RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12210
(405 letters)
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
Length = 305
Score = 100 bits (249), Expect = 1e-24
Identities = 61/310 (19%), Positives = 95/310 (30%), Gaps = 25/310 (8%)
Query: 95 PSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRID 154
P CP C+C +V C + GL KVP LP T L L+ N ITE+ F N K L +
Sbjct: 2 PVCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLI 61
Query: 155 LSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHL 214
L N+ISK++ AF L L L L+ N L LP+ + L LR
Sbjct: 62 LINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFN 121
Query: 215 SWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDF 274
+ L + +G L + + +++ T + +
Sbjct: 122 GLNQMIVVELGTNPLKSSGIENGAFQGMKKL----SYIRIADTNITTIPQGLPPSLTELH 177
Query: 275 HPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSID 334
N + ++ V T L + +
Sbjct: 178 LDGNKITKVDA---------ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN 228
Query: 335 RVDKVLLYSYISNNFKRWTNRSRRLEQNDITELPPKAFA------NYKRLRRIRLEQNDI 388
L + L N+I+ + F + L N +
Sbjct: 229 NK----LVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 284
Query: 389 T--ELPPKAF 396
E+ P F
Sbjct: 285 QYWEIQPSTF 294
Score = 60.1 bits (144), Expect = 9e-11
Identities = 34/113 (30%), Positives = 45/113 (39%), Gaps = 30/113 (26%)
Query: 293 PSCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRW 352
P CP C+C +V C + GL KVP LP T L
Sbjct: 2 PVCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALL------------------------- 36
Query: 353 TNRSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
L+ N ITE+ F N K L + L N I+++ P AFA +L R+
Sbjct: 37 -----DLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL 84
Score = 46.2 bits (108), Expect = 4e-06
Identities = 38/221 (17%), Positives = 76/221 (34%), Gaps = 14/221 (6%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSH 64
L NN +T + DG F L L TL + + +L + S
Sbjct: 38 LQNNKITEIKDGDFKNLKNLHTLILI-----NNKISKISPGAFAPLVKL----ERLYLSK 88
Query: 65 IKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPE 124
+ + + + + E + + K
Sbjct: 89 NQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 148
Query: 125 AT--TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNN 182
+ +R+ +IT +P + L + L N+I+KV + +GL +L L L+ N
Sbjct: 149 MKKLSYIRIADTNITTIPQGLPPS---LTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 205
Query: 183 NLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKR 223
+++ + +G A LR L ++ N + H++++
Sbjct: 206 SISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQV 246
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster)
[TaxId: 7227]}
Length = 192
Score = 84.1 bits (206), Expect = 1e-19
Identities = 57/189 (30%), Positives = 86/189 (45%), Gaps = 25/189 (13%)
Query: 97 CPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQN-DITELPPKAFANYKRLRRIDL 155
CP C C VDC +GL ++P +P TTEL L N F L +++L
Sbjct: 2 CPAMCHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLEL 61
Query: 156 SK------------------------NQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGV 191
+ N+I +++ F GL L +L L +N ++ + G
Sbjct: 62 KRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGS 121
Query: 192 FAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHE 251
F L L +L ++ N F C+CHL+W WL++ G +C APS ++ I D+P E
Sbjct: 122 FEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSE 181
Query: 252 FKCSGSSME 260
FKCS + E
Sbjct: 182 FKCSSENSE 190
Score = 54.4 bits (129), Expect = 2e-09
Identities = 30/130 (23%), Positives = 51/130 (39%), Gaps = 19/130 (14%)
Query: 295 CPHPCRCADGIVDCREKGLNKVPILLPEATTEL-------------------TYMVSIDR 335
CP C C VDC +GL ++P +P TTEL ++V ++
Sbjct: 2 CPAMCHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLEL 61
Query: 336 VDKVLLYSYISNNFKRWTNRSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKA 395
L + + +L +N I E+ K F +L+ + L N I+ + P +
Sbjct: 62 KRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGS 121
Query: 396 FANYKRLRRM 405
F + L +
Sbjct: 122 FEHLNSLTSL 131
Score = 52.9 bits (125), Expect = 8e-09
Identities = 29/79 (36%), Positives = 44/79 (55%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSH 64
L +N ++ + G F L L +L ++ N F C+CHL+W WL++ G +C APS
Sbjct: 109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSK 168
Query: 65 IKGQNILDIPEHEFKCSGP 83
++ I D+P EFKCS
Sbjct: 169 VRDVQIKDLPHSEFKCSSE 187
Score = 30.9 bits (68), Expect = 0.16
Identities = 21/208 (10%), Positives = 46/208 (22%), Gaps = 36/208 (17%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSH 64
L +P + L +++N R +
Sbjct: 15 CTGRGLKEIPRDIPL---HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEP 71
Query: 65 IKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPE 124
+ I E + + E
Sbjct: 72 NAFEGASHIQELQLGENKIKEISNKMFLGLHQLKT------------------------- 106
Query: 125 ATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNL 184
L L N I+ + P +F + L ++ + + L +LN
Sbjct: 107 ----LNLYDNQISCVMPGSFEHLNSLTSLN-LASNPFNCNCHLAWFAEWLRKKSLNGGAA 161
Query: 185 TYLPDGVFAELFRLRTLRISENSFICDC 212
G +++ ++ + + F C
Sbjct: 162 RC---GAPSKVRDVQIKDLPHSEFKCSS 186
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 85.2 bits (209), Expect = 3e-19
Identities = 49/255 (19%), Positives = 92/255 (36%), Gaps = 17/255 (6%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSH 64
L+ N ++++P F L L + N ++
Sbjct: 39 LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA-----------LLEQLDL 87
Query: 65 IKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPE 124
+ + F G + + + N + L +
Sbjct: 88 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD 147
Query: 125 ATT------ELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLT 178
L L N I+ +P +AF L R+ L +N+++ V AF+ L L +L
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207
Query: 179 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSH 238
L NNL+ LP A L L+ LR+++N ++CDC L WL+++ C P
Sbjct: 208 LFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQR 267
Query: 239 IKGQNILDIPEHEFK 253
+ G+++ + ++ +
Sbjct: 268 LAGRDLKRLAANDLQ 282
Score = 61.8 bits (148), Expect = 2e-11
Identities = 27/128 (21%), Positives = 43/128 (33%), Gaps = 4/128 (3%)
Query: 97 CPHPCRCADG---IVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRI 153
CP C C + C ++GL VP+ +P A+ + L N I+ +P +F + L +
Sbjct: 2 CPGACVCYNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTIL 61
Query: 154 D-LSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDC 212
S A +N L + F L RL TL +
Sbjct: 62 WLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG 121
Query: 213 HLSWLHRW 220
+
Sbjct: 122 PGLFRGLA 129
Score = 39.8 bits (91), Expect = 4e-04
Identities = 17/88 (19%), Positives = 28/88 (31%), Gaps = 33/88 (37%)
Query: 295 CPHPCRCADG---IVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKR 351
CP C C + C ++GL VP+ +P A+ +
Sbjct: 2 CPGACVCYNEPKVTTSCPQQGLQAVPVGIPAASQRI------------------------ 37
Query: 352 WTNRSRRLEQNDITELPPKAFANYKRLR 379
L N I+ +P +F + L
Sbjct: 38 ------FLHGNRISHVPAASFRACRNLT 59
Score = 28.6 bits (62), Expect = 1.3
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 362 NDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
+ +P A +RI L N I+ +P +F + L +
Sbjct: 21 QGLQAVPVGIPAA---SQRIFLHGNRISHVPAASFRACRNLTIL 61
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of
glycoprotein Ib alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 266
Score = 79.4 bits (194), Expect = 2e-17
Identities = 47/277 (16%), Positives = 80/277 (28%), Gaps = 49/277 (17%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSH 64
L+ N L RL L + L P LG
Sbjct: 38 LSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTL-------PVLGTLDLSHNQLQ 90
Query: 65 IKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPE 124
P + R L +
Sbjct: 91 --------------------------SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG 124
Query: 125 ATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNL 184
EL L+ N++ LPP +L ++ L+ N ++++ GL++L +L L N+L
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
Query: 185 TYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNI 244
+P G F L + N ++C+C + + RWL+ K N+
Sbjct: 185 YTIPKGFF-GSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAENVYVWKQGVDVKAMTSNV 243
Query: 245 LDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCP 281
+ +C S ++ +P CP
Sbjct: 244 ASV-----QCDNS----------DKFPVYKYPGKGCP 265
Score = 50.5 bits (119), Expect = 9e-08
Identities = 17/65 (26%), Positives = 30/65 (46%)
Query: 95 PSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRID 154
P C + V+C ++ L +P LP+ TT L L +N + Y RL +++
Sbjct: 2 PICEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLN 61
Query: 155 LSKNQ 159
L + +
Sbjct: 62 LDRAE 66
Score = 41.2 bits (95), Expect = 1e-04
Identities = 28/241 (11%), Positives = 51/241 (21%), Gaps = 43/241 (17%)
Query: 146 NYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISE 205
++ K ++ + D K T L L+ N L RL L +
Sbjct: 8 KVASHLEVNCDKRNLTALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64
Query: 206 NSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKI 265
L L T + + ++ +L S + +
Sbjct: 65 AELTKLQVDGTLPV---------LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 266 YREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATT 325
P P N + L
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE------KLSLANNNLTELPAGLLN 169
Query: 326 ELTYMVSIDRVDKVLLYSYISNNFKRWTNRSRRLEQNDITELPPKAFANYKRLRRIRLEQ 385
L + ++ L++N + +P F + L L
Sbjct: 170 GLENLDTLL------------------------LQENSLYTIPKGFFGS-HLLPFAFLHG 204
Query: 386 N 386
N
Sbjct: 205 N 205
Score = 32.4 bits (72), Expect = 0.088
Identities = 17/91 (18%), Positives = 27/91 (29%), Gaps = 30/91 (32%)
Query: 293 PSCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRW 352
P C + V+C ++ L +P LP+ TT L
Sbjct: 2 PICEVSKVASHLEVNCDKRNLTALPPDLPKDTTIL------------------------- 36
Query: 353 TNRSRRLEQNDITELPPKAFANYKRLRRIRL 383
L +N + Y RL ++ L
Sbjct: 37 -----HLSENLLYTFSLATLMPYTRLTQLNL 62
Score = 31.6 bits (70), Expect = 0.14
Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Query: 362 NDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
++T LPP + + L +N + Y RL ++
Sbjct: 20 RNLTALPPDLPKD---TTILHLSENLLYTFSLATLMPYTRLTQL 60
Score = 29.7 bits (65), Expect = 0.51
Identities = 29/230 (12%), Positives = 53/230 (23%), Gaps = 42/230 (18%)
Query: 171 LKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLY 230
+ S + + NLT LP + + L +SEN ++ L Y RL
Sbjct: 9 VASHLEVNCDKRNLTALPPDLPKDT---TILHLSENLLY-----TFSLATLMPYTRL--- 57
Query: 231 TKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECA 290
L++ E + P
Sbjct: 58 ------------TQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVL 105
Query: 291 AEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFK 350
+ + + L
Sbjct: 106 DVSFNRLTSLPLGALRGL-------------------GELQELYLKGNELKTLPPGLLTP 146
Query: 351 RWTNRSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYK 400
L N++TELP + L + L++N + +P F ++
Sbjct: 147 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL 196
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor
receptor, N-terminal domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 156
Score = 66.0 bits (159), Expect = 1e-13
Identities = 37/155 (23%), Positives = 52/155 (33%), Gaps = 7/155 (4%)
Query: 97 CPHPCRC-ADGIVDCREKGLNKVPILLPEATTELRLE---QNDITELPPKAFANYKRLRR 152
CP C + C G LP A L Q + L + LR
Sbjct: 1 CPDACCPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRN 60
Query: 153 IDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDC 212
+ + K+ + VA DAF L+ L L+ N L L + L+ L +S N C C
Sbjct: 61 LTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTV-QGLSLQELVLSGNPLHCSC 119
Query: 213 HLSWLHRWLKRYPRLGLY--TKCFAPSHIKGQNIL 245
L WL RW + +C +
Sbjct: 120 ALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMPNA 154
Score = 35.1 bits (79), Expect = 0.006
Identities = 15/67 (22%), Positives = 21/67 (31%), Gaps = 3/67 (4%)
Query: 7 NNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLY--TKCFAPSH 64
N L L + L+ L +S N C C L WL RW + +C
Sbjct: 89 FNALESLSWKTV-QGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGP 147
Query: 65 IKGQNIL 71
+
Sbjct: 148 LAHMPNA 154
Score = 31.7 bits (70), Expect = 0.068
Identities = 14/90 (15%), Positives = 19/90 (21%), Gaps = 28/90 (31%)
Query: 295 CPHPCRC-ADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWT 353
CP C + C G LP A YI N
Sbjct: 1 CPDACCPHGSSGLRCTRDGALDSLHHLPGAENLTEL--------------YIENQ----- 41
Query: 354 NRSRRLEQNDITELPPKAFANYKRLRRIRL 383
+ L + LR + +
Sbjct: 42 --------QHLQHLELRDLRGLGELRNLTI 63
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes
[TaxId: 1639]}
Length = 384
Score = 59.6 bits (143), Expect = 2e-10
Identities = 31/201 (15%), Positives = 68/201 (33%), Gaps = 22/201 (10%)
Query: 6 NNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHI 65
NN ++ + L L ++ N L+ L + S +
Sbjct: 205 TNNQISDITPLGILT--NLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGL 262
Query: 66 KGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEA 125
L + ++ P+ T E + +
Sbjct: 263 TKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKN-------------- 308
Query: 126 TTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLT 185
T L L N+I+++ P ++ +L+R+ + N++S V + L ++ L+ +N ++
Sbjct: 309 LTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDV--SSLANLTNINWLSAGHNQIS 364
Query: 186 YLPDGVFAELFRLRTLRISEN 206
L A L R+ L +++
Sbjct: 365 DLTP--LANLTRITQLGLNDQ 383
Score = 50.4 bits (119), Expect = 2e-07
Identities = 37/270 (13%), Positives = 83/270 (30%), Gaps = 25/270 (9%)
Query: 131 LEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDG 190
L + ++T+ + + ++ + + I + D + L +LT + +NN LT +
Sbjct: 29 LGKTNVTDTVSQT--DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP- 83
Query: 191 VFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEH 250
L +L + ++ N L+ L T ++ N L++ +
Sbjct: 84 -LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSN 142
Query: 251 EFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCRE 310
I T + A + ++ + D
Sbjct: 143 TISD----------ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV 192
Query: 311 KGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWTNRSR-------RLEQND 363
L +++ + + + + S N K + L N
Sbjct: 193 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ 252
Query: 364 ITELPPKAFANYKRLRRIRLEQNDITELPP 393
I+ L P + +L ++L N I+ + P
Sbjct: 253 ISNLAP--LSGLTKLTELKLGANQISNISP 280
Score = 37.3 bits (85), Expect = 0.003
Identities = 36/316 (11%), Positives = 88/316 (27%), Gaps = 47/316 (14%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
T L+ ++ I + L +I+ S NQ++ + + L L + +NNN +
Sbjct: 47 TTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDI--TPLKNLTKLVDILMNNNQIAD 102
Query: 187 LPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILD 246
+ TL ++ + I L+ + Q
Sbjct: 103 ITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFG 162
Query: 247 IPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADG-- 304
+ K + +D + + S P
Sbjct: 163 NQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLD 222
Query: 305 ---IVDCREKGLNKVPIL---------------------------LPEATTELTYMVSID 334
+ + K + + L L +++ + +
Sbjct: 223 ELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLA 282
Query: 335 RVDKVLLYSYISNNFKRWTNRSR-------RLEQNDITELPPKAFANYKRLRRIRLEQND 387
+ + N + + S L N+I+++ P ++ +L+R+ N
Sbjct: 283 GLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNK 340
Query: 388 ITELPPKAFANYKRLR 403
++++ + AN +
Sbjct: 341 VSDVS--SLANLTNIN 354
Score = 31.1 bits (69), Expect = 0.23
Identities = 10/47 (21%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
N ++++ + AN + + N I++L P AN R+ ++
Sbjct: 336 FANNKVSDVS--SLANLTNINWLSAGHNQISDLTP--LANLTRITQL 378
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 51.4 bits (121), Expect = 5e-08
Identities = 27/200 (13%), Positives = 52/200 (26%), Gaps = 2/200 (1%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSH 64
L + G F+ L + IS+N + K + +
Sbjct: 36 FVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN 95
Query: 65 IKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPE 124
+ L ++ + + + + L
Sbjct: 96 PEAFQNLPNLQYLLISNTGI--KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSF 153
Query: 125 ATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNL 184
+ L L +N I E+ AF + N + ++ D F G L ++ +
Sbjct: 154 ESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI 213
Query: 185 TYLPDGVFAELFRLRTLRIS 204
LP L +LR
Sbjct: 214 HSLPSYGLENLKKLRARSTY 233
Score = 49.5 bits (116), Expect = 2e-07
Identities = 38/298 (12%), Positives = 71/298 (23%), Gaps = 59/298 (19%)
Query: 97 CPHP-CRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDL 155
C H C C++ + C+E + ++P LP EL
Sbjct: 1 CHHRICHCSNRVFLCQESKVTEIPSDLPRNAIEL------------------------RF 36
Query: 156 SKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLS 215
++ + AF G L ++ E L I +
Sbjct: 37 VLTKLRVIQKGAFSGFGDLEK-----IEISQNDVLEVIEADVFSNLPKLHEIRIEKANNL 91
Query: 216 WLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFH 275
L + + IK + K + + E S
Sbjct: 92 LYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGL 151
Query: 276 PYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDR 335
+ S + +C D + L ++P + + +
Sbjct: 152 SFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVIL----- 206
Query: 336 VDKVLLYSYISNNFKRWTNRSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPP 393
+ + I LP N K+LR ++ +LP
Sbjct: 207 ----------------------DISRTRIHSLPSYGLENLKKLRARST--YNLKKLPT 240
Score = 30.3 bits (66), Expect = 0.35
Identities = 10/53 (18%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 353 TNRSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
+NR +++ +TE+P N +R + + AF+ + L ++
Sbjct: 9 SNRVFLCQESKVTEIPSDLPRN---AIELRFVLTKLRVIQKGAFSGFGDLEKI 58
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes
[TaxId: 1639]}
Length = 227
Score = 48.5 bits (114), Expect = 4e-07
Identities = 30/186 (16%), Positives = 57/186 (30%), Gaps = 14/186 (7%)
Query: 4 TLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPS 63
+ +T + L L L + +N L L + + A +
Sbjct: 47 SAFGTGVTTIEG--VQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIA 104
Query: 64 HIKGQNILDIPEHEFKCSGPVEKPTGECA--------AEPSCPHPCRCADGIVDCREKGL 115
++ LD+ + P+ + S + +
Sbjct: 105 GLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVS 164
Query: 116 NKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLT 175
+ P+ T L+ + N I+++ P A+ L + L NQIS V +L
Sbjct: 165 DLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDV--SPLANTSNLF 220
Query: 176 SLTLNN 181
+TL N
Sbjct: 221 IVTLTN 226
Score = 47.3 bits (111), Expect = 1e-06
Identities = 30/268 (11%), Positives = 64/268 (23%), Gaps = 56/268 (20%)
Query: 136 ITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAEL 195
I + P +I K+ ++ L +T+L+ +T + L
Sbjct: 9 INVIFPDP--ALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIEG--VQYL 62
Query: 196 FRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS 255
L L + +N L L +
Sbjct: 63 NNLIGLELKDNQITDLAPLKNLTKI----------------------------------- 87
Query: 256 GSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNK 315
E + N + + + + L
Sbjct: 88 -----------TELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYL 136
Query: 316 VPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWTNRSRRLEQNDITELPPKAFANY 375
+ + S ++ + + + N I+++ P A+
Sbjct: 137 DLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASL 194
Query: 376 KRLRRIRLEQNDITELPPKAFANYKRLR 403
L + L+ N I+++ P AN L
Sbjct: 195 PNLIEVHLKNNQISDVSP--LANTSNLF 220
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 344
Score = 49.1 bits (115), Expect = 5e-07
Identities = 25/284 (8%), Positives = 60/284 (21%), Gaps = 15/284 (5%)
Query: 129 LRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAV----DAFQGLKSLTSLTLNNNNL 184
+ D + ++ I LS N I A + K L ++
Sbjct: 13 DAITTEDEKSVF-AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFT 71
Query: 185 TYLPDGVFAELFRLRTLRISENSF--ICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQ 242
+ D + L L + + ++ + ++
Sbjct: 72 GRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN 131
Query: 243 NILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCA 302
+ + + + K + E A
Sbjct: 132 GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTV 191
Query: 303 DG--IVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWTNRSRRLE 360
E + + L + + + + R L
Sbjct: 192 KMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN 251
Query: 361 QNDITELPPKAFANY------KRLRRIRLEQNDITELPPKAFAN 398
++ A + L+ +RL+ N+I +
Sbjct: 252 DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT 295
Score = 37.2 bits (84), Expect = 0.003
Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 13/82 (15%)
Query: 131 LEQNDITELPPKAFANY------KRLRRIDLSKNQISKVAVDA-----FQGLKSLTSLTL 179
L ++ A + L+ + L N+I AV + + L L L
Sbjct: 250 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 309
Query: 180 NNNNLTYLPDGV--FAELFRLR 199
N N + D V E+F R
Sbjct: 310 NGNRFSEEDDVVDEIREVFSTR 331
Score = 31.4 bits (69), Expect = 0.19
Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 7/68 (10%)
Query: 127 TELRLEQNDITE-----LPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNN 181
LRL+ N+I L L ++L+ N+ S+ D ++ + S
Sbjct: 276 QTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED-DVVDEIREVFST-RGR 333
Query: 182 NNLTYLPD 189
L L D
Sbjct: 334 GELDELDD 341
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 44.5 bits (104), Expect = 3e-06
Identities = 19/98 (19%), Positives = 34/98 (34%), Gaps = 5/98 (5%)
Query: 130 RLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPD 189
+L I + + N R R +DL +I + + L ++ ++N + L
Sbjct: 2 KLTAELIEQAA--QYTNAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKLDG 58
Query: 190 GVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRL 227
F L RL+TL ++ N L
Sbjct: 59 --FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 94
Score = 28.4 bits (62), Expect = 0.92
Identities = 8/46 (17%), Positives = 14/46 (30%), Gaps = 3/46 (6%)
Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLR 403
+L I + + N R R + L I + A +
Sbjct: 2 KLTAELIEQAA--QYTNAVRDRELDLRGYKIPVIEN-LGATLDQFD 44
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 210
Score = 45.0 bits (105), Expect = 4e-06
Identities = 30/177 (16%), Positives = 55/177 (31%), Gaps = 20/177 (11%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSH 64
NN+++ + L + L ++ N L+ L + +
Sbjct: 53 ANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKD 110
Query: 65 IKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPE 124
+K L + + + + +
Sbjct: 111 LKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTK------------- 157
Query: 125 ATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNN 181
L LE N I+++ P A +L+ + LSKN IS + A GLK+L L L +
Sbjct: 158 -LDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFS 209
Score = 37.7 bits (86), Expect = 0.001
Identities = 14/99 (14%), Positives = 30/99 (30%), Gaps = 9/99 (9%)
Query: 122 LPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNN 181
L T + I + + +L K ++ L S+ + NN
Sbjct: 3 LGSETITVPTPIKQIFSDD-----AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANN 55
Query: 182 NNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRW 220
+++ + L + L ++ N L+ L
Sbjct: 56 SDIKSVQG--IQYLPNVTKLFLNGNKLTDIKPLANLKNL 92
Score = 35.0 bits (79), Expect = 0.010
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 165 VDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRIS 204
+ GL L +L L+ N+++ L A L L L +
Sbjct: 171 IVPLAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELF 208
Score = 27.3 bits (59), Expect = 2.8
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 352 WTNRSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
+ LE N I+++ P A +L+ + L +N I++L A K L
Sbjct: 156 TKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDV 204
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 460
Score = 45.7 bits (106), Expect = 5e-06
Identities = 13/164 (7%), Positives = 41/164 (25%), Gaps = 10/164 (6%)
Query: 127 TELRLEQNDITELP-PKAFANYKRLRRIDLSKNQISKVAV----DAFQGLKSLTSLTLNN 181
L ++ ++++ + ++ + + L +++ A + +L L L +
Sbjct: 5 QSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRS 64
Query: 182 NNLT-----YLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAP 236
N L + G+ +++ L + L+
Sbjct: 65 NELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL 124
Query: 237 SHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSC 280
Q + + + C +
Sbjct: 125 GDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAK 168
Score = 43.8 bits (101), Expect = 2e-05
Identities = 26/180 (14%), Positives = 46/180 (25%), Gaps = 10/180 (5%)
Query: 34 FICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGPVEKPTGECAA 93
L L G C Q + + + A
Sbjct: 279 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQ 338
Query: 94 EPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFA----NYKR 149
+ + D + L + L L D+++ + A
Sbjct: 339 NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS 398
Query: 150 LRRIDLSKNQISKVAVDAF-----QGLKSLTSLTLNNNNLTY-LPDGVFAELFRLRTLRI 203
LR +DLS N + + Q L L L + + + D + A +LR+
Sbjct: 399 LRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRV 458
Score = 40.7 bits (93), Expect = 2e-04
Identities = 12/78 (15%), Positives = 30/78 (38%), Gaps = 6/78 (7%)
Query: 150 LRRIDLSKNQISKVAV-DAFQGLKSLTSLTLNNNNLTYLPDGVFAELFR----LRTLRIS 204
++ +D+ ++S + L+ + L++ LT + R L L +
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 205 ENSFICDCHLSWLHRWLK 222
N + D + + + L+
Sbjct: 64 SNE-LGDVGVHCVLQGLQ 80
Score = 35.3 bits (79), Expect = 0.012
Identities = 22/187 (11%), Positives = 45/187 (24%), Gaps = 4/187 (2%)
Query: 127 TELRLEQNDITELPPKAFA----NYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNN 182
+RL+ +TE K + L ++L N++ V V S +
Sbjct: 30 QVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKL 89
Query: 183 NLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQ 242
+L TLR + L + GL ++ +
Sbjct: 90 SLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLE 149
Query: 243 NILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCA 302
+ + D + + + + + C
Sbjct: 150 YCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCG 209
Query: 303 DGIVDCR 309
+CR
Sbjct: 210 VTSDNCR 216
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia
pestis [TaxId: 632]}
Length = 353
Score = 44.8 bits (104), Expect = 9e-06
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 12/78 (15%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
EL + N + ELP A RL R+ S N +++V + ++L L + N L
Sbjct: 287 EELNVSNNKLIELP----ALPPRLERLIASFNHLAEVP----ELPQNLKQLHVEYNPLRE 338
Query: 187 LPDGVFAELFRLRTLRIS 204
PD + LR++
Sbjct: 339 FPD----IPESVEDLRMN 352
Score = 41.3 bits (95), Expect = 1e-04
Identities = 44/311 (14%), Positives = 86/311 (27%), Gaps = 38/311 (12%)
Query: 109 DCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAF 168
+ RE ++++ L EL L ++ LP L + S N ++++
Sbjct: 23 EQREMAVSRLRDCLDRQAHELELNNLGLSSLPE----LPPHLESLVASCNSLTELP---- 74
Query: 169 QGLKSLTSLTLNNNNLTYLP------------DGVFAELFRLRTLRISENSFICDCHLSW 216
+ +SL SL ++NNNL L + +L L+ + + + L
Sbjct: 75 ELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK 134
Query: 217 LHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHP 276
L + + S + + +
Sbjct: 135 LPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNIL 194
Query: 277 YNSCPVEKPT---------GECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTEL 327
++ P P + + L +E
Sbjct: 195 EELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSEN 254
Query: 328 TYMVSIDRVDKVLLYSYISNNFKRWTNRSRRLE-----QNDITELPPKAFANYKRLRRIR 382
+ + + + SN + + LE N + ELP A RL R+
Sbjct: 255 IFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELP----ALPPRLERLI 310
Query: 383 LEQNDITELPP 393
N + E+P
Sbjct: 311 ASFNHLAEVPE 321
Score = 41.0 bits (94), Expect = 2e-04
Identities = 17/175 (9%), Positives = 38/175 (21%), Gaps = 8/175 (4%)
Query: 34 FICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGPVEKPTGECAA 93
G P + I + P A
Sbjct: 170 DNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEAL 229
Query: 94 EPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRI 153
+ + +++ N + L +
Sbjct: 230 NVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEEL 289
Query: 154 DLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSF 208
++S N++ ++ L L + N+L +P+ L+ L + N
Sbjct: 290 NVSNNKLIELP----ALPPRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPL 336
Score = 25.9 bits (55), Expect = 9.7
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 4/30 (13%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSF 34
LNN L+ LP+ L +L S NS
Sbjct: 45 LNNLGLSSLPE----LPPHLESLVASCNSL 70
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase
alpha-subunit, C-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 40.9 bits (95), Expect = 3e-05
Identities = 22/109 (20%), Positives = 32/109 (29%), Gaps = 26/109 (23%)
Query: 129 LRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSL-------------- 174
L L D+T L + +DLS N++ + A L+ L
Sbjct: 3 LHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDNALENVD 59
Query: 175 --------TSLTLNNNNLTYLPD-GVFAELFRLRTLRISENSFICDCHL 214
L L NN L RL L + NS + +
Sbjct: 60 GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 108
Score = 37.0 bits (85), Expect = 7e-04
Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 6/70 (8%)
Query: 151 RRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFIC 210
R + L+ ++ + + L +T L L++N L + L LR L + + S
Sbjct: 1 RVLHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLR----ALPPALAALRCLEVLQASDNA 54
Query: 211 DCHLSWLHRW 220
++ +
Sbjct: 55 LENVDGVANL 64
Score = 32.8 bits (74), Expect = 0.020
Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 127 TELRLEQNDITELP-PKAFANYKRLRRIDLSKNQISKVA---VDAFQGLKSLTSL 177
EL L N + + + + RL ++L N + + + L S++S+
Sbjct: 68 QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122
Score = 29.3 bits (65), Expect = 0.37
Identities = 6/52 (11%), Positives = 16/52 (30%), Gaps = 1/52 (1%)
Query: 342 YSYISNNFKRWTNRSRRLEQNDITELP-PKAFANYKRLRRIRLEQNDITELP 392
+ + L N + + + + RL + L+ N + +
Sbjct: 55 LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 106
Score = 26.2 bits (57), Expect = 4.5
Identities = 9/37 (24%), Positives = 12/37 (32%), Gaps = 1/37 (2%)
Query: 5 LNNNNLTYLPD-GVFAELFRLRTLRISENSFICDCHL 40
L NN L RL L + NS + +
Sbjct: 72 LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 108
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 42.4 bits (98), Expect = 5e-05
Identities = 26/182 (14%), Positives = 52/182 (28%), Gaps = 2/182 (1%)
Query: 121 LLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAF-QGLKSLTSLTL 179
LL + R ++ + + + F+ + R++ +DLS + I + L +L+L
Sbjct: 20 LLSQGVIAFRCPRSFMDQPLAEHFSPF-RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 78
Query: 180 NNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHI 239
L+ A+ L L +S S + L L R L L
Sbjct: 79 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKH 138
Query: 240 KGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPC 299
+ + E + + S + P + +
Sbjct: 139 VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ 198
Query: 300 RC 301
Sbjct: 199 LN 200
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 199
Score = 39.6 bits (91), Expect = 3e-04
Identities = 29/173 (16%), Positives = 53/173 (30%), Gaps = 20/173 (11%)
Query: 5 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSH 64
+ + + L L + S N L L + + ++
Sbjct: 47 ADRLGIKSIDG--VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLAN 104
Query: 65 IKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPE 124
+ L + ++ P++ T E S + + LN
Sbjct: 105 LTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNF------- 157
Query: 125 ATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSL 177
N +T+L P AN L R+D+S N++S + L +L SL
Sbjct: 158 -------SSNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESL 199
Score = 38.5 bits (88), Expect = 6e-04
Identities = 14/136 (10%), Positives = 35/136 (25%), Gaps = 4/136 (2%)
Query: 145 ANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRIS 204
+ L K ++ + L +T+L + + + L L + S
Sbjct: 15 TALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFS 70
Query: 205 ENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSK 264
N L L + + +++ L + ++ +
Sbjct: 71 NNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNL 130
Query: 265 IYREECSTDFHPYNSC 280
E S ++
Sbjct: 131 NRLELSSNTISDISAL 146
Score = 31.9 bits (71), Expect = 0.085
Identities = 9/37 (24%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 165 VDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTL 201
+ L +L L +++N ++ + V A+L L +L
Sbjct: 165 LKPLANLTTLERLDISSNKVSDIS--VLAKLTNLESL 199
Score = 26.9 bits (58), Expect = 3.8
Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 4/60 (6%)
Query: 344 YISNNFKRWTNRSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLR 403
IS + + N +T+L P AN L R+ + N ++++ A L
Sbjct: 142 DISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDISV--LAKLTNLE 197
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP
{Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Length = 313
Score = 40.1 bits (92), Expect = 3e-04
Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 3/71 (4%)
Query: 146 NYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY-LPDGVFAELFRLRTLRIS 204
K L +DL N+I LK L SL ++ NNL +P L R +
Sbjct: 242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYA 299
Query: 205 ENSFICDCHLS 215
N +C L
Sbjct: 300 NNKCLCGSPLP 310
Score = 37.0 bits (84), Expect = 0.003
Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 1/54 (1%)
Query: 131 LEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNL 184
L N I P+ K L +++S N + + L+ NN
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE-IPQGGNLQRFDVSAYANNKC 303
Score = 30.9 bits (68), Expect = 0.23
Identities = 29/256 (11%), Positives = 55/256 (21%), Gaps = 17/256 (6%)
Query: 163 VAVDAFQGLKSLTSLTLNNNNLT---YLPDGVFAELFRLRTLRISENSFICDCHLSWLHR 219
V D + +L L+ NL +P A L L L I + + + +
Sbjct: 41 VLCDTDTQTYRVNNLDLSGLNLPKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAIAK 99
Query: 220 WLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNS 279
+ + +T I + +F + S I +
Sbjct: 100 LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159
Query: 280 CPVEKPTGECAAEPS------------CPHPCRCADGIVDCREKGLNKVPILLPEATTEL 327
+ + +
Sbjct: 160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGS 219
Query: 328 TYMVSIDRVDKVLLYSYISNNFKRWTNRSRRLEQNDITELPPKAFANYKRLRRIRLEQND 387
+ K L + L N I P+ K L + + N+
Sbjct: 220 DKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279
Query: 388 ITELPPKAFANYKRLR 403
+ P N +R
Sbjct: 280 LCGEIP-QGGNLQRFD 294
>d1kw4a_ a.60.1.2 (A:) Polyhomeotic {Drosophila melanogaster [TaxId:
7227]}
Length = 70
Score = 30.6 bits (69), Expect = 0.048
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Query: 219 RWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS-GSSMETRSKIYRE 268
+++ P Y F I GQ +L + E + G + KI +
Sbjct: 15 NFIRELPGCQDYVDDFIQQEIDGQALLRLKEKHLVNAMGMKLGPALKIVAK 65
Score = 26.7 bits (59), Expect = 1.3
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 45 RWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFK 79
+++ P Y F I GQ +L + E
Sbjct: 15 NFIRELPGCQDYVDDFIQQEIDGQALLRLKEKHLV 49
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 32.5 bits (73), Expect = 0.049
Identities = 14/84 (16%), Positives = 26/84 (30%), Gaps = 9/84 (10%)
Query: 127 TELRLEQNDIT--ELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNL 184
L L N + + L+ ++LS N++ L L L+ N+L
Sbjct: 68 LSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSL 127
Query: 185 TYLPDG-------VFAELFRLRTL 201
+ + +L L
Sbjct: 128 SDTFRDQSTYISAIRERFPKLLRL 151
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae
(Chlamydomonas reinhardtii) [TaxId: 3055]}
Length = 198
Score = 31.2 bits (69), Expect = 0.14
Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 128 ELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSL 177
EL I ++ + K + + LS N I K + + G+++L L
Sbjct: 29 ELHGMIPPIEKMD-ATLSTLKACKHLALSTNNIEK--ISSLSGMENLRIL 75
>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 266
Score = 27.2 bits (59), Expect = 3.8
Identities = 11/67 (16%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
Query: 144 FANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLN-NNNLTYLPDGVFAELFRLRTLR 202
F N +R++ L +++ + + L+++ +L +N Y D + + R
Sbjct: 6 FTNRHEVRKMTLDRSEYTSL----IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDR 61
Query: 203 ISENSFI 209
S
Sbjct: 62 AHGVSSY 68
>d1iufa2 a.4.1.7 (A:76-141) Ars-binding protein 1, ABP1 {Fission
yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 66
Score = 25.1 bits (55), Expect = 3.9
Identities = 4/26 (15%), Positives = 11/26 (42%)
Query: 25 RTLRISENSFICDCHLSWLHRWLKRY 50
+ ++ + + WL + KR+
Sbjct: 38 HKIPEYQDQPVPNFSNGWLEGFRKRH 63
Score = 25.1 bits (55), Expect = 3.9
Identities = 4/26 (15%), Positives = 11/26 (42%)
Query: 199 RTLRISENSFICDCHLSWLHRWLKRY 224
+ ++ + + WL + KR+
Sbjct: 38 HKIPEYQDQPVPNFSNGWLEGFRKRH 63
>d1r7aa2 c.1.8.1 (A:1-434) Sucrose phosphorylase {Bifidobacterium
adolescentis [TaxId: 1680]}
Length = 434
Score = 26.6 bits (57), Expect = 5.4
Identities = 8/43 (18%), Positives = 10/43 (23%)
Query: 344 YISNNFKRWTNRSRRLEQNDITELPPKAFANYKRLRRIRLEQN 386
N R NR L L + R E +
Sbjct: 392 LRKTNNGRDINRHYYSTAEIDENLKRPVVKALNALAKFRNELD 434
>d1a77a2 c.120.1.2 (A:2-208) Flap endonuclease-1 (Fen-1 nuclease)
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 207
Score = 25.8 bits (56), Expect = 7.7
Identities = 27/166 (16%), Positives = 44/166 (26%), Gaps = 24/166 (14%)
Query: 135 DITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGL-KSLTSLTLNNNNLTYLPDGVFA 193
+ PK I + KVA+D L + LTS+ L + + G
Sbjct: 3 QFGDFIPK--------NIISFEDLKGKKVAIDGMNALYQFLTSIRLRDGSPLRNRKGEIT 54
Query: 194 ELFR---LRTLRISENS----FICDCHLSWL--HRWLKRYPRLGLYTKCFAPSHIKGQNI 244
+ +T+ + EN ++ D L R + K
Sbjct: 55 SAYNGVFYKTIHLLENDITPIWVFDGEPPKLKEKTRKVRREMKEKAELKMKEAIKKEDFE 114
Query: 245 LDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECA 290
E + + E C VE P+ A
Sbjct: 115 ------EAAKYAKRVSYLTPKMVENCKYLLSLMGIPYVEAPSEGEA 154
>d1hlva2 a.4.1.7 (A:67-131) DNA-binding domain of centromere
binding protein B (CENP-B) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 24.3 bits (53), Expect = 8.1
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 20 ELFRLRTLRISENSFICDCHLS--WLHRWLKRY 50
+ + + LRI+E + D S WL R+ +R
Sbjct: 32 IILKEKALRIAEELGMDDFTASNGWLDRFRRRR 64
Score = 24.3 bits (53), Expect = 8.1
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 194 ELFRLRTLRISENSFICDCHLS--WLHRWLKRY 224
+ + + LRI+E + D S WL R+ +R
Sbjct: 32 IILKEKALRIAEELGMDDFTASNGWLDRFRRRR 64
>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}
Length = 263
Score = 26.0 bits (56), Expect = 8.4
Identities = 24/179 (13%), Positives = 42/179 (23%), Gaps = 32/179 (17%)
Query: 144 FANYKRLRRIDLSKNQISK--------------VAVD----------AFQGLKSLTSLTL 179
FA ++ R+ L +N + K + + S+ +L
Sbjct: 6 FAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASL 65
Query: 180 NNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRW--LKRYPRLGLYTKCFAPS 237
+ T + + + F D L + R+ T P
Sbjct: 66 HGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPR 125
Query: 238 HIKGQNILDIPEHEFKCSGSSMETRSKIYREECS-TDFHPYNSCPVEKPTGECAAEPSC 295
I + D P KI T+ + P G S
Sbjct: 126 GI----VTD-PVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSS 179
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.138 0.441
Gapped
Lambda K H
0.267 0.0428 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,610,130
Number of extensions: 80134
Number of successful extensions: 381
Number of sequences better than 10.0: 1
Number of HSP's gapped: 281
Number of HSP's successfully gapped: 95
Length of query: 405
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 318
Effective length of database: 1,213,086
Effective search space: 385761348
Effective search space used: 385761348
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.3 bits)