (18%), Positives = 33/85 (38%), Gaps = 2/85 (2%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
+L + T P + L R+ + ++ + GL SLT L ++++
Sbjct: 69 KDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126
Query: 187 LPDGVFAELFRLRTLRISENSFICD 211
L ++ ++ +S N I D
Sbjct: 127 SILTKINTLPKVNSIDLSYNGAITD 151
Score = 59.2 bits (144), Expect = 2e-10
Identities = 14/81 (17%), Positives = 27/81 (33%), Gaps = 5/81 (6%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKN-QISKVAVDAFQGLKSLTSLTLNNNNLT 185
T L + + + ++ IDLS N I+ + + L L SL + + +
Sbjct: 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI--MPLKTLPELKSLNIQFDGVH 172
Query: 186 YLPDGVFAELFRLRTLRISEN 206
+ +L L
Sbjct: 173 DYRG--IEDFPKLNQLYAFSQ 191
Score = 50.7 bits (122), Expect = 1e-07
Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 7/83 (8%)
Query: 124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNN 183
+A L Q+ + A L I L+ ++ + + ++ LT+NN +
Sbjct: 23 KAYLNGLLGQSSTANITE---AQMNSLTYITLANINVTDL--TGIEYAHNIKDLTINNIH 77
Query: 184 LTYLPDGVFAELFRLRTLRISEN 206
T + L L LRI
Sbjct: 78 ATNY--NPISGLSNLERLRIMGK 98
Score = 46.5 bits (111), Expect = 3e-06
Identities = 8/60 (13%), Positives = 20/60 (33%), Gaps = 5/60 (8%)
Query: 127 TELRLEQND-ITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLT 185
+ L N IT++ P L+ +++ + + + L L + +
Sbjct: 139 NSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHDY--RGIEDFPKLNQLYAFSQTIG 194
Score = 39.9 bits (94), Expect = 5e-04
Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 8/74 (10%)
Query: 133 QNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVF 192
D +P F Y L ++ + + + SLT +TL N N+T L
Sbjct: 11 SQDNVNIPDSTFKAYLNG---LLGQSSTANITEA---QMNSLTYITLANINVTDLTG--I 62
Query: 193 AELFRLRTLRISEN 206
++ L I+
Sbjct: 63 EYAHNIKDLTINNI 76
Score = 34.5 bits (80), Expect = 0.035
Identities = 3/45 (6%), Positives = 12/45 (26%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLR 403
+ D+T + L + + + + ++
Sbjct: 95 IMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVN 139
Score = 27.6 bits (62), Expect = 6.5
Identities = 5/33 (15%), Positives = 14/33 (42%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFICD 37
++++ L ++ ++ +S N I D
Sbjct: 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITD 151
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding,
structural genomics, center for structural genomics,
JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Length = 636
Score = 72.0 bits (177), Expect = 9e-14
Identities = 18/83 (21%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
L N + P AF + +L ++L+ NQI+++ + + + +L+ +N L Y
Sbjct: 333 GMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY 391
Query: 187 LPDGVFAE-LFRLRTLRISENSF 208
+P+ A+ + + + S N
Sbjct: 392 IPNIFDAKSVSVMSAIDFSYNEI 414
Score = 67.4 bits (165), Expect = 2e-12
Identities = 25/111 (22%), Positives = 40/111 (36%), Gaps = 20/111 (18%)
Query: 127 TELRLEQNDITELPPKAFA-------NYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTL 179
+ + N+I + K F + I+LS NQISK + F L+S+ L
Sbjct: 405 SAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINL 464
Query: 180 NNNNLTYLPDGV-------FAELFRLRTLRISENSF------ICDCHLSWL 217
N LT +P F + L ++ + N L +L
Sbjct: 465 MGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYL 515
Score = 66.6 bits (163), Expect = 4e-12
Identities = 12/90 (13%), Positives = 33/90 (36%), Gaps = 8/90 (8%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQG-LKSLTSLTLNNNNLT 185
L L N ITE+P +++ + + N++ + + ++++ + N +
Sbjct: 356 ASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIG 415
Query: 186 YLPDGVFAE-------LFRLRTLRISENSF 208
+ F + ++ +S N
Sbjct: 416 SVDGKNFDPLDPTPFKGINVSSINLSNNQI 445
Score = 64.3 bits (157), Expect = 3e-11
Identities = 21/97 (21%), Positives = 36/97 (37%), Gaps = 9/97 (9%)
Query: 127 TELRLEQNDITELP-------PKAFANYKRLRRIDLSKNQISKVAVD-AFQGLKSLTSLT 178
+ + L N +TE+P + F N L IDL N+++K++ D L L +
Sbjct: 460 SSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGID 519
Query: 179 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLS 215
L+ N+ + P L+ I
Sbjct: 520 LSYNSFSKFPTQPL-NSSTLKGFGIRNQRDAQGNRTL 555
Score = 58.9 bits (143), Expect = 1e-09
Identities = 14/91 (15%), Positives = 28/91 (30%), Gaps = 10/91 (10%)
Query: 127 TELRLEQNDITELP--------PKAFANYKRLRRIDLSKNQISKVAV-DAFQGLKSLTSL 177
+ + N ++++ I + N + V + Q +K L L
Sbjct: 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGML 335
Query: 178 TLNNNNLTYLPDGVFAELFRLRTLRISENSF 208
N L F +L +L ++ N
Sbjct: 336 ECLYNQLEGKLPA-FGSEIKLASLNLAYNQI 365
Score = 54.3 bits (131), Expect = 4e-08
Identities = 12/93 (12%), Positives = 26/93 (27%), Gaps = 5/93 (5%)
Query: 129 LRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLP 188
+ N P+ L ++ + N I KV +++ L + +N +
Sbjct: 547 RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI---TPNISVLDIKDNPNISID 603
Query: 189 DGVFAELFRLRTLRISENSF--ICDCHLSWLHR 219
+ + I C + R
Sbjct: 604 LSYVCPYIEAGMYMLFYDKTQDIRGCDALDIKR 636
Score = 52.4 bits (126), Expect = 1e-07
Identities = 29/230 (12%), Positives = 66/230 (28%), Gaps = 56/230 (24%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLH-----RWLKRYPRLGLYTKC 59
L + +L L L + + + L ++ ++ ++ +
Sbjct: 88 LEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQK 147
Query: 60 FAPSHIKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVP 119
+ ++ D+ + D I ++ K
Sbjct: 148 TFVDYDPREDFSDLIK-----------------------------DCINSDPQQKSIKKS 178
Query: 120 ILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAV-------------- 165
+ T++ N+IT + A +LR+ + + +
Sbjct: 179 SRITLKDTQIGQLSNNITFVSK-AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQ 237
Query: 166 -----DAFQGLKSLTSLTL-NNNNLTYLPDGVFAELFRLRTLRISENSFI 209
+ LK LT + + N NLT LP L ++ + ++ N I
Sbjct: 238 YKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLINVACNRGI 286
Score = 50.0 bits (120), Expect = 8e-07
Identities = 11/83 (13%), Positives = 21/83 (25%), Gaps = 1/83 (1%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAF-QGLKSLTSLTLNNNNLT 185
T L LE + P A L + L + +G+ + S
Sbjct: 84 TGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRM 143
Query: 186 YLPDGVFAELFRLRTLRISENSF 208
+ R + ++
Sbjct: 144 HYQKTFVDYDPREDFSDLIKDCI 166
Score = 50.0 bits (120), Expect = 9e-07
Identities = 11/91 (12%), Positives = 28/91 (30%), Gaps = 9/91 (9%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQG--------LKSLTSLT 178
T++ + P ++ I+++ N+ + + +
Sbjct: 252 TDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIY 311
Query: 179 LNNNNLTYLP-DGVFAELFRLRTLRISENSF 208
+ NNL P + ++ +L L N
Sbjct: 312 IGYNNLKTFPVETSLQKMKKLGMLECLYNQL 342
Score = 49.3 bits (118), Expect = 1e-06
Identities = 11/71 (15%), Positives = 25/71 (35%), Gaps = 3/71 (4%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
T+L++ NDI ++ K N + +D+ N + + L +
Sbjct: 569 TQLQIGSNDIRKVNEKITPN---ISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQD 625
Query: 187 LPDGVFAELFR 197
+ ++ R
Sbjct: 626 IRGCDALDIKR 636
Score = 43.1 bits (102), Expect = 1e-04
Identities = 10/74 (13%), Positives = 20/74 (27%), Gaps = 1/74 (1%)
Query: 137 TELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVF-AEL 195
P + + R+ + L S DA L L L L ++ +
Sbjct: 70 GAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGI 129
Query: 196 FRLRTLRISENSFI 209
+ + +
Sbjct: 130 SANMSDEQKQKMRM 143
Score = 38.5 bits (90), Expect = 0.003
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFAN 398
L N I++ P + F+ L I L N +TE+P + +
Sbjct: 439 NLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKD 479
Score = 38.5 bits (90), Expect = 0.004
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
N + P AF + +L + L N ITE+P +++
Sbjct: 337 CLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVEN 381
Score = 38.1 bits (89), Expect = 0.005
Identities = 9/39 (23%), Positives = 16/39 (41%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFA 397
L N ITE+P +++ + N + +P A
Sbjct: 360 LAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDA 398
Score = 36.9 bits (86), Expect = 0.012
Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 7/54 (12%)
Query: 358 RLEQNDITELPPKAFA-------NYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
N+I + K F + I L N I++ P + F+ L
Sbjct: 408 DFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSS 461
Score = 35.4 bits (82), Expect = 0.030
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSF 34
L+NN ++ P +F+ L ++ + N
Sbjct: 440 LSNNQISKFPKELFSTGSPLSSINLMGNML 469
Score = 34.6 bits (80), Expect = 0.050
Identities = 6/55 (10%), Positives = 15/55 (27%), Gaps = 4/55 (7%)
Query: 122 LPEAT----TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLK 172
+ E + L ++ N + Y L ++ + +K
Sbjct: 581 VNEKITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALDIK 635
Score = 32.7 bits (75), Expect = 0.25
Identities = 7/45 (15%), Positives = 14/45 (31%)
Query: 171 LKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLS 215
+T L+L + +L L L + + + L
Sbjct: 80 NGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLF 124
Score = 32.7 bits (75), Expect = 0.26
Identities = 9/42 (21%), Positives = 17/42 (40%)
Query: 357 RRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFAN 398
R + N P+ L ++++ NDI ++ K N
Sbjct: 547 RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPN 588
Score = 31.9 bits (73), Expect = 0.40
Identities = 6/30 (20%), Positives = 11/30 (36%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSF 34
L N +T +P ++ L + N
Sbjct: 360 LAYNQITEIPANFCGFTEQVENLSFAHNKL 389
Score = 31.9 bits (73), Expect = 0.45
Identities = 9/47 (19%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Query: 359 LEQNDITELP-PKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
+ N++ P + K+L + N + P AF + +L
Sbjct: 312 IGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLAS 357
Score = 30.8 bits (70), Expect = 0.98
Identities = 13/55 (23%), Positives = 18/55 (32%), Gaps = 2/55 (3%)
Query: 341 LYSYISNNFKRWTN-RSRRLEQNDITELPPK-AFANYKRLRRIRLEQNDITELPP 393
+ NFK S L N +T+L L I L N ++ P
Sbjct: 476 SLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPT 530
Score = 30.8 bits (70), Expect = 1.0
Identities = 7/31 (22%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 5 LNNNNLTYLPDGVFAE-LFRLRTLRISENSF 34
+N L Y+P+ A+ + + + S N
Sbjct: 384 FAHNKLKYIPNIFDAKSVSVMSAIDFSYNEI 414
Score = 29.6 bits (67), Expect = 2.0
Identities = 6/30 (20%), Positives = 10/30 (33%), Gaps = 1/30 (3%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSF 34
N L F +L +L ++ N
Sbjct: 337 CLYNQLEGKLPA-FGSEIKLASLNLAYNQI 365
Score = 29.2 bits (66), Expect = 3.0
Identities = 5/32 (15%), Positives = 14/32 (43%), Gaps = 3/32 (9%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFIC 36
+ +N++ + + + + L I +N I
Sbjct: 573 IGSNDIRKVNEKITP---NISVLDIKDNPNIS 601
Score = 28.9 bits (65), Expect = 3.2
Identities = 5/37 (13%), Positives = 9/37 (24%), Gaps = 1/37 (2%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLS 41
L+ N+ + P L+ I
Sbjct: 520 LSYNSFSKFPTQPL-NSSTLKGFGIRNQRDAQGNRTL 555
Score = 28.9 bits (65), Expect = 3.4
Identities = 10/52 (19%), Positives = 16/52 (30%), Gaps = 13/52 (25%)
Query: 5 LNNNNLTYLPDGV-------FAELFRLRTLRISENSF------ICDCHLSWL 43
L N LT +P F + L ++ + N L +L
Sbjct: 464 LMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYL 515
>4fmz_A Internalin; leucine rich repeat, structural genomic center for
structural genomics, JCSG, protein structure INI
PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes
serotype 4B}
Length = 347
Score = 69.5 bits (171), Expect = 2e-13
Identities = 18/80 (22%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
L + N I+++ N +L + L+ NQ+ ++ GL +LT+L L+ N++T
Sbjct: 268 KMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325
Query: 187 LPDGVFAELFRLRTLRISEN 206
+ A L ++ + +
Sbjct: 326 IRP--LASLSKMDSADFANQ 343
Score = 68.7 bits (169), Expect = 4e-13
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
L L N IT++ P +N +L + + N+I+ + A Q L +L L LN +N++
Sbjct: 69 EYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISD 124
Query: 187 LPDGVFAELFRLRTLRISENSFI 209
+ A L ++ +L + N +
Sbjct: 125 ISP--LANLTKMYSLNLGANHNL 145
Score = 67.6 bits (166), Expect = 1e-12
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
L + ++ + ++ P AN L + L+ NQI + L SL T N +T
Sbjct: 158 NYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI--SPLASLTSLHYFTAYVNQITD 213
Query: 187 LPDGVFAELFRLRTLRISEN 206
+ A + RL +L+I N
Sbjct: 214 ITP--VANMTRLNSLKIGNN 231
Score = 65.6 bits (161), Expect = 4e-12
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
N IT++ P AN RL + + N+I+ + L LT L + N ++
Sbjct: 202 HYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDL--SPLANLSQLTWLEIGTNQISD 257
Query: 187 LPDGVFAELFRLRTLRISEN 206
+ +L +L+ L + N
Sbjct: 258 IN--AVKDLTKLKMLNVGSN 275
Score = 65.3 bits (160), Expect = 7e-12
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
L++ N IT+L P AN +L +++ NQIS + +A + L L L + +N ++
Sbjct: 224 NSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD 279
Query: 187 LPDGVFAELFRLRTLRISEN 206
+ L +L +L ++ N
Sbjct: 280 ISV--LNNLSQLNSLFLNNN 297
Score = 64.5 bits (158), Expect = 1e-11
Identities = 17/80 (21%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
EL L +++I+++ P AN ++ ++L N + + L LT+ + +
Sbjct: 113 RELYLNEDNISDISP--LANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKD 169
Query: 187 LPDGVFAELFRLRTLRISEN 206
+ A L L +L ++ N
Sbjct: 170 VTP--IANLTDLYSLSLNYN 187
Score = 61.8 bits (151), Expect = 9e-11
Identities = 14/81 (17%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
L++ +T++ + + ++ ++ +++ + + L +L L LN N +T
Sbjct: 25 IRAVLQKASVTDVVT--QEELESITKLVVAGEKVASI--QGIEYLTNLEYLNLNGNQITD 80
Query: 187 LPDGVFAELFRLRTLRISENS 207
+ + L +L L I N
Sbjct: 81 ISP--LSNLVKLTNLYIGTNK 99
Score = 60.6 bits (148), Expect = 2e-10
Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 2/59 (3%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLT 185
L L N + + L + LS+N I+ + L + S N +
Sbjct: 290 NSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI--RPLASLSKMDSADFANQVIK 346
Score = 57.6 bits (140), Expect = 2e-09
Identities = 16/80 (20%), Positives = 29/80 (36%), Gaps = 6/80 (7%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
L I ++ P A+ R L K ++ V + L+S+T L + +
Sbjct: 3 ATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDV--VTQEELESITKLVVAGEKVAS 58
Query: 187 LPDGVFAELFRLRTLRISEN 206
+ L L L ++ N
Sbjct: 59 IQG--IEYLTNLEYLNLNGN 76
Score = 39.4 bits (93), Expect = 0.002
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISK 162
T L L QN IT++ P A+ ++ D + I K
Sbjct: 314 TTLFLSQNHITDIRP--LASLSKMDSADFANQVIKK 347
Score = 37.5 bits (88), Expect = 0.006
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
L N + + L + L QN IT++ P A+ ++
Sbjct: 294 LNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDS 337
Score = 36.4 bits (85), Expect = 0.015
Identities = 11/68 (16%), Positives = 20/68 (29%), Gaps = 10/68 (14%)
Query: 344 YISNN-------FKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKA 395
I N K T + + N I+++ N +L + L N + +
Sbjct: 249 EIGTNQISDINAVKDLTKLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDMEV 306
Query: 396 FANYKRLR 403
L
Sbjct: 307 IGGLTNLT 314
Score = 32.9 bits (76), Expect = 0.18
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLR 403
L N IT++ P +N +L + + N IT++ N LR
Sbjct: 73 LNGNQITDISP--LSNLVKLTNLYIGTNKITDISA--LQNLTNLR 113
Score = 32.5 bits (75), Expect = 0.20
Identities = 11/45 (24%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLR 403
+ N IT++ N LR + L +++I+++ P AN ++
Sbjct: 95 IGTNKITDISA--LQNLTNLRELYLNEDNISDISP--LANLTKMY 135
Score = 31.7 bits (73), Expect = 0.39
Identities = 8/47 (17%), Positives = 17/47 (36%), Gaps = 4/47 (8%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
+ + + L + L N IT++ P +N +L +
Sbjct: 51 VAGEKVASIQG--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNL 93
Score = 31.0 bits (71), Expect = 0.64
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
N IT++ P AN RL +++ N IT+L P AN +L
Sbjct: 206 AYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTW 247
Score = 31.0 bits (71), Expect = 0.66
Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLR 403
+ N IT+L P AN +L + + N I+++ + +L+
Sbjct: 228 IGNNKITDLSP--LANLSQLTWLEIGTNQISDINA--VKDLTKLK 268
Score = 31.0 bits (71), Expect = 0.68
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
LNNN L V L L TL +S+N
Sbjct: 294 LNNNQLGNEDMEVIGGLTNLTTLFLSQN 321
Score = 30.6 bits (70), Expect = 0.77
Identities = 3/45 (6%), Positives = 15/45 (33%), Gaps = 4/45 (8%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLR 403
L++ +T++ + + ++ + + + L
Sbjct: 29 LQKASVTDVVT--QEELESITKLVVAGEKVASIQG--IEYLTNLE 69
Score = 30.2 bits (69), Expect = 1.1
Identities = 8/36 (22%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPP 393
+ ++ + ++ P AN L + L N I ++ P
Sbjct: 161 TVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP 194
Score = 29.8 bits (68), Expect = 1.5
Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLR 403
L N +N L + + ++ + ++ P AN L
Sbjct: 139 LGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLY 180
Score = 29.0 bits (66), Expect = 2.9
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLR 403
L N I ++ P A+ L N IT++ P AN RL
Sbjct: 184 LNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLN 224
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis,
effector protein, virulence factor, toxin; 2.10A
{Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Length = 454
Score = 67.3 bits (165), Expect = 2e-12
Identities = 24/94 (25%), Positives = 35/94 (37%), Gaps = 9/94 (9%)
Query: 115 LNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSL 174
L + L P L + N + +LP N L+ ID+ N + K+ SL
Sbjct: 123 LKALSDL-PPLLEYLGVSNNQLEKLPE--LQNSSFLKIIDVDNNSLKKL----PDLPPSL 175
Query: 175 TSLTLNNNNLTYLPDGVFAELFRLRTLRISENSF 208
+ NN L LP+ L L + NS
Sbjct: 176 EFIAAGNNQLEELPE--LQNLPFLTAIYADNNSL 207
Score = 61.6 bits (150), Expect = 2e-10
Identities = 46/214 (21%), Positives = 67/214 (31%), Gaps = 56/214 (26%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSF------ICDC-HLSWLHRWLKRYPRLGLYT 57
LNN L+ LP+ L +L S NS L + LK L
Sbjct: 78 LNNLGLSSLPE----LPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDL---- 129
Query: 58 KCFAPSHIK-----GQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCRE 112
P ++ + +P E + S ++ +D
Sbjct: 130 ----PPLLEYLGVSNNQLEKLP--ELQNSSFLKI---------------------IDVDN 162
Query: 113 KGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLK 172
L K+P L P + + N + ELP N L I N + K+
Sbjct: 163 NSLKKLPDLPP-SLEFIAAGNNQLEELPE--LQNLPFLTAIYADNNSLKKL----PDLPL 215
Query: 173 SLTSLTLNNNNLTYLPDGVFAELFRLRTLRISEN 206
SL S+ NN L LP+ L L T+ N
Sbjct: 216 SLESIVAGNNILEELPE--LQNLPFLTTIYADNN 247
Score = 56.5 bits (137), Expect = 6e-09
Identities = 23/122 (18%), Positives = 42/122 (34%), Gaps = 28/122 (22%)
Query: 106 GIVDCREKGLNKVPILLPEATTELRLEQNDITELP-------------------PKAFAN 146
G + RE ++++ L EL L ++ LP P+ +
Sbjct: 53 GNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLTELPELPQS 112
Query: 147 YKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISEN 206
K L + + +S + L L ++NN L LP+ L+ + + N
Sbjct: 113 LKSLLVDNNNLKALSDL-------PPLLEYLGVSNNQLEKLPE--LQNSSFLKIIDVDNN 163
Query: 207 SF 208
S
Sbjct: 164 SL 165
Score = 56.2 bits (136), Expect = 8e-09
Identities = 29/120 (24%), Positives = 42/120 (35%), Gaps = 25/120 (20%)
Query: 107 IVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKV--- 163
I+D L K+P L P + + N + ELP N L I N + K+
Sbjct: 157 IIDVDNNSLKKLPDLPP-SLEFIAAGNNQLEELPE--LQNLPFLTAIYADNNSLKKLPDL 213
Query: 164 ---------------AVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSF 208
+ Q L LT++ +NN L LPD L L + +N
Sbjct: 214 PLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNYL 269
Score = 53.5 bits (129), Expect = 6e-08
Identities = 26/94 (27%), Positives = 38/94 (40%), Gaps = 13/94 (13%)
Query: 115 LNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSL 174
L +P LP++ T L + +N + L L ++ S N+I + SL
Sbjct: 269 LTDLP-ELPQSLTFLDVSENIFSGLSELP----PNLYYLNASSNEIRSL----CDLPPSL 319
Query: 175 TSLTLNNNNLTYLPDGVFAELFRLRTLRISENSF 208
L ++NN L LP A RL L S N
Sbjct: 320 EELNVSNNKLIELP----ALPPRLERLIASFNHL 349
Score = 53.5 bits (129), Expect = 6e-08
Identities = 34/204 (16%), Positives = 57/204 (27%), Gaps = 56/204 (27%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSH 64
NN L LP+ L L T+ N L L
Sbjct: 222 AGNNILEELPE--LQNLPFLTTIYADNN------LLKTLPDLP---------------PS 258
Query: 65 IKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPE 124
++ N+ D + P P +D E + + LP
Sbjct: 259 LEALNVRDNYLTDL----------------PELPQSLT----FLDVSENIFSGLSE-LPP 297
Query: 125 ATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNL 184
L N+I L L +++S N++ ++ L L + N+L
Sbjct: 298 NLYYLNASSNEIRSLCDLP----PSLEELNVSNNKLIEL----PALPPRLERLIASFNHL 349
Query: 185 TYLPDGVFAELFRLRTLRISENSF 208
+P+ L+ L + N
Sbjct: 350 AEVPE----LPQNLKQLHVEYNPL 369
Score = 53.1 bits (128), Expect = 7e-08
Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 10/82 (12%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
+ N + ELP N L I N + + SL +L + +N LT
Sbjct: 218 ESIVAGNNILEELP--ELQNLPFLTTIYADNNLLKTL----PDLPPSLEALNVRDNYLTD 271
Query: 187 LPDGVFAELFRLRTLRISENSF 208
LP+ L L +SEN F
Sbjct: 272 LPE----LPQSLTFLDVSENIF 289
Score = 50.0 bits (120), Expect = 7e-07
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 12/80 (15%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
EL + N + ELP RL R+ S N +++V + ++L L + N L
Sbjct: 320 EELNVSNNKLIELPA----LPPRLERLIASFNHLAEVP----ELPQNLKQLHVEYNPLRE 371
Query: 187 LPDGVFAELFRLRTLRISEN 206
PD + LR++ +
Sbjct: 372 FPD----IPESVEDLRMNSH 387
Score = 48.8 bits (117), Expect = 2e-06
Identities = 16/94 (17%), Positives = 37/94 (39%), Gaps = 15/94 (15%)
Query: 116 NKVPILLPEATTELR-LEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSL 174
++ P E R + + + + + + ++L+ +S + + L
Sbjct: 44 SEWERNAPPGNGEQREMAVSRLRDCLDR------QAHELELNNLGLSSL----PELPPHL 93
Query: 175 TSLTLNNNNLTYLPDGVFAELFRLRTLRISENSF 208
SL + N+LT LP+ L++L + N+
Sbjct: 94 ESLVASCNSLTELPE----LPQSLKSLLVDNNNL 123
Score = 48.5 bits (116), Expect = 2e-06
Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 18/93 (19%)
Query: 128 ELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGL-------------KSL 174
E +++TE+P +A N K + ++ + A +
Sbjct: 15 EPLRHSSNLTEMPVEAE-NVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQA 73
Query: 175 TSLTLNNNNLTYLPDGVFAELFRLRTLRISENS 207
L LNN L+ LP+ L +L S NS
Sbjct: 74 HELELNNLGLSSLPE----LPPHLESLVASCNS 102
Score = 41.5 bits (98), Expect = 4e-04
Identities = 11/95 (11%), Positives = 30/95 (31%), Gaps = 19/95 (20%)
Query: 127 TELRLEQNDITELPP---------------KAFANYKRLRRIDLSKNQISKVAVDAFQGL 171
+L +E N + E P + + L+++ + N + +
Sbjct: 360 KQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREF----PDIP 415
Query: 172 KSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISEN 206
+S+ L +N+ + + +L +
Sbjct: 416 ESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHH 450
Score = 39.6 bits (93), Expect = 0.001
Identities = 9/65 (13%), Positives = 25/65 (38%), Gaps = 4/65 (6%)
Query: 122 LPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNN 181
LP+ +L +E N + E P + + + ++ ++ A + L +
Sbjct: 394 LPQNLKQLHVETNPLREFPD----IPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEH 449
Query: 182 NNLTY 186
++ +
Sbjct: 450 HHHHH 454
Score = 32.3 bits (74), Expect = 0.33
Identities = 10/68 (14%), Positives = 25/68 (36%), Gaps = 2/68 (2%)
Query: 139 LPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRL 198
+ P+ +N L+ + ++++ V+A +KS T + E +
Sbjct: 3 INPRNVSN-TFLQEPLRHSSNLTEMPVEAEN-VKSKTEYYNAWSEWERNAPPGNGEQREM 60
Query: 199 RTLRISEN 206
R+ +
Sbjct: 61 AVSRLRDC 68
Score = 30.7 bits (70), Expect = 0.94
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPP 393
N + ELP N L I + N + +LP
Sbjct: 180 AGNNQLEELPE--LQNLPFLTAIYADNNSLKKLPD 212
Score = 30.0 bits (68), Expect = 1.6
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPP 393
+ N + +LP N L+ I ++ N + +LP
Sbjct: 138 VSNNQLEKLPE--LQNSSFLKIIDVDNNSLKKLPD 170
Score = 29.6 bits (67), Expect = 2.1
Identities = 9/31 (29%), Positives = 11/31 (35%), Gaps = 2/31 (6%)
Query: 4 TLNNNNLTYLPDGVFAELFRLRTLRISENSF 34
NN L LP+ L L + NS
Sbjct: 179 AAGNNQLEELPE--LQNLPFLTAIYADNNSL 207
Score = 29.2 bits (66), Expect = 2.8
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPK 394
N +TELP + + K L +++LPP
Sbjct: 97 VASCNSLTELP-ELPQSLKSLLVDNNNLKALSDLPPL 132
Score = 28.8 bits (65), Expect = 3.8
Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPP 393
N + ELP N L I + N + LP
Sbjct: 222 AGNNILEELP--ELQNLPFLTTIYADNNLLKTLPD 254
Score = 28.4 bits (64), Expect = 4.2
Identities = 7/47 (14%), Positives = 16/47 (34%), Gaps = 4/47 (8%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
+E N + E P + + +R+ + + A +L
Sbjct: 403 VETNPLREFPD----IPESVEDLRMNSERVVDPYEFAHETTDKLEDD 445
Score = 27.7 bits (62), Expect = 7.5
Identities = 6/30 (20%), Positives = 10/30 (33%), Gaps = 4/30 (13%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSF 34
+ N L PD + LR++
Sbjct: 403 VETNPLREFPD----IPESVEDLRMNSERV 428
Score = 27.3 bits (61), Expect = 9.6
Identities = 7/44 (15%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRL 402
+++TE+P +A N K ++ P + +
Sbjct: 18 RHSSNLTEMPVEAE-NVKSKTEYYNAWSEWERNAPPGNGEQREM 60
Score = 27.3 bits (61), Expect = 9.9
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 4/35 (11%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPP 393
L ++ LP L + N +TELP
Sbjct: 78 LNNLGLSSLPE----LPPHLESLVASCNSLTELPE 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 66.7 bits (162), Expect = 4e-12
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
L LE N I+++ + +L + L N+I+ + L L +L+L +N ++
Sbjct: 112 KSLSLEHNGISDING--LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD 167
Query: 187 LPDGVFAELFRLRTLRISEN 206
+ A L +L+ L +S+N
Sbjct: 168 IVP--LAGLTKLQNLYLSKN 185
Score = 62.8 bits (152), Expect = 8e-11
Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 8/93 (8%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
L L N IT++ + +L + L NQIS + GL L +L L+ N+++
Sbjct: 134 ESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDI--VPLAGLTKLQNLYLSKNHISD 189
Query: 187 LPDGVFAELFRLRTLRISENSF--ICDCHLSWL 217
L A L L L + H S L
Sbjct: 190 LRA--LAGLKNLDVLELFSQECLNKPINHQSNL 220
Score = 61.7 bits (149), Expect = 2e-10
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
T+L L N +T++ P N K L + L +N+I + + + LK L SL+L +N ++
Sbjct: 68 TKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKSLSLEHNGISD 123
Query: 187 LPDGVFAELFRLRTLRISEN 206
+ L +L +L + N
Sbjct: 124 ING--LVHLPQLESLYLGNN 141
Score = 59.0 bits (142), Expect = 1e-09
Identities = 15/80 (18%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
++ +DI + + ++ L+ N+++ + LK+L L L+ N +
Sbjct: 46 DQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTD--IKPLTNLKNLGWLFLDENKIKD 101
Query: 187 LPDGVFAELFRLRTLRISEN 206
L +L +L++L + N
Sbjct: 102 LSS--LKDLKKLKSLSLEHN 119
Score = 57.0 bits (137), Expect = 5e-09
Identities = 12/80 (15%), Positives = 28/80 (35%), Gaps = 6/80 (7%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
E I ++ P + + +L K ++ L S+ + NN+++
Sbjct: 2 GETITVSTPIKQIFP--DDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIKS 57
Query: 187 LPDGVFAELFRLRTLRISEN 206
+ L + L ++ N
Sbjct: 58 VQG--IQYLPNVTKLFLNGN 75
Score = 48.2 bits (114), Expect = 3e-06
Identities = 15/136 (11%), Positives = 44/136 (32%), Gaps = 9/136 (6%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
L L +N I++L A K L ++L + ++ L ++ + +L
Sbjct: 178 QNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT 235
Query: 187 LPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILD 246
+ ++ + + +S++ + Q + +
Sbjct: 236 PE--IISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARF-----HGRVTQPLKE 288
Query: 247 IPEHEFKCSGSSMETR 262
+ + G+ ++T+
Sbjct: 289 VYTVSYDVDGTVIKTK 304
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell
WALL attached, leucine rich repeat; 1.5A {Listeria
monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A*
1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Length = 466
Score = 66.1 bits (162), Expect = 6e-12
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
T+L L N I+ L P + +L + L NQIS + GL +LT+L LN N L
Sbjct: 246 TDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI--SPLAGLTALTNLELNENQLED 301
Query: 187 LPDGVFAELFRLRTLRISEN 206
+ + L L L + N
Sbjct: 302 ISP--ISNLKNLTYLTLYFN 319
Score = 65.8 bits (161), Expect = 8e-12
Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 6/80 (7%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
T L L +N + ++ P +N K L + L N IS + L L L NN ++
Sbjct: 290 TNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI--SPVSSLTKLQRLFFYNNKVSD 345
Query: 187 LPDGVFAELFRLRTLRISEN 206
+ A L + L N
Sbjct: 346 VSS--LANLTNINWLSAGHN 363
Score = 65.4 bits (160), Expect = 9e-12
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
L N I+++ P L + L+ NQ+ + L +LT L L NN ++
Sbjct: 202 ESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISN 257
Query: 187 LPDGVFAELFRLRTLRISEN 206
L + L +L L++ N
Sbjct: 258 LAP--LSGLTKLTELKLGAN 275
Score = 61.5 bits (150), Expect = 2e-10
Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
++ + N I ++ P AN L + L NQI+ + D + L +L L L++N ++
Sbjct: 93 VDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISD 148
Query: 187 LPDGVFAELFRLRTLRISEN 206
+ + L L+ L
Sbjct: 149 ISA--LSGLTSLQQLSFGNQ 166
Score = 61.5 bits (150), Expect = 2e-10
Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 4/89 (4%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
L N ++++ AN + + NQIS + L +T L LN+ T
Sbjct: 334 QRLFFYNNKVSDVSS--LANLTNINWLSAGHNQISDL--TPLANLTRITQLGLNDQAWTN 389
Query: 187 LPDGVFAELFRLRTLRISENSFICDCHLS 215
P A + T++ + I +S
Sbjct: 390 APVNYKANVSIPNTVKNVTGALIAPATIS 418
Score = 61.5 bits (150), Expect = 2e-10
Identities = 30/80 (37%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
T L L N IT++ P N L R++LS N IS + A GL SL L+ N
Sbjct: 115 TGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFGNQVTDL 170
Query: 187 LPDGVFAELFRLRTLRISEN 206
P A L L L IS N
Sbjct: 171 KP---LANLTTLERLDISSN 187
Score = 61.1 bits (149), Expect = 2e-10
Identities = 14/80 (17%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
+ L + ++T+ + ++ + + I + D + L +LT + +NN LT
Sbjct: 27 MKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTD 82
Query: 187 LPDGVFAELFRLRTLRISEN 206
+ L +L + ++ N
Sbjct: 83 ITP--LKNLTKLVDILMNNN 100
Score = 61.1 bits (149), Expect = 2e-10
Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 6/80 (7%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
T L+ ++ I + L +I+ S NQ++ + + L L + +NNN +
Sbjct: 49 TTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDI--TPLKNLTKLVDILMNNNQIAD 104
Query: 187 LPDGVFAELFRLRTLRISEN 206
+ A L L L + N
Sbjct: 105 ITP--LANLTNLTGLTLFNN 122
Score = 58.4 bits (142), Expect = 1e-09
Identities = 23/100 (23%), Positives = 37/100 (37%), Gaps = 23/100 (23%)
Query: 127 TELRLEQNDITELPP-------------------KAFANYKRLRRIDLSKNQISKVAVDA 167
L L N I+++ K AN L R+D+S N++S +
Sbjct: 137 NRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SV 194
Query: 168 FQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENS 207
L +L SL NN ++ + L L L ++ N
Sbjct: 195 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQ 232
Score = 50.0 bits (120), Expect = 7e-07
Identities = 14/81 (17%), Positives = 28/81 (34%), Gaps = 4/81 (4%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
L N I++L P AN R+ ++ L+ + V+ + T+ N
Sbjct: 356 NWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPN--TVKNVTGAL 411
Query: 187 LPDGVFAELFRLRTLRISENS 207
+ ++ I+ N
Sbjct: 412 IAPATISDGGSYTEPDITWNL 432
Score = 49.6 bits (119), Expect = 1e-06
Identities = 10/81 (12%), Positives = 24/81 (29%), Gaps = 6/81 (7%)
Query: 126 TTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLT 185
+ + I ++ + L K ++ + L +T+L + +
Sbjct: 4 GSATITQDTPINQIFT--DTALAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGIK 59
Query: 186 YLPDGVFAELFRLRTLRISEN 206
+ L L + S N
Sbjct: 60 SIDG--VEYLNNLTQINFSNN 78
Score = 36.9 bits (86), Expect = 0.010
Identities = 8/53 (15%), Positives = 16/53 (30%), Gaps = 4/53 (7%)
Query: 155 LSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENS 207
I+++ L L N+T +L ++ TL+
Sbjct: 9 TQDTPINQI--FTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLG 57
Score = 33.0 bits (76), Expect = 0.17
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRL 402
N I++L P AN R+ ++ L T P AN
Sbjct: 360 AGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIP 401
Score = 33.0 bits (76), Expect = 0.18
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLR 403
N +T++ P N +L I + N I ++ P AN L
Sbjct: 75 FSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLT 115
Score = 31.5 bits (72), Expect = 0.57
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLR 403
L N I+ L P + +L ++L N I+ + P A L
Sbjct: 250 LANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALT 290
Score = 31.5 bits (72), Expect = 0.59
Identities = 6/35 (17%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPP 393
+ N ++++ A L + N I+++ P
Sbjct: 184 ISSNKVSDISV--LAKLTNLESLIATNNQISDITP 216
Score = 31.1 bits (71), Expect = 0.61
Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 4/45 (8%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLR 403
++ I + L +I N +T++ P N +L
Sbjct: 53 ADRLGIKSIDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLV 93
Score = 31.1 bits (71), Expect = 0.73
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
L N IT++ P N L R+ L N I+++ + L++
Sbjct: 119 LFNNQITDIDP--LKNLTNLNRLELSSNTISDISA--LSGLTSLQQ 160
Score = 30.7 bits (70), Expect = 0.88
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 4/45 (8%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLR 403
L N + ++ A+ L + L N I+ L P + +L
Sbjct: 228 LNGNQLKDIGT--LASLTNLTDLDLANNQISNLAP--LSGLTKLT 268
Score = 30.7 bits (70), Expect = 0.91
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLR 403
+ N I ++ P AN L + L N IT++ P N L
Sbjct: 97 MNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLN 137
Score = 30.3 bits (69), Expect = 1.1
Identities = 11/45 (24%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLR 403
L +N + ++ P +N K L + L N+I+++ P ++ +L+
Sbjct: 294 LNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQ 334
Score = 29.5 bits (67), Expect = 2.2
Identities = 9/45 (20%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLR 403
L N+I+++ P ++ +L+R+ N ++++ AN +
Sbjct: 316 LYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSS--LANLTNIN 356
Score = 28.4 bits (64), Expect = 5.5
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 361 QNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
N +T+L P AN L R+ + N ++++ A L
Sbjct: 164 GNQVTDLKP--LANLTTLERLDISSNKVSDISV--LAKLTNLES 203
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 64.7 bits (158), Expect = 8e-12
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
L LE N I+++ + +L + L N+I+ + L L +L+L +N ++
Sbjct: 115 KSLSLEHNGISDING--LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD 170
Query: 187 LPDGVFAELFRLRTLRISEN 206
+ A L +L+ L +S+N
Sbjct: 171 IVP--LAGLTKLQNLYLSKN 188
Score = 63.1 bits (154), Expect = 2e-11
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
L LE N I+++ P A +L+ + LSKN IS + A GLK+L L L +
Sbjct: 159 DTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 214
Query: 187 LPDGVFAELFRLRTLRISENSFICDCHLS 215
P + L T++ ++ S + +S
Sbjct: 215 KPINHQSNLVVPNTVKNTDGSLVTPEIIS 243
Score = 58.9 bits (143), Expect = 5e-10
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
T+L L N +T++ P AN K L + L +N++ + + + LK L SL+L +N ++
Sbjct: 71 TKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGISD 126
Query: 187 LPDGVFAELFRLRTLRISEN 206
+ L +L +L + N
Sbjct: 127 ING--LVHLPQLESLYLGNN 144
Score = 57.0 bits (138), Expect = 3e-09
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 6/80 (7%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
+ L++ +T+ + +I + + I V Q L ++T L LN N LT
Sbjct: 27 IKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTD 82
Query: 187 LPDGVFAELFRLRTLRISEN 206
+ A L L L + EN
Sbjct: 83 IKP--LANLKNLGWLFLDEN 100
Score = 53.9 bits (130), Expect = 3e-08
Identities = 11/80 (13%), Positives = 28/80 (35%), Gaps = 6/80 (7%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
+E I ++ + + +L K ++ L S+ + NN+++
Sbjct: 5 SETITVPTPIKQIFS--DDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIKS 60
Query: 187 LPDGVFAELFRLRTLRISEN 206
+ L + L ++ N
Sbjct: 61 VQG--IQYLPNVTKLFLNGN 78
Score = 32.3 bits (74), Expect = 0.24
Identities = 5/62 (8%), Positives = 14/62 (22%), Gaps = 2/62 (3%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
L L + P +N + + + V + + + +
Sbjct: 203 DVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL--VTPEIISDDGDYEKPNVKWHLPEF 260
Query: 187 LP 188
Sbjct: 261 TN 262
>3jqh_A C-type lectin domain family 4 member M; DC-signr, four-helix
bundle, oligomerization domain, alternative splicing,
calcium, cell membrane; 2.20A {Homo sapiens}
Length = 167
Score = 62.1 bits (152), Expect = 9e-12
Identities = 15/99 (15%), Positives = 31/99 (31%), Gaps = 10/99 (10%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
++L+ ++T L A ++ +++++ A L + L LT
Sbjct: 7 SKLQEIYQELTRLKA-AVGELPEKSKLQEIYQELTRLK-AAVGELPEKSKLQEIYQELTR 64
Query: 187 LPDGVFAELFRLRTLRISENSF------ICDC-HLSWLH 218
L EL L+ + + S L
Sbjct: 65 LKAA-VGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQ 102
Score = 60.9 bits (149), Expect = 2e-11
Identities = 14/80 (17%), Positives = 28/80 (35%), Gaps = 3/80 (3%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
++L+ ++T L A ++ +++++ A L + L LT
Sbjct: 30 SKLQEIYQELTRLKA-AVGELPEKSKLQEIYQELTRLK-AAVGELPEKSKLQEIYQELTR 87
Query: 187 LPDGVFAELFRLRTLRISEN 206
L V EL L+
Sbjct: 88 LKAAVG-ELPEKSKLQEIYQ 106
Score = 59.4 bits (145), Expect = 7e-11
Identities = 13/80 (16%), Positives = 27/80 (33%), Gaps = 3/80 (3%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
++L+ ++T L A ++ +++++ A L + L LT
Sbjct: 76 SKLQEIYQELTRLKA-AVGELPEKSKLQEIYQELTELK-AAVGELPEKSKLQEIYQELTQ 133
Query: 187 LPDGVFAELFRLRTLRISEN 206
L V EL +
Sbjct: 134 LKAAV-GELPDQSKQQQIYQ 152
Score = 52.5 bits (127), Expect = 2e-08
Identities = 10/65 (15%), Positives = 23/65 (35%), Gaps = 2/65 (3%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
++L+ ++TEL A ++ +++++ A L + LT
Sbjct: 99 SKLQEIYQELTELKA-AVGELPEKSKLQEIYQELTQLK-AAVGELPDQSKQQQIYQELTD 156
Query: 187 LPDGV 191
L
Sbjct: 157 LKTAF 161
Score = 47.1 bits (113), Expect = 1e-06
Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 2/59 (3%)
Query: 148 KRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISEN 206
++ +++++ A L + L LT L V EL L+
Sbjct: 4 PEKSKLQEIYQELTRLK-AAVGELPEKSKLQEIYQELTRLKAAV-GELPEKSKLQEIYQ 60
Score = 38.2 bits (90), Expect = 0.001
Identities = 9/38 (23%), Positives = 11/38 (28%), Gaps = 1/38 (2%)
Query: 171 LKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSF 208
L + L LT L V EL L+
Sbjct: 3 LPEKSKLQEIYQELTRLKAAV-GELPEKSKLQEIYQEL 39
Score = 32.8 bits (76), Expect = 0.095
Identities = 6/35 (17%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPP 393
++TEL A +++ ++T+L
Sbjct: 103 EIYQELTELKA-AVGELPEKSKLQEIYQELTQLKA 136
Score = 32.0 bits (74), Expect = 0.17
Identities = 5/35 (14%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPP 393
++T+L A + + ++T+L
Sbjct: 126 EIYQELTQLKA-AVGELPDQSKQQQIYQELTDLKT 159
Score = 30.9 bits (71), Expect = 0.38
Identities = 6/35 (17%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPP 393
++T L A +++ ++TEL
Sbjct: 80 EIYQELTRLKA-AVGELPEKSKLQEIYQELTELKA 113
Score = 30.9 bits (71), Expect = 0.46
Identities = 8/47 (17%), Positives = 11/47 (23%), Gaps = 8/47 (17%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSF------ICDC-HLSWLH 44
LT L EL L+ + + S L
Sbjct: 57 EIYQELTRLKAA-VGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQ 102
Score = 30.1 bits (69), Expect = 0.73
Identities = 5/35 (14%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPP 393
++T L A +++ ++T L
Sbjct: 11 EIYQELTRLKA-AVGELPEKSKLQEIYQELTRLKA 44
Score = 29.4 bits (67), Expect = 1.2
Identities = 6/28 (21%), Positives = 7/28 (25%), Gaps = 1/28 (3%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
LT L V EL +
Sbjct: 126 EIYQELTQLKAAV-GELPDQSKQQQIYQ 152
Score = 29.0 bits (66), Expect = 1.7
Identities = 7/28 (25%), Positives = 8/28 (28%), Gaps = 1/28 (3%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
LT L V EL L+
Sbjct: 80 EIYQELTRLKAAVG-ELPEKSKLQEIYQ 106
Score = 28.2 bits (64), Expect = 3.4
Identities = 7/28 (25%), Positives = 8/28 (28%), Gaps = 1/28 (3%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
LT L V EL L+
Sbjct: 34 EIYQELTRLKAAV-GELPEKSKLQEIYQ 60
Score = 27.8 bits (63), Expect = 4.4
Identities = 7/30 (23%), Positives = 8/30 (26%), Gaps = 1/30 (3%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSF 34
LT L V EL L+
Sbjct: 11 EIYQELTRLKAAV-GELPEKSKLQEIYQEL 39
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.8A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1
Length = 308
Score = 64.3 bits (157), Expect = 9e-12
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
TEL L N + + A + ++ +DL+ QI+ V GL +L L L+ N +T
Sbjct: 88 TELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITN 143
Query: 187 LPDGVFAELFRLRTLRISEN 206
+ A L L+ L I
Sbjct: 144 ISP--LAGLTNLQYLSIGNA 161
Score = 64.3 bits (157), Expect = 1e-11
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
L L+ N IT + P A L+ + + Q+S + L LT+L ++N ++
Sbjct: 132 QVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISD 187
Query: 187 LPDGVFAELFRLRTLRISEN 206
+ A L L + + N
Sbjct: 188 ISP--LASLPNLIEVHLKNN 205
Score = 60.9 bits (148), Expect = 2e-10
Identities = 14/80 (17%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
++ ++++T+ A+ + + ++ + + Q L +L L L +N +T
Sbjct: 22 IKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITD 77
Query: 187 LPDGVFAELFRLRTLRISEN 206
L L ++ L +S N
Sbjct: 78 LAP--LKNLTKITELELSGN 95
Score = 60.1 bits (146), Expect = 3e-10
Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 6/91 (6%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
T L +T + L ++L NQI+ + + L +T L L+ N L
Sbjct: 44 TTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQITDL--APLKNLTKITELELSGNPLKN 99
Query: 187 LPDGVFAELFRLRTLRISENSFICDCHLSWL 217
+ A L ++TL ++ L+ L
Sbjct: 100 VSA--IAGLQSIKTLDLTSTQITDVTPLAGL 128
Score = 58.9 bits (143), Expect = 6e-10
Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
T L+ + N I+++ P A+ L + L NQIS V +L +TL N +T
Sbjct: 176 TTLKADDNKISDISP--LASLPNLIEVHLKNNQISDV--SPLANTSNLFIVTLTNQTITN 231
Query: 187 LPDGVFAELFRLRTLRISENSFI 209
P L ++ + I
Sbjct: 232 QPVFYNNNLVVPNVVKGPSGAPI 254
Score = 47.0 bits (112), Expect = 4e-06
Identities = 12/76 (15%), Positives = 25/76 (32%), Gaps = 6/76 (7%)
Query: 131 LEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDG 190
+ I + P +I K+ ++ L +T+L+ +T +
Sbjct: 4 TQPTAINVIFP--DPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTTIEG- 58
Query: 191 VFAELFRLRTLRISEN 206
L L L + +N
Sbjct: 59 -VQYLNNLIGLELKDN 73
Score = 43.5 bits (103), Expect = 6e-05
Identities = 13/81 (16%), Positives = 29/81 (35%), Gaps = 4/81 (4%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
E+ L+ N I+++ P AN L + L+ I+ V L + +
Sbjct: 198 IEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVP--NVVKGPSGAP 253
Query: 187 LPDGVFAELFRLRTLRISENS 207
+ ++ + ++ N
Sbjct: 254 IAPATISDNGTYASPNLTWNL 274
Score = 31.2 bits (71), Expect = 0.53
Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 4/45 (8%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLR 403
+T + L + L+ N IT+L P N ++
Sbjct: 48 AFGTGVTTIEG--VQYLNNLIGLELKDNQITDLAP--LKNLTKIT 88
Score = 31.2 bits (71), Expect = 0.57
Identities = 10/45 (22%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLR 403
+ +++L P AN +L ++ + N I+++ P A+ L
Sbjct: 158 IGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLI 198
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine
rich repeat domain, type three effector, salmonella
virulence factor; 1.90A {Salmonella typhimurium}
Length = 622
Score = 62.2 bits (151), Expect = 1e-10
Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 12/102 (11%)
Query: 107 IVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVD 166
+++ E GL +P LP T L + N++T LP LR +++S NQ++ +
Sbjct: 44 VLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLP-V 98
Query: 167 AFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSF 208
GL L+ + +L LP G L L I N
Sbjct: 99 LPPGLLELSIFSNPLTHLPALPSG-------LCKLWIFGNQL 133
Score = 59.9 bits (145), Expect = 7e-10
Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 11/98 (11%)
Query: 111 REKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQG 170
R + K+ L L + ++ +T LP A+ + + + N ++ +
Sbjct: 27 RAAVVQKMRACLNNGNAVLNVGESGLTTLPDCLPAH---ITTLVIPDNNLTSLP----AL 79
Query: 171 LKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSF 208
L +L ++ N LT LP L L I N
Sbjct: 80 PPELRTLEVSGNQLTSLPV----LPPGLLELSIFSNPL 113
Score = 53.7 bits (129), Expect = 5e-08
Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 13/94 (13%)
Query: 115 LNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSL 174
L +P+L P EL + N + LP + L ++ NQ++ + + L
Sbjct: 133 LTSLPVLPP-GLQELSVSDNQLASLPA-LPSE---LCKLWAYNNQLTSLPML----PSGL 183
Query: 175 TSLTLNNNNLTYLPDGVFAELFRLRTLRISENSF 208
L++++N L LP L L N
Sbjct: 184 QELSVSDNQLASLPT----LPSELYKLWAYNNRL 213
Score = 51.8 bits (124), Expect = 2e-07
Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 13/92 (14%)
Query: 115 LNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSL 174
L +P+L EL + N + LP L ++ N+++ + L
Sbjct: 173 LTSLPMLPS-GLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSLP----ALPSGL 223
Query: 175 TSLTLNNNNLTYLPDGVFAELFRLRTLRISEN 206
L ++ N LT LP L+ L +S N
Sbjct: 224 KELIVSGNRLTSLP----VLPSELKELMVSGN 251
Score = 51.8 bits (124), Expect = 3e-07
Identities = 48/209 (22%), Positives = 66/209 (31%), Gaps = 52/209 (24%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSF------ICDC-HLSWLHRWLKRYPRLGLYT 57
+ +NNLT LP LRTL +S N LS L P L
Sbjct: 68 IPDNNLTSLPA----LPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPAL---- 119
Query: 58 KCFAPSHIKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNK 117
PS + I P P + + + L
Sbjct: 120 ----PSGLCKLWIFGNQLTSL----------------PVLPPGLQE----LSVSDNQLAS 155
Query: 118 VPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSL 177
+P L E +L N +T LP L+ + +S NQ++ + L L
Sbjct: 156 LPALPSELC-KLWAYNNQLTSLPM----LPSGLQELSVSDNQLASLPTL----PSELYKL 206
Query: 178 TLNNNNLTYLPDGVFAELFRLRTLRISEN 206
NN LT LP A L+ L +S N
Sbjct: 207 WAYNNRLTSLP----ALPSGLKELIVSGN 231
Score = 49.9 bits (119), Expect = 1e-06
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 12/80 (15%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
+L N +T LP A L+ + +S N+++ + V L L ++ N LT
Sbjct: 204 YKLWAYNNRLTSLP----ALPSGLKELIVSGNRLTSLPVL----PSELKELMVSGNRLTS 255
Query: 187 LPDGVFAELFRLRTLRISEN 206
LP L +L + N
Sbjct: 256 LPM----LPSGLLSLSVYRN 271
Score = 43.7 bits (103), Expect = 9e-05
Identities = 17/99 (17%), Positives = 34/99 (34%), Gaps = 6/99 (6%)
Query: 109 DCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAF 168
L +P+L L + +N +T LP + + ++L N +S+ + A
Sbjct: 247 MVSGNRLTSLPMLPS-GLLSLSVYRNQLTRLPE-SLIHLSSETTVNLEGNPLSERTLQAL 304
Query: 169 QGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENS 207
+ +TS + + D A R +
Sbjct: 305 R---EITSAPGYSGPIIR-FDMAGASAPRETRALHLAAA 339
Score = 33.3 bits (76), Expect = 0.16
Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRL 402
+ +N +T LP + + + LE N ++E +A
Sbjct: 268 VYRNQLTRLPE-SLIHLSSETTVNLEGNPLSERTLQALREITSA 310
Score = 31.8 bits (72), Expect = 0.41
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSF 34
+ N LT LP+ L T+ + N
Sbjct: 268 VYRNQLTRLPES-LIHLSSETTVNLEGNPL 296
Score = 30.6 bits (69), Expect = 1.1
Identities = 15/95 (15%), Positives = 28/95 (29%), Gaps = 4/95 (4%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTL-NNNNLT 185
T + LE N ++E + + I + + + +L L + L
Sbjct: 287 TTVNLEGNPLSERT---LQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLV 343
Query: 186 YLPDGVFAELFRLRTLRISENSFICDCHLSWLHRW 220
+G A R +N+ L L
Sbjct: 344 PAREGEPAPADRWHMFGQEDNADAFSLFLDRLSET 378
Score = 29.5 bits (66), Expect = 2.3
Identities = 18/96 (18%), Positives = 27/96 (28%), Gaps = 23/96 (23%)
Query: 305 IVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNF-----KRWTN-RSRR 358
+++ E GL +P LP T L I +N R+
Sbjct: 44 VLNVGESGLTTLPDCLPAHITTL----------------VIPDNNLTSLPALPPELRTLE 87
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPK 394
+ N +T LP L + LP
Sbjct: 88 VSGNQLTSLPV-LPPGLLELSIFSNPLTHLPALPSG 122
Score = 28.7 bits (64), Expect = 4.5
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 4/31 (12%)
Query: 4 TLNNNNLTYLPDGVFAELFRLRTLRISENSF 34
NN LT LP L+ L +S+N
Sbjct: 167 WAYNNQLTSLPM----LPSGLQELSVSDNQL 193
Score = 28.3 bits (63), Expect = 5.3
Identities = 7/31 (22%), Positives = 11/31 (35%), Gaps = 4/31 (12%)
Query: 4 TLNNNNLTYLPDGVFAELFRLRTLRISENSF 34
++++N L LP L L N
Sbjct: 187 SVSDNQLASLPT----LPSELYKLWAYNNRL 213
Score = 27.6 bits (61), Expect = 8.3
Identities = 9/46 (19%), Positives = 17/46 (36%), Gaps = 5/46 (10%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
+ N +T LP L + + +N +T LP + +
Sbjct: 248 VSGNRLTSLPM----LPSGLLSLSVYRNQLTRLPE-SLIHLSSETT 288
Score = 27.6 bits (61), Expect = 9.7
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENS 33
+ + LT LPD + A + TL I +N+
Sbjct: 47 VGESGLTTLPDCLPA---HITTLVIPDNN 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET:
NAG; 2.50A {Mus musculus}
Length = 312
Score = 60.7 bits (147), Expect = 2e-10
Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 7/101 (6%)
Query: 115 LNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISK----VAVDAFQG 170
L ++ L L + Q + + L +DLS N ++
Sbjct: 140 LAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK 199
Query: 171 LKSLTSLTLNNNNLTYLPD---GVFAELFRLRTLRISENSF 208
+L L L N + + A +L+ L +S NS
Sbjct: 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSL 240
Score = 57.2 bits (138), Expect = 3e-09
Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 6/84 (7%)
Query: 127 TELRLEQNDITELPPK-AFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLT 185
L L N + + + +L ++LS + +V L+ L L+ N L
Sbjct: 231 QGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPA---KLSVLDLSYNRLD 287
Query: 186 YLPDGVFAELFRLRTLRISENSFI 209
P EL ++ L + N F+
Sbjct: 288 RNPS--PDELPQVGNLSLKGNPFL 309
Score = 47.6 bits (113), Expect = 3e-06
Identities = 18/96 (18%), Positives = 30/96 (31%), Gaps = 6/96 (6%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQG------LKSLTSLTLN 180
EL LE ++T P L+ +S DA+ L L++
Sbjct: 98 QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIA 157
Query: 181 NNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSW 216
+ L TL +S+N + + L
Sbjct: 158 QAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193
Score = 32.2 bits (73), Expect = 0.31
Identities = 13/86 (15%), Positives = 22/86 (25%), Gaps = 8/86 (9%)
Query: 130 RLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAV--DAFQGLKSLTSLTLNNNNLTYL 187
L+ + L +++ A L L L N +
Sbjct: 77 AARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR 136
Query: 188 PDGVFAELF-----RLRTLRISENSF 208
AEL L+ L I++
Sbjct: 137 DAW-LAELQQWLKPGLKVLSIAQAHS 161
Score = 31.8 bits (72), Expect = 0.38
Identities = 6/39 (15%), Positives = 13/39 (33%)
Query: 4 TLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSW 42
++ + L TL +S+N + + L
Sbjct: 155 SIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193
Score = 31.0 bits (70), Expect = 0.65
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFI 35
L+ N L P EL ++ L + N F+
Sbjct: 281 LSYNRLDRNPS--PDELPQVGNLSLKGNPFL 309
Score = 31.0 bits (70), Expect = 0.68
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Query: 114 GLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQI 160
GL +VP LP + L L N + P ++ + L N
Sbjct: 264 GLKQVPKGLPAKLSVLDLSYNRLDRNPS--PDELPQVGNLSLKGNPF 308
Score = 27.9 bits (62), Expect = 6.5
Identities = 7/60 (11%), Positives = 17/60 (28%), Gaps = 6/60 (10%)
Query: 345 ISNNFKRWTNRSRRLE-----QNDITELPPK-AFANYKRLRRIRLEQNDITELPPKAFAN 398
S +L+ N + + + +L + L + ++P A
Sbjct: 216 PSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAK 275
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder,
asparagine ladder, virulence factor, solenoid, cell
WALL; 2.70A {Listeria monocytogenes}
Length = 457
Score = 60.5 bits (147), Expect = 3e-10
Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 9/98 (9%)
Query: 109 DCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAF 168
DC + ++ + + L + N+IT+L +L +D S N+++++
Sbjct: 176 DCSFNKITELDVSQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLTEID---V 229
Query: 169 QGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISEN 206
L LT + N LT L ++ L TL +
Sbjct: 230 TPLTQLTYFDCSVNPLTELDVSTLSK---LTTLHCIQT 264
Score = 57.4 bits (139), Expect = 3e-09
Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 9/81 (11%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
T+L N+IT L + L + N+++ + L LT L + N LT
Sbjct: 67 TKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTK 120
Query: 187 LPDGVFAELFRLRTLRISENS 207
L ++ L L + N+
Sbjct: 121 LD---VSQNPLLTYLNCARNT 138
Score = 57.0 bits (138), Expect = 5e-09
Identities = 18/99 (18%), Positives = 33/99 (33%), Gaps = 8/99 (8%)
Query: 109 DCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAF 168
+ + + T L + IT++ L ++ + N I+ +
Sbjct: 27 AFEMQATDTISEEQLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTSNNITTL---DL 81
Query: 169 QGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENS 207
+LT L ++N LT L L +L L N
Sbjct: 82 SQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNK 117
Score = 55.8 bits (135), Expect = 9e-09
Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 8/98 (8%)
Query: 109 DCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAF 168
+C L K+ + T L +N +TE+ ++ +L +D N+
Sbjct: 112 NCDTNKLTKLDVSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITK--LDV 166
Query: 169 QGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISEN 206
LT+L + N +T L ++ L L N
Sbjct: 167 TPQTQLTTLDCSFNKITELD---VSQNKLLNRLNCDTN 201
Score = 55.5 bits (134), Expect = 1e-08
Identities = 19/109 (17%), Positives = 36/109 (33%), Gaps = 9/109 (8%)
Query: 109 DCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAF 168
C + + + T L + N +T L +L ++ N+++K+
Sbjct: 70 ICTSNNITTLDLSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKLD---V 123
Query: 169 QGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWL 217
LT L N LT + + +L L N I ++
Sbjct: 124 SQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITKLDVTPQ 169
Score = 55.5 bits (134), Expect = 1e-08
Identities = 15/83 (18%), Positives = 31/83 (37%), Gaps = 8/83 (9%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
L + ITEL + +L + L+ +++++ V L SL+ N ++
Sbjct: 300 YLLDCQAAGITELD---LSQNPKLVYLYLNNTELTELDVS---HNTKLKSLSCVNAHIQD 353
Query: 187 LPDGVFAELFRLRTLRISENSFI 209
++ L +E I
Sbjct: 354 FSS--VGKIPALNNNFEAEGQTI 374
Score = 55.5 bits (134), Expect = 1e-08
Identities = 14/81 (17%), Positives = 26/81 (32%), Gaps = 5/81 (6%)
Query: 128 ELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYL 187
++ + L +D + I+ + + L LT L +NN+T L
Sbjct: 22 SEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSNNITTL 79
Query: 188 PDGVFAELFRLRTLRISENSF 208
++ L L N
Sbjct: 80 D---LSQNTNLTYLACDSNKL 97
Score = 54.3 bits (131), Expect = 3e-08
Identities = 15/100 (15%), Positives = 33/100 (33%), Gaps = 8/100 (8%)
Query: 107 IVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVD 166
+ C + L ++ + + ++ + +L +D I+++
Sbjct: 258 TLHCIQTDLLEIDLTHNTQLIYFQA--EGCRKIKELDVTHNTQLYLLDCQAAGITEL--- 312
Query: 167 AFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISEN 206
L L LNN LT L + +L++L
Sbjct: 313 DLSQNPKLVYLYLNNTELTELD---VSHNTKLKSLSCVNA 349
Score = 52.0 bits (125), Expect = 2e-07
Identities = 18/107 (16%), Positives = 37/107 (34%), Gaps = 9/107 (8%)
Query: 109 DCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAF 168
+C + K+ + T L N +TE+ +L D S N ++++
Sbjct: 197 NCDTNNITKLDLNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELD---V 250
Query: 169 QGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLS 215
L LT+L +L + +L + I + ++
Sbjct: 251 STLSKLTTLHCIQTDLLEID---LTHNTQLIYFQAEGCRKIKELDVT 294
Score = 51.6 bits (124), Expect = 2e-07
Identities = 15/109 (13%), Positives = 34/109 (31%), Gaps = 16/109 (14%)
Query: 109 DCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAF 168
DC+ G+ ++ + L L ++TEL ++ +L+ + I +
Sbjct: 303 DCQAAGITELDLSQNPKLVYLYLNNTELTELD---VSHNTKLKSLSCVNAHIQDF--SSV 357
Query: 169 QGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWL 217
+ +L + +P ++ NS L
Sbjct: 358 GKIPALNNNFEAEGQTITMP-----------KETLTNNSLTIAVSPDLL 395
Score = 50.5 bits (121), Expect = 5e-07
Identities = 20/116 (17%), Positives = 33/116 (28%), Gaps = 19/116 (16%)
Query: 109 DCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLR-------RIDLSKN--- 158
DC L ++ + T N +TEL + L IDL+ N
Sbjct: 218 DCSSNKLTEIDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQL 277
Query: 159 ------QISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSF 208
K+ L L +T L ++ +L L ++
Sbjct: 278 IYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELD---LSQNPKLVYLYLNNTEL 330
Score = 38.9 bits (91), Expect = 0.002
Identities = 11/58 (18%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 150 LRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENS 207
+ ++ + + L +LTSL +N+++T + +L L L + N+
Sbjct: 20 FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTSNN 75
Score = 31.6 bits (72), Expect = 0.44
Identities = 9/44 (20%), Positives = 14/44 (31%), Gaps = 3/44 (6%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRL 402
N +TE+ +L N +TEL + L
Sbjct: 219 CSSNKLTEID---VTPLTQLTYFDCSVNPLTELDVSTLSKLTTL 259
Score = 30.4 bits (69), Expect = 1.3
Identities = 8/44 (18%), Positives = 13/44 (29%), Gaps = 3/44 (6%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRL 402
N +TEL + L + Q D+ E+
Sbjct: 240 CSVNPLTELDVSTLSK---LTTLHCIQTDLLEIDLTHNTQLIYF 280
Score = 28.9 bits (65), Expect = 3.6
Identities = 9/44 (20%), Positives = 14/44 (31%), Gaps = 3/44 (6%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRL 402
N+IT L + L + + N +T L L
Sbjct: 71 CTSNNITTLD---LSQNTNLTYLACDSNKLTNLDVTPLTKLTYL 111
Score = 28.5 bits (64), Expect = 4.6
Identities = 8/44 (18%), Positives = 15/44 (34%), Gaps = 3/44 (6%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRL 402
+ N +T L +L + + N +T+L L
Sbjct: 92 CDSNKLTNLD---VTPLTKLTYLNCDTNKLTKLDVSQNPLLTYL 132
Score = 28.1 bits (63), Expect = 5.3
Identities = 6/35 (17%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPP 393
L ++TEL ++ +L+ + I +
Sbjct: 325 LNNTELTELD---VSHNTKLKSLSCVNAHIQDFSS 356
Score = 28.1 bits (63), Expect = 6.3
Identities = 9/44 (20%), Positives = 15/44 (34%), Gaps = 2/44 (4%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRL 402
+ IT++ L ++ N+IT L N L
Sbjct: 49 CHNSSITDMTG--IEKLTGLTKLICTSNNITTLDLSQNTNLTYL 90
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell
invasion; 2.05A {Listeria monocytogenes}
Length = 263
Score = 58.5 bits (142), Expect = 5e-10
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 8/85 (9%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
EL + +N + L A L R+ L N++ D+ LK+L L++ NN L
Sbjct: 88 EELSVNRNRLKNLNGIPSAC---LSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKS 142
Query: 187 LPDGVFAELFRLRTLRISENSFICD 211
+ L +L L + N I +
Sbjct: 143 IVM--LGFLSKLEVLDLHGNE-ITN 164
Score = 58.5 bits (142), Expect = 7e-10
Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 4/89 (4%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
L + N + + +L +DL N+I+ LK + + L
Sbjct: 131 EILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN 186
Query: 187 LPDGVFAELFRLRTLRISENSFICDCHLS 215
P EL+ T++ + +I ++S
Sbjct: 187 EPVKYQPELYITNTVKDPDGRWISPYYIS 215
Score = 54.3 bits (131), Expect = 2e-08
Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 7/81 (8%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
+ ++I L + L+ + LS NQIS + + L L L++N N L
Sbjct: 44 QNFNGDNSNIQSLAG--MQFFTNLKELHLSHNQISD--LSPLKDLTKLEELSVNRNRLKN 99
Query: 187 LPDGVFAELFRLRTLRISENS 207
L L L + N
Sbjct: 100 LNGI---PSACLSRLFLDNNE 117
Score = 53.1 bits (128), Expect = 4e-08
Identities = 13/79 (16%), Positives = 29/79 (36%), Gaps = 6/79 (7%)
Query: 128 ELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYL 187
E I ++ P + +L K ++ + + + L + + +N+N+ L
Sbjct: 1 ESIQRPTPINQVFP--DPGLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQSL 56
Query: 188 PDGVFAELFRLRTLRISEN 206
L+ L +S N
Sbjct: 57 AG--MQFFTNLKELHLSHN 73
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold,
ligase; 2.80A {Shigella flexneri 2A}
Length = 571
Score = 59.6 bits (144), Expect = 8e-10
Identities = 20/98 (20%), Positives = 41/98 (41%), Gaps = 15/98 (15%)
Query: 115 LNKVPILLPEAT----TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQG 170
N+ LL E +EL+L + +++ LP + +++++N + + +
Sbjct: 46 RNEAVSLLKECLINQFSELQLNRLNLSSLPDNLPPQ---ITVLEITQNALISLP----EL 98
Query: 171 LKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSF 208
SL L +N L+ LP+ L+ L + N
Sbjct: 99 PASLEYLDACDNRLSTLPE----LPASLKHLDVDNNQL 132
Score = 56.5 bits (136), Expect = 7e-09
Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 12/98 (12%)
Query: 109 DCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAF 168
L+ +P LP T L + QN + LP A+ L +D N++S +
Sbjct: 65 QLNRLNLSSLPDNLPPQITVLEITQNALISLPE-LPAS---LEYLDACDNRLSTLP---- 116
Query: 169 QGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISEN 206
+ SL L ++NN LT LP+ L + N
Sbjct: 117 ELPASLKHLDVDNNQLTMLPE----LPALLEYINADNN 150
Score = 55.7 bits (134), Expect = 1e-08
Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 13/98 (13%)
Query: 109 DCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAF 168
D + L+ +P L L ++ N +T LP A L I+ NQ++ +
Sbjct: 106 DACDNRLSTLPELPASLK-HLDVDNNQLTMLPE-LPAL---LEYINADNNQLTMLP---- 156
Query: 169 QGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISEN 206
+ SL L++ NN LT+LP+ L L +S N
Sbjct: 157 ELPTSLEVLSVRNNQLTFLPE----LPESLEALDVSTN 190
Score = 51.1 bits (122), Expect = 4e-07
Identities = 17/110 (15%), Positives = 34/110 (30%), Gaps = 5/110 (4%)
Query: 115 LNKVPILLPEATTELRLEQNDITELPPKAFANY---KRLRRIDLSKNQISKVAVDAFQGL 171
L +P LPE+ L + N + LP N+ + +N+I+ + + L
Sbjct: 172 LTFLP-ELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIP-ENILSL 229
Query: 172 KSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWL 221
++ L +N L+ ++ F
Sbjct: 230 DPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRP 279
Score = 48.4 bits (115), Expect = 3e-06
Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 7/95 (7%)
Query: 118 VPILLP---EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQI-SKVAVDAFQGLKS 173
+ I+LP + N I+ F+ + + + L V++ +
Sbjct: 1 MSIMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQ 60
Query: 174 LTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSF 208
+ L LN NL+ LPD + ++ L I++N+
Sbjct: 61 FSELQLNRLNLSSLPDNLPP---QITVLEITQNAL 92
Score = 32.6 bits (74), Expect = 0.23
Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFAN 398
+N IT +P + I LE N ++ ++ +
Sbjct: 214 CRENRITHIPE-NILSLDPTCTIILEDNPLSSRIRESLSQ 252
Score = 30.7 bits (69), Expect = 0.97
Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPP 393
L + +++ LP + + + QN + LP
Sbjct: 66 LNRLNLSSLPDNLPPQ---ITVLEITQNALISLPE 97
Score = 30.3 bits (68), Expect = 1.2
Identities = 6/28 (21%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
N +T++P+ + L T+ + +N
Sbjct: 214 CRENRITHIPENIL-SLDPTCTIILEDN 240
Score = 29.9 bits (67), Expect = 1.8
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSF 34
LN NL+ LPD + ++ L I++N+
Sbjct: 66 LNRLNLSSLPDNLPP---QITVLEITQNAL 92
Score = 29.2 bits (65), Expect = 2.6
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 4/36 (11%)
Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPP 393
+ N +T LP L + + N +T LP
Sbjct: 146 NADNNQLTMLPELP----TSLEVLSVRNNQLTFLPE 177
Score = 28.8 bits (64), Expect = 3.8
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 4/36 (11%)
Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPP 393
+ N +T LP + L + + N + LP
Sbjct: 166 SVRNNQLTFLPELP----ESLEALDVSTNLLESLPA 197
Score = 28.4 bits (63), Expect = 4.8
Identities = 9/28 (32%), Positives = 12/28 (42%), Gaps = 4/28 (14%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
+NN LT LP+ L L + N
Sbjct: 147 ADNNQLTMLPE----LPTSLEVLSVRNN 170
Score = 28.4 bits (63), Expect = 5.0
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 4/28 (14%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISEN 32
+ NN LT+LP+ L L +S N
Sbjct: 167 VRNNQLTFLPE----LPESLEALDVSTN 190
Score = 28.0 bits (62), Expect = 5.8
Identities = 7/30 (23%), Positives = 12/30 (40%), Gaps = 4/30 (13%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSF 34
+N L+ LP+ L+ L + N
Sbjct: 107 ACDNRLSTLPE----LPASLKHLDVDNNQL 132
Score = 28.0 bits (62), Expect = 6.4
Identities = 8/59 (13%), Positives = 22/59 (37%), Gaps = 3/59 (5%)
Query: 345 ISNNFKRWTNRSRRLEQ-NDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRL 402
+ + +W ++ E N+ L + + ++L + +++ LP L
Sbjct: 29 YFSAWDKWEKQALPGENRNEAVSLLKECL--INQFSELQLNRLNLSSLPDNLPPQITVL 85
Score = 27.6 bits (61), Expect = 7.7
Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 4/49 (8%)
Query: 359 LEQNDITELPPKAFANY---KRLRRIRLEQNDITELPPKAFANYKRLRR 404
+ N + LP N+ + R +N IT +P +
Sbjct: 187 VSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPE-NILSLDPTCT 234
Score = 27.6 bits (61), Expect = 9.9
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 4/37 (10%)
Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPK 394
++ N +T LP A L I + N +T LP
Sbjct: 126 DVDNNQLTMLPE-LPAL---LEYINADNNQLTMLPEL 158
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, LRR, N- and
C-terminal helices; 2.00A {Xanthomonas campestris PV}
Length = 328
Score = 57.6 bits (140), Expect = 2e-09
Identities = 26/103 (25%), Positives = 37/103 (35%), Gaps = 7/103 (6%)
Query: 109 DCREKGLNKVPILLPEAT----TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVA 164
+ L LL +AT L L + + P L+ + + + ++
Sbjct: 62 TRTGRALKATADLLEDATQPGRVALELRSVPLPQFPD-QAFRLSHLQHMTIDAAGLMELP 120
Query: 165 VDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENS 207
D Q L +LTL N L LP A L RLR L I
Sbjct: 121 -DTMQQFAGLETLTLARNPLRALPAS-IASLNRLRELSIRACP 161
Score = 54.6 bits (132), Expect = 2e-08
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 11/90 (12%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSK-NQISKV--------AVDAFQGLKSLTSL 177
L L +N + LP + A+ RLR + + +++++ A QGL +L SL
Sbjct: 130 ETLTLARNPLRALPA-SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSL 188
Query: 178 TLNNNNLTYLPDGVFAELFRLRTLRISENS 207
L + LP A L L++L+I +
Sbjct: 189 RLEWTGIRSLPAS-IANLQNLKSLKIRNSP 217
Score = 49.6 bits (119), Expect = 7e-07
Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 5/85 (5%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSK-NQISKVAVDAFQGLKSLTSLTL-NNNNL 184
L++ + ++ L P A + +L +DL + F G L L L + +NL
Sbjct: 209 KSLKIRNSPLSALGP-AIHHLPKLEELDLRGCTALRNYP-PIFGGRAPLKRLILKDCSNL 266
Query: 185 TYLPDGVFAELFRLRTLRISENSFI 209
LP L +L L + +
Sbjct: 267 LTLPLD-IHRLTQLEKLDLRGCVNL 290
Score = 41.1 bits (97), Expect = 4e-04
Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 6/83 (7%)
Query: 127 TELRL-EQNDITELPPKAFANYKRLRRIDLS-KNQISKVAVDAFQGLKSLTSLTL-NNNN 183
EL L + PP F L+R+ L + + + L L L L N
Sbjct: 232 EELDLRGCTALRNYPP-IFGGRAPLKRLILKDCSNLLTLP-LDIHRLTQLEKLDLRGCVN 289
Query: 184 LTYLPDGVFAELFRLRTLRISEN 206
L+ LP A+L + + +
Sbjct: 290 LSRLPSL-IAQLPANCIILVPPH 311
Score = 34.9 bits (81), Expect = 0.033
Identities = 9/64 (14%), Positives = 20/64 (31%), Gaps = 2/64 (3%)
Query: 127 TELRL-EQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLT 185
L L + +++ LP +L ++DL L + + + +
Sbjct: 256 KRLILKDCSNLLTLPL-DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314
Query: 186 YLPD 189
L
Sbjct: 315 QLDQ 318
Score = 31.5 bits (72), Expect = 0.49
Identities = 7/46 (15%), Positives = 15/46 (32%), Gaps = 2/46 (4%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
L + + P L+ + ++ + ELP + L
Sbjct: 88 LRSVPLPQFPD-QAFRLSHLQHMTIDAAGLMELPD-TMQQFAGLET 131
Score = 31.1 bits (71), Expect = 0.66
Identities = 8/84 (9%), Positives = 19/84 (22%), Gaps = 7/84 (8%)
Query: 127 TELRLE-QNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLT 185
L + + + ++R D ++ + + T L
Sbjct: 15 ENLYFQGSTALRPYH-DVLSQWQRHYNADRNRWHSAW----RQANSNNPQIETRTGRALK 69
Query: 186 YLPDGV-FAELFRLRTLRISENSF 208
D + A L +
Sbjct: 70 ATADLLEDATQPGRVALELRSVPL 93
Score = 30.3 bits (69), Expect = 1.1
Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPP 393
LE I LP + AN + L+ +++ + ++ L P
Sbjct: 190 LEWTGIRSLPA-SIANLQNLKSLKIRNSPLSALGP 223
Score = 30.3 bits (69), Expect = 1.2
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPP 393
++ + ELP + L + L +N + LP
Sbjct: 111 IDAAGLMELPD-TMQQFAGLETLTLARNPLRALPA 144
Score = 28.8 bits (65), Expect = 2.9
Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSF 34
L + L PD F L L+ + I
Sbjct: 88 LRSVPLPQFPDQAF-RLSHLQHMTIDAAGL 116
Score = 28.8 bits (65), Expect = 3.4
Identities = 7/30 (23%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 6 NNNNLTYLPDGVFAELFRLRTLRISENSFI 35
+ +NL LP L +L L + +
Sbjct: 262 DCSNLLTLPLD-IHRLTQLEKLDLRGCVNL 290
Score = 28.4 bits (64), Expect = 4.1
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENS 33
L + LP A L L++L+I +
Sbjct: 190 LEWTGIRSLPAS-IANLQNLKSLKIRNSP 217
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 56.7 bits (136), Expect = 6e-09
Identities = 25/81 (30%), Positives = 30/81 (37%), Gaps = 4/81 (4%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
T L L N + LPP A A + L + S N + V D L L L L NN L
Sbjct: 466 THLDLSHNRLRALPP-ALAALRCLEVLQASDNALENV--DGVANLPRLQELLLCNNRLQQ 522
Query: 187 LPD-GVFAELFRLRTLRISEN 206
RL L + N
Sbjct: 523 SAAIQPLVSCPRLVLLNLQGN 543
Score = 47.8 bits (113), Expect = 4e-06
Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKV-AVDAFQGLKSLTSLTLNNNNLT 185
L+ N + + AN RL+ + L N++ + A+ L L L N+L
Sbjct: 489 EVLQASDNALENVDG--VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546
Query: 186 YLPD 189
Sbjct: 547 QEEG 550
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP,
ribonucleoprotein, RNA binding protein/RNA complex;
2.38A {Homo sapiens} SCOP: c.10.2.4
Length = 176
Score = 52.7 bits (127), Expect = 2e-08
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
EL L I + A + ID S N+I K +D F L+ L +L +NNN +
Sbjct: 22 RELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRK--LDGFPLLRRLKTLLVNNNRICR 78
Query: 187 LPDGVFAELFRLRTLRISENSFICD 211
+ +G+ L L L ++ N + +
Sbjct: 79 IGEGLDQALPDLTELILTNN-SLVE 102
Score = 52.4 bits (126), Expect = 2e-08
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 128 ELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYL 187
+ N+I +L F +RL+ + ++ N+I ++ Q L LT L L NN+L L
Sbjct: 46 AIDFSDNEIRKLDG--FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVEL 103
Query: 188 PD-GVFAELFRLRTLRISEN 206
D A L L L I N
Sbjct: 104 GDLDPLASLKSLTYLCILRN 123
Score = 48.9 bits (117), Expect = 4e-07
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVA-VDAFQGLKSLTSLTLNNNNLT 185
L + N I + L + L+ N + ++ +D LKSLT L + N +T
Sbjct: 67 KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 126
Query: 186 YLPD 189
Sbjct: 127 NKKH 130
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote in
leucines, structural genomics; NMR {Homo sapiens} PDB:
2rr6_A 2jqd_A
Length = 168
Score = 52.1 bits (125), Expect = 3e-08
Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
L L + + +L++++LS+N+I + L +LT L L+ N L
Sbjct: 52 EFLSLINVGLISVSN--LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD 109
Query: 187 LPD-GVFAELFRLRTLRISEN 206
+ +L L++L +
Sbjct: 110 ISTLEPLKKLECLKSLDLFNC 130
Score = 51.3 bits (123), Expect = 5e-08
Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Query: 123 PEATTELRLE--QNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLN 180
P A EL L+ +++ ++ A + L + L + V+ L L L L+
Sbjct: 23 PAAVRELVLDNCKSNDGKIEGLT-AEFVNLEFLSLINVGLISVSN--LPKLPKLKKLELS 79
Query: 181 NNNLTYLPDGVFAELFRLRTLRISEN 206
N + D + +L L L +S N
Sbjct: 80 ENRIFGGLDMLAEKLPNLTHLNLSGN 105
Score = 48.2 bits (115), Expect = 5e-07
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVA-VDAFQGLKSLTSLTLNNNNLT 185
+L L +N I L ++LS N++ ++ ++ + L+ L SL L N +T
Sbjct: 74 KKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133
Query: 186 YLPD---GVFAELFRLRTL 201
L D VF L +L L
Sbjct: 134 NLNDYRESVFKLLPQLTYL 152
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich
RE receptor-like kinases, leucine-rich repeat; HET: NAG
BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A*
3rj0_A*
Length = 768
Score = 54.5 bits (132), Expect = 3e-08
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Query: 127 TELRLEQNDIT-ELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLT 185
L L +N T E+P L +DLS N F L SL L++NN +
Sbjct: 272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 331
Query: 186 -YLPDGVFAELFRLRTLRISENSF 208
LP ++ L+ L +S N F
Sbjct: 332 GELPMDTLLKMRGLKVLDLSFNEF 355
Score = 53.0 bits (128), Expect = 1e-07
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLT- 185
L + N ++ +A + L+ +++S NQ + LKSL L+L N T
Sbjct: 226 QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG-PIPPLP-LKSLQYLSLAENKFTG 283
Query: 186 YLPDGVFAELFRLRTLRISENSF 208
+PD + L L +S N F
Sbjct: 284 EIPDFLSGACDTLTGLDLSGNHF 306
Score = 51.1 bits (123), Expect = 4e-07
Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 12/103 (11%)
Query: 127 TELRLEQNDIT-ELPPKAFANYKRLRRIDLSKNQIS-KVAVDAFQGLKSLTSLTLNNNNL 184
L L N+ + ELP + L+ +DLS N+ S ++ SL +L L++NN
Sbjct: 321 ESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNF 380
Query: 185 T-YLPDGVF-AELFRLRTLRISENSF-------ICDC-HLSWL 217
+ + + L+ L + N F + +C L L
Sbjct: 381 SGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSL 423
Score = 51.1 bits (123), Expect = 5e-07
Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 7/84 (8%)
Query: 127 TELRLEQNDIT-ELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLT 185
L + N I+ ++ + L +D+S N S + +L L ++ N L+
Sbjct: 181 KHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFS-TGIPFLGDCSALQHLDISGNKLS 236
Query: 186 -YLPDGVFAELFRLRTLRISENSF 208
+ L+ L IS N F
Sbjct: 237 GDFSRA-ISTCTELKLLNISSNQF 259
Score = 49.9 bits (120), Expect = 1e-06
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 4/84 (4%)
Query: 127 TELRLEQNDIT-ELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLT 185
EL L+ N T ++PP +N L + LS N +S + L L L L N L
Sbjct: 397 QELYLQNNGFTGKIPP-TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455
Query: 186 -YLPDGVFAELFRLRTLRISENSF 208
+P + L TL + N
Sbjct: 456 GEIPQE-LMYVKTLETLILDFNDL 478
Score = 49.5 bits (119), Expect = 1e-06
Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 4/85 (4%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKV--AVDAFQGLKSLTSLTLNNNNL 184
L L + I F L +DLS+N +S + + L L +++N L
Sbjct: 80 ESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL 138
Query: 185 TY-LPDGVFAELFRLRTLRISENSF 208
+ +L L L +S NS
Sbjct: 139 DFPGKVSGGLKLNSLEVLDLSANSI 163
Score = 49.5 bits (119), Expect = 1e-06
Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 8/87 (9%)
Query: 127 TELRLEQNDIT-ELPPKAFANYKRLRRIDLSKNQISK---VAVDAFQGLKSLTSLTLNNN 182
L + N + L +DLS N IS V G L L ++ N
Sbjct: 129 KFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGN 188
Query: 183 NLT-YLPDGVFAELFRLRTLRISENSF 208
++ + + L L +S N+F
Sbjct: 189 KISGDVD---VSRCVNLEFLDVSSNNF 212
Score = 48.8 bits (117), Expect = 2e-06
Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 6/87 (6%)
Query: 127 TELRLEQNDITELP---PKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNN 183
T + L + + + L + LS + I+ +V F+ SLTSL L+ N+
Sbjct: 53 TSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHING-SVSGFKCSASLTSLDLSRNS 111
Query: 184 LT-YLPDGV-FAELFRLRTLRISENSF 208
L+ + L+ L +S N+
Sbjct: 112 LSGPVTTLTSLGSCSGLKFLNVSSNTL 138
Score = 47.6 bits (114), Expect = 5e-06
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 12/86 (13%)
Query: 129 LRLEQNDIT-ELPPKAFANYKRLRRIDLSKNQISKVAVDAF----QGLKSLTSLTLNNNN 183
L L+ ND+T E+P +N L I LS N+++ L++L L L+NN+
Sbjct: 471 LILDFNDLTGEIPS-GLSNCTNLNWISLSNNRLT----GEIPKWIGRLENLAILKLSNNS 525
Query: 184 LT-YLPDGVFAELFRLRTLRISENSF 208
+ +P + L L ++ N F
Sbjct: 526 FSGNIPAE-LGDCRSLIWLDLNTNLF 550
Score = 42.2 bits (100), Expect = 3e-04
Identities = 10/70 (14%), Positives = 21/70 (30%), Gaps = 2/70 (2%)
Query: 141 PKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLT-YLPDGVFAELFRLR 199
+ +++ F S+ L ++ N L+ Y+P + L
Sbjct: 601 SEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK-EIGSMPYLF 659
Query: 200 TLRISENSFI 209
L + N
Sbjct: 660 ILNLGHNDIS 669
Score = 37.2 bits (87), Expect = 0.010
Identities = 17/91 (18%), Positives = 29/91 (31%), Gaps = 18/91 (19%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQG--------LKSLTSLT 178
+ F N + +D+S N G + L L
Sbjct: 611 NPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNM--------LSGYIPKEIGSMPYLFILN 662
Query: 179 LNNNNLT-YLPDGVFAELFRLRTLRISENSF 208
L +N+++ +PD +L L L +S N
Sbjct: 663 LGHNDISGSIPDE-VGDLRGLNILDLSSNKL 692
Score = 36.0 bits (84), Expect = 0.021
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 141 PKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLT-YLPDGVFAELFRLR 199
PK + L ++L N IS D L+ L L L++N L +P + L L
Sbjct: 649 PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA-MSALTMLT 707
Query: 200 TLRISENSF 208
+ +S N+
Sbjct: 708 EIDLSNNNL 716
Score = 34.9 bits (81), Expect = 0.056
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 129 LRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLT-YL 187
L L NDI+ P + + L +DLS N++ A L LT + L+NNNL+ +
Sbjct: 661 LNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 720
Query: 188 PDG 190
P+
Sbjct: 721 PEM 723
Score = 31.8 bits (73), Expect = 0.50
Identities = 11/85 (12%), Positives = 24/85 (28%), Gaps = 14/85 (16%)
Query: 129 LRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQG-----LKSLTSLTLNNNN 183
L+L N + P + + L +DL+ N + G + + + N
Sbjct: 519 LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN--------GTIPAAMFKQSGK-IAANF 569
Query: 184 LTYLPDGVFAELFRLRTLRISENSF 208
+ + + N
Sbjct: 570 IAGKRYVYIKNDGMKKECHGAGNLL 594
Score = 30.3 bits (69), Expect = 1.4
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 5 LNNNNLT-YLPDGVFAELFRLRTLRISENSF 34
L N T +PD + L L +S N F
Sbjct: 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHF 306
Score = 29.1 bits (66), Expect = 3.3
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 5 LNNNNLT-YLPDGVFAELFRLRTLRISENSF 34
L++NN + LP ++ L+ L +S N F
Sbjct: 325 LSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear
protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 51.2 bits (123), Expect = 3e-08
Identities = 16/80 (20%), Positives = 33/80 (41%), Gaps = 3/80 (3%)
Query: 128 ELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYL 187
L +T + +L++++LS N++S + +LT L L+ N + L
Sbjct: 46 FLSTINVGLTSIAN--LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDL 103
Query: 188 PD-GVFAELFRLRTLRISEN 206
+L L++L +
Sbjct: 104 STIEPLKKLENLKSLDLFNC 123
Score = 48.9 bits (117), Expect = 3e-07
Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 3/85 (3%)
Query: 123 PEATTELRLEQNDITELP-PKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNN 181
P EL L+ + E ++ L + ++ +A L L L L++
Sbjct: 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN--LPKLNKLKKLELSD 73
Query: 182 NNLTYLPDGVFAELFRLRTLRISEN 206
N ++ + + + L L +S N
Sbjct: 74 NRVSGGLEVLAEKCPNLTHLNLSGN 98
Score = 47.0 bits (112), Expect = 1e-06
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVA-VDAFQGLKSLTSLTLNNNNLT 185
+L L N ++ L ++LS N+I ++ ++ + L++L SL L N +T
Sbjct: 67 KKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126
Query: 186 YLPD---GVFAELFRLRTL 201
L D VF L +L L
Sbjct: 127 NLNDYRENVFKLLPQLTYL 145
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder,
flagella, contractIle protein; NMR {Chlamydomonas
reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Length = 198
Score = 48.1 bits (115), Expect = 8e-07
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
EL I ++ + K + + LS N I K + + G+++L L+L N +
Sbjct: 28 VELHGMIPPIEKMD-ATLSTLKACKHLALSTNNIEK--ISSLSGMENLRILSLGRNLIKK 84
Query: 187 LPDGVFAELFRLRTLRISEN 206
+ + + A L L IS N
Sbjct: 85 I-ENLDAVADTLEELWISYN 103
Score = 47.4 bits (113), Expect = 2e-06
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
L L +N I ++ A L + +S NQI+ + + L +L L ++NN +T
Sbjct: 73 RILSLGRNLIKKIEN-LDAVADTLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITN 129
Query: 187 LPD-GVFAELFRLRTLRISEN 206
+ A L +L L ++ N
Sbjct: 130 WGEIDKLAALDKLEDLLLAGN 150
Score = 42.7 bits (101), Expect = 5e-05
Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
Query: 122 LPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVA-VDAFQGLKSLTSLTLN 180
+ + EL + N I L LR + +S N+I+ +D L L L L
Sbjct: 91 VADTLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLA 148
Query: 181 NNNLT 185
N L
Sbjct: 149 GNPLY 153
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 49.7 bits (119), Expect = 9e-07
Identities = 22/99 (22%), Positives = 38/99 (38%), Gaps = 19/99 (19%)
Query: 127 TELRLEQNDIT-----ELPPKAFANYKRLRRIDLSKNQISKVAV----DAFQGLKSLTSL 177
+++ QN I L + A + L+ +DL N + + A + +L L
Sbjct: 190 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL 249
Query: 178 TLNNNNLTYLPDGV--FAELFR------LRTLRISENSF 208
LN+ L+ G + F L+TLR+ N
Sbjct: 250 GLNDCLLS--ARGAAAVVDAFSKLENIGLQTLRLQYNEI 286
Score = 46.2 bits (110), Expect = 9e-06
Identities = 16/100 (16%), Positives = 28/100 (28%), Gaps = 18/100 (18%)
Query: 127 TELRLEQNDITELPPKAFA----NYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNN 182
E+ L N I + + + K L + S +V + + L+ L L
Sbjct: 35 KEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCP 94
Query: 183 NLTYL--------PDGV--FAELFR----LRTLRISENSF 208
L + P + L L + N
Sbjct: 95 KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL 134
Score = 45.5 bits (108), Expect = 2e-05
Identities = 19/119 (15%), Positives = 40/119 (33%), Gaps = 21/119 (17%)
Query: 104 ADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFA----NYKRLRRIDLSKNQ 159
A + + K L + +N + K +A +++ L + + +N
Sbjct: 143 ARALQELAVNKKAKNAPPL----RSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNG 198
Query: 160 I-----SKVAVDAFQGLKSLTSLTLNNNNLTYLPDGV--FAELFR----LRTLRISENS 207
I + ++ + L L L +N T G A + LR L +++
Sbjct: 199 IRPEGIEHLLLEGLAYCQELKVLDLQDNTFT--HLGSSALAIALKSWPNLRELGLNDCL 255
Score = 45.1 bits (107), Expect = 3e-05
Identities = 20/111 (18%), Positives = 29/111 (26%), Gaps = 31/111 (27%)
Query: 127 TELRLEQNDI----TELPP------KAFANYKRLRRIDLSKNQISKVAVDAF-QGLK--- 172
E+P +A +L + LS N A + L
Sbjct: 63 EIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHT 122
Query: 173 SLTSLTLNNNNLTYLPDGV--FAELFR-------------LRTLRISENSF 208
L L L+NN L P A + LR++ N
Sbjct: 123 PLEHLYLHNNGLG--PQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL 171
Score = 42.4 bits (100), Expect = 2e-04
Identities = 20/100 (20%), Positives = 35/100 (35%), Gaps = 18/100 (18%)
Query: 127 TELRLEQNDITELPPKAFA----NYKRLRRIDLSKNQISKVAV----DAFQGLKSLTSLT 178
L+ + IT K+ ++ I LS N I A + K L
Sbjct: 7 EGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAE 66
Query: 179 LNNNNLTYLPDGVFAELF----------RLRTLRISENSF 208
++ + D + L +L T+R+S+N+F
Sbjct: 67 FSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 106
Score = 37.4 bits (87), Expect = 0.007
Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 11/70 (15%)
Query: 127 TELRLEQNDITELPPKAFANY------KRLRRIDLSKNQISKVAVDAF-----QGLKSLT 175
EL L ++ A + L+ + L N+I AV + + L
Sbjct: 247 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLL 306
Query: 176 SLTLNNNNLT 185
L LN N +
Sbjct: 307 FLELNGNRFS 316
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor
complex, structural genomics, protein structure
initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens}
SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Length = 461
Score = 48.8 bits (117), Expect = 2e-06
Identities = 21/97 (21%), Positives = 36/97 (37%), Gaps = 17/97 (17%)
Query: 127 TELRLEQNDITELPPKAFA----NYKRLRRIDLSKNQISKVAVDAF-QGLK----SLTSL 177
+L+LE ++ + A + + +S N I++ V QGLK L +L
Sbjct: 145 EKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEAL 204
Query: 178 TLNNNNLTYLPDGV--FAELFR----LRTLRISENSF 208
L + +T D + LR L + N
Sbjct: 205 KLESCGVT--SDNCRDLCGIVASKASLRELALGSNKL 239
Score = 47.6 bits (114), Expect = 5e-06
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 17/97 (17%)
Query: 127 TELRLEQNDITELPPKAFA----NYKRLRRIDLSKNQISKVAVDAF-QGLKS----LTSL 177
+RL+ +TE K + L ++L N++ V V QGL++ + L
Sbjct: 31 QVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKL 90
Query: 178 TLNNNNLTYLPDGV--FAELFR----LRTLRISENSF 208
+L N LT G + R L+ L +S+N
Sbjct: 91 SLQNCCLT--GAGCGVLSSTLRTLPTLQELHLSDNLL 125
Score = 45.3 bits (108), Expect = 2e-05
Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 13/95 (13%)
Query: 127 TELRLEQNDITELPPKAFA----NYKRLRRIDLSKNQISKVAVDAF-QGLKS----LTSL 177
+L L+ +T + L+ + LS N + + +GL L L
Sbjct: 88 QKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKL 147
Query: 178 TLNNNNLTYLPDGVFAELFR----LRTLRISENSF 208
L +L+ A + R + L +S N
Sbjct: 148 QLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182
Score = 43.0 bits (102), Expect = 1e-04
Identities = 11/94 (11%), Positives = 32/94 (34%), Gaps = 14/94 (14%)
Query: 127 TELRLEQNDITELPPKAFANY-KRLRRIDLSKNQISKVAV----DAFQGLKSLTSLTLNN 181
L ++ ++++ ++ + + L +++ A + +L L L +
Sbjct: 6 QSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRS 65
Query: 182 NNLTYLPDGV--FAELFR-----LRTLRISENSF 208
N L GV + + ++ L +
Sbjct: 66 NELG--DVGVHCVLQGLQTPSCKIQKLSLQNCCL 97
Score = 42.3 bits (100), Expect = 2e-04
Identities = 19/97 (19%), Positives = 32/97 (32%), Gaps = 17/97 (17%)
Query: 127 TELRLEQNDITELPPKAFA----NYKRLRRIDLSKNQISKVAVDAF-QGLKS----LTSL 177
L ++ T F+ + L + +S N++ V QGL L L
Sbjct: 316 ESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVL 375
Query: 178 TLNNNNLTYLPDGV--FAELFR----LRTLRISENSF 208
L + +++ A LR L +S N
Sbjct: 376 WLADCDVS--DSSCSSLAATLLANHSLRELDLSNNCL 410
Score = 41.1 bits (97), Expect = 5e-04
Identities = 17/97 (17%), Positives = 32/97 (32%), Gaps = 17/97 (17%)
Query: 127 TELRLEQNDITELPPKAFA----NYKRLRRIDLSKNQISKVAVDAF-----QGLKSLTSL 177
L+LE +T + + LR + L N++ V + L +L
Sbjct: 202 EALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTL 261
Query: 178 TLNNNNLTYLPDGV--FAELFR----LRTLRISENSF 208
+ +T G + R L+ L ++ N
Sbjct: 262 WIWECGIT--AKGCGDLCRVLRAKESLKELSLAGNEL 296
Score = 41.1 bits (97), Expect = 5e-04
Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 18/111 (16%)
Query: 127 TELRLEQNDITELPPKAFA----NYKRLRRIDLSKNQISKVAVDAF-QGLK----SLTSL 177
L + + IT + L+ + L+ N++ + L L SL
Sbjct: 259 RTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESL 318
Query: 178 TLNNNNLTYLPDGV--FAELFR----LRTLRISENSFICDCHLSWLHRWLK 222
+ + + T F+ + L L+IS N + D + L + L
Sbjct: 319 WVKSCSFT--AACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLG 366
Score = 39.9 bits (94), Expect = 0.001
Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 9/68 (13%)
Query: 127 TELRLEQNDITELPPKAFA----NYKRLRRIDLSKNQISKVAVDAF-QGLKS----LTSL 177
L L D+++ + A LR +DLS N + + + ++ L L
Sbjct: 373 RVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQL 432
Query: 178 TLNNNNLT 185
L + +
Sbjct: 433 VLYDIYWS 440
Score = 39.2 bits (92), Expect = 0.002
Identities = 10/66 (15%), Positives = 23/66 (34%), Gaps = 9/66 (13%)
Query: 150 LRRIDLSKNQISKVAV-DAFQGLKSLTSLTLNNNNLTYLPDGV--FAELFR----LRTLR 202
++ +D+ ++S + L+ + L++ LT + R L L
Sbjct: 5 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLT--EARCKDISSALRVNPALAELN 62
Query: 203 ISENSF 208
+ N
Sbjct: 63 LRSNEL 68
Score = 33.8 bits (78), Expect = 0.097
Identities = 10/66 (15%), Positives = 20/66 (30%), Gaps = 11/66 (16%)
Query: 127 TELRLEQNDITELPPKAFA-----NYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNN 181
EL L N + + L ++ L S+ + L +L +
Sbjct: 401 RELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE------EMEDRLQALEKDK 454
Query: 182 NNLTYL 187
+L +
Sbjct: 455 PSLRVI 460
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral
signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A
{Homo sapiens}
Length = 372
Score = 47.8 bits (114), Expect = 3e-06
Identities = 18/95 (18%), Positives = 31/95 (32%), Gaps = 15/95 (15%)
Query: 127 TELRLEQNDITELPPKAFA-----NYKRLRRIDLSKNQISKVAVDAF-QGLKSLTSLTLN 180
+L L +T + A L ++L+ Q+ + L L
Sbjct: 75 RQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQ 134
Query: 181 NNNLTYLPDGV--FAELFR-----LRTLRISENSF 208
N+L P+ +L + TLR+S N
Sbjct: 135 LNSLG--PEACKDLRDLLLHDQCQITTLRLSNNPL 167
Score = 46.6 bits (111), Expect = 8e-06
Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 17/97 (17%)
Query: 127 TELRLEQNDITELPPKAFA-----NYKRLRRIDLSKNQISKVAVDAF-QGLK---SLTSL 177
+L L+ N + K + ++ + LS N ++ V +GL S+T L
Sbjct: 129 RKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHL 188
Query: 178 TLNNNNLTYLPDGV--FAELFR----LRTLRISENSF 208
+L + L +G+ A L+ L ++ N
Sbjct: 189 SLLHTGLG--DEGLELLAAQLDRNRQLQELNVAYNGA 223
Score = 45.9 bits (109), Expect = 1e-05
Identities = 16/96 (16%), Positives = 24/96 (25%), Gaps = 16/96 (16%)
Query: 127 TELRLEQNDITELPPKAFA----NYKRLRRIDLSKNQISKVAVDAF-QGLK---SLTSLT 178
T LRL N +T + + L + ++ L L L
Sbjct: 158 TTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELN 217
Query: 179 LNNNNLTYLPDGV--FAELFR----LRTLRISENSF 208
+ N A R L L + N
Sbjct: 218 VAYNGAG--DTAALALARAAREHPSLELLHLYFNEL 251
Score = 37.4 bits (87), Expect = 0.006
Identities = 10/70 (14%), Positives = 19/70 (27%), Gaps = 11/70 (15%)
Query: 127 TELRLEQNDITELPPKAFANY----KRLRRIDLSKNQISKVAVDAF-------QGLKSLT 175
EL + N + A A L + L N++S +G +
Sbjct: 214 QELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVV 273
Query: 176 SLTLNNNNLT 185
++
Sbjct: 274 VSLTEGTAVS 283
Score = 35.1 bits (81), Expect = 0.033
Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 10/69 (14%)
Query: 148 KRLRRIDLSKNQISKVAVDAF-QGLKS----LTSLTLNNNNLTYLPDGVFA---ELFRLR 199
LR+++L+ +++ V L S L + L + L P G+ R R
Sbjct: 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLD--PAGLRTLLPVFLRAR 129
Query: 200 TLRISENSF 208
L + NS
Sbjct: 130 KLGLQLNSL 138
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148,
structural genomics, PSI-2, protein structure
initiative; 2.10A {Legionella pneumophila subsp}
Length = 362
Score = 46.6 bits (111), Expect = 7e-06
Identities = 21/99 (21%), Positives = 33/99 (33%), Gaps = 19/99 (19%)
Query: 127 TELRLEQNDITELPPKAFA-----NYKRLRRIDLSKNQISKVAVDAF-QGLK----SLTS 176
T L L ND + F + ++L N + + D Q L ++ S
Sbjct: 112 TVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNS 171
Query: 177 LTLNNNNLTYLPDGV--FAELFR-----LRTLRISENSF 208
L L NNL A+ + +L +S N
Sbjct: 172 LNLRGNNLA--SKNCAELAKFLASIPASVTSLDLSANLL 208
Score = 46.2 bits (110), Expect = 9e-06
Identities = 22/97 (22%), Positives = 36/97 (37%), Gaps = 15/97 (15%)
Query: 127 TELRLEQNDITELPPKAFA-----NYKRLRRIDLSKNQISKVAVDAF-QGLKS----LTS 176
T L L N++ + + ++LS N + D Q L + +TS
Sbjct: 25 TSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTS 84
Query: 177 LTLNNNNLT-----YLPDGVFAELFRLRTLRISENSF 208
L L+ N L+ L + A F + L + N F
Sbjct: 85 LNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDF 121
Score = 46.2 bits (110), Expect = 1e-05
Identities = 19/99 (19%), Positives = 32/99 (32%), Gaps = 19/99 (19%)
Query: 127 TELRLEQNDITELPPKAFA-----NYKRLRRIDLSKNQISKVAVDAF-QGLK----SLTS 176
T L L N ++ + +DL N S + F Q S+TS
Sbjct: 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITS 142
Query: 177 LTLNNNNLTYLPDGV--FAELFR-----LRTLRISENSF 208
L L N+L ++ + +L + N+
Sbjct: 143 LNLRGNDLG--IKSSDELIQILAAIPANVNSLNLRGNNL 179
Score = 45.1 bits (107), Expect = 2e-05
Identities = 22/146 (15%), Positives = 44/146 (30%), Gaps = 23/146 (15%)
Query: 127 TELRLEQNDITELPPKAFA-----NYKRLRRIDLSKNQISKVAV----DAFQGLKSLTSL 177
T L L N + A + ++L N + ++ LK L ++
Sbjct: 199 TSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTV 258
Query: 178 TLNNNNLTYLPDGVFAELFR-------LRTLRISENSFICDCHLSWLHRWLKRYP----R 226
L+ + + + L + + + I H + ++
Sbjct: 259 YLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE-IHPSHSIPISNLIRELSGKADV 317
Query: 227 LGLYTKC--FAPSHIKGQNILDIPEH 250
L +C FA H L+IP+
Sbjct: 318 PSLLNQCLIFAQKHQTNIEDLNIPDE 343
Score = 42.0 bits (99), Expect = 2e-04
Identities = 17/98 (17%), Positives = 29/98 (29%), Gaps = 18/98 (18%)
Query: 127 TELRLEQNDITELPPKAFA-----NYKRLRRIDLSKNQISKVAVDAF-QGLKS----LTS 176
L L N++ A + +DLS N + + S + S
Sbjct: 170 NSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVS 229
Query: 177 LTLNNNNLTYLPDGV--FAELFR----LRTLRISENSF 208
L L N L + L L+T+ + +
Sbjct: 230 LNLCLNCLH--GPSLENLKLLKDSLKHLQTVYLDYDIV 265
Score = 37.4 bits (87), Expect = 0.006
Identities = 15/79 (18%), Positives = 30/79 (37%), Gaps = 14/79 (17%)
Query: 142 KAFANYKRLRRIDLSKNQISKVAVDAF-QGLK----SLTSLTLNNNNLTYLPDGV--FAE 194
+ + + +DLS N + ++ Q S+TSL L+ N+L +
Sbjct: 16 EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLG--FKNSDELVQ 73
Query: 195 LFR-----LRTLRISENSF 208
+ + +L +S N
Sbjct: 74 ILAAIPANVTSLNLSGNFL 92
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG;
1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Length = 313
Score = 45.2 bits (108), Expect = 2e-05
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 11/87 (12%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQ----ISKVAVDAFQGLKSLTSLTLNNN 182
+ L +N + F + K ++I L+KN + KV K+L L L NN
Sbjct: 200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVG-----LSKNLNGLDLRNN 254
Query: 183 NLT-YLPDGVFAELFRLRTLRISENSF 208
+ LP G +L L +L +S N+
Sbjct: 255 RIYGTLPQG-LTQLKFLHSLNVSFNNL 280
Score = 42.5 bits (101), Expect = 1e-04
Identities = 20/100 (20%), Positives = 41/100 (41%), Gaps = 10/100 (10%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLT- 185
L + +++ P + K L +D S N +S + L +L +T + N ++
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163
Query: 186 YLPDGVFAELFRLRT-LRISENSF-------ICDCHLSWL 217
+PD +L T + IS N + +L+++
Sbjct: 164 AIPDSYG-SFSKLFTSMTISRNRLTGKIPPTFANLNLAFV 202
Score = 42.1 bits (100), Expect = 2e-04
Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 4/88 (4%)
Query: 122 LPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNN 181
+ T + + +N +T P FAN L +DLS+N + A F K+ + L
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230
Query: 182 NNLT-YLPDGVFAELFRLRTLRISENSF 208
N+L L L L + N
Sbjct: 231 NSLAFDLGK--VGLSKNLNGLDLRNNRI 256
Score = 41.4 bits (98), Expect = 3e-04
Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Query: 141 PKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLT-YLPDGVFAELFRLR 199
P A A +L + ++ +S D +K+L +L + N L+ LP + L L
Sbjct: 94 PPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS-ISSLPNLV 152
Query: 200 TLRISENSF 208
+ N
Sbjct: 153 GITFDGNRI 161
Score = 39.8 bits (94), Expect = 0.001
Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 5/72 (6%)
Query: 141 PKAFANYKRLRRIDLSKNQISKVAV--DAFQGLKSLTSLTL-NNNNLT-YLPDGVFAELF 196
R+ +DLS + K + L L L + NNL +P A+L
Sbjct: 43 CDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLT 101
Query: 197 RLRTLRISENSF 208
+L L I+ +
Sbjct: 102 QLHYLYITHTNV 113
Score = 39.4 bits (93), Expect = 0.001
Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 8/92 (8%)
Query: 127 TELRLEQNDIT-ELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLT 185
++ L +N + +L K L +DL N+I LK L SL ++ NNL
Sbjct: 224 QKIHLAKNSLAFDLGK--VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281
Query: 186 -YLPD-GVFAELFRLRTLRISENSFICDCHLS 215
+P G R + N +C L
Sbjct: 282 GEIPQGGNLQ---RFDVSAYANNKCLCGSPLP 310
Score = 27.5 bits (62), Expect = 9.3
Identities = 14/60 (23%), Positives = 20/60 (33%), Gaps = 5/60 (8%)
Query: 153 IDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLT---YLPDGVFAELFRLRTLRIS-ENSF 208
D V D + +L L+ NL +P + A L L L I N+
Sbjct: 31 TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL-ANLPYLNFLYIGGINNL 89
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.4 bits (107), Expect = 3e-05
Identities = 75/480 (15%), Positives = 130/480 (27%), Gaps = 193/480 (40%)
Query: 24 LRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGP 83
R L +S S + S + + +F P
Sbjct: 6 TRPLTLSHGSLEHVLLVP-------------------TASFFIASQLQE----QFNKILP 42
Query: 84 VEKPTGECAA--EPSCP---------HPCRCADGIVDCREKGLNK--VPILLPEATTELR 130
+PT AA EP+ P + + +V+ + G + + L E
Sbjct: 43 --EPTEGFAADDEPTTPAELVGKFLGY---VSS-LVEPSKVGQFDQVLNLCLTEFENCY- 95
Query: 131 LEQNDI----TELPPKA----------FANYKRLRRID---LSKNQISKV--AVDA---- 167
LE NDI +L + NY R + K S + AV
Sbjct: 96 LEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQ 155
Query: 168 ----F--QGLKSLTSLTLNNNNLTYLPDGVFAELFR-----LRTL---------RISENS 207
F QG N Y + +L++ + L + +
Sbjct: 156 LVAIFGGQG-----------NTDDYFEE--LRDLYQTYHVLVGDLIKFSAETLSELIRTT 202
Query: 208 FICDCHLSW---LHRWLKR--------Y--------PRLGL------YTKC----FAP-- 236
+ + + WL+ Y P +G+ F P
Sbjct: 203 LDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGE 262
Query: 237 --SHIKG-----QNILD---IPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPT 286
S++KG Q ++ I S E+ R+ + F
Sbjct: 263 LRSYLKGATGHSQGLVTAVAI------AETDSWESFFVSVRKAITVLFF----------I 306
Query: 287 GECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYIS 346
G + P+ + D E VP + M+SI + + + Y+
Sbjct: 307 G-VRCYEAYPNTSLPPSILEDSLENN-EGVP----------SPMLSISNLTQEQVQDYV- 353
Query: 347 NNFKRWTNRSRRLEQNDITEL-------------PPKA-FANYKRLRRIR----LEQNDI 388
TN L E+ PP++ + LR+ + L+Q+ I
Sbjct: 354 ----NKTNSH--LPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRI 407
Score = 39.6 bits (92), Expect = 0.002
Identities = 58/402 (14%), Positives = 107/402 (26%), Gaps = 142/402 (35%)
Query: 8 NNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKG 67
N Y F EL R L + + + D + + L R L + +G
Sbjct: 165 NTDDY-----FEEL---RDLYQTYHVLVGDL-IKFSAETLSELIRTTLDAE---KVFTQG 212
Query: 68 QNIL-------DIPEHEFKCSGPVEKPTGECAAEPSCPHPC--RCADGIVDCREKGLNK- 117
NIL + P+ ++ S P+ SCP + A +V + G
Sbjct: 213 LNILEWLENPSNTPDKDYLLSIPI-----------SCPLIGVIQLAHYVVTAKLLGFTPG 261
Query: 118 -----------------VPILLPEATTELRLEQNDI-------------------TELPP 141
+ + E + + T LPP
Sbjct: 262 ELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPP 321
Query: 142 KAFANYKR---------LRRIDLSKNQISKVAVDAFQGLKSL-----TSLTLNN--NN-- 183
+ L +L++ Q+ V+ L ++L N N
Sbjct: 322 SILEDSLENNEGVPSPMLSISNLTQEQVQD-YVNKTN--SHLPAGKQVEISLVNGAKNLV 378
Query: 184 LTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCF----APSH- 238
++ P ++ LR + S +R + F +P H
Sbjct: 379 VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFS------ERKLKFSN---RFLPVASPFHS 429
Query: 239 -----IKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKP-TGE--CA 290
D+ ++ + + +I PV G
Sbjct: 430 HLLVPASDLINKDLVKNNVSFNAKDI----QI---------------PVYDTFDGSDLRV 470
Query: 291 AEPSCPHPCRCADGIVDCREKGLNKVPILLPEAT-TELTYMV 331
S IVDC + ++P+ T + T+++
Sbjct: 471 LSGSISER------IVDC----IIRLPVKWETTTQFKATHIL 502
Score = 29.2 bits (65), Expect = 3.4
Identities = 21/144 (14%), Positives = 45/144 (31%), Gaps = 42/144 (29%)
Query: 173 SLTSLTLNNNNLTY---LPDGVFAELFRLR-----TLRISENSFICD------CHLSWLH 218
S LTL++ +L + +P F +L+ L F D L +
Sbjct: 5 STRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAEL--VG 62
Query: 219 RWL------------KRYPR-LGLYTKCFAPSHIKGQNILDIPEHEFKCS-----GSSME 260
++L ++ + L L F +++G +I H +++
Sbjct: 63 KFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI-----HALAAKLLQENDTTLV 117
Query: 261 TRSKI---YREECSTDFHPYNSCP 281
++ Y P++
Sbjct: 118 KTKELIKNYITARIMAKRPFDKKS 141
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein
binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Length = 185
Score = 43.4 bits (103), Expect = 3e-05
Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 17/96 (17%)
Query: 127 TELRL-EQNDITELPPKAFANY----KRLRRIDLSKNQISKVAVDAF-QGLK---SLTSL 177
E+ L +I KA A +++ + + + A + LK +L SL
Sbjct: 39 EEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSL 98
Query: 178 TLNNNNLTYLPDGV--FAELFR----LRTLRISENS 207
+ +N ++ G+ E + L LRI S
Sbjct: 99 NVESNFIS--GSGILALVEALQSNTSLIELRIDNQS 132
Score = 41.9 bits (99), Expect = 9e-05
Identities = 14/95 (14%), Positives = 29/95 (30%), Gaps = 14/95 (14%)
Query: 127 TELRLEQNDITELPPKAFANY----KRLRRIDLSKNQISKVAVDAF-QGLK---SLTSLT 178
+ + + A A L+ +++ N IS + A + L+ SL L
Sbjct: 68 KKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELR 127
Query: 179 LNNNNLTYLPDGV--FAELFR----LRTLRISENS 207
++N + + A + L
Sbjct: 128 IDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162
Score = 33.0 bits (76), Expect = 0.10
Identities = 16/92 (17%), Positives = 23/92 (25%), Gaps = 19/92 (20%)
Query: 127 TELRLEQNDITELPPKAFANY----KRLR--RIDLSKNQISKVAVDAF-QGLK---SLTS 176
L +E N I+ A L RID + L+ +L
Sbjct: 96 KSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLK 155
Query: 177 LTLNNNNLTYLPDGVFAE-------LFRLRTL 201
+ P + L R R L
Sbjct: 156 FGYHFTQQG--PRLRASNAMMNNNDLVRKRRL 185
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain,
leucine rich repeats, BFR43, structural genomics, PSI-2;
1.95A {Bacteroides fragilis}
Length = 362
Score = 41.1 bits (95), Expect = 5e-04
Identities = 9/66 (13%), Positives = 22/66 (33%), Gaps = 7/66 (10%)
Query: 127 TELRLEQNDITELPPKAFANY---KRLRRIDLSKNQISKVAVDAF----QGLKSLTSLTL 179
L + + + + F +L +D+S ++ +K L + +
Sbjct: 255 KWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINM 314
Query: 180 NNNNLT 185
N L+
Sbjct: 315 KYNYLS 320
Score = 33.4 bits (75), Expect = 0.13
Identities = 7/56 (12%), Positives = 18/56 (32%), Gaps = 5/56 (8%)
Query: 127 TELRLEQNDITELPPKAFA----NYKRLRRIDLSKNQISKVAVDAF-QGLKSLTSL 177
+ + +T+ + K L+ I++ N +S + L +
Sbjct: 282 ETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLPMKIDV 337
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein,
BIG3 domain, LRR domain, STRU genomics; 2.05A
{Bacteroides ovatus} PDB: 4fd0_A
Length = 401
Score = 39.3 bits (92), Expect = 0.001
Identities = 17/78 (21%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 134 NDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFA 193
+ E+ +AF +L+ I++ +N +S + +AF+ +T++ L N +T + F
Sbjct: 212 VTLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPNG-VTNIASRAFY 268
Query: 194 ELFRLRTLRISENSFICD 211
L + ++F D
Sbjct: 269 YCPELAEVTTYGSTFNDD 286
Score = 39.3 bits (92), Expect = 0.002
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 136 ITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAEL 195
+ +L F L++ DLSK +I+K+ F + + L L + F +
Sbjct: 168 LEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVY-AGIEEVLL-PVTLKEIGSQAFLKT 225
Query: 196 FRLRTLRISEN 206
+L+T+ I EN
Sbjct: 226 SQLKTIEIPEN 236
Score = 37.0 bits (86), Expect = 0.009
Identities = 13/74 (17%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 134 NDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFA 193
N + +P AF N + + ++ L++ + + AF ++ + + L L + +F
Sbjct: 122 NSVKSIPKDAFRNSQ-IAKVVLNEG-LKSIGDMAFFN-STVQEIVFPST-LEQLKEDIFY 177
Query: 194 ELFRLRTLRISENS 207
+ L+ +S+
Sbjct: 178 YCYNLKKADLSKTK 191
Score = 36.6 bits (85), Expect = 0.010
Identities = 11/59 (18%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Query: 134 NDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVF 192
+ + P +L R ++ ++ I + G + +T LT+ N+T + F
Sbjct: 286 DPEAMIHPYCLEGCPKLARFEIPES-IRILGQGLLGGNRKVTQLTI-PANVTQINFSAF 342
Score = 35.9 bits (83), Expect = 0.022
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Query: 134 NDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVF 192
+ + AF N ++ I + ++ D F +L L+ +T LP F
Sbjct: 144 EGLKSIGDMAFFNST-VQEIVFPST-LEQLKEDIFYYCYNLKKADLSKTKITKLPASTF 200
Score = 34.7 bits (80), Expect = 0.054
Identities = 11/78 (14%), Positives = 26/78 (33%), Gaps = 7/78 (8%)
Query: 134 NDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNN-----NLTYLP 188
+++ + +AF + + L ++ +A AF L +T + +
Sbjct: 235 ENVSTIGQEAFRESG-ITTVKLPNG-VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIH 292
Query: 189 DGVFAELFRLRTLRISEN 206
+L I E+
Sbjct: 293 PYCLEGCPKLARFEIPES 310
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed
beta-alpha superhelix, leucine-rich repeat structural
genomics; HET: MSE PG4; 1.99A {Bacteroides
thetaiotaomicron}
Length = 329
Score = 39.0 bits (91), Expect = 0.002
Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 3/82 (3%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLT-SLTLNNNNLT 185
L + + + T +P FA K L +I L N + + F L +L L ++T
Sbjct: 229 VSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLEL-PASVT 286
Query: 186 YLPDGVFAELFRLRTLRISENS 207
+ G F LR + + +
Sbjct: 287 AIEFGAFMGCDNLRYVLATGDK 308
Score = 36.7 bits (85), Expect = 0.010
Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 5/65 (7%)
Query: 134 NDITELPPKAF----ANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPD 189
+L F L +D+SK + + F K L + L +NL +
Sbjct: 208 TIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKL-PHNLKTIGQ 266
Query: 190 GVFAE 194
VF+
Sbjct: 267 RVFSN 271
Score = 35.1 bits (81), Expect = 0.036
Identities = 13/62 (20%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 134 NDITELPPKAFANYKRLRR-IDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVF 192
+++ + + F+N RL ++L + ++ + AF G +L + + +T L D +F
Sbjct: 259 HNLKTIGQRVFSNCGRLAGTLELPAS-VTAIEFGAFMGCDNLRYVLATGDKITTLGDELF 317
Query: 193 AE 194
Sbjct: 318 GN 319
Score = 34.4 bits (79), Expect = 0.062
Identities = 9/52 (17%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Query: 136 ITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYL 187
+ + + L ++ LS+ I + AF+G +L + L
Sbjct: 89 FSNVVNGVTKGKQTLEKVILSEK-IKNIEDAAFKGCDNLKICQIRKKTAPNL 139
Score = 28.6 bits (64), Expect = 3.3
Identities = 13/92 (14%), Positives = 29/92 (31%), Gaps = 9/92 (9%)
Query: 120 ILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTL 179
I +P +++ +N AF + L + K+ + + +
Sbjct: 151 IFIPLGSSDAYRFKNRWEHF---AFIEGEPLETTIQVGA-MGKLEDEIMKAGLQPRDINF 206
Query: 180 NNNNLTYLPDGVFAELFR----LRTLRISENS 207
L + F + L +L IS+ +
Sbjct: 207 -LTIEGKLDNADFKLIRDYMPNLVSLDISKTN 237
Score = 28.6 bits (64), Expect = 3.9
Identities = 7/44 (15%), Positives = 17/44 (38%)
Query: 134 NDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSL 177
+T + AF LR + + ++I+ + + F +
Sbjct: 283 ASVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLI 326
Score = 27.4 bits (61), Expect = 8.5
Identities = 12/79 (15%), Positives = 22/79 (27%), Gaps = 8/79 (10%)
Query: 134 NDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLT------YL 187
I + AF L+ + K + +A S+T++ + +
Sbjct: 110 EKIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALA--DSVTAIFIPLGSSDAYRFKNRW 167
Query: 188 PDGVFAELFRLRTLRISEN 206
F E L T
Sbjct: 168 EHFAFIEGEPLETTIQVGA 186
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics secsg; 1.80A {Caenorhabditis
elegans} SCOP: c.10.1.1
Length = 197
Score = 37.9 bits (88), Expect = 0.002
Identities = 13/98 (13%), Positives = 33/98 (33%), Gaps = 12/98 (12%)
Query: 127 TELRLEQNDITELPPKAFANY----KRLRRIDLSKNQISKVAVDAF-QGLK---SLTSLT 178
+ L I++ + LR +++ N ++ + + S+
Sbjct: 73 EKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFK 132
Query: 179 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSW 216
+N + L + V ++ I EN + +S+
Sbjct: 133 ADNQRQSVLGNQVEMDMMMA----IEENESLLRVGISF 166
Score = 34.8 bits (80), Expect = 0.027
Identities = 12/76 (15%), Positives = 29/76 (38%), Gaps = 11/76 (14%)
Query: 127 TELRLEQ-NDITELPPKAFANY----KRLRRIDLSKNQISKVAVDAF-QGLK---SLTSL 177
E+ + +++ ++ K + + L+ IS + ++ SL L
Sbjct: 44 KEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVL 103
Query: 178 TLNNNNLTYLPDGVFA 193
+ +N LT P+ +
Sbjct: 104 NVESNFLT--PELLAR 117
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport
element (CTE), RNA recogni motif (RRM); HET: GTP CCC;
2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A
1fo1_A
Length = 267
Score = 36.1 bits (83), Expect = 0.013
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
Query: 110 CREKGLNKVPILLPEATTELRLEQNDITELPP--KAFANYKRLRRIDLSKNQISKVA-VD 166
C L + +PE + L L N + L L+ ++LS N++ +D
Sbjct: 157 CMAATLRIIEENIPELLS-LNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELD 215
Query: 167 AFQGLKSLTSLTLNNNNLT 185
+GLK L L L+ N+L
Sbjct: 216 KIKGLK-LEELWLDGNSLC 233
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0,
hydrogen ION transport, inner membrane, ION transport,
membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A
3dze_A 3e2j_A
Length = 176
Score = 34.8 bits (80), Expect = 0.021
Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 8/93 (8%)
Query: 133 QNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNN------LTY 186
Q D LP YK ++ ID + + I + D +GL+ + + L + L
Sbjct: 47 QKDYNHLPTGPLDKYK-IQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLER 105
Query: 187 LPDGVFAELFRLRTLRISENSFICDCHLSWLHR 219
L + + + I + D + LH
Sbjct: 106 LSQLENLQK-SMLEMEIISCGNVTDKGIIALHH 137
Score = 27.9 bits (62), Expect = 4.4
Identities = 13/97 (13%), Positives = 31/97 (31%), Gaps = 18/97 (18%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSK-NQISKVAVDAFQGLKSLTSLTLNNNNLT 185
+ + I + + + +I L K + I D L+ L+ L ++
Sbjct: 64 QAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIE----DG--CLERLSQLENLQKSML 117
Query: 186 YL---------PDGV--FAELFRLRTLRISENSFICD 211
+ G+ L+ L +S+ + +
Sbjct: 118 EMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKE 154
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR,
cell cycle, protein turnover COM ligase-ligase inhibitor
complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1
c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Length = 336
Score = 34.9 bits (80), Expect = 0.037
Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 1/83 (1%)
Query: 136 ITELPPKAFANYKRLRRIDLSKNQISKVAVDAF-QGLKSLTSLTLNNNNLTYLPDGVFAE 194
+ P + R++ +DLS + I + L +L+L L+ A+
Sbjct: 81 FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK 140
Query: 195 LFRLRTLRISENSFICDCHLSWL 217
L L +S S + L L
Sbjct: 141 NSNLVRLNLSGCSGFSEFALQTL 163
>3kya_A Putative phosphatase; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS hydrolase; HET: MSE; 1.77A {Bacteroides
thetaiotaomicron}
Length = 496
Score = 33.4 bits (75), Expect = 0.14
Identities = 8/48 (16%), Positives = 16/48 (33%)
Query: 143 AFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDG 190
+ +K ++ IDL +S + S+ N Y +
Sbjct: 157 CYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEA 204
>1v85_A Similar to ring finger protein 36; apoptosis, neuron, cell death,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Length = 91
Score = 30.3 bits (68), Expect = 0.24
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Query: 218 HRWLKRY-PRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSME---TRSKIYRE 268
WL++ P LY F + G+ +L + E EF + ++E R I E
Sbjct: 26 VLWLEQLGPWASLYRDRFLSERVNGRLLLTLTEEEFSRAPYTIENSSHRRVILTE 80
Score = 26.5 bits (58), Expect = 5.1
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 44 HRWLKRY-PRLGLYTKCFAPSHIKGQNILDIPEHEFK 79
WL++ P LY F + G+ +L + E EF
Sbjct: 26 VLWLEQLGPWASLYRDRFLSERVNGRLLLTLTEEEFS 62
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.1 bits (72), Expect = 0.38
Identities = 40/303 (13%), Positives = 77/303 (25%), Gaps = 73/303 (24%)
Query: 8 NNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKG 67
L Y D + S++S + + L+R + Y C
Sbjct: 203 QKLLYQIDPNWTSR--------SDHSSNIKLRIHSIQAELRRLLKSKPYENCLL------ 248
Query: 68 QNILD---IPEH----EFKC--------SGPVEKPTGECAAEPSCPHPCR---------- 102
+L + C + + S H
Sbjct: 249 --VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306
Query: 103 CADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSK-NQIS 161
+DCR + L P E T + I E A + + ++ K I
Sbjct: 307 LLK-YLDCRPQDL---P---REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359
Query: 162 KVAVDAFQGLKSLTSLTLNNN--NLTYLPDGVFAELFRLRTL-----RISENSFICDCH- 213
+ +++ L L+ P L + + + H
Sbjct: 360 ESSLNV------LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413
Query: 214 LSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTD 273
S + + K + + + + +K +N + H S+ I + S D
Sbjct: 414 YSLVEKQPKES-TISIPS-IYLELKVKLENEYAL--HR------SIVDHYNIPKTFDSDD 463
Query: 274 FHP 276
P
Sbjct: 464 LIP 466
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.64
Identities = 9/22 (40%), Positives = 9/22 (40%), Gaps = 7/22 (31%)
Query: 169 QGLKSL-TSLTLNNNNLTYLPD 189
Q LK L SL L Y D
Sbjct: 20 QALKKLQASLKL------YADD 35
>1y4w_A EXO-inulinase; glycoside hydrolase FAMI crystallographic structure,
native structure, hydrolase; HET: NAG; 1.55A
{Aspergillus awamori} SCOP: b.29.1.19 b.67.2.3 PDB:
1y9g_A* 1y9m_A*
Length = 518
Score = 29.3 bits (66), Expect = 2.5
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 8/46 (17%)
Query: 329 YMV---SIDRVDKVLLYSYISNNFKRWTNRSRRLEQNDIT---ELP 368
V SI + K+ +Y+ S+N K W S N E P
Sbjct: 181 KWVVVTSIAELHKLAIYT--SDNLKDWKLVSEFGPYNAQGGVWECP 224
>3sc7_X Inulinase; glycoside hydrolase family 32, glycosylation cytosol,
hydrolase; HET: MAN NAG EPE; 1.50A {Aspergillus ficuum}
Length = 516
Score = 29.0 bits (65), Expect = 3.5
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Query: 329 YMV-SIDRVDKVLLYSYISNNFKRWTNRS 356
MV + DK+ ++ S + WT +S
Sbjct: 189 IMVLAHGGQDKLSFWT--SADTINWTWQS 215
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin
ligase, SCF, protein binding; HET: OGK; 2.80A
{Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Length = 592
Score = 28.8 bits (64), Expect = 4.3
Identities = 10/79 (12%), Positives = 26/79 (32%), Gaps = 2/79 (2%)
Query: 127 TELRLEQNDITELPPKAFANY-KRLRRIDLSKNQISKVAVDAF-QGLKSLTSLTLNNNNL 184
+ L ++ F+ L+++++ S+ A+ A L SL L +
Sbjct: 466 RWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRA 525
Query: 185 TYLPDGVFAELFRLRTLRI 203
+ + + +
Sbjct: 526 SMTGQDLMQMARPYWNIEL 544
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat,
signaling protein; HET: IHP; 1.80A {Arabidopsis
thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B*
3c6o_B* 3c6p_B*
Length = 594
Score = 28.3 bits (63), Expect = 5.0
Identities = 9/60 (15%), Positives = 20/60 (33%), Gaps = 3/60 (5%)
Query: 145 ANYKRLRRIDLSKNQISKVAVDAF-QGLKSLTSLTLNNNNLTYLPDGVF--AELFRLRTL 201
+ + +R + +S +S A Q + L ++ +F RT+
Sbjct: 503 SKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPDSRPESCPVERVFIYRTV 562
Score = 27.9 bits (62), Expect = 6.4
Identities = 8/61 (13%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 127 TELRLEQNDITELPPKAFANY-KRLRRIDLSK-NQISKVAVDAFQGLKSLTSLTLNNNNL 184
L + ++L + LR++++ K + L+++ SL +++ ++
Sbjct: 459 EMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518
Query: 185 T 185
+
Sbjct: 519 S 519
>3qtl_D Kazal-type serine protease inhibitor SPI-1; serine protease -kazal
type serine protease inhibitor comple hydrolase
inhibitor; 2.60A {Carcinoscorpius rotundicauda}
Length = 75
Score = 26.0 bits (57), Expect = 6.7
Identities = 9/55 (16%), Positives = 15/55 (27%), Gaps = 14/55 (25%)
Query: 264 KIYREECSTDFHPYNS--------CPVEKPTGECAAEPSCPHPCR------CADG 304
Y+ C + Y++ + C CP C C +G
Sbjct: 5 HTYKPVCGANGEVYDNECFLNKAGIEPAESWETCRGHELCPSVCTEEYDPVCVEG 59
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.138 0.441
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,375,528
Number of extensions: 375368
Number of successful extensions: 3773
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2301
Number of HSP's successfully gapped: 1336
Length of query: 405
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 309
Effective length of database: 4,021,377
Effective search space: 1242605493
Effective search space used: 1242605493
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.0 bits)