BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12215
(155 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|242005244|ref|XP_002423481.1| LIM-only protein, putative [Pediculus humanus corporis]
gi|212506569|gb|EEB10743.1| LIM-only protein, putative [Pediculus humanus corporis]
Length = 284
Score = 245 bits (625), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 120/152 (78%), Positives = 124/152 (81%), Gaps = 25/152 (16%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+DLFWHEDCLKCGCCDCRLGEVGSTLY KANLILCKRDYLRLFGTTGYCAAC KVIPAF
Sbjct: 64 AIDLFWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGTTGYCAACNKVIPAF 123
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFCVGDRFYLCD 120
EMVMRAK+NVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY
Sbjct: 124 EMVMRAKSNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY---------------- 167
Query: 121 NKILCEYDYEERQVFANIAYNPSSLAHLRRQV 152
EER VFAN+AYNPSSLAH+RRQV
Sbjct: 168 ---------EERLVFANMAYNPSSLAHIRRQV 190
>gi|157116702|ref|XP_001652842.1| rhombotin [Aedes aegypti]
gi|108876328|gb|EAT40553.1| AAEL007719-PA [Aedes aegypti]
Length = 218
Score = 243 bits (619), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 120/153 (78%), Positives = 124/153 (81%), Gaps = 25/153 (16%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALDLFWHEDCLKCGCCDCRLGEVGSTLY KANLILCKRDYLRLFGTTGYCAAC KVIPAF
Sbjct: 82 ALDLFWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGTTGYCAACNKVIPAF 141
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFCVGDRFYLCD 120
EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY
Sbjct: 142 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY---------------- 185
Query: 121 NKILCEYDYEERQVFANIAYNPSSLAHLRRQVT 153
EER VFA++A NPSSLAH+RRQV+
Sbjct: 186 ---------EERLVFASMACNPSSLAHIRRQVS 209
>gi|270005132|gb|EFA01580.1| hypothetical protein TcasGA2_TC007141 [Tribolium castaneum]
Length = 254
Score = 242 bits (618), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 118/151 (78%), Positives = 122/151 (80%), Gaps = 25/151 (16%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALDL+WHEDCLKCGCCDCRLGEVGSTLY KANLILCKRDYLRLFGTTGYCAAC KVIPAF
Sbjct: 63 ALDLYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGTTGYCAACNKVIPAF 122
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFCVGDRFYLCD 120
EMVMRAK+NVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY
Sbjct: 123 EMVMRAKSNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY---------------- 166
Query: 121 NKILCEYDYEERQVFANIAYNPSSLAHLRRQ 151
EER VFAN+ YNPSSLAH+RRQ
Sbjct: 167 ---------EERLVFANMTYNPSSLAHIRRQ 188
>gi|189236731|ref|XP_974987.2| PREDICTED: similar to AGAP010391-PA [Tribolium castaneum]
Length = 231
Score = 242 bits (618), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 119/153 (77%), Positives = 124/153 (81%), Gaps = 25/153 (16%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALDL+WHEDCLKCGCCDCRLGEVGSTLY KANLILCKRDYLRLFGTTGYCAAC KVIPAF
Sbjct: 35 ALDLYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGTTGYCAACNKVIPAF 94
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFCVGDRFYLCD 120
EMVMRAK+NVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY
Sbjct: 95 EMVMRAKSNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY---------------- 138
Query: 121 NKILCEYDYEERQVFANIAYNPSSLAHLRRQVT 153
EER VFAN+ YNPSSLAH+RRQV+
Sbjct: 139 ---------EERLVFANMTYNPSSLAHIRRQVS 162
>gi|158289946|ref|XP_311556.4| AGAP010391-PA [Anopheles gambiae str. PEST]
gi|157018403|gb|EAA07238.4| AGAP010391-PA [Anopheles gambiae str. PEST]
Length = 204
Score = 242 bits (617), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 119/153 (77%), Positives = 124/153 (81%), Gaps = 25/153 (16%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD+FWHEDCLKCGCCDCRLGEVGSTLY KANLILCKRDYLRLFGTTGYCAAC KVIPAF
Sbjct: 68 ALDIFWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGTTGYCAACNKVIPAF 127
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFCVGDRFYLCD 120
EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY
Sbjct: 128 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY---------------- 171
Query: 121 NKILCEYDYEERQVFANIAYNPSSLAHLRRQVT 153
EER VFA++A NPSSLAH+RRQV+
Sbjct: 172 ---------EERLVFASMACNPSSLAHIRRQVS 195
>gi|170031972|ref|XP_001843857.1| rhombotin [Culex quinquefasciatus]
gi|167871437|gb|EDS34820.1| rhombotin [Culex quinquefasciatus]
Length = 255
Score = 239 bits (609), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 119/151 (78%), Positives = 122/151 (80%), Gaps = 25/151 (16%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALDLFWHEDCLKCGCCDCRLGEVGSTLY KANLILCKRDYLRLFGTTGYCAAC KVIPAF
Sbjct: 97 ALDLFWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGTTGYCAACNKVIPAF 156
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFCVGDRFYLCD 120
EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY
Sbjct: 157 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY---------------- 200
Query: 121 NKILCEYDYEERQVFANIAYNPSSLAHLRRQ 151
EER VFA++A NPSSLAH+RRQ
Sbjct: 201 ---------EERLVFASMACNPSSLAHIRRQ 222
>gi|91080717|ref|XP_975367.1| PREDICTED: similar to beadex/dLMO protein [Tribolium castaneum]
gi|270005467|gb|EFA01915.1| hypothetical protein TcasGA2_TC007525 [Tribolium castaneum]
Length = 241
Score = 238 bits (606), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 113/155 (72%), Positives = 123/155 (79%), Gaps = 25/155 (16%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALDL+WHEDCLKCGCCDCRLGEVGSTLY KANLILCKRDYLRLFG TGYCAAC+KVIPAF
Sbjct: 51 ALDLYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGNTGYCAACSKVIPAF 110
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFCVGDRFYLCD 120
EMVMRA++NVYHLECFACQQCNHRFCVGDRFYLC+NKILCEYDY
Sbjct: 111 EMVMRARSNVYHLECFACQQCNHRFCVGDRFYLCENKILCEYDY---------------- 154
Query: 121 NKILCEYDYEERQVFANIAYNPSSLAHLRRQVTLQ 155
EER VFAN+AYNP L+HL+RQ ++
Sbjct: 155 ---------EERLVFANMAYNPPPLSHLKRQTSIP 180
>gi|357622819|gb|EHJ74198.1| beadex/dLMO protein [Danaus plexippus]
Length = 359
Score = 238 bits (606), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 112/153 (73%), Positives = 118/153 (77%), Gaps = 25/153 (16%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD WHEDCLKCGCCDCRLGEVG TLY +ANLILCKRDYLRLFG TGYCAAC KVIPAF
Sbjct: 182 ALDQLWHEDCLKCGCCDCRLGEVGHTLYTRANLILCKRDYLRLFGNTGYCAACNKVIPAF 241
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFCVGDRFYLCD 120
EMVMRA++NVYHLECFACQQCNHRFCVGDRFYLC+NKILCEYDY
Sbjct: 242 EMVMRARSNVYHLECFACQQCNHRFCVGDRFYLCENKILCEYDY---------------- 285
Query: 121 NKILCEYDYEERQVFANIAYNPSSLAHLRRQVT 153
EER VFAN+AYNP LAHL+RQ T
Sbjct: 286 ---------EERLVFANMAYNPPPLAHLKRQTT 309
>gi|328712778|ref|XP_001945042.2| PREDICTED: hypothetical protein LOC100161710 [Acyrthosiphon pisum]
Length = 388
Score = 237 bits (604), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 118/154 (76%), Positives = 122/154 (79%), Gaps = 26/154 (16%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALDLFWHEDCLKCGCCDCRLGEVGSTLY KANLILCKRDYLRLFG TG CAAC KVIPAF
Sbjct: 74 ALDLFWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGATGNCAACNKVIPAF 133
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFCVGDRFYLCD 120
EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC+NKILCEYDY
Sbjct: 134 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCENKILCEYDY---------------- 177
Query: 121 NKILCEYDYEERQVFANIA-YNPSSLAHLRRQVT 153
EER VFAN+A YN SSLAH+RRQV+
Sbjct: 178 ---------EERLVFANMATYNSSSLAHIRRQVS 202
>gi|114052529|ref|NP_001040254.1| beadex/dLMO protein [Bombyx mori]
gi|87248525|gb|ABD36315.1| beadex/dLMO protein [Bombyx mori]
Length = 267
Score = 233 bits (595), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 112/153 (73%), Positives = 118/153 (77%), Gaps = 25/153 (16%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD WHEDCLKCGCCDCRLGEVG TLY +ANLILCKRDYLRLFG TGYCAAC KVIPAF
Sbjct: 71 ALDQLWHEDCLKCGCCDCRLGEVGHTLYTRANLILCKRDYLRLFGNTGYCAACNKVIPAF 130
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFCVGDRFYLCD 120
EMVMRA++NVYHLECFACQQCNHRFCVGDRFYLC+NKILCEYDY
Sbjct: 131 EMVMRARSNVYHLECFACQQCNHRFCVGDRFYLCENKILCEYDY---------------- 174
Query: 121 NKILCEYDYEERQVFANIAYNPSSLAHLRRQVT 153
EER VFAN+AYNP LAHL+RQ T
Sbjct: 175 ---------EERLVFANMAYNPPPLAHLKRQTT 198
>gi|242020909|ref|XP_002430893.1| LIM-only protein, putative [Pediculus humanus corporis]
gi|212516104|gb|EEB18155.1| LIM-only protein, putative [Pediculus humanus corporis]
Length = 224
Score = 223 bits (568), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 110/153 (71%), Positives = 119/153 (77%), Gaps = 25/153 (16%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A +LFWHEDCLKCGCCDCRLGEVGSTLY KANLILCKRDYLRLFG TGYC+AC KVIPAF
Sbjct: 42 ACELFWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGNTGYCSACNKVIPAF 101
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFCVGDRFYLCD 120
EMVMRAK+NVYHLECFACQQCNHRFCVGDRFYLC+NKILCEYDY
Sbjct: 102 EMVMRAKHNVYHLECFACQQCNHRFCVGDRFYLCENKILCEYDY---------------- 145
Query: 121 NKILCEYDYEERQVFANIAYNPSSLAHLRRQVT 153
EER VFAN+AYNP S+A ++R +
Sbjct: 146 ---------EERLVFANMAYNPPSIAAIKRHLP 169
>gi|198467349|ref|XP_002134510.1| GA22333 [Drosophila pseudoobscura pseudoobscura]
gi|198149202|gb|EDY73137.1| GA22333 [Drosophila pseudoobscura pseudoobscura]
Length = 407
Score = 220 bits (561), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 99/110 (90%), Positives = 104/110 (94%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD+ WHEDCLKCGCCDCRLGEVGSTLY K NL+LCKRDYLRLFG TGYCAAC+KVIPAF
Sbjct: 201 ALDMLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYLRLFGNTGYCAACSKVIPAF 260
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVF 110
EMVMRA+ NVYHLECFACQQCNHRFCVGDRFYLC+NKILCEYDYEER VF
Sbjct: 261 EMVMRARTNVYHLECFACQQCNHRFCVGDRFYLCENKILCEYDYEERLVF 310
>gi|195039941|ref|XP_001990976.1| GH12432 [Drosophila grimshawi]
gi|193900734|gb|EDV99600.1| GH12432 [Drosophila grimshawi]
Length = 447
Score = 219 bits (559), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 99/110 (90%), Positives = 104/110 (94%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD+ WHEDCLKCGCCDCRLGEVGSTLY K NL+LCKRDYLRLFG TGYCAAC+KVIPAF
Sbjct: 234 ALDMLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYLRLFGNTGYCAACSKVIPAF 293
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVF 110
EMVMRA+ NVYHLECFACQQCNHRFCVGDRFYLC+NKILCEYDYEER VF
Sbjct: 294 EMVMRARTNVYHLECFACQQCNHRFCVGDRFYLCENKILCEYDYEERLVF 343
>gi|347964385|ref|XP_311266.4| AGAP000731-PA [Anopheles gambiae str. PEST]
gi|333467506|gb|EAA06846.4| AGAP000731-PA [Anopheles gambiae str. PEST]
Length = 420
Score = 219 bits (558), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 99/110 (90%), Positives = 104/110 (94%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALDL WHEDCLKCGCCDCRLGEVGSTLY K NL+LCKRDYLRLFG TG+CAAC KVIPAF
Sbjct: 164 ALDLLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYLRLFGNTGFCAACNKVIPAF 223
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVF 110
EMVMRA+NNVYHLECFACQQCNHRFCVGD+FYLC+NKILCEYDYEER VF
Sbjct: 224 EMVMRARNNVYHLECFACQQCNHRFCVGDKFYLCENKILCEYDYEERLVF 273
>gi|170062853|ref|XP_001866850.1| beadex [Culex quinquefasciatus]
gi|167880615|gb|EDS43998.1| beadex [Culex quinquefasciatus]
Length = 278
Score = 219 bits (557), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 99/110 (90%), Positives = 104/110 (94%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALDL WHEDCLKCGCCDCRLGEVGSTLY K NL+LCKRDYLRLFG TG+CAAC KVIPAF
Sbjct: 73 ALDLLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYLRLFGNTGFCAACNKVIPAF 132
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVF 110
EMVMRA+NNVYHLECFACQQCNHRFCVGD+FYLC+NKILCEYDYEER VF
Sbjct: 133 EMVMRARNNVYHLECFACQQCNHRFCVGDKFYLCENKILCEYDYEERLVF 182
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 65/143 (45%), Gaps = 45/143 (31%)
Query: 50 CAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFC-VGDRFYLCDNKILCEYDYEE-- 106
CA C K I ++RA + ++H +C C C+ R VG Y N +LC+ DY
Sbjct: 58 CAGCKKHI-QDRFLLRALDLLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYLRLF 116
Query: 107 -------------------------------------RQVFCVGDRFYLCDNKILCEYDY 129
FCVGD+FYLC+NKILCEYDY
Sbjct: 117 GNTGFCAACNKVIPAFEMVMRARNNVYHLECFACQQCNHRFCVGDKFYLCENKILCEYDY 176
Query: 130 EERQVFANIAYNPSSLAHLRRQV 152
EER VFA++A +P L+RQ+
Sbjct: 177 EERLVFASMANHPM----LKRQI 195
>gi|24643072|ref|NP_728184.1| beadex, isoform A [Drosophila melanogaster]
gi|28571259|ref|NP_788931.1| beadex, isoform C [Drosophila melanogaster]
gi|3445443|emb|CAA09104.1| beadex/dLMO protein [Drosophila melanogaster]
gi|7293486|gb|AAF48861.1| beadex, isoform A [Drosophila melanogaster]
gi|16768462|gb|AAL28450.1| GM05069p [Drosophila melanogaster]
gi|28381650|gb|AAO41709.1| beadex, isoform C [Drosophila melanogaster]
gi|220942446|gb|ACL83766.1| Bx-PA [synthetic construct]
gi|220952666|gb|ACL88876.1| Bx-PA [synthetic construct]
Length = 313
Score = 219 bits (557), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 99/110 (90%), Positives = 104/110 (94%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD+ WHEDCLKCGCCDCRLGEVGSTLY K NL+LCKRDYLRLFG TGYCAAC+KVIPAF
Sbjct: 107 ALDMLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYLRLFGNTGYCAACSKVIPAF 166
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVF 110
EMVMRA+ NVYHLECFACQQCNHRFCVGDRFYLC+NKILCEYDYEER VF
Sbjct: 167 EMVMRARTNVYHLECFACQQCNHRFCVGDRFYLCENKILCEYDYEERLVF 216
>gi|442616864|ref|NP_001259687.1| beadex, isoform D [Drosophila melanogaster]
gi|440216921|gb|AGB95529.1| beadex, isoform D [Drosophila melanogaster]
Length = 424
Score = 218 bits (556), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 99/110 (90%), Positives = 104/110 (94%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD+ WHEDCLKCGCCDCRLGEVGSTLY K NL+LCKRDYLRLFG TGYCAAC+KVIPAF
Sbjct: 107 ALDMLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYLRLFGNTGYCAACSKVIPAF 166
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVF 110
EMVMRA+ NVYHLECFACQQCNHRFCVGDRFYLC+NKILCEYDYEER VF
Sbjct: 167 EMVMRARTNVYHLECFACQQCNHRFCVGDRFYLCENKILCEYDYEERLVF 216
>gi|195481388|ref|XP_002101630.1| GE17735 [Drosophila yakuba]
gi|194189154|gb|EDX02738.1| GE17735 [Drosophila yakuba]
Length = 370
Score = 218 bits (556), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 99/110 (90%), Positives = 104/110 (94%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD+ WHEDCLKCGCCDCRLGEVGSTLY K NL+LCKRDYLRLFG TGYCAAC+KVIPAF
Sbjct: 164 ALDMLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYLRLFGNTGYCAACSKVIPAF 223
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVF 110
EMVMRA+ NVYHLECFACQQCNHRFCVGDRFYLC+NKILCEYDYEER VF
Sbjct: 224 EMVMRARTNVYHLECFACQQCNHRFCVGDRFYLCENKILCEYDYEERLVF 273
>gi|194766824|ref|XP_001965524.1| GF22537 [Drosophila ananassae]
gi|190619515|gb|EDV35039.1| GF22537 [Drosophila ananassae]
Length = 408
Score = 218 bits (556), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 99/110 (90%), Positives = 104/110 (94%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD+ WHEDCLKCGCCDCRLGEVGSTLY K NL+LCKRDYLRLFG TGYCAAC+KVIPAF
Sbjct: 198 ALDMLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYLRLFGNTGYCAACSKVIPAF 257
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVF 110
EMVMRA+ NVYHLECFACQQCNHRFCVGDRFYLC+NKILCEYDYEER VF
Sbjct: 258 EMVMRARTNVYHLECFACQQCNHRFCVGDRFYLCENKILCEYDYEERLVF 307
>gi|195345489|ref|XP_002039301.1| GM22905 [Drosophila sechellia]
gi|194134527|gb|EDW56043.1| GM22905 [Drosophila sechellia]
Length = 382
Score = 218 bits (556), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 99/110 (90%), Positives = 104/110 (94%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD+ WHEDCLKCGCCDCRLGEVGSTLY K NL+LCKRDYLRLFG TGYCAAC+KVIPAF
Sbjct: 176 ALDMLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYLRLFGNTGYCAACSKVIPAF 235
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVF 110
EMVMRA+ NVYHLECFACQQCNHRFCVGDRFYLC+NKILCEYDYEER VF
Sbjct: 236 EMVMRARTNVYHLECFACQQCNHRFCVGDRFYLCENKILCEYDYEERLVF 285
>gi|28571257|ref|NP_523402.4| beadex, isoform B [Drosophila melanogaster]
gi|22832512|gb|AAN09472.1| beadex, isoform B [Drosophila melanogaster]
gi|28557589|gb|AAO45200.1| RE72043p [Drosophila melanogaster]
gi|220949014|gb|ACL87050.1| Bx-PA [synthetic construct]
gi|220958192|gb|ACL91639.1| Bx-PA [synthetic construct]
Length = 384
Score = 218 bits (555), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 99/110 (90%), Positives = 104/110 (94%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD+ WHEDCLKCGCCDCRLGEVGSTLY K NL+LCKRDYLRLFG TGYCAAC+KVIPAF
Sbjct: 178 ALDMLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYLRLFGNTGYCAACSKVIPAF 237
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVF 110
EMVMRA+ NVYHLECFACQQCNHRFCVGDRFYLC+NKILCEYDYEER VF
Sbjct: 238 EMVMRARTNVYHLECFACQQCNHRFCVGDRFYLCENKILCEYDYEERLVF 287
>gi|195567549|ref|XP_002107322.1| GD17400 [Drosophila simulans]
gi|194204728|gb|EDX18304.1| GD17400 [Drosophila simulans]
Length = 371
Score = 218 bits (555), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 99/110 (90%), Positives = 104/110 (94%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD+ WHEDCLKCGCCDCRLGEVGSTLY K NL+LCKRDYLRLFG TGYCAAC+KVIPAF
Sbjct: 165 ALDMLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYLRLFGNTGYCAACSKVIPAF 224
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVF 110
EMVMRA+ NVYHLECFACQQCNHRFCVGDRFYLC+NKILCEYDYEER VF
Sbjct: 225 EMVMRARTNVYHLECFACQQCNHRFCVGDRFYLCENKILCEYDYEERLVF 274
>gi|2133743|pir||S61522 LMO protein - fruit fly (Drosophila sp.)
gi|1854501|emb|CAA58141.1| dttg [Drosophila sp.]
Length = 266
Score = 218 bits (555), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 99/110 (90%), Positives = 104/110 (94%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD+ WHEDCLKCGCCDCRLGEVGSTLY K NL+LCKRDYLRLFG TGYCAAC+KVIPAF
Sbjct: 60 ALDMLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYLRLFGNTGYCAACSKVIPAF 119
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVF 110
EMVMRA+ NVYHLECFACQQCNHRFCVGDRFYLC+NKILCEYDYEER VF
Sbjct: 120 EMVMRARTNVYHLECFACQQCNHRFCVGDRFYLCENKILCEYDYEERLVF 169
>gi|193634208|ref|XP_001949623.1| PREDICTED: LIM domain only protein 3-like [Acyrthosiphon pisum]
Length = 250
Score = 218 bits (554), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 104/153 (67%), Positives = 115/153 (75%), Gaps = 25/153 (16%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALDLFWHEDCL CGCC CRLGEVGSTLY KAN+ILCK+DY R+FG G CAAC K IPAF
Sbjct: 48 ALDLFWHEDCLMCGCCGCRLGEVGSTLYTKANMILCKKDYFRMFGNKGMCAACFKDIPAF 107
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFCVGDRFYLCD 120
EMVMRA++NVYHLECFACQQCNHRFCVGDRFYLC+NKILCEYD+
Sbjct: 108 EMVMRARSNVYHLECFACQQCNHRFCVGDRFYLCENKILCEYDF---------------- 151
Query: 121 NKILCEYDYEERQVFANIAYNPSSLAHLRRQVT 153
EER VFAN+AYNP++LA L+R T
Sbjct: 152 ---------EERMVFANMAYNPATLAQLKRHAT 175
>gi|195456746|ref|XP_002075269.1| GK17103 [Drosophila willistoni]
gi|194171354|gb|EDW86255.1| GK17103 [Drosophila willistoni]
Length = 460
Score = 218 bits (554), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 99/110 (90%), Positives = 104/110 (94%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD+ WHEDCLKCGCCDCRLGEVGSTLY K NL+LCKRDYLRLFG TGYCAAC+KVIPAF
Sbjct: 140 ALDMLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYLRLFGNTGYCAACSKVIPAF 199
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVF 110
EMVMRA+ NVYHLECFACQQCNHRFCVGDRFYLC+NKILCEYDYEER VF
Sbjct: 200 EMVMRARTNVYHLECFACQQCNHRFCVGDRFYLCENKILCEYDYEERLVF 249
>gi|442616866|ref|NP_001259688.1| beadex, isoform E [Drosophila melanogaster]
gi|440216922|gb|AGB95530.1| beadex, isoform E [Drosophila melanogaster]
Length = 327
Score = 217 bits (553), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 99/110 (90%), Positives = 104/110 (94%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD+ WHEDCLKCGCCDCRLGEVGSTLY K NL+LCKRDYLRLFG TGYCAAC+KVIPAF
Sbjct: 121 ALDMLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYLRLFGNTGYCAACSKVIPAF 180
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVF 110
EMVMRA+ NVYHLECFACQQCNHRFCVGDRFYLC+NKILCEYDYEER VF
Sbjct: 181 EMVMRARTNVYHLECFACQQCNHRFCVGDRFYLCENKILCEYDYEERLVF 230
>gi|345487674|ref|XP_001605275.2| PREDICTED: LIM/homeobox protein Lhx3-like isoform 1 [Nasonia
vitripennis]
gi|345487676|ref|XP_003425736.1| PREDICTED: LIM/homeobox protein Lhx3-like isoform 2 [Nasonia
vitripennis]
Length = 281
Score = 216 bits (551), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 106/154 (68%), Positives = 117/154 (75%), Gaps = 26/154 (16%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRLFG TG+C+AC K IPAF
Sbjct: 35 ALDAYWHEDCLKCNCCDCRLGEVGSTLYTKANLILCRRDYLRLFGNTGHCSACNKPIPAF 94
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFCVGDRFYLCD 120
EMVMRAK NVYHLECFACQQC HRFCVGDRFYLC+NKILCEYDY
Sbjct: 95 EMVMRAKTNVYHLECFACQQCYHRFCVGDRFYLCENKILCEYDY---------------- 138
Query: 121 NKILCEYDYEERQVFANIA-YNPSSLAHLRRQVT 153
EER VFAN+A + P++LAHL+RQ+
Sbjct: 139 ---------EERLVFANMALHPPTNLAHLKRQLP 163
>gi|307206046|gb|EFN84139.1| Rhombotin-1 [Harpegnathos saltator]
Length = 249
Score = 215 bits (547), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 106/154 (68%), Positives = 116/154 (75%), Gaps = 26/154 (16%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALDL+WHEDCLKCGCCDCRLGEVGSTLY KANLILCKRDYLRLFG TG CAAC K IPAF
Sbjct: 35 ALDLYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGNTGCCAACNKPIPAF 94
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFCVGDRFYLCD 120
EMVMRA+ NVYHL+CFACQQC HRFCVGDRFYLC+NKILCEYD
Sbjct: 95 EMVMRARTNVYHLDCFACQQCTHRFCVGDRFYLCENKILCEYD----------------- 137
Query: 121 NKILCEYDYEERQVFANIAY-NPSSLAHLRRQVT 153
YEER FAN+A P+SLA+++RQ+
Sbjct: 138 --------YEERLAFANMALQTPASLAYIKRQLP 163
>gi|357620282|gb|EHJ72529.1| putative rhombotin [Danaus plexippus]
Length = 180
Score = 214 bits (545), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 107/152 (70%), Positives = 116/152 (76%), Gaps = 25/152 (16%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
++ FWHEDCLKCGCCDCRLGEVGS LY KA+L+LCKRDYLRLFG TG C AC KVIPAFE
Sbjct: 1 MERFWHEDCLKCGCCDCRLGEVGSKLYYKADLMLCKRDYLRLFGATGNCVACNKVIPAFE 60
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFCVGDRFYLCDN 121
MVMRAK+ VYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY
Sbjct: 61 MVMRAKSFVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY----------------- 103
Query: 122 KILCEYDYEERQVFANIAYNPSSLAHLRRQVT 153
EER VFA++A NPS LAH+RRQV+
Sbjct: 104 --------EERLVFASMAANPSGLAHIRRQVS 127
>gi|194892543|ref|XP_001977682.1| GG19173 [Drosophila erecta]
gi|190649331|gb|EDV46609.1| GG19173 [Drosophila erecta]
Length = 419
Score = 214 bits (544), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 107/164 (65%), Positives = 120/164 (73%), Gaps = 15/164 (9%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD+ WHEDCLKCGCCDCRLGEVGSTLY K NL+LCKRDYLRLFG TGYCAAC+KVIPAF
Sbjct: 177 ALDMLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYLRLFGNTGYCAACSKVIPAF 236
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKIL-----------CEYDYEERQV 109
EMVMRA+ NVYHLECFACQQCNHR I +++Q
Sbjct: 237 EMVMRARTNVYHLECFACQQCNHRAITITTTITTITTIAISIAAMSQVRSMPGKLQKKQK 296
Query: 110 FCVGDRFYLCDNKILCEYDYEERQVFANIAYNPSSLAHLRRQVT 153
FCVGDRFYLC+NKILCEYDYEER VFA++A +P L+R V+
Sbjct: 297 FCVGDRFYLCENKILCEYDYEERLVFASMANHPM----LKRHVS 336
>gi|383853636|ref|XP_003702328.1| PREDICTED: LIM domain only protein 3-like [Megachile rotundata]
Length = 249
Score = 212 bits (539), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 103/154 (66%), Positives = 116/154 (75%), Gaps = 26/154 (16%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALDL+WHEDCLKCGCC+CRLGEVGSTLY KANLILCKRDYLRLFG TG CAAC K IPAF
Sbjct: 35 ALDLYWHEDCLKCGCCECRLGEVGSTLYTKANLILCKRDYLRLFGNTGNCAACNKHIPAF 94
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFCVGDRFYLCD 120
EMVM+A+ NVYHL+CFACQQC HRFCVG DRFYLC+
Sbjct: 95 EMVMKARTNVYHLDCFACQQCTHRFCVG-------------------------DRFYLCE 129
Query: 121 NKILCEYDYEERQVFANIAY-NPSSLAHLRRQVT 153
NKILCEYDYEER FAN++ P+SLA+++RQ+
Sbjct: 130 NKILCEYDYEERLAFANMSLQTPASLAYIKRQLP 163
>gi|391348067|ref|XP_003748273.1| PREDICTED: insulin gene enhancer protein isl-1-like [Metaseiulus
occidentalis]
Length = 365
Score = 211 bits (537), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 95/119 (79%), Positives = 104/119 (87%), Gaps = 1/119 (0%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD WHEDCLKC CCDCRLGEVGSTL+ KANLILCKRDYLRLFG TG C+AC K IPAF
Sbjct: 115 ALDQLWHEDCLKCACCDCRLGEVGSTLFHKANLILCKRDYLRLFGVTGLCSACHKQIPAF 174
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFC-VGDRFYL 118
EMVMRA+ NVYHLECFACQQCNHRFCVGDRFYL +N+ILCEYDYEER VF +G ++ +
Sbjct: 175 EMVMRARGNVYHLECFACQQCNHRFCVGDRFYLHENRILCEYDYEERMVFSQMGGQYPI 233
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 59/135 (43%), Gaps = 41/135 (30%)
Query: 45 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFC-VGDRFYLCDNKILCEYD 103
G CA C K I ++RA + ++H +C C C+ R VG + N ILC+ D
Sbjct: 95 GAQPECAGCQKPI-RERYLLRALDQLWHEDCLKCACCDCRLGEVGSTLFHKANLILCKRD 153
Query: 104 YE------------ERQV---------------------------FCVGDRFYLCDNKIL 124
Y +Q+ FCVGDRFYL +N+IL
Sbjct: 154 YLRLFGVTGLCSACHKQIPAFEMVMRARGNVYHLECFACQQCNHRFCVGDRFYLHENRIL 213
Query: 125 CEYDYEERQVFANIA 139
CEYDYEER VF+ +
Sbjct: 214 CEYDYEERMVFSQMG 228
>gi|307170933|gb|EFN63033.1| Rhombotin-1 [Camponotus floridanus]
Length = 248
Score = 211 bits (536), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 104/154 (67%), Positives = 116/154 (75%), Gaps = 26/154 (16%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILCKRDYLRLFG+TG CAAC K IPAF
Sbjct: 34 ALDSYWHEDCLKCSCCDCRLGEVGSTLYTKANLILCKRDYLRLFGSTGCCAACNKQIPAF 93
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFCVGDRFYLCD 120
EMVMRA+ NVYHL+CFACQQC HRFCVGDRFYLC+NKILCEYD
Sbjct: 94 EMVMRARTNVYHLDCFACQQCTHRFCVGDRFYLCENKILCEYD----------------- 136
Query: 121 NKILCEYDYEERQVFANIAY-NPSSLAHLRRQVT 153
YEER FAN+A +P+SLA+++RQ+
Sbjct: 137 --------YEERLAFANMAIQSPASLAYIKRQLP 162
>gi|427782399|gb|JAA56651.1| Putative rhombotin-1 [Rhipicephalus pulchellus]
Length = 294
Score = 210 bits (535), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 95/110 (86%), Positives = 99/110 (90%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD WHEDCLKC CCDCRLGEVGSTL+ KANLILCKRDYLRLFGTTG C+AC+K IPAF
Sbjct: 62 ALDQLWHEDCLKCACCDCRLGEVGSTLFTKANLILCKRDYLRLFGTTGLCSACSKTIPAF 121
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVF 110
EMVMRA+ NVYHLECFACQ CNHRFCVGDRFYL DNKILCEYDYEER F
Sbjct: 122 EMVMRARGNVYHLECFACQHCNHRFCVGDRFYLLDNKILCEYDYEERLSF 171
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 58/137 (42%), Gaps = 44/137 (32%)
Query: 50 CAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFC-VGDRFYLCDNKILCEYDYEE-- 106
CA C K I +++A + ++H +C C C+ R VG + N ILC+ DY
Sbjct: 47 CAGCQKPI-RERFLLKALDQLWHEDCLKCACCDCRLGEVGSTLFTKANLILCKRDYLRLF 105
Query: 107 -------------------------------------RQVFCVGDRFYLCDNKILCEYDY 129
FCVGDRFYL DNKILCEYDY
Sbjct: 106 GTTGLCSACSKTIPAFEMVMRARGNVYHLECFACQHCNHRFCVGDRFYLLDNKILCEYDY 165
Query: 130 EERQVFANIAY---NPS 143
EER F N+ + NPS
Sbjct: 166 EERLSFQNVPFPGHNPS 182
>gi|241738255|ref|XP_002414040.1| rhombotin, putative [Ixodes scapularis]
gi|215507894|gb|EEC17348.1| rhombotin, putative [Ixodes scapularis]
Length = 285
Score = 208 bits (530), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 95/110 (86%), Positives = 99/110 (90%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD WHEDCLKC CCDCRLGEVGSTL+ KANLILCKRDYLRLFGTTG C+AC+K IPAF
Sbjct: 81 ALDQLWHEDCLKCACCDCRLGEVGSTLFTKANLILCKRDYLRLFGTTGLCSACSKTIPAF 140
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVF 110
EMVMRA+ NVYHLECFACQ CNHRFCVGDRFYL DNKILCEYDYEER F
Sbjct: 141 EMVMRARGNVYHLECFACQHCNHRFCVGDRFYLFDNKILCEYDYEERLSF 190
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 55/131 (41%), Gaps = 41/131 (31%)
Query: 50 CAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFC-VGDRFYLCDNKILCEYDYEE-- 106
CA C K I +++A + ++H +C C C+ R VG + N ILC+ DY
Sbjct: 66 CAGCQKPIRE-RFLLKALDQLWHEDCLKCACCDCRLGEVGSTLFTKANLILCKRDYLRLF 124
Query: 107 -------------------------------------RQVFCVGDRFYLCDNKILCEYDY 129
FCVGDRFYL DNKILCEYDY
Sbjct: 125 GTTGLCSACSKTIPAFEMVMRARGNVYHLECFACQHCNHRFCVGDRFYLFDNKILCEYDY 184
Query: 130 EERQVFANIAY 140
EER F N+ +
Sbjct: 185 EERLSFQNVPF 195
>gi|443725165|gb|ELU12846.1| hypothetical protein CAPTEDRAFT_167130 [Capitella teleta]
Length = 173
Score = 208 bits (529), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 94/109 (86%), Positives = 103/109 (94%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
AL+ FWHEDCLKC CCDCRLGEVGSTL+ KANL+LC+RDYLRLFG+TGYC+AC+K+IPAF
Sbjct: 35 ALEQFWHEDCLKCSCCDCRLGEVGSTLFTKANLLLCRRDYLRLFGSTGYCSACSKMIPAF 94
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQV 109
EMVMR K NVYHLECFACQQCNHRFCVGDRFY+CDNKILCEYDYEER V
Sbjct: 95 EMVMRVKGNVYHLECFACQQCNHRFCVGDRFYMCDNKILCEYDYEERMV 143
>gi|340710497|ref|XP_003393824.1| PREDICTED: LIM domain only protein 3-like [Bombus terrestris]
Length = 249
Score = 207 bits (527), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 90/110 (81%), Positives = 101/110 (91%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+DLFWHEDCLKCGCCDCRLGEVGS+L+ +ANLILCKRDYLRLFG G+CAAC K IP F
Sbjct: 35 AMDLFWHEDCLKCGCCDCRLGEVGSSLFTRANLILCKRDYLRLFGNPGHCAACNKQIPPF 94
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVF 110
EMVM+A++NVYHL+CFACQQC HRFCVGDRFYLC+NKILCE+DYEER F
Sbjct: 95 EMVMKARSNVYHLDCFACQQCTHRFCVGDRFYLCENKILCEFDYEERLAF 144
>gi|110751065|ref|XP_001120755.1| PREDICTED: LIM domain only protein 3-like [Apis mellifera]
Length = 249
Score = 207 bits (526), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 90/110 (81%), Positives = 100/110 (90%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+DLFWHEDCLKCGCCDCRLGEVGS+L+ +ANLILCKRDYLRLFG G+CAAC K IP F
Sbjct: 35 AMDLFWHEDCLKCGCCDCRLGEVGSSLFTRANLILCKRDYLRLFGNPGHCAACNKQIPPF 94
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVF 110
EMVM+A+ NVYHL+CFACQQC HRFCVGDRFYLC+NKILCE+DYEER F
Sbjct: 95 EMVMKARTNVYHLDCFACQQCTHRFCVGDRFYLCENKILCEFDYEERLAF 144
>gi|291230776|ref|XP_002735341.1| PREDICTED: LIM domain only 1-like [Saccoglossus kowalevskii]
Length = 311
Score = 207 bits (526), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 94/116 (81%), Positives = 104/116 (89%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
AL+ +WHEDCLKC CCDCRLGEVGSTLY KANL+LCKRDYLRLFGTTGYCAAC KVIPAF
Sbjct: 64 ALEQYWHEDCLKCACCDCRLGEVGSTLYIKANLMLCKRDYLRLFGTTGYCAACAKVIPAF 123
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFCVGDRF 116
EMVMRA++NVYHLECFACQQCNHRFCVGD+FYL +NKILCE DYE+ + +G F
Sbjct: 124 EMVMRARDNVYHLECFACQQCNHRFCVGDKFYLRNNKILCEEDYEDAMMLAMGHYF 179
>gi|427781843|gb|JAA56373.1| Putative lim domain only 1 [Rhipicephalus pulchellus]
Length = 277
Score = 206 bits (524), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 97/118 (82%), Positives = 103/118 (87%), Gaps = 1/118 (0%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD WHEDCLKC CCDCRLGEVGSTL+ KANLILCKRDYLRLFGTTG C+AC+K IPAF
Sbjct: 59 ALDQLWHEDCLKCACCDCRLGEVGSTLFTKANLILCKRDYLRLFGTTGLCSACSKAIPAF 118
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFC-VGDRFY 117
EMVMRA+ NVYHLECFACQQCNHRFCVGDRFYL DN+ILCEYDYEER + V FY
Sbjct: 119 EMVMRARGNVYHLECFACQQCNHRFCVGDRFYLHDNRILCEYDYEERALMAGVPPPFY 176
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 54/130 (41%), Gaps = 41/130 (31%)
Query: 50 CAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFC-VGDRFYLCDNKILCEYDYEE-- 106
CA C K I +++A + ++H +C C C+ R VG + N ILC+ DY
Sbjct: 44 CAGCQKPI-RERFLLKALDQLWHEDCLKCACCDCRLGEVGSTLFTKANLILCKRDYLRLF 102
Query: 107 -------------------------------------RQVFCVGDRFYLCDNKILCEYDY 129
FCVGDRFYL DN+ILCEYDY
Sbjct: 103 GTTGLCSACSKAIPAFEMVMRARGNVYHLECFACQQCNHRFCVGDRFYLHDNRILCEYDY 162
Query: 130 EERQVFANIA 139
EER + A +
Sbjct: 163 EERALMAGVP 172
>gi|241738278|ref|XP_002414049.1| rhombotin, putative [Ixodes scapularis]
gi|215507903|gb|EEC17357.1| rhombotin, putative [Ixodes scapularis]
Length = 242
Score = 205 bits (522), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 95/116 (81%), Positives = 102/116 (87%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD WHEDCLKC CCDCRLGEVGSTL+ KANLILCKRDYLRLFGTTG C+AC+K IPAF
Sbjct: 63 ALDQLWHEDCLKCACCDCRLGEVGSTLFTKANLILCKRDYLRLFGTTGLCSACSKAIPAF 122
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFCVGDRF 116
EMVMRA+ NVYHLECFACQQCNHRFCVGDRFYL DN+ILCEYDYEER + +R
Sbjct: 123 EMVMRARGNVYHLECFACQQCNHRFCVGDRFYLHDNRILCEYDYEERALMAGVERL 178
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 59/145 (40%), Gaps = 41/145 (28%)
Query: 50 CAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFC-VGDRFYLCDNKILCEYDYEE-- 106
CA C K I +++A + ++H +C C C+ R VG + N ILC+ DY
Sbjct: 48 CAGCQKPIRE-RFLLKALDQLWHEDCLKCACCDCRLGEVGSTLFTKANLILCKRDYLRLF 106
Query: 107 -------------------------------------RQVFCVGDRFYLCDNKILCEYDY 129
FCVGDRFYL DN+ILCEYDY
Sbjct: 107 GTTGLCSACSKAIPAFEMVMRARGNVYHLECFACQQCNHRFCVGDRFYLHDNRILCEYDY 166
Query: 130 EERQVFANIAYNPSSLAHLRRQVTL 154
EER + A + LRR V +
Sbjct: 167 EERALMAGVERLRQRGLALRRPVAM 191
>gi|321468800|gb|EFX79783.1| hypothetical protein DAPPUDRAFT_51838 [Daphnia pulex]
Length = 161
Score = 205 bits (522), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 95/107 (88%), Positives = 101/107 (94%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALDL+WHEDCLKCGCCDCRL E GSTLY +ANL+LC+RDYLRLFGTTGYCAAC KVIPAF
Sbjct: 33 ALDLYWHEDCLKCGCCDCRLSENGSTLYTRANLVLCRRDYLRLFGTTGYCAACGKVIPAF 92
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEER 107
EMVM+AK NVYHLECFACQ CNHRFCVGD+FYLCDNKILCEYDYEER
Sbjct: 93 EMVMKAKGNVYHLECFACQNCNHRFCVGDKFYLCDNKILCEYDYEER 139
>gi|350427422|ref|XP_003494753.1| PREDICTED: LIM domain only protein 3-like [Bombus impatiens]
Length = 249
Score = 205 bits (521), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 89/107 (83%), Positives = 100/107 (93%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+DLFWHEDCLKCGCCDCRLGEVGS+L+ +ANLILCKRDYLRLFG G+CAAC K IP F
Sbjct: 35 AMDLFWHEDCLKCGCCDCRLGEVGSSLFTRANLILCKRDYLRLFGIPGHCAACNKQIPPF 94
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEER 107
EMVM+A++NVYHL+CFACQQC HRFCVGDRFYLC+NKILCE+DYEER
Sbjct: 95 EMVMKARSNVYHLDCFACQQCTHRFCVGDRFYLCENKILCEFDYEER 141
>gi|383853634|ref|XP_003702327.1| PREDICTED: rhombotin-1-like [Megachile rotundata]
Length = 222
Score = 203 bits (517), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 96/156 (61%), Positives = 116/156 (74%), Gaps = 28/156 (17%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD+ WHEDCLKC CCDC+L +VGSTLY K+N ILCK+DYLR+FG++G+CA C K IPAF
Sbjct: 35 ALDMLWHEDCLKCSCCDCKLVDVGSTLYTKSNFILCKKDYLRMFGSSGHCAVCNKSIPAF 94
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFCVGDRFYLCD 120
EMVMRA+ NVYHLECFACQQCNHRFC+GD+FYLC+NKILCEYDY
Sbjct: 95 EMVMRARTNVYHLECFACQQCNHRFCIGDKFYLCENKILCEYDY---------------- 138
Query: 121 NKILCEYDYEERQVFANIAYNP---SSLAHLRRQVT 153
EER VFAN+A +P ++LAH++R +T
Sbjct: 139 ---------EERLVFANMALHPPHTATLAHIKRHLT 165
>gi|195147434|ref|XP_002014685.1| GL18822 [Drosophila persimilis]
gi|194106638|gb|EDW28681.1| GL18822 [Drosophila persimilis]
Length = 381
Score = 199 bits (505), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 90/112 (80%), Positives = 96/112 (85%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD+ WH+DCLKCGCCDCRLGEVGSTLY+ NLILCK DY RLFG TGYCAAC+KVI AF
Sbjct: 202 ALDMLWHQDCLKCGCCDCRLGEVGSTLYKTGNLILCKLDYFRLFGNTGYCAACSKVISAF 261
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFCV 112
EMVMRA NVYH +CFACQQCNHR CVGDRFYLC NKILCEYDYEE +F
Sbjct: 262 EMVMRAHTNVYHFDCFACQQCNHRLCVGDRFYLCKNKILCEYDYEEWLLFAT 313
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 55/130 (42%), Gaps = 41/130 (31%)
Query: 50 CAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFC-VGDRFYLCDNKILCEYDY---- 104
CA C K I +RA + ++H +C C C+ R VG Y N ILC+ DY
Sbjct: 187 CAGCGKHIKD-RYFLRALDMLWHQDCLKCGCCDCRLGEVGSTLYKTGNLILCKLDYFRLF 245
Query: 105 ---------------------EERQVF--------------CVGDRFYLCDNKILCEYDY 129
V+ CVGDRFYLC NKILCEYDY
Sbjct: 246 GNTGYCAACSKVISAFEMVMRAHTNVYHFDCFACQQCNHRLCVGDRFYLCKNKILCEYDY 305
Query: 130 EERQVFANIA 139
EE +FA IA
Sbjct: 306 EEWLLFATIA 315
>gi|198473944|ref|XP_002132591.1| GA25913 [Drosophila pseudoobscura pseudoobscura]
gi|198138178|gb|EDY69993.1| GA25913 [Drosophila pseudoobscura pseudoobscura]
Length = 399
Score = 197 bits (501), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 90/112 (80%), Positives = 97/112 (86%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD+ WH+DCLKCGCCDCRLGEVGSTLY+ NLILCK DY RLFG TGYCAAC+KVI AF
Sbjct: 208 ALDMLWHQDCLKCGCCDCRLGEVGSTLYKTGNLILCKLDYFRLFGNTGYCAACSKVIFAF 267
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFCV 112
EMVMRA+ NVYHL CFACQQCN+R CVGDRFYLC NKILCEYDYEE +F
Sbjct: 268 EMVMRARTNVYHLHCFACQQCNYRLCVGDRFYLCMNKILCEYDYEEWLLFAT 319
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 56/130 (43%), Gaps = 41/130 (31%)
Query: 50 CAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFC-VGDRFYLCDNKILCEYDYE--- 105
CA C K I +RA + ++H +C C C+ R VG Y N ILC+ DY
Sbjct: 193 CAGCGKHI-KDRYFLRALDMLWHQDCLKCGCCDCRLGEVGSTLYKTGNLILCKLDYFRLF 251
Query: 106 ---------ERQVF---------------------------CVGDRFYLCDNKILCEYDY 129
+ +F CVGDRFYLC NKILCEYDY
Sbjct: 252 GNTGYCAACSKVIFAFEMVMRARTNVYHLHCFACQQCNYRLCVGDRFYLCMNKILCEYDY 311
Query: 130 EERQVFANIA 139
EE +FA IA
Sbjct: 312 EEWLLFATIA 321
>gi|195177608|ref|XP_002028925.1| GL13160 [Drosophila persimilis]
gi|194107602|gb|EDW29645.1| GL13160 [Drosophila persimilis]
Length = 399
Score = 194 bits (494), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 88/112 (78%), Positives = 97/112 (86%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD+ WH+DCLKCGCCDCRLGEVGSTLY+ NL+LCK DY RLFG TGYCAAC+KVI AF
Sbjct: 208 ALDMLWHQDCLKCGCCDCRLGEVGSTLYKTGNLMLCKLDYYRLFGNTGYCAACSKVIFAF 267
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFCV 112
+MVMRA+ NVYHL CFACQQCN+R CVGDRFYLC NKILCEYDYEE +F
Sbjct: 268 QMVMRARTNVYHLHCFACQQCNYRLCVGDRFYLCMNKILCEYDYEEWLLFAT 319
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 56/130 (43%), Gaps = 41/130 (31%)
Query: 50 CAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFC-VGDRFYLCDNKILCEYDYE--- 105
CA C K I +RA + ++H +C C C+ R VG Y N +LC+ DY
Sbjct: 193 CAGCGKHI-KDRYFLRALDMLWHQDCLKCGCCDCRLGEVGSTLYKTGNLMLCKLDYYRLF 251
Query: 106 ---------ERQVF---------------------------CVGDRFYLCDNKILCEYDY 129
+ +F CVGDRFYLC NKILCEYDY
Sbjct: 252 GNTGYCAACSKVIFAFQMVMRARTNVYHLHCFACQQCNYRLCVGDRFYLCMNKILCEYDY 311
Query: 130 EERQVFANIA 139
EE +FA IA
Sbjct: 312 EEWLLFATIA 321
>gi|195147432|ref|XP_002014684.1| GL19311 [Drosophila persimilis]
gi|194106637|gb|EDW28680.1| GL19311 [Drosophila persimilis]
Length = 399
Score = 194 bits (493), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 88/112 (78%), Positives = 97/112 (86%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD+ WH+DCLKCGCCDCRLGEVGSTLY+ NL+LCK DY RLFG TGYCAAC+KVI AF
Sbjct: 208 ALDMLWHQDCLKCGCCDCRLGEVGSTLYKTGNLMLCKLDYYRLFGNTGYCAACSKVIFAF 267
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFCV 112
+MVMRA+ NVYHL CFACQQCN+R CVGDRFYLC NKILCEYDYEE +F
Sbjct: 268 QMVMRARTNVYHLHCFACQQCNYRLCVGDRFYLCMNKILCEYDYEEWLLFAT 319
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 56/130 (43%), Gaps = 41/130 (31%)
Query: 50 CAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFC-VGDRFYLCDNKILCEYDYE--- 105
CA C K I +RA + ++H +C C C+ R VG Y N +LC+ DY
Sbjct: 193 CAGCGKHI-KDRYFLRALDMLWHQDCLKCGCCDCRLGEVGSTLYKTGNLMLCKLDYYRLF 251
Query: 106 ---------ERQVF---------------------------CVGDRFYLCDNKILCEYDY 129
+ +F CVGDRFYLC NKILCEYDY
Sbjct: 252 GNTGYCAACSKVIFAFQMVMRARTNVYHLHCFACQQCNYRLCVGDRFYLCMNKILCEYDY 311
Query: 130 EERQVFANIA 139
EE +FA IA
Sbjct: 312 EEWLLFATIA 321
>gi|350427425|ref|XP_003494754.1| PREDICTED: LIM domain only protein 3-like [Bombus impatiens]
Length = 220
Score = 194 bits (493), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 94/154 (61%), Positives = 112/154 (72%), Gaps = 28/154 (18%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD+FWHEDCLKC C+CRL E G +L+ K+NLILCK+DYL+LFG TG+CAAC K IPAFE
Sbjct: 34 LDMFWHEDCLKCNSCNCRLVEAGPSLFIKSNLILCKKDYLKLFGHTGHCAACNKTIPAFE 93
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFCVGDRFYLCDN 121
MVMRA+ NVYHLECFACQQCN+RFC+GD+F+LC+NKILCE DY
Sbjct: 94 MVMRARTNVYHLECFACQQCNYRFCIGDKFFLCENKILCESDY----------------- 136
Query: 122 KILCEYDYEERQVFANIAYNPSS---LAHLRRQV 152
EER VFAN+A +P S LAH++RQV
Sbjct: 137 --------EERLVFANMAVHPPSTATLAHIKRQV 162
>gi|340710495|ref|XP_003393823.1| PREDICTED: LIM domain only protein 3-like [Bombus terrestris]
Length = 220
Score = 194 bits (493), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 94/154 (61%), Positives = 112/154 (72%), Gaps = 28/154 (18%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD+FWHEDCLKC C+CRL E G +L+ K+NLILCK+DYL+LFG TG+CAAC K IPAFE
Sbjct: 34 LDMFWHEDCLKCNSCNCRLVEAGPSLFIKSNLILCKKDYLKLFGHTGHCAACNKTIPAFE 93
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFCVGDRFYLCDN 121
MVMRA+ NVYHLECFACQQCN+RFC+GD+F+LC+NKILCE DY
Sbjct: 94 MVMRARTNVYHLECFACQQCNYRFCIGDKFFLCENKILCESDY----------------- 136
Query: 122 KILCEYDYEERQVFANIAYNPSS---LAHLRRQV 152
EER VFAN+A +P S LAH++RQV
Sbjct: 137 --------EERLVFANMAVHPPSTATLAHIKRQV 162
>gi|48095039|ref|XP_394342.1| PREDICTED: LIM domain only protein 3-like [Apis mellifera]
Length = 218
Score = 193 bits (490), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 95/154 (61%), Positives = 111/154 (72%), Gaps = 28/154 (18%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD+FWHEDCLKC C+CRL E G +LY K+NLILCK+DYL+LFG TG+CAAC K IPAFE
Sbjct: 34 LDMFWHEDCLKCNSCNCRLVEAGPSLYIKSNLILCKKDYLKLFGLTGHCAACNKTIPAFE 93
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFCVGDRFYLCDN 121
MVMRA+ NVYHLECFACQQCN+RFCVGD+F+LC+NKILCE DY
Sbjct: 94 MVMRARTNVYHLECFACQQCNYRFCVGDKFFLCENKILCESDY----------------- 136
Query: 122 KILCEYDYEERQVFANIAYNPSS---LAHLRRQV 152
EER VFAN+A +P S LA ++RQV
Sbjct: 137 --------EERLVFANMAVHPPSTATLAQIKRQV 162
>gi|405975337|gb|EKC39910.1| Rhombotin-1 [Crassostrea gigas]
Length = 198
Score = 192 bits (488), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 93/124 (75%), Positives = 103/124 (83%), Gaps = 14/124 (11%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLI-------LCKRD-------YLRLFGT 46
AL+ +WHEDCLKC CCDCRLGEVGSTL+ KANL+ +C YLRLFGT
Sbjct: 39 ALEQYWHEDCLKCSCCDCRLGEVGSTLFTKANLLHWLIRIEVCVSGGKDWQFIYLRLFGT 98
Query: 47 TGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
TGYC+AC+K+IPAFEMVMRAK+NVYHLECFACQQCNHRFCVGD+FYLCDNKILCEYDYEE
Sbjct: 99 TGYCSACSKMIPAFEMVMRAKSNVYHLECFACQQCNHRFCVGDKFYLCDNKILCEYDYEE 158
Query: 107 RQVF 110
R VF
Sbjct: 159 RMVF 162
>gi|24659990|gb|AAH39512.1| LIM domain only 1 (rhombotin 1), partial [Homo sapiens]
Length = 217
Score = 191 bits (484), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 87/109 (79%), Positives = 99/109 (90%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRLFGTTG CAAC+K+IPAF
Sbjct: 100 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAF 159
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQV 109
EMVMRA++NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ DYEE Q+
Sbjct: 160 EMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQMDYEEGQL 208
>gi|281341700|gb|EFB17284.1| hypothetical protein PANDA_004271 [Ailuropoda melanoleuca]
Length = 192
Score = 191 bits (484), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 88/109 (80%), Positives = 99/109 (90%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRLFGTTG CAAC+K+IPAF
Sbjct: 75 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAF 134
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQV 109
EMVMRA++NVYHL+CFACQ CN RFCVGDRF+L +N ILC+ DYEE Q+
Sbjct: 135 EMVMRARDNVYHLDCFACQLCNQRFCVGDRFFLKNNMILCQMDYEEGQL 183
>gi|326912347|ref|XP_003202514.1| PREDICTED: hypothetical protein LOC100545049, partial [Meleagris
gallopavo]
Length = 391
Score = 191 bits (484), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 86/106 (81%), Positives = 96/106 (90%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRLFG TG CAAC+K+IPAF
Sbjct: 274 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAF 333
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EMVMRAK+NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ DYEE
Sbjct: 334 EMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEE 379
>gi|321454865|gb|EFX66018.1| hypothetical protein DAPPUDRAFT_65078 [Daphnia pulex]
Length = 137
Score = 190 bits (482), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 90/106 (84%), Positives = 96/106 (90%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CC CRLGEVGS L+ KANLILCKRDYLRLFG TG CAAC K IPAF
Sbjct: 32 ALDSYWHEDCLKCSCCGCRLGEVGSNLFTKANLILCKRDYLRLFGATGNCAACCKAIPAF 91
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EMVMRAK+NVYHL+CFACQQC+ RFCVGDRFYLCDN+ILCEYDYEE
Sbjct: 92 EMVMRAKSNVYHLDCFACQQCHQRFCVGDRFYLCDNQILCEYDYEE 137
>gi|260785867|ref|XP_002587981.1| hypothetical protein BRAFLDRAFT_88960 [Branchiostoma floridae]
gi|229273137|gb|EEN43992.1| hypothetical protein BRAFLDRAFT_88960 [Branchiostoma floridae]
Length = 198
Score = 189 bits (481), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 84/106 (79%), Positives = 97/106 (91%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD FWHEDCLKC CC+CRLGEVGSTL+ KANLILC+RDYLRLFGTTG CA C K+IPAF
Sbjct: 66 ALDQFWHEDCLKCACCECRLGEVGSTLFTKANLILCRRDYLRLFGTTGSCAVCAKIIPAF 125
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
E+VMRA NNVYHL+CFACQ+CNHRFCVGD+F+LC+N ILC+ DY++
Sbjct: 126 EIVMRAGNNVYHLDCFACQRCNHRFCVGDKFFLCENTILCQLDYQD 171
>gi|301761580|ref|XP_002916216.1| PREDICTED: rhombotin-1-like [Ailuropoda melanoleuca]
Length = 163
Score = 189 bits (480), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 88/109 (80%), Positives = 99/109 (90%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRLFGTTG CAAC+K+IPAF
Sbjct: 46 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAF 105
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQV 109
EMVMRA++NVYHL+CFACQ CN RFCVGDRF+L +N ILC+ DYEE Q+
Sbjct: 106 EMVMRARDNVYHLDCFACQLCNQRFCVGDRFFLKNNMILCQMDYEEGQL 154
>gi|126332439|ref|XP_001379124.1| PREDICTED: rhombotin-1-like [Monodelphis domestica]
Length = 214
Score = 189 bits (479), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 87/109 (79%), Positives = 99/109 (90%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRLFGTTG CAAC+K+IPAF
Sbjct: 97 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAF 156
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQV 109
EMVMRA++NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ DYEE Q+
Sbjct: 157 EMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQMDYEEGQL 205
>gi|410044796|ref|XP_003951874.1| PREDICTED: rhombotin-1 [Pan troglodytes]
Length = 193
Score = 189 bits (479), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 87/109 (79%), Positives = 99/109 (90%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRLFGTTG CAAC+K+IPAF
Sbjct: 76 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAF 135
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQV 109
EMVMRA++NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ DYEE Q+
Sbjct: 136 EMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQMDYEEGQL 184
>gi|441645968|ref|XP_004090708.1| PREDICTED: rhombotin-1 isoform 2 [Nomascus leucogenys]
Length = 193
Score = 189 bits (479), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 87/109 (79%), Positives = 99/109 (90%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRLFGTTG CAAC+K+IPAF
Sbjct: 76 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAF 135
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQV 109
EMVMRA++NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ DYEE Q+
Sbjct: 136 EMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQMDYEEGQL 184
>gi|426367361|ref|XP_004050701.1| PREDICTED: rhombotin-1 isoform 2 [Gorilla gorilla gorilla]
Length = 193
Score = 188 bits (478), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 87/109 (79%), Positives = 99/109 (90%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRLFGTTG CAAC+K+IPAF
Sbjct: 76 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAF 135
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQV 109
EMVMRA++NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ DYEE Q+
Sbjct: 136 EMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQMDYEEGQL 184
>gi|410913147|ref|XP_003970050.1| PREDICTED: rhombotin-1-like [Takifugu rubripes]
Length = 158
Score = 188 bits (478), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 87/109 (79%), Positives = 99/109 (90%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRLFGTTG CAAC+K+IPAF
Sbjct: 41 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAF 100
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQV 109
EMVMRA++NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ DYEE Q+
Sbjct: 101 EMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQMDYEEGQL 149
>gi|242020913|ref|XP_002430895.1| LIM-only protein, putative [Pediculus humanus corporis]
gi|212516106|gb|EEB18157.1| LIM-only protein, putative [Pediculus humanus corporis]
Length = 237
Score = 188 bits (478), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 90/127 (70%), Positives = 100/127 (78%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+L WHEDCLKC CC+ RLGEVG++LY +ANLILCKRDYLRLFG TGYC+AC K+IPAF
Sbjct: 51 SLGRNWHEDCLKCTCCEARLGEVGASLYTRANLILCKRDYLRLFGNTGYCSACKKIIPAF 110
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFCVGDRFYLCD 120
EMVMRAK NVYHLECFACQ C +RFCVGDRFYLCDNKILCE DY ER + G D
Sbjct: 111 EMVMRAKTNVYHLECFACQLCGYRFCVGDRFYLCDNKILCESDYNERIGYETGRITTGYD 170
Query: 121 NKILCEY 127
N I +
Sbjct: 171 NSISVSF 177
>gi|395543424|ref|XP_003773618.1| PREDICTED: rhombotin-1 [Sarcophilus harrisii]
Length = 155
Score = 188 bits (477), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 87/109 (79%), Positives = 99/109 (90%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRLFGTTG CAAC+K+IPAF
Sbjct: 38 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAF 97
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQV 109
EMVMRA++NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ DYEE Q+
Sbjct: 98 EMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQMDYEEGQL 146
>gi|226442662|ref|NP_001139870.1| Rhombotin-1 [Salmo salar]
gi|221219524|gb|ACM08423.1| Rhombotin-1 [Salmo salar]
Length = 155
Score = 188 bits (477), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 87/109 (79%), Positives = 99/109 (90%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRLFGTTG CAAC+K+IPAF
Sbjct: 38 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAF 97
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQV 109
EMVMRA++NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ DYEE Q+
Sbjct: 98 EMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQMDYEEGQL 146
>gi|147906368|ref|NP_001089735.1| rhombotin-1 [Xenopus laevis]
gi|170671950|ref|NP_001116283.1| uncharacterized protein LOC100144284 [Xenopus (Silurana)
tropicalis]
gi|123899828|sp|Q3B8H4.1|RBTN1_XENLA RecName: Full=Rhombotin-1; AltName: Full=LIM domain only protein 1;
Short=LMO-1
gi|77748294|gb|AAI06432.1| MGC131122 protein [Xenopus laevis]
gi|165905264|gb|AAI57153.1| LOC100144284 protein [Xenopus (Silurana) tropicalis]
Length = 156
Score = 188 bits (477), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 87/109 (79%), Positives = 99/109 (90%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRLFGTTG CAAC+K+IPAF
Sbjct: 39 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAF 98
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQV 109
EMVMRA++NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ DYEE Q+
Sbjct: 99 EMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQMDYEEGQL 147
>gi|350534892|ref|NP_001232644.1| putative LIM domain only 1 variant 2 [Taeniopygia guttata]
gi|197127604|gb|ACH44102.1| putative LIM domain only 1 variant 2 [Taeniopygia guttata]
Length = 156
Score = 188 bits (477), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 87/109 (79%), Positives = 99/109 (90%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRLFGTTG CAAC+K+IPAF
Sbjct: 39 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAF 98
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQV 109
EMVMRA++NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ DYEE Q+
Sbjct: 99 EMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQMDYEEGQL 147
>gi|426245706|ref|XP_004016646.1| PREDICTED: rhombotin-1 [Ovis aries]
Length = 158
Score = 188 bits (477), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 87/109 (79%), Positives = 99/109 (90%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRLFGTTG CAAC+K+IPAF
Sbjct: 41 ALDQYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAF 100
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQV 109
EMVMRA++NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ DYEE Q+
Sbjct: 101 EMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQMDYEEGQL 149
>gi|4505005|ref|NP_002306.1| rhombotin-1 isoform a [Homo sapiens]
gi|73988404|ref|XP_851199.1| PREDICTED: rhombotin-1 isoform 1 [Canis lupus familiaris]
gi|149719424|ref|XP_001504951.1| PREDICTED: rhombotin-1-like [Equus caballus]
gi|297268472|ref|XP_002799696.1| PREDICTED: rhombotin-1-like [Macaca mulatta]
gi|297689330|ref|XP_002822108.1| PREDICTED: rhombotin-1 isoform 1 [Pongo abelii]
gi|332211700|ref|XP_003254951.1| PREDICTED: rhombotin-1 isoform 1 [Nomascus leucogenys]
gi|332835816|ref|XP_003312955.1| PREDICTED: rhombotin-1 isoform 2 [Pan troglodytes]
gi|390470213|ref|XP_003734256.1| PREDICTED: rhombotin-1-like [Callithrix jacchus]
gi|395815205|ref|XP_003781125.1| PREDICTED: rhombotin-1 isoform 1 [Otolemur garnettii]
gi|397494622|ref|XP_003818173.1| PREDICTED: rhombotin-1 isoform 1 [Pan paniscus]
gi|402894304|ref|XP_003910306.1| PREDICTED: rhombotin-1 isoform 1 [Papio anubis]
gi|403254192|ref|XP_003919861.1| PREDICTED: rhombotin-1 [Saimiri boliviensis boliviensis]
gi|410973386|ref|XP_003993134.1| PREDICTED: rhombotin-1 [Felis catus]
gi|426367359|ref|XP_004050700.1| PREDICTED: rhombotin-1 isoform 1 [Gorilla gorilla gorilla]
gi|132532|sp|P25800.1|RBTN1_HUMAN RecName: Full=Rhombotin-1; AltName: Full=Cysteine-rich protein
TTG-1; AltName: Full=LIM domain only protein 1;
Short=LMO-1; AltName: Full=T-cell translocation protein
1
gi|340454|gb|AAA36819.1| T-cell translocation protein [Homo sapiens]
gi|11071536|emb|CAC14587.1| LIM domain only 1 protein [Homo sapiens]
gi|46854536|gb|AAH69793.1| LIM domain only 1 (rhombotin 1) [Homo sapiens]
gi|46854582|gb|AAH69752.1| LIM domain only 1 (rhombotin 1) [Homo sapiens]
gi|46854710|gb|AAH69673.1| LIM domain only 1 (rhombotin 1) [Homo sapiens]
gi|64654051|gb|AAH96056.1| LIM domain only 1 (rhombotin 1) [Homo sapiens]
gi|64654605|gb|AAH96057.1| LIM domain only 1 (rhombotin 1) [Homo sapiens]
gi|119589032|gb|EAW68626.1| LIM domain only 1 (rhombotin 1) [Homo sapiens]
gi|312152710|gb|ADQ32867.1| LIM domain only 1 (rhombotin 1) [synthetic construct]
Length = 156
Score = 188 bits (477), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 87/109 (79%), Positives = 99/109 (90%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRLFGTTG CAAC+K+IPAF
Sbjct: 39 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAF 98
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQV 109
EMVMRA++NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ DYEE Q+
Sbjct: 99 EMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQMDYEEGQL 147
>gi|27545195|ref|NP_775326.1| rhombotin-1 [Danio rerio]
gi|432851744|ref|XP_004067063.1| PREDICTED: rhombotin-1-like [Oryzias latipes]
gi|82213250|sp|Q8JFQ2.1|RBTN1_DANRE RecName: Full=Rhombotin-1; AltName: Full=LIM domain only protein 1;
Short=LMO-1
gi|22652062|gb|AAN03595.1|AF398514_1 LIM-only 1 [Danio rerio]
gi|62531025|gb|AAH92690.1| LIM domain only 1 [Danio rerio]
gi|182889294|gb|AAI64905.1| Lmo1 protein [Danio rerio]
Length = 155
Score = 188 bits (477), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 87/109 (79%), Positives = 99/109 (90%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRLFGTTG CAAC+K+IPAF
Sbjct: 38 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAF 97
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQV 109
EMVMRA++NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ DYEE Q+
Sbjct: 98 EMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQMDYEEGQL 146
>gi|394025675|ref|NP_001257357.1| rhombotin-1 isoform b [Homo sapiens]
gi|332835818|ref|XP_001165367.2| PREDICTED: rhombotin-1 isoform 1 [Pan troglodytes]
gi|395815207|ref|XP_003781126.1| PREDICTED: rhombotin-1 isoform 2 [Otolemur garnettii]
gi|402894306|ref|XP_003910307.1| PREDICTED: rhombotin-1 isoform 2 [Papio anubis]
Length = 155
Score = 187 bits (476), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 87/109 (79%), Positives = 99/109 (90%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRLFGTTG CAAC+K+IPAF
Sbjct: 38 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAF 97
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQV 109
EMVMRA++NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ DYEE Q+
Sbjct: 98 EMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQMDYEEGQL 146
>gi|354497087|ref|XP_003510653.1| PREDICTED: rhombotin-1-like [Cricetulus griseus]
Length = 156
Score = 187 bits (476), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 87/109 (79%), Positives = 99/109 (90%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRLFGTTG CAAC+K+IPAF
Sbjct: 39 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAF 98
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQV 109
EMVMRA++NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ DYEE Q+
Sbjct: 99 EMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQMDYEEGQL 147
>gi|163915157|ref|NP_001106526.1| rhombotin-1 [Sus scrofa]
gi|160858218|dbj|BAF93842.1| LIM domain only 1 [Sus scrofa]
Length = 156
Score = 187 bits (476), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 87/109 (79%), Positives = 99/109 (90%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRLFGTTG CAAC+K+IPAF
Sbjct: 39 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAF 98
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQV 109
EMVMRA++NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ DYEE Q+
Sbjct: 99 EMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQLDYEEGQL 147
>gi|116734837|ref|NP_001069363.1| rhombotin-1 [Bos taurus]
gi|119361442|sp|Q0P5B3.1|RBTN1_BOVIN RecName: Full=Rhombotin-1; AltName: Full=LIM domain only protein 1;
Short=LMO-1
gi|112362108|gb|AAI20274.1| LIM domain only 1 (rhombotin 1) [Bos taurus]
gi|296480122|tpg|DAA22237.1| TPA: rhombotin-1 [Bos taurus]
Length = 156
Score = 187 bits (476), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 87/109 (79%), Positives = 99/109 (90%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRLFGTTG CAAC+K+IPAF
Sbjct: 39 ALDQYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAF 98
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQV 109
EMVMRA++NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ DYEE Q+
Sbjct: 99 EMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQMDYEEGQL 147
>gi|432103234|gb|ELK30474.1| Rhombotin-1, partial [Myotis davidii]
Length = 156
Score = 187 bits (476), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 87/109 (79%), Positives = 99/109 (90%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRLFGTTG CAAC+K+IPAF
Sbjct: 39 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAF 98
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQV 109
EMVMRA++NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ DYEE Q+
Sbjct: 99 EMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQMDYEEGQL 147
>gi|327281281|ref|XP_003225377.1| PREDICTED: rhombotin-1-like [Anolis carolinensis]
Length = 155
Score = 187 bits (476), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 87/109 (79%), Positives = 99/109 (90%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRLFGTTG CAAC+K+IPAF
Sbjct: 38 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAF 97
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQV 109
EMVMRA++NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ DYEE Q+
Sbjct: 98 EMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQMDYEEGQL 146
>gi|351700295|gb|EHB03214.1| Rhombotin-1, partial [Heterocephalus glaber]
gi|355566730|gb|EHH23109.1| hypothetical protein EGK_06496, partial [Macaca mulatta]
gi|355752348|gb|EHH56468.1| hypothetical protein EGM_05879, partial [Macaca fascicularis]
Length = 148
Score = 187 bits (476), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 87/109 (79%), Positives = 99/109 (90%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRLFGTTG CAAC+K+IPAF
Sbjct: 31 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAF 90
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQV 109
EMVMRA++NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ DYEE Q+
Sbjct: 91 EMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQMDYEEGQL 139
>gi|344280595|ref|XP_003412068.1| PREDICTED: rhombotin-1-like [Loxodonta africana]
gi|348553346|ref|XP_003462488.1| PREDICTED: rhombotin-1-like [Cavia porcellus]
gi|344248106|gb|EGW04210.1| Rhombotin-1 [Cricetulus griseus]
gi|444522351|gb|ELV13369.1| Rhombotin-1 [Tupaia chinensis]
Length = 145
Score = 187 bits (476), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 87/109 (79%), Positives = 99/109 (90%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRLFGTTG CAAC+K+IPAF
Sbjct: 28 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAF 87
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQV 109
EMVMRA++NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ DYEE Q+
Sbjct: 88 EMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQMDYEEGQL 136
>gi|449280864|gb|EMC88089.1| Rhombotin-1, partial [Columba livia]
Length = 151
Score = 187 bits (475), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 87/109 (79%), Positives = 99/109 (90%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRLFGTTG CAAC+K+IPAF
Sbjct: 34 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAF 93
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQV 109
EMVMRA++NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ DYEE Q+
Sbjct: 94 EMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQMDYEEGQL 142
>gi|120974283|gb|ABM46668.1| LMO1 [Gorilla gorilla]
gi|121483886|gb|ABM54243.1| LMO1 [Pan paniscus]
gi|124111156|gb|ABM91959.1| LMO1 [Pan troglodytes]
Length = 147
Score = 187 bits (475), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 87/109 (79%), Positives = 99/109 (90%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRLFGTTG CAAC+K+IPAF
Sbjct: 30 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAF 89
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQV 109
EMVMRA++NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ DYEE Q+
Sbjct: 90 EMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQMDYEEGQL 138
>gi|326920034|ref|XP_003206281.1| PREDICTED: rhombotin-1-like [Meleagris gallopavo]
gi|363734128|ref|XP_003641345.1| PREDICTED: rhombotin-1-like isoform 1 [Gallus gallus]
gi|363734130|ref|XP_003641346.1| PREDICTED: rhombotin-1-like isoform 2 [Gallus gallus]
Length = 145
Score = 187 bits (475), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 87/109 (79%), Positives = 99/109 (90%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRLFGTTG CAAC+K+IPAF
Sbjct: 28 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAF 87
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQV 109
EMVMRA++NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ DYEE Q+
Sbjct: 88 EMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQMDYEEGQL 136
>gi|348509785|ref|XP_003442427.1| PREDICTED: rhombotin-1-like [Oreochromis niloticus]
Length = 169
Score = 187 bits (475), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 87/109 (79%), Positives = 99/109 (90%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRLFGTTG CAAC+K+IPAF
Sbjct: 52 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAF 111
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQV 109
EMVMRA++NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ DYEE Q+
Sbjct: 112 EMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQMDYEEGQL 160
>gi|427778219|gb|JAA54561.1| Putative lim domain only 1 [Rhipicephalus pulchellus]
Length = 315
Score = 187 bits (475), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 97/156 (62%), Positives = 103/156 (66%), Gaps = 39/156 (25%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKAN---------------------------- 32
ALD WHEDCLKC CCDCRLGEVGSTL+ KAN
Sbjct: 59 ALDQLWHEDCLKCACCDCRLGEVGSTLFTKANLILCKRDYLRLFGTTGLCSACSKAIPAF 118
Query: 33 ----------LILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCN 82
LILCKRDYLRLFGTTG C+AC+K IPAFEMVMRA+ NVYHLECFACQQCN
Sbjct: 119 EMVMRARGXXLILCKRDYLRLFGTTGLCSACSKAIPAFEMVMRARGNVYHLECFACQQCN 178
Query: 83 HRFCVGDRFYLCDNKILCEYDYEERQVFC-VGDRFY 117
HRFCVGDRFYL DN+ILCEYDYEER + V FY
Sbjct: 179 HRFCVGDRFYLHDNRILCEYDYEERALMAGVPPPFY 214
>gi|431919610|gb|ELK17998.1| Rhombotin-1 [Pteropus alecto]
Length = 145
Score = 187 bits (475), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 87/109 (79%), Positives = 99/109 (90%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRLFGTTG CAAC+K+IPAF
Sbjct: 28 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAF 87
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQV 109
EMVMRA++NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ DYEE Q+
Sbjct: 88 EMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQMDYEEGQL 136
>gi|440900839|gb|ELR51884.1| Rhombotin-1, partial [Bos grunniens mutus]
Length = 148
Score = 187 bits (475), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 87/109 (79%), Positives = 99/109 (90%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRLFGTTG CAAC+K+IPAF
Sbjct: 31 ALDQYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAF 90
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQV 109
EMVMRA++NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ DYEE Q+
Sbjct: 91 EMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQMDYEEGQL 139
>gi|403286719|ref|XP_003934625.1| PREDICTED: LIM domain only protein 3 [Saimiri boliviensis
boliviensis]
Length = 163
Score = 186 bits (472), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 86/106 (81%), Positives = 96/106 (90%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRLFG TG CAAC+K+IPAF
Sbjct: 46 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAF 105
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EMVMRAK+NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ DYEE
Sbjct: 106 EMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEE 151
>gi|395850545|ref|XP_003797844.1| PREDICTED: LIM domain only protein 3 [Otolemur garnettii]
Length = 163
Score = 186 bits (472), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 86/106 (81%), Positives = 96/106 (90%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRLFG TG CAAC+K+IPAF
Sbjct: 46 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAF 105
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EMVMRAK+NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ DYEE
Sbjct: 106 EMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEE 151
>gi|343790984|ref|NP_001230541.1| LIM domain only protein 3 isoform 3 [Homo sapiens]
gi|332232844|ref|XP_003265612.1| PREDICTED: LIM domain only protein 3-like [Nomascus leucogenys]
gi|332838730|ref|XP_003313578.1| PREDICTED: uncharacterized protein LOC465319 [Pan troglodytes]
gi|397491239|ref|XP_003816580.1| PREDICTED: LIM domain only protein 3-like [Pan paniscus]
gi|426371876|ref|XP_004052866.1| PREDICTED: LIM domain only protein 3-like [Gorilla gorilla gorilla]
gi|194377506|dbj|BAG57701.1| unnamed protein product [Homo sapiens]
gi|221045430|dbj|BAH14392.1| unnamed protein product [Homo sapiens]
Length = 163
Score = 186 bits (472), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 86/106 (81%), Positives = 96/106 (90%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRLFG TG CAAC+K+IPAF
Sbjct: 46 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAF 105
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EMVMRAK+NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ DYEE
Sbjct: 106 EMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEE 151
>gi|301766676|ref|XP_002918759.1| PREDICTED: LIM domain only protein 3-like [Ailuropoda melanoleuca]
Length = 163
Score = 186 bits (472), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 86/106 (81%), Positives = 96/106 (90%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRLFG TG CAAC+K+IPAF
Sbjct: 46 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAF 105
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EMVMRAK+NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ DYEE
Sbjct: 106 EMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEE 151
>gi|395538520|ref|XP_003771227.1| PREDICTED: LIM domain only protein 3 isoform 2 [Sarcophilus
harrisii]
Length = 163
Score = 186 bits (472), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 86/106 (81%), Positives = 96/106 (90%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRLFG TG CAAC+K+IPAF
Sbjct: 46 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAF 105
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EMVMRAK+NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ DYEE
Sbjct: 106 EMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEE 151
>gi|426225422|ref|XP_004006865.1| PREDICTED: LIM domain only protein 3 [Ovis aries]
Length = 170
Score = 186 bits (472), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 86/106 (81%), Positives = 96/106 (90%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRLFG TG CAAC+K+IPAF
Sbjct: 53 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAF 112
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EMVMRAK+NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ DYEE
Sbjct: 113 EMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEE 158
>gi|148684980|gb|EDL16927.1| LIM domain only 1, isoform CRA_a [Mus musculus]
Length = 155
Score = 186 bits (471), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 86/106 (81%), Positives = 97/106 (91%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRLFGTTG CAAC+K+IPAF
Sbjct: 38 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAF 97
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EMVMRA++NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ DYEE
Sbjct: 98 EMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQVDYEE 143
>gi|296210850|ref|XP_002752233.1| PREDICTED: LIM domain only protein 3-like isoform 1 [Callithrix
jacchus]
Length = 167
Score = 186 bits (471), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 86/106 (81%), Positives = 96/106 (90%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRLFG TG CAAC+K+IPAF
Sbjct: 50 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAF 109
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EMVMRAK+NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ DYEE
Sbjct: 110 EMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEE 155
>gi|149068370|gb|EDM17922.1| rCG40540, isoform CRA_b [Rattus norvegicus]
Length = 156
Score = 186 bits (471), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 86/106 (81%), Positives = 97/106 (91%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRLFGTTG CAAC+K+IPAF
Sbjct: 39 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAF 98
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EMVMRA++NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ DYEE
Sbjct: 99 EMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQMDYEE 144
>gi|145651807|ref|NP_620812.2| LIM domain only protein 3 [Rattus norvegicus]
gi|149068369|gb|EDM17921.1| rCG40540, isoform CRA_a [Rattus norvegicus]
Length = 155
Score = 186 bits (471), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 86/106 (81%), Positives = 97/106 (91%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRLFGTTG CAAC+K+IPAF
Sbjct: 38 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAF 97
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EMVMRA++NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ DYEE
Sbjct: 98 EMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQMDYEE 143
>gi|345792348|ref|XP_866550.2| PREDICTED: LIM domain only protein 3 isoform 6 [Canis lupus
familiaris]
Length = 163
Score = 186 bits (471), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 86/106 (81%), Positives = 96/106 (90%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRLFG TG CAAC+K+IPAF
Sbjct: 46 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAF 105
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EMVMRAK+NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ DYEE
Sbjct: 106 EMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEE 151
>gi|16975506|ref|NP_476514.1| rhombotin-1 [Mus musculus]
gi|50401115|sp|Q924W9.1|RBTN1_MOUSE RecName: Full=Rhombotin-1; AltName: Full=Cysteine-rich protein
TTG-1; AltName: Full=LIM domain only protein 1;
Short=LMO-1; AltName: Full=T-cell translocation protein
1
gi|14253116|emb|CAC39310.1| putative LMO1 homologue [Mus musculus]
gi|31418699|gb|AAH53074.1| LIM domain only 1 [Mus musculus]
gi|74227271|dbj|BAE21734.1| unnamed protein product [Mus musculus]
gi|148684982|gb|EDL16929.1| LIM domain only 1, isoform CRA_c [Mus musculus]
Length = 156
Score = 186 bits (471), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 86/106 (81%), Positives = 97/106 (91%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRLFGTTG CAAC+K+IPAF
Sbjct: 39 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAF 98
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EMVMRA++NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ DYEE
Sbjct: 99 EMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQVDYEE 144
>gi|13569715|gb|AAK31207.1|AF353304_1 neuronal specific transcription factor DAT1 [Rattus norvegicus]
Length = 155
Score = 185 bits (470), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 86/106 (81%), Positives = 97/106 (91%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRLFGTTG CAAC+K+IPAF
Sbjct: 38 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAF 97
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EMVMRA++NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ DYEE
Sbjct: 98 EMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEE 143
>gi|149068371|gb|EDM17923.1| rCG40540, isoform CRA_c [Rattus norvegicus]
Length = 145
Score = 185 bits (470), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 86/106 (81%), Positives = 97/106 (91%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRLFGTTG CAAC+K+IPAF
Sbjct: 28 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAF 87
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EMVMRA++NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ DYEE
Sbjct: 88 EMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQMDYEE 133
>gi|395850543|ref|XP_003797843.1| PREDICTED: LIM domain only protein 3 [Otolemur garnettii]
Length = 156
Score = 185 bits (470), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 86/106 (81%), Positives = 96/106 (90%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRLFG TG CAAC+K+IPAF
Sbjct: 39 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAF 98
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EMVMRAK+NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ DYEE
Sbjct: 99 EMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEE 144
>gi|343790981|ref|NP_001230540.1| LIM domain only protein 3 isoform 2 [Homo sapiens]
gi|224096300|ref|XP_002196668.1| PREDICTED: LIM domain only protein 3 isoform 2 [Taeniopygia
guttata]
gi|296210852|ref|XP_002752234.1| PREDICTED: LIM domain only protein 3-like isoform 2 [Callithrix
jacchus]
gi|332232836|ref|XP_003265608.1| PREDICTED: LIM domain only protein 3-like [Nomascus leucogenys]
gi|332838722|ref|XP_520773.3| PREDICTED: uncharacterized protein LOC465319 [Pan troglodytes]
gi|345792350|ref|XP_003433617.1| PREDICTED: LIM domain only protein 3 [Canis lupus familiaris]
gi|363728014|ref|XP_416410.3| PREDICTED: LIM domain only protein 3 [Gallus gallus]
gi|395538518|ref|XP_003771226.1| PREDICTED: LIM domain only protein 3 isoform 1 [Sarcophilus
harrisii]
gi|397491237|ref|XP_003816579.1| PREDICTED: LIM domain only protein 3-like [Pan paniscus]
gi|403286717|ref|XP_003934624.1| PREDICTED: LIM domain only protein 3 [Saimiri boliviensis
boliviensis]
gi|410963922|ref|XP_003988507.1| PREDICTED: LIM domain only protein 3 isoform 1 [Felis catus]
gi|426225414|ref|XP_004006861.1| PREDICTED: LIM domain only protein 3 [Ovis aries]
gi|426371864|ref|XP_004052860.1| PREDICTED: LIM domain only protein 3-like [Gorilla gorilla gorilla]
gi|62148930|dbj|BAD93349.1| hypothetical protein [Homo sapiens]
gi|355564057|gb|EHH20557.1| hypothetical protein EGK_03435 [Macaca mulatta]
gi|355785943|gb|EHH66126.1| hypothetical protein EGM_03045 [Macaca fascicularis]
Length = 156
Score = 185 bits (470), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 86/106 (81%), Positives = 96/106 (90%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRLFG TG CAAC+K+IPAF
Sbjct: 39 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAF 98
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EMVMRAK+NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ DYEE
Sbjct: 99 EMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEE 144
>gi|148684981|gb|EDL16928.1| LIM domain only 1, isoform CRA_b [Mus musculus]
Length = 145
Score = 185 bits (470), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 86/106 (81%), Positives = 97/106 (91%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRLFGTTG CAAC+K+IPAF
Sbjct: 28 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAF 87
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EMVMRA++NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ DYEE
Sbjct: 88 EMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQVDYEE 133
>gi|34098349|sp|Q99MB5.2|LMO3_RAT RecName: Full=LIM domain only protein 3; Short=LMO-3; AltName:
Full=Neuronal-specific transcription factor DAT1
Length = 145
Score = 185 bits (470), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 86/106 (81%), Positives = 97/106 (91%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRLFGTTG CAAC+K+IPAF
Sbjct: 28 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAF 87
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EMVMRA++NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ DYEE
Sbjct: 88 EMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEE 133
>gi|432942706|ref|XP_004083043.1| PREDICTED: LIM domain only protein 3-like [Oryzias latipes]
Length = 156
Score = 185 bits (469), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 86/106 (81%), Positives = 96/106 (90%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRLFG TG CAAC+K+IPAF
Sbjct: 39 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAF 98
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EMVMRAK+NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ DYEE
Sbjct: 99 EMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEE 144
>gi|348569402|ref|XP_003470487.1| PREDICTED: LIM domain only protein 3-like [Cavia porcellus]
Length = 156
Score = 185 bits (469), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 86/106 (81%), Positives = 96/106 (90%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRLFG TG CAAC+K+IPAF
Sbjct: 39 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAF 98
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EMVMRAK+NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ DYEE
Sbjct: 99 EMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEE 144
>gi|338725822|ref|XP_003365206.1| PREDICTED: LOW QUALITY PROTEIN: LIM domain only protein 3-like
[Equus caballus]
Length = 168
Score = 185 bits (469), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 86/106 (81%), Positives = 96/106 (90%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRLFG TG CAAC+K+IPAF
Sbjct: 51 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAF 110
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EMVMRAK+NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ DYEE
Sbjct: 111 EMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEE 156
>gi|348536393|ref|XP_003455681.1| PREDICTED: LIM domain only protein 3-like [Oreochromis niloticus]
Length = 156
Score = 185 bits (469), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 86/106 (81%), Positives = 95/106 (89%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRLFG TG CAAC+K+IPAF
Sbjct: 39 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAF 98
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EMVMRAK NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ DYEE
Sbjct: 99 EMVMRAKENVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEE 144
>gi|318052393|ref|NP_001187844.1| LIM domain only protein 3 [Ictalurus punctatus]
gi|308324124|gb|ADO29197.1| lim domain only protein 3 [Ictalurus punctatus]
Length = 156
Score = 184 bits (468), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 86/106 (81%), Positives = 95/106 (89%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRLFG TG CAAC+K+IPAF
Sbjct: 39 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAF 98
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EMVMRAK NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ DYEE
Sbjct: 99 EMVMRAKENVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEE 144
>gi|344251414|gb|EGW07518.1| LIM domain only protein 3 [Cricetulus griseus]
Length = 149
Score = 184 bits (468), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 86/106 (81%), Positives = 96/106 (90%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRLFG TG CAAC+K+IPAF
Sbjct: 32 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAF 91
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EMVMRAK+NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ DYEE
Sbjct: 92 EMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEE 137
>gi|281352404|gb|EFB27988.1| hypothetical protein PANDA_007272 [Ailuropoda melanoleuca]
Length = 149
Score = 184 bits (468), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 86/106 (81%), Positives = 96/106 (90%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRLFG TG CAAC+K+IPAF
Sbjct: 32 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAF 91
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EMVMRAK+NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ DYEE
Sbjct: 92 EMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEE 137
>gi|449271287|gb|EMC81748.1| LIM domain only protein 3, partial [Columba livia]
Length = 147
Score = 184 bits (468), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 86/106 (81%), Positives = 96/106 (90%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRLFG TG CAAC+K+IPAF
Sbjct: 30 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAF 89
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EMVMRAK+NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ DYEE
Sbjct: 90 EMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEE 135
>gi|147902408|ref|NP_001084116.1| LIM domain only protein 3 [Xenopus laevis]
gi|82225303|sp|Q9YH16.1|LMO3_XENLA RecName: Full=LIM domain only protein 3; Short=LMO-3; AltName:
Full=LIM domain only protein 1; Short=LMO-1; Short=xLMO1
gi|4100164|gb|AAD00763.1| transcription factor XLMO1 [Xenopus laevis]
Length = 156
Score = 184 bits (468), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 86/106 (81%), Positives = 95/106 (89%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRLFG TG CAAC+K+IPAF
Sbjct: 39 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAF 98
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EMVMRAK NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ DYEE
Sbjct: 99 EMVMRAKENVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEE 144
>gi|391328654|ref|XP_003738800.1| PREDICTED: rhombotin-1-like [Metaseiulus occidentalis]
Length = 193
Score = 184 bits (468), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 86/105 (81%), Positives = 94/105 (89%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
AL+ FWHEDCLKC CC+CRLGEVGSTL+ K+NLILCKRDYLRLFGTTG C AC K IPAF
Sbjct: 53 ALEQFWHEDCLKCACCECRLGEVGSTLFTKSNLILCKRDYLRLFGTTGLCCACEKGIPAF 112
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRAK NVYHL+CFACQQCN RFCVGDRF+L +N+ILCE DYE
Sbjct: 113 EMVMRAKGNVYHLDCFACQQCNLRFCVGDRFFLHENRILCETDYE 157
>gi|21361802|ref|NP_061110.2| LIM domain only protein 3 isoform 1 [Homo sapiens]
gi|46402195|ref|NP_997105.1| LIM domain only protein 3 [Mus musculus]
gi|47778935|ref|NP_001001395.1| LIM domain only protein 3 isoform 1 [Homo sapiens]
gi|114052438|ref|NP_001039802.1| LIM domain only protein 3 [Bos taurus]
gi|162951801|ref|NP_001106155.1| LIM domain only protein 3 [Sus scrofa]
gi|205830463|ref|NP_001127650.2| LIM domain only protein 3 isoform 2 [Pongo abelii]
gi|205830488|ref|NP_001125415.1| LIM domain only protein 3 isoform 1 [Pongo abelii]
gi|343790975|ref|NP_001230538.1| LIM domain only protein 3 isoform 1 [Homo sapiens]
gi|343790979|ref|NP_001230539.1| LIM domain only protein 3 isoform 1 [Homo sapiens]
gi|388453193|ref|NP_001253235.1| LIM domain only protein 3 [Macaca mulatta]
gi|73997103|ref|XP_866536.1| PREDICTED: LIM domain only protein 3 isoform 5 [Canis lupus
familiaris]
gi|224096294|ref|XP_002196644.1| PREDICTED: LIM domain only protein 3 isoform 1 [Taeniopygia
guttata]
gi|224096298|ref|XP_002196694.1| PREDICTED: LIM domain only protein 3 isoform 3 [Taeniopygia
guttata]
gi|291392560|ref|XP_002712669.1| PREDICTED: LIM domain only 3 [Oryctolagus cuniculus]
gi|296210858|ref|XP_002752237.1| PREDICTED: LIM domain only protein 3-like isoform 5 [Callithrix
jacchus]
gi|296210864|ref|XP_002752240.1| PREDICTED: LIM domain only protein 3-like isoform 8 [Callithrix
jacchus]
gi|327282546|ref|XP_003226003.1| PREDICTED: LIM domain only protein 3-like [Anolis carolinensis]
gi|332232834|ref|XP_003265607.1| PREDICTED: LIM domain only protein 3-like [Nomascus leucogenys]
gi|332232838|ref|XP_003265609.1| PREDICTED: LIM domain only protein 3-like [Nomascus leucogenys]
gi|332232840|ref|XP_003265610.1| PREDICTED: LIM domain only protein 3-like [Nomascus leucogenys]
gi|332232842|ref|XP_003265611.1| PREDICTED: LIM domain only protein 3-like [Nomascus leucogenys]
gi|332232846|ref|XP_003265613.1| PREDICTED: LIM domain only protein 3-like [Nomascus leucogenys]
gi|332232848|ref|XP_003265614.1| PREDICTED: LIM domain only protein 3-like [Nomascus leucogenys]
gi|332232850|ref|XP_003265615.1| PREDICTED: LIM domain only protein 3-like [Nomascus leucogenys]
gi|332838720|ref|XP_003313574.1| PREDICTED: uncharacterized protein LOC465319 [Pan troglodytes]
gi|332838724|ref|XP_003313575.1| PREDICTED: uncharacterized protein LOC465319 [Pan troglodytes]
gi|332838726|ref|XP_003313576.1| PREDICTED: uncharacterized protein LOC465319 [Pan troglodytes]
gi|332838728|ref|XP_003313577.1| PREDICTED: uncharacterized protein LOC465319 [Pan troglodytes]
gi|332838732|ref|XP_003313579.1| PREDICTED: uncharacterized protein LOC465319 [Pan troglodytes]
gi|332838734|ref|XP_003339274.1| PREDICTED: uncharacterized protein LOC465319 [Pan troglodytes]
gi|332838736|ref|XP_003313580.1| PREDICTED: uncharacterized protein LOC465319 [Pan troglodytes]
gi|334348292|ref|XP_001366731.2| PREDICTED: LIM domain only protein 3-like [Monodelphis domestica]
gi|354477495|ref|XP_003500955.1| PREDICTED: LIM domain only protein 3-like [Cricetulus griseus]
gi|392347749|ref|XP_003749911.1| PREDICTED: LIM domain only protein 3-like [Rattus norvegicus]
gi|402885348|ref|XP_003906123.1| PREDICTED: LIM domain only protein 3 [Papio anubis]
gi|410046363|ref|XP_003952174.1| PREDICTED: uncharacterized protein LOC465319 [Pan troglodytes]
gi|410046365|ref|XP_003952175.1| PREDICTED: uncharacterized protein LOC465319 [Pan troglodytes]
gi|410963924|ref|XP_003988508.1| PREDICTED: LIM domain only protein 3 isoform 2 [Felis catus]
gi|410963926|ref|XP_003988509.1| PREDICTED: LIM domain only protein 3 isoform 3 [Felis catus]
gi|426225412|ref|XP_004006860.1| PREDICTED: LIM domain only protein 3 [Ovis aries]
gi|426225416|ref|XP_004006862.1| PREDICTED: LIM domain only protein 3 [Ovis aries]
gi|426225418|ref|XP_004006863.1| PREDICTED: LIM domain only protein 3 [Ovis aries]
gi|426225420|ref|XP_004006864.1| PREDICTED: LIM domain only protein 3 [Ovis aries]
gi|426371866|ref|XP_004052861.1| PREDICTED: LIM domain only protein 3-like [Gorilla gorilla gorilla]
gi|426371868|ref|XP_004052862.1| PREDICTED: LIM domain only protein 3-like [Gorilla gorilla gorilla]
gi|426371870|ref|XP_004052863.1| PREDICTED: LIM domain only protein 3-like [Gorilla gorilla gorilla]
gi|426371872|ref|XP_004052864.1| PREDICTED: LIM domain only protein 3-like [Gorilla gorilla gorilla]
gi|426371874|ref|XP_004052865.1| PREDICTED: LIM domain only protein 3-like [Gorilla gorilla gorilla]
gi|426371878|ref|XP_004052867.1| PREDICTED: LIM domain only protein 3-like [Gorilla gorilla gorilla]
gi|426371880|ref|XP_004052868.1| PREDICTED: LIM domain only protein 3-like [Gorilla gorilla gorilla]
gi|426371882|ref|XP_004052869.1| PREDICTED: LIM domain only protein 3-like [Gorilla gorilla gorilla]
gi|426371884|ref|XP_004052870.1| PREDICTED: LIM domain only protein 3-like [Gorilla gorilla gorilla]
gi|441669886|ref|XP_004092147.1| PREDICTED: LIM domain only protein 3-like [Nomascus leucogenys]
gi|441669892|ref|XP_004092148.1| PREDICTED: LIM domain only protein 3-like [Nomascus leucogenys]
gi|449482200|ref|XP_004174330.1| PREDICTED: LIM domain only protein 3 [Taeniopygia guttata]
gi|34098514|sp|Q8BZL8.1|LMO3_MOUSE RecName: Full=LIM domain only protein 3; Short=LMO-3; AltName:
Full=Neuronal-specific transcription factor DAT1
gi|34098603|sp|Q8TAP4.1|LMO3_HUMAN RecName: Full=LIM domain only protein 3; Short=LMO-3; AltName:
Full=Neuronal-specific transcription factor DAT1;
AltName: Full=Rhombotin-3
gi|75070808|sp|Q5RBW7.1|LMO3_PONAB RecName: Full=LIM domain only protein 3; Short=LMO-3
gi|108860786|sp|Q2KIA3.1|LMO3_BOVIN RecName: Full=LIM domain only protein 3; Short=LMO-3
gi|20070930|gb|AAH26311.1| LIM domain only 3 (rhombotin-like 2) [Homo sapiens]
gi|26329757|dbj|BAC28617.1| unnamed protein product [Mus musculus]
gi|34784567|gb|AAH57086.1| Lmo3 protein [Mus musculus]
gi|55727608|emb|CAH90559.1| hypothetical protein [Pongo abelii]
gi|55727981|emb|CAH90743.1| hypothetical protein [Pongo abelii]
gi|55730077|emb|CAH91763.1| hypothetical protein [Pongo abelii]
gi|55730911|emb|CAH92174.1| hypothetical protein [Pongo abelii]
gi|55733334|emb|CAH93349.1| hypothetical protein [Pongo abelii]
gi|55733457|emb|CAH93407.1| hypothetical protein [Pongo abelii]
gi|62148932|dbj|BAD93350.1| hypothetical protein [Homo sapiens]
gi|71052099|gb|AAH50085.1| LMO3 protein [Homo sapiens]
gi|86438236|gb|AAI12713.1| LIM domain only 3 (rhombotin-like 2) [Bos taurus]
gi|119616777|gb|EAW96371.1| LIM domain only 3 (rhombotin-like 2), isoform CRA_b [Homo sapiens]
gi|119616778|gb|EAW96372.1| LIM domain only 3 (rhombotin-like 2), isoform CRA_b [Homo sapiens]
gi|119616781|gb|EAW96375.1| LIM domain only 3 (rhombotin-like 2), isoform CRA_b [Homo sapiens]
gi|119616782|gb|EAW96376.1| LIM domain only 3 (rhombotin-like 2), isoform CRA_b [Homo sapiens]
gi|119616783|gb|EAW96377.1| LIM domain only 3 (rhombotin-like 2), isoform CRA_b [Homo sapiens]
gi|160858220|dbj|BAF93843.1| LIM domain only 3 [Sus scrofa]
gi|167773937|gb|ABZ92403.1| LIM domain only 3 (rhombotin-like 2) [synthetic construct]
gi|168279025|dbj|BAG11392.1| LIM domain only protein 3 [synthetic construct]
gi|296487271|tpg|DAA29384.1| TPA: LIM domain only protein 3 [Bos taurus]
gi|380783249|gb|AFE63500.1| LIM domain only protein 3 isoform 1 [Macaca mulatta]
gi|380783251|gb|AFE63501.1| LIM domain only protein 3 isoform 1 [Macaca mulatta]
Length = 145
Score = 184 bits (468), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 86/106 (81%), Positives = 96/106 (90%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRLFG TG CAAC+K+IPAF
Sbjct: 28 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAF 87
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EMVMRAK+NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ DYEE
Sbjct: 88 EMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEE 133
>gi|391348069|ref|XP_003748274.1| PREDICTED: rhombotin-1-like [Metaseiulus occidentalis]
Length = 215
Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 84/106 (79%), Positives = 93/106 (87%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD WHEDCLKCG CDCRLGEVGSTLY K NLILC+RDYLR++GT G C+AC K IP+F
Sbjct: 103 ALDKMWHEDCLKCGSCDCRLGEVGSTLYFKNNLILCRRDYLRIYGTAGLCSACHKTIPSF 162
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EMVMRA++NVYHLECFACQQCNHRFCVGDRFYL +N+ILCE DY
Sbjct: 163 EMVMRARSNVYHLECFACQQCNHRFCVGDRFYLHNNRILCEDDYSP 208
>gi|50924940|gb|AAH79734.1| XLMO1 protein [Xenopus laevis]
Length = 145
Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 86/106 (81%), Positives = 95/106 (89%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRLFG TG CAAC+K+IPAF
Sbjct: 28 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAF 87
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EMVMRAK NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ DYEE
Sbjct: 88 EMVMRAKENVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEE 133
>gi|66472234|ref|NP_001018575.1| LIM domain only protein 3 [Danio rerio]
gi|82228853|sp|Q503U0.1|LMO3_DANRE RecName: Full=LIM domain only protein 3; Short=LMO-3
gi|63101819|gb|AAH95186.1| LIM domain only 3 [Danio rerio]
Length = 145
Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 86/106 (81%), Positives = 95/106 (89%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRLFG TG CAAC+K+IPAF
Sbjct: 28 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAF 87
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EMVMRAK NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ DYEE
Sbjct: 88 EMVMRAKENVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEE 133
>gi|47220587|emb|CAG05613.1| unnamed protein product [Tetraodon nigroviridis]
Length = 317
Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 89/151 (58%), Positives = 105/151 (69%), Gaps = 4/151 (2%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CCDCRLG VGSTLY +ANLILC+RDYLRLFG TG CAAC K+IPAF
Sbjct: 31 ALDRYWHEDCLKCACCDCRLGRVGSTLYTRANLILCRRDYLRLFGVTGNCAACGKMIPAF 90
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFCVGDRF---- 116
EMVMRA++NVYHL+CFACQ C RFCVGDRF+L +N ILC+ DYE + +R
Sbjct: 91 EMVMRARDNVYHLDCFACQLCRQRFCVGDRFFLKNNMILCQLDYEGGPLNGSAERPPQFG 150
Query: 117 YLCDNKILCEYDYEERQVFANIAYNPSSLAH 147
N E + A+NP ++A
Sbjct: 151 PFPSNDAPSESSGTTAGASFSRAHNPEAIAR 181
>gi|21754884|dbj|BAC04582.1| unnamed protein product [Homo sapiens]
Length = 145
Score = 182 bits (462), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 85/106 (80%), Positives = 95/106 (89%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A D +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRLFG TG CAAC+K+IPAF
Sbjct: 28 APDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAF 87
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EMVMRAK+NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ DYEE
Sbjct: 88 EMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEE 133
>gi|189065489|dbj|BAG35328.1| unnamed protein product [Homo sapiens]
Length = 145
Score = 182 bits (461), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 85/106 (80%), Positives = 95/106 (89%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRLFG TG CAAC+K+IPAF
Sbjct: 28 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAF 87
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EMVMRAK+NVYHL+CFACQ CN R CVGD+F+L +N ILC+ DYEE
Sbjct: 88 EMVMRAKDNVYHLDCFACQLCNQRSCVGDKFFLKNNMILCQTDYEE 133
>gi|410918403|ref|XP_003972675.1| PREDICTED: LIM domain only protein 3-like [Takifugu rubripes]
Length = 156
Score = 182 bits (461), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 84/106 (79%), Positives = 96/106 (90%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD FWHEDCLKC CC+CRLGEVGSTLY KANLILC+RDYLRLFG TG CAAC+K+IPAF
Sbjct: 39 ALDKFWHEDCLKCACCECRLGEVGSTLYTKANLILCRRDYLRLFGATGSCAACSKLIPAF 98
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EMVMRAK+NVYHL+CFACQ C+ RFCVGD+F+L +N ILC+ DYE+
Sbjct: 99 EMVMRAKDNVYHLDCFACQLCSQRFCVGDKFFLKNNLILCQTDYED 144
>gi|380010949|ref|XP_003689578.1| PREDICTED: LOW QUALITY PROTEIN: LIM domain only protein 3-like
[Apis florea]
Length = 249
Score = 181 bits (459), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 89/111 (80%), Positives = 99/111 (89%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+DLFWHEDCLKC CCDCRLGEVGS+L+ +ANLILCKRDYLRLFG G+CAAC K IP F
Sbjct: 35 AMDLFWHEDCLKCXCCDCRLGEVGSSLFTRANLILCKRDYLRLFGNPGHCAACNKQIPPF 94
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFC 111
EMVM+A+ NVYHL+CFACQQC HRFCVGDRFYLC+NKILCE+DYEER F
Sbjct: 95 EMVMKARTNVYHLDCFACQQCTHRFCVGDRFYLCENKILCEFDYEERLAFA 145
>gi|156405705|ref|XP_001640872.1| predicted protein [Nematostella vectensis]
gi|156228008|gb|EDO48809.1| predicted protein [Nematostella vectensis]
Length = 155
Score = 181 bits (459), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 84/110 (76%), Positives = 96/110 (87%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CC+CRLGEVGSTLY KANLILCKRDYLRLFGT G+C+ C K IPAF
Sbjct: 35 ALDRYWHEDCLKCSCCECRLGEVGSTLYTKANLILCKRDYLRLFGTRGFCSVCCKTIPAF 94
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVF 110
EMVMRA++NVYHLECF+CQ+CN RFCVGD+FYL +N+ILC DYEE +
Sbjct: 95 EMVMRARDNVYHLECFSCQRCNQRFCVGDKFYLFNNRILCVDDYEEMMSY 144
>gi|324520352|gb|ADY47616.1| LIM domain only protein 3 [Ascaris suum]
Length = 163
Score = 180 bits (457), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 83/110 (75%), Positives = 93/110 (84%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
AL WHEDCLKC CC CRLGE+GS LY K ++ILC RDYLRLFG TG CAAC K IPAF
Sbjct: 21 ALGKLWHEDCLKCTCCHCRLGELGSKLYYKQSMILCARDYLRLFGLTGVCAACDKNIPAF 80
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVF 110
E+VMRAK+NVYHL+CFAC CNHRFC+GD++YLCDNKILC+YDYEER F
Sbjct: 81 ELVMRAKSNVYHLQCFACHICNHRFCIGDKYYLCDNKILCQYDYEERMTF 130
>gi|47217221|emb|CAF96744.1| unnamed protein product [Tetraodon nigroviridis]
Length = 157
Score = 178 bits (452), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 82/106 (77%), Positives = 95/106 (89%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD FWHEDCLKC CC+CRLGEVGSTLY KANLILC+RDYLRLFG TG CA C+K+IPAF
Sbjct: 40 ALDKFWHEDCLKCACCECRLGEVGSTLYTKANLILCRRDYLRLFGATGNCAVCSKLIPAF 99
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EMVMRA++NVYHL+CFACQ C+ RFCVGD+F+L +N ILC+ DYE+
Sbjct: 100 EMVMRARDNVYHLDCFACQLCSQRFCVGDKFFLKNNLILCQTDYED 145
>gi|432860305|ref|XP_004069493.1| PREDICTED: rhombotin-1-like [Oryzias latipes]
Length = 155
Score = 178 bits (452), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 81/106 (76%), Positives = 94/106 (88%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD FWHEDCLKC CCDCRLG VGSTLY ++NLILC+RDYLRLFG TG CAAC+K+IPAF
Sbjct: 38 ALDRFWHEDCLKCACCDCRLGRVGSTLYTRSNLILCRRDYLRLFGVTGNCAACSKLIPAF 97
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EMVMRA++NVYHL+CFACQ C RFCVGD+F+L +N ILC+ DYE+
Sbjct: 98 EMVMRARDNVYHLDCFACQLCRQRFCVGDKFFLKNNMILCQLDYEK 143
>gi|348535893|ref|XP_003455432.1| PREDICTED: rhombotin-1-like [Oreochromis niloticus]
Length = 155
Score = 177 bits (449), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 81/105 (77%), Positives = 93/105 (88%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CCDCRLG VGSTLY +ANLILC+RDYLRLFG TG CAAC+K+IPAF
Sbjct: 38 ALDRYWHEDCLKCACCDCRLGRVGSTLYTRANLILCRRDYLRLFGVTGNCAACSKLIPAF 97
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA++NVYHL+CFACQ C RFCVGD+F+L +N ILC+ DYE
Sbjct: 98 EMVMRARDNVYHLDCFACQLCRQRFCVGDKFFLKNNMILCQLDYE 142
>gi|47230457|emb|CAF99650.1| unnamed protein product [Tetraodon nigroviridis]
Length = 169
Score = 175 bits (444), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 87/130 (66%), Positives = 99/130 (76%), Gaps = 21/130 (16%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR------------------ 42
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLR
Sbjct: 31 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRQERHTLHRTPDKHKSWAY 90
Query: 43 ---LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKIL 99
LFGTTG CAAC+K+IPAFEMVMRA++NVYHL+CFACQ CN RFCVGD+F+L +N IL
Sbjct: 91 KFRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMIL 150
Query: 100 CEYDYEERQV 109
C+ DYEE Q+
Sbjct: 151 CQMDYEEGQL 160
>gi|332024562|gb|EGI64760.1| Rhombotin-1 [Acromyrmex echinatior]
Length = 124
Score = 169 bits (427), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 77/85 (90%), Positives = 82/85 (96%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD+FWHEDCLKCGCCDCRLGEVGSTLY KANLILCKRDYLRLFG TG+CAAC+KVIPAF
Sbjct: 35 ALDMFWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGNTGHCAACSKVIPAF 94
Query: 61 EMVMRAKNNVYHLECFACQQCNHRF 85
EMVMRA+ NVYHLECFACQQCNHR+
Sbjct: 95 EMVMRARTNVYHLECFACQQCNHRY 119
>gi|21706633|gb|AAH34128.1| Lmo3 protein, partial [Mus musculus]
Length = 112
Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 79/100 (79%), Positives = 88/100 (88%)
Query: 7 HEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRA 66
H LKC CCDCRLGEVGSTLY KANLILC+RDYLRLFG TG CAAC+K+IPAFEMVMRA
Sbjct: 1 HASGLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRA 60
Query: 67 KNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
K+NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ DYEE
Sbjct: 61 KDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEE 100
>gi|307170935|gb|EFN63035.1| Rhombotin-1 [Camponotus floridanus]
Length = 118
Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 76/84 (90%), Positives = 81/84 (96%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD++WHEDCLKCGCCDCRLGEVGSTLY KANLILCKRDYLRLFG TG+CAAC+KVIPAF
Sbjct: 35 ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGNTGHCAACSKVIPAF 94
Query: 61 EMVMRAKNNVYHLECFACQQCNHR 84
EMVMRA+ NVYHLECFACQQCNHR
Sbjct: 95 EMVMRARTNVYHLECFACQQCNHR 118
>gi|322796207|gb|EFZ18783.1| hypothetical protein SINV_11229 [Solenopsis invicta]
Length = 127
Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 76/84 (90%), Positives = 81/84 (96%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD++WHEDCLKCGCCDCRLGEVGSTLY KANLILCKRDYLRLFG TG+CAAC+KVIPAF
Sbjct: 44 ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGNTGHCAACSKVIPAF 103
Query: 61 EMVMRAKNNVYHLECFACQQCNHR 84
EMVMRA+ NVYHLECFACQQCNHR
Sbjct: 104 EMVMRARTNVYHLECFACQQCNHR 127
>gi|307206044|gb|EFN84137.1| Rhombotin-1 [Harpegnathos saltator]
Length = 118
Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 76/84 (90%), Positives = 81/84 (96%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD++WHEDCLKCGCCDCRLGEVGSTLY KANLILCKRDYLRLFG TG+CAAC+KVIPAF
Sbjct: 35 ALDMYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGNTGHCAACSKVIPAF 94
Query: 61 EMVMRAKNNVYHLECFACQQCNHR 84
EMVMRA+ NVYHLECFACQQCNHR
Sbjct: 95 EMVMRARTNVYHLECFACQQCNHR 118
>gi|195130787|ref|XP_002009832.1| GI15025 [Drosophila mojavensis]
gi|193908282|gb|EDW07149.1| GI15025 [Drosophila mojavensis]
Length = 667
Score = 166 bits (419), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 76/94 (80%), Positives = 81/94 (86%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD+ WHEDCLKCGCCDCRLGEVGSTLY K NL+LCKRDYLRLFG TGYCAAC+KVIPAF
Sbjct: 184 ALDMLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYLRLFGNTGYCAACSKVIPAF 243
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC 94
EMVMRA+ NVYHLECFACQQCNH + Y C
Sbjct: 244 EMVMRARTNVYHLECFACQQCNHSSYIYFYIYFC 277
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/45 (66%), Positives = 37/45 (82%), Gaps = 4/45 (8%)
Query: 109 VFCVGDRFYLCDNKILCEYDYEERQVFANIAYNPSSLAHLRRQVT 153
+FCVGDRFYLC+NKILCEYDYEER VFA++A +P L+R V+
Sbjct: 534 IFCVGDRFYLCENKILCEYDYEERLVFASMANHPM----LKRHVS 574
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/26 (92%), Positives = 25/26 (96%)
Query: 85 FCVGDRFYLCDNKILCEYDYEERQVF 110
FCVGDRFYLC+NKILCEYDYEER VF
Sbjct: 535 FCVGDRFYLCENKILCEYDYEERLVF 560
>gi|312379336|gb|EFR25645.1| hypothetical protein AND_08835 [Anopheles darlingi]
Length = 233
Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 75/80 (93%), Positives = 76/80 (95%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALDLFWHEDCLKCGCCDCRLGEVGSTLY KANLILCKRDYLRLFGTTGYCAAC KVIPAF
Sbjct: 141 ALDLFWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGTTGYCAACNKVIPAF 200
Query: 61 EMVMRAKNNVYHLECFACQQ 80
EMVMRAKNNVYHLECFA +
Sbjct: 201 EMVMRAKNNVYHLECFASRN 220
>gi|393902317|gb|EFO13539.2| hypothetical protein LOAG_14989 [Loa loa]
Length = 135
Score = 159 bits (401), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 73/100 (73%), Positives = 84/100 (84%)
Query: 11 LKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNV 70
+C CC CRLGE+GS LY K ++ILC RDYLRLFG TG CAAC K IPAFE+VMRAK+NV
Sbjct: 3 FQCACCLCRLGELGSKLYYKQSMILCARDYLRLFGLTGTCAACDKNIPAFELVMRAKDNV 62
Query: 71 YHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVF 110
YHL CFACQ CN RFC+GD+FYLC+NKILC+YD+EER F
Sbjct: 63 YHLRCFACQVCNQRFCIGDKFYLCENKILCQYDFEERMTF 102
>gi|332024559|gb|EGI64757.1| Rhombotin-1 [Acromyrmex echinatior]
Length = 99
Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 74/84 (88%), Positives = 77/84 (91%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALDL+WHEDCLKCGCCDCRLGEVGSTLY KANLILCKRDYLRLFG TG CAAC K IPAF
Sbjct: 16 ALDLYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGNTGCCAACNKQIPAF 75
Query: 61 EMVMRAKNNVYHLECFACQQCNHR 84
EMVMRA+ NVYHL+CFACQQC HR
Sbjct: 76 EMVMRARTNVYHLDCFACQQCTHR 99
>gi|322796266|gb|EFZ18842.1| hypothetical protein SINV_16506 [Solenopsis invicta]
Length = 89
Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 74/84 (88%), Positives = 77/84 (91%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALDL+WHEDCLKCGCCDCRLGEVGSTLY KANLILCKRDYLRLFG TG CAAC K IPAF
Sbjct: 6 ALDLYWHEDCLKCGCCDCRLGEVGSTLYTKANLILCKRDYLRLFGNTGCCAACNKQIPAF 65
Query: 61 EMVMRAKNNVYHLECFACQQCNHR 84
EMVMRA+ NVYHL+CFACQQC HR
Sbjct: 66 EMVMRARTNVYHLDCFACQQCTHR 89
>gi|332835820|ref|XP_003312956.1| PREDICTED: rhombotin-1 isoform 3 [Pan troglodytes]
gi|397494624|ref|XP_003818174.1| PREDICTED: rhombotin-1 isoform 2 [Pan paniscus]
gi|426367363|ref|XP_004050702.1| PREDICTED: rhombotin-1 isoform 3 [Gorilla gorilla gorilla]
gi|64654569|gb|AAH96058.1| LMO1 protein [Homo sapiens]
Length = 137
Score = 154 bits (390), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 71/84 (84%), Positives = 78/84 (92%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRLFGTTG CAAC+K+IPAF
Sbjct: 39 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAF 98
Query: 61 EMVMRAKNNVYHLECFACQQCNHR 84
EMVMRA++NVYHL+CFACQ CN R
Sbjct: 99 EMVMRARDNVYHLDCFACQLCNQR 122
>gi|402894308|ref|XP_003910308.1| PREDICTED: rhombotin-1 isoform 3 [Papio anubis]
Length = 137
Score = 154 bits (390), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 71/84 (84%), Positives = 78/84 (92%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRLFGTTG CAAC+K+IPAF
Sbjct: 39 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAF 98
Query: 61 EMVMRAKNNVYHLECFACQQCNHR 84
EMVMRA++NVYHL+CFACQ CN R
Sbjct: 99 EMVMRARDNVYHLDCFACQLCNQR 122
>gi|395743059|ref|XP_003777862.1| PREDICTED: rhombotin-1 isoform 2 [Pongo abelii]
Length = 137
Score = 154 bits (390), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 71/84 (84%), Positives = 78/84 (92%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRLFGTTG CAAC+K+IPAF
Sbjct: 39 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAF 98
Query: 61 EMVMRAKNNVYHLECFACQQCNHR 84
EMVMRA++NVYHL+CFACQ CN R
Sbjct: 99 EMVMRARDNVYHLDCFACQLCNQR 122
>gi|410908695|ref|XP_003967826.1| PREDICTED: rhombotin-1-like [Takifugu rubripes]
Length = 155
Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 83/115 (72%), Positives = 97/115 (84%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CCDC LG VGSTLY +ANLILC+RDYLRLFG TG CAAC+K+IPAF
Sbjct: 38 ALDRYWHEDCLKCACCDCCLGRVGSTLYTRANLILCRRDYLRLFGVTGNCAACSKMIPAF 97
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFCVGDR 115
EMVMRA++NVYHL+CFACQ C HRFCVGD+F+L +N ILC+ DYE + G+R
Sbjct: 98 EMVMRARDNVYHLDCFACQLCRHRFCVGDKFFLKNNMILCQLDYEGGHLSGSGER 152
>gi|312105562|ref|XP_003150530.1| hypothetical protein LOAG_14989 [Loa loa]
Length = 98
Score = 152 bits (385), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 71/96 (73%), Positives = 82/96 (85%)
Query: 11 LKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNV 70
+C CC CRLGE+GS LY K ++ILC RDYLRLFG TG CAAC K IPAFE+VMRAK+NV
Sbjct: 3 FQCACCLCRLGELGSKLYYKQSMILCARDYLRLFGLTGTCAACDKNIPAFELVMRAKDNV 62
Query: 71 YHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
YHL CFACQ CN RFC+GD+FYLC+NKILC+YD+EE
Sbjct: 63 YHLRCFACQVCNQRFCIGDKFYLCENKILCQYDFEE 98
>gi|345783372|ref|XP_851277.2| PREDICTED: uncharacterized protein LOC609006 [Canis lupus
familiaris]
Length = 756
Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats.
Identities = 63/106 (59%), Positives = 73/106 (68%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WHEDCL C C CRLGEVG LY K LC+RDYLRLFG G CA+C K I A+
Sbjct: 643 AIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAY 702
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE D E
Sbjct: 703 EMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYE 748
>gi|351710230|gb|EHB13149.1| LIM domain only protein 3 [Heterocephalus glaber]
Length = 163
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 75/124 (60%), Positives = 88/124 (70%), Gaps = 18/124 (14%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLY-----QKANLILCKR-------------DYLR 42
ALD +WHEDCLKC CCDCRLGEVGSTL + L++ R +
Sbjct: 28 ALDKYWHEDCLKCACCDCRLGEVGSTLLACMQTRIQQLVILPRMLKLLVFGINQYTSFCL 87
Query: 43 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEY 102
LFG TG CAAC+K+IPAFEMVMRAK+NVYHL+CFACQ CN RFCVGD+F+L +N ILC+
Sbjct: 88 LFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQT 147
Query: 103 DYEE 106
DYEE
Sbjct: 148 DYEE 151
>gi|311248009|ref|XP_003122931.1| PREDICTED: hypothetical protein LOC100512825 [Sus scrofa]
Length = 476
Score = 145 bits (367), Expect = 4e-33, Method: Composition-based stats.
Identities = 63/106 (59%), Positives = 73/106 (68%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WHEDCL C C CRLGEVG LY K LC+RDYLRLFG G CA+C K I A+
Sbjct: 363 AIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAY 422
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE D E
Sbjct: 423 EMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYE 468
>gi|156375130|ref|XP_001629935.1| predicted protein [Nematostella vectensis]
gi|156216946|gb|EDO37872.1| predicted protein [Nematostella vectensis]
Length = 125
Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 67/106 (63%), Positives = 80/106 (75%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD FWHE+CLKC C L E+G Y + +LILCKRDY+R+FGTTG C+ C K IP
Sbjct: 17 ALDQFWHEECLKCSYCCGMLSEMGPKFYFRGDLILCKRDYIRIFGTTGICSFCFKTIPPL 76
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EMVMRA+ +VYHL+CFACQ C HRFCVGD+FYL N +LCE DY +
Sbjct: 77 EMVMRARQHVYHLDCFACQVCRHRFCVGDKFYLHQNTVLCEDDYGD 122
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 47/122 (38%), Gaps = 41/122 (33%)
Query: 50 CAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFC-VGDRFYLCDNKILCEYDYEE-- 106
CA C I + + ++RA + +H EC C C +G +FY + ILC+ DY
Sbjct: 2 CAQCGNGIQS-QFLLRALDQFWHEECLKCSYCCGMLSEMGPKFYFRGDLILCKRDYIRIF 60
Query: 107 -------------------------------------RQVFCVGDRFYLCDNKILCEYDY 129
R FCVGD+FYL N +LCE DY
Sbjct: 61 GTTGICSFCFKTIPPLEMVMRARQHVYHLDCFACQVCRHRFCVGDKFYLHQNTVLCEDDY 120
Query: 130 EE 131
+
Sbjct: 121 GD 122
>gi|321454866|gb|EFX66019.1| hypothetical protein DAPPUDRAFT_332621 [Daphnia pulex]
Length = 114
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 66/78 (84%), Positives = 72/78 (92%)
Query: 32 NLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRF 91
+LILCKRDYLR+FGT+G CAAC K IPAFEMVMRAK+NVYHL+CFACQQC+ RFCVGDRF
Sbjct: 1 HLILCKRDYLRMFGTSGNCAACCKAIPAFEMVMRAKSNVYHLDCFACQQCHQRFCVGDRF 60
Query: 92 YLCDNKILCEYDYEERQV 109
YL DNKILCEYDYEER V
Sbjct: 61 YLNDNKILCEYDYEERLV 78
>gi|326670376|ref|XP_002663297.2| PREDICTED: LIM domain transcription factor LMO4.2 [Danio rerio]
Length = 195
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 64/149 (42%), Positives = 88/149 (59%), Gaps = 4/149 (2%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+++ +WH CLKC CC +LGE+GST Y K+ +ILC+ DY+RLFG TG C+AC + IPA
Sbjct: 31 SMERYWHSRCLKCSCCQAQLGEIGSTCYSKSGMILCRTDYIRLFGHTGACSACGQSIPAS 90
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFCVGDRFYLCD 120
EMVMRA+ NVYHL+CF+C C ++ GDRF+ + I CE+D + +L
Sbjct: 91 EMVMRAQGNVYHLKCFSCATCRNQLVPGDRFHYVNGTIFCEHDRPGAALL----NTHLQS 146
Query: 121 NKILCEYDYEERQVFANIAYNPSSLAHLR 149
N +L + N Y P H R
Sbjct: 147 NPVLPDQKVGTASRPVNYLYPPQPGLHGR 175
>gi|410046368|ref|XP_003952176.1| PREDICTED: uncharacterized protein LOC465319 [Pan troglodytes]
Length = 167
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 71/128 (55%), Positives = 86/128 (67%), Gaps = 22/128 (17%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGE----------------VGSTLYQKANLILCKRDYLR-- 42
ALD +WHEDCLKC CCDCRLGE +G + ++ L D+ +
Sbjct: 28 ALDKYWHEDCLKCACCDCRLGEHLKRCGSIYIHAAHTEIGICVTLESPLPFVITDFSQQI 87
Query: 43 ----LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKI 98
LFG TG CAAC+K+IPAFEMVMRAK+NVYHL+CFACQ CN RFCVGD+F+L +N I
Sbjct: 88 TIAWLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMI 147
Query: 99 LCEYDYEE 106
LC+ DYEE
Sbjct: 148 LCQTDYEE 155
>gi|256088687|ref|XP_002580458.1| rhombotin [Schistosoma mansoni]
gi|350644447|emb|CCD60816.1| rhombotin, putative [Schistosoma mansoni]
Length = 287
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 61/102 (59%), Positives = 76/102 (74%)
Query: 5 FWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVM 64
+WHEDCL+C CCD RL E+ Y KA + LC+RDYLRL+G TG C+ C K + ++E VM
Sbjct: 45 YWHEDCLRCICCDARLAELDKIFYIKARMSLCRRDYLRLYGKTGECSICQKQVQSYEFVM 104
Query: 65 RAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
+ KN+VYHL CF CQ C RFC+GDRFYL +N ILCE+DY E
Sbjct: 105 KIKNSVYHLSCFCCQHCQMRFCIGDRFYLHENIILCEHDYME 146
>gi|397491241|ref|XP_003816581.1| PREDICTED: LIM domain only protein 3-like [Pan paniscus]
Length = 167
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 71/128 (55%), Positives = 86/128 (67%), Gaps = 22/128 (17%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGE----------------VGSTLYQKANLILCKRDYLR-- 42
ALD +WHEDCLKC CCDCRLGE +G + ++ L D+ +
Sbjct: 28 ALDKYWHEDCLKCACCDCRLGEHLKRCGSIYIHAAHTEIGICVTLESPLPFVIIDFSQQI 87
Query: 43 ----LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKI 98
LFG TG CAAC+K+IPAFEMVMRAK+NVYHL+CFACQ CN RFCVGD+F+L +N I
Sbjct: 88 TIAWLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMI 147
Query: 99 LCEYDYEE 106
LC+ DYEE
Sbjct: 148 LCQTDYEE 155
>gi|426225424|ref|XP_004006866.1| PREDICTED: LIM domain only protein 3 [Ovis aries]
Length = 165
Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 71/126 (56%), Positives = 85/126 (67%), Gaps = 20/126 (15%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGE-----------------VGSTLYQKANLILC---KRDY 40
ALD +WHEDCLKC CCDCRLGE + + L L++ +
Sbjct: 28 ALDKYWHEDCLKCACCDCRLGEHLKRCRVRMHAAHTDVRIYTALECAPTLVIIDFYQITI 87
Query: 41 LRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILC 100
L LFG TG CAAC+K+IPAFEMVMRAK+NVYHL+CFACQ CN RFCVGD+F+L +N ILC
Sbjct: 88 LWLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILC 147
Query: 101 EYDYEE 106
+ DYEE
Sbjct: 148 QTDYEE 153
>gi|441646887|ref|XP_003254671.2| PREDICTED: uncharacterized protein LOC100595328 [Nomascus
leucogenys]
Length = 382
Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 63/106 (59%), Positives = 73/106 (68%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WHEDCL C C CRLGEVG LY K LC+RDYLRLFG G CA+C K I A+
Sbjct: 269 AIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAY 328
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE D E
Sbjct: 329 EMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYE 374
>gi|344280810|ref|XP_003412175.1| PREDICTED: hypothetical protein LOC100673779 [Loxodonta africana]
Length = 339
Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 63/106 (59%), Positives = 73/106 (68%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WHEDCL C C CRLGEVG LY K LC+RDYLRLFG G CA+C K I A+
Sbjct: 226 AIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAY 285
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE D E
Sbjct: 286 EMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYE 331
>gi|348556199|ref|XP_003463910.1| PREDICTED: hypothetical protein LOC100733380 [Cavia porcellus]
Length = 381
Score = 135 bits (341), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 63/106 (59%), Positives = 73/106 (68%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WHEDCL C C CRLGEVG LY K LC+RDYLRLFG G CA+C K I A+
Sbjct: 268 AIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAY 327
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE D E
Sbjct: 328 EMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYE 373
>gi|441669898|ref|XP_004092149.1| PREDICTED: LIM domain only protein 3-like [Nomascus leucogenys]
Length = 167
Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 71/128 (55%), Positives = 85/128 (66%), Gaps = 22/128 (17%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGE----------------VGSTLYQKANLILCKRDYLR-- 42
ALD +WHEDCLKC CCDCRLGE +G + + L D+ +
Sbjct: 28 ALDKYWHEDCLKCACCDCRLGEHLKRCGSIYIHAAHTEIGIYVTLEWPLPFIIIDFSQQI 87
Query: 43 ----LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKI 98
LFG TG CAAC+K+IPAFEMVMRAK+NVYHL+CFACQ CN RFCVGD+F+L +N I
Sbjct: 88 TIAWLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMI 147
Query: 99 LCEYDYEE 106
LC+ DYEE
Sbjct: 148 LCQTDYEE 155
>gi|395816191|ref|XP_003781591.1| PREDICTED: uncharacterized protein LOC100957884 [Otolemur
garnettii]
Length = 361
Score = 135 bits (340), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 63/106 (59%), Positives = 73/106 (68%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WHEDCL C C CRLGEVG LY K LC+RDYLRLFG G CA+C K I A+
Sbjct: 248 AIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAY 307
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE D E
Sbjct: 308 EMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYE 353
>gi|343790987|ref|NP_001230542.1| LIM domain only protein 3 isoform 4 [Homo sapiens]
gi|426371886|ref|XP_004052871.1| PREDICTED: LIM domain only protein 3-like [Gorilla gorilla gorilla]
gi|194378890|dbj|BAG57996.1| unnamed protein product [Homo sapiens]
Length = 167
Score = 135 bits (340), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 71/128 (55%), Positives = 85/128 (66%), Gaps = 22/128 (17%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGE----------------VGSTLYQKANLILCKRDYLR-- 42
ALD +WHEDCLKC CCDCRLGE +G + + L D+ +
Sbjct: 28 ALDKYWHEDCLKCACCDCRLGEHLKRCGSIYIHAAHTEIGICVTLEWPLPFVIIDFSQQI 87
Query: 43 ----LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKI 98
LFG TG CAAC+K+IPAFEMVMRAK+NVYHL+CFACQ CN RFCVGD+F+L +N I
Sbjct: 88 TIAWLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMI 147
Query: 99 LCEYDYEE 106
LC+ DYEE
Sbjct: 148 LCQTDYEE 155
>gi|426367960|ref|XP_004050987.1| PREDICTED: uncharacterized protein LOC101139857 [Gorilla gorilla
gorilla]
Length = 362
Score = 135 bits (339), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 63/106 (59%), Positives = 73/106 (68%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WHEDCL C C CRLGEVG LY K LC+RDYLRLFG G CA+C K I A+
Sbjct: 249 AIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAY 308
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE D E
Sbjct: 309 EMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYE 354
>gi|410920794|ref|XP_003973868.1| PREDICTED: LIM domain transcription factor LMO4-like [Takifugu
rubripes]
Length = 271
Score = 135 bits (339), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 58/142 (40%), Positives = 86/142 (60%), Gaps = 2/142 (1%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
++ +WH CLKC CC +LGE+G++ Y K+ +ILC+ DY+RLFG +G C+AC + IPA
Sbjct: 38 TMESYWHSRCLKCSCCQAQLGEIGTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPAS 97
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFCVGDRFYLCD 120
E+VMRA+ NVYHL+CF C C +R GDRF+ + + CE+D G L
Sbjct: 98 ELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYVNGSLFCEHD--RPTALINGHLSSLQT 155
Query: 121 NKILCEYDYEERQVFANIAYNP 142
N +L + + +++ NP
Sbjct: 156 NPLLSDQKLAKERLYQGWTGNP 177
>gi|345305572|ref|XP_001507645.2| PREDICTED: hypothetical protein LOC100076235 [Ornithorhynchus
anatinus]
Length = 397
Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 63/106 (59%), Positives = 73/106 (68%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WHEDCL C C CRLGEVG LY K LC+RDYLRLFG G CA+C K I A+
Sbjct: 284 AIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAY 343
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE D E
Sbjct: 344 EMTMRVKDKVYHLECFKCAVCQKHFCVGDRYLLINSDIVCEQDIYE 389
>gi|215272415|ref|NP_032531.2| rhombotin-2 isoform 1 [Mus musculus]
Length = 228
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/106 (59%), Positives = 73/106 (68%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WHEDCL C C CRLGEVG LY K LC+RDYLRLFG G CA+C K I A+
Sbjct: 115 AIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAY 174
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE D E
Sbjct: 175 EMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYE 220
>gi|215272418|ref|NP_001135807.1| rhombotin-2 isoform 2 [Mus musculus]
gi|348605100|ref|NP_001032435.2| rhombotin-2 isoform 1 [Rattus norvegicus]
Length = 220
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/106 (59%), Positives = 73/106 (68%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WHEDCL C C CRLGEVG LY K LC+RDYLRLFG G CA+C K I A+
Sbjct: 107 AIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAY 166
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE D E
Sbjct: 167 EMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYE 212
>gi|403255494|ref|XP_003920463.1| PREDICTED: rhombotin-2, partial [Saimiri boliviensis boliviensis]
Length = 227
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/106 (59%), Positives = 73/106 (68%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WHEDCL C C CRLGEVG LY K LC+RDYLRLFG G CA+C K I A+
Sbjct: 114 AIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAY 173
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE D E
Sbjct: 174 EMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYE 219
>gi|351705454|gb|EHB08373.1| LIM domain transcription factor LMO4 [Heterocephalus glaber]
Length = 214
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 58/138 (42%), Positives = 87/138 (63%), Gaps = 2/138 (1%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WH CLKC CC +LG++G++ Y K+ +ILC+ DY+RLFG +G C+AC + IPA
Sbjct: 69 AMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPAS 128
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFCVGDRFYLCD 120
E+VMRA+ NVYHL+CF C C +R GDRF+ + + CE+D + G L
Sbjct: 129 ELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDRPTALIN--GHLNSLQS 186
Query: 121 NKILCEYDYEERQVFANI 138
N +L + +Q+ ++
Sbjct: 187 NPLLPDQKVNTQQLLISL 204
>gi|297688971|ref|XP_002821941.1| PREDICTED: rhombotin-2 [Pongo abelii]
Length = 227
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/106 (59%), Positives = 73/106 (68%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WHEDCL C C CRLGEVG LY K LC+RDYLRLFG G CA+C K I A+
Sbjct: 114 AIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAY 173
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE D E
Sbjct: 174 EMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYE 219
>gi|334321736|ref|XP_001364235.2| PREDICTED: LIM domain transcription factor LMO4-like [Monodelphis
domestica]
Length = 225
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 58/135 (42%), Positives = 84/135 (62%), Gaps = 2/135 (1%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WH CLKC CC +LG++G++ Y K+ +ILC+ DY+RLFG +G C+AC + IPA
Sbjct: 38 AMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPAS 97
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFCVGDRFYLCD 120
E+VMRA+ NVYHL+CF C C +R GDRF+ + + CE+D G L
Sbjct: 98 ELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDRPT--ALINGHLNSLQS 155
Query: 121 NKILCEYDYEERQVF 135
N +L + +Q+
Sbjct: 156 NPLLSDQKVNTQQLL 170
>gi|58332172|ref|NP_001011238.1| rhombotin-2 [Xenopus (Silurana) tropicalis]
gi|82195676|sp|Q5M8V8.1|RBTN2_XENTR RecName: Full=Rhombotin-2; AltName: Full=LIM domain only protein 2;
Short=LMO-2
gi|56556544|gb|AAH87809.1| LIM domain only 2 (rhombotin-like 1) [Xenopus (Silurana)
tropicalis]
Length = 158
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 64/106 (60%), Positives = 73/106 (68%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WHEDCL C C CRLGEVG LY K LC+RDYLRLFG G CA+C K I AF
Sbjct: 45 AIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAF 104
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE D E
Sbjct: 105 EMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYE 150
>gi|214832074|ref|NP_005565.2| rhombotin-2 isoform 1 [Homo sapiens]
gi|119588588|gb|EAW68182.1| LIM domain only 2 (rhombotin-like 1), isoform CRA_b [Homo sapiens]
Length = 227
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 63/106 (59%), Positives = 73/106 (68%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WHEDCL C C CRLGEVG LY K LC+RDYLRLFG G CA+C K I A+
Sbjct: 114 AIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAY 173
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE D E
Sbjct: 174 EMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYE 219
>gi|432107070|gb|ELK32502.1| LIM domain transcription factor LMO4 [Myotis davidii]
Length = 198
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 93/158 (58%), Gaps = 7/158 (4%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WH CLKC CC +LG++G++ Y K+ +ILC+ DY+RLFG +G C+AC + IPA
Sbjct: 38 AMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPAS 97
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE----ERQVFCVGDRF 116
E+VMRA+ NVYHL+CF C C +R GDRF+ + + CE+D + +
Sbjct: 98 ELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDRPTALINGHLNSLQSNP 157
Query: 117 YLCDNKI---LCEYDYEERQVFANIAYNPSSLAHLRRQ 151
L D K+ + E EER ++ A SL R+
Sbjct: 158 LLPDQKVHQSVVEMRGEERPSDSDFAQTKLSLVSKDRE 195
>gi|410044983|ref|XP_001145605.2| PREDICTED: rhombotin-2 isoform 5 [Pan troglodytes]
Length = 226
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 63/106 (59%), Positives = 73/106 (68%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WHEDCL C C CRLGEVG LY K LC+RDYLRLFG G CA+C K I A+
Sbjct: 113 AIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAY 172
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE D E
Sbjct: 173 EMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYE 218
>gi|402893865|ref|XP_003910103.1| PREDICTED: rhombotin-2 [Papio anubis]
Length = 222
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 63/106 (59%), Positives = 73/106 (68%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WHEDCL C C CRLGEVG LY K LC+RDYLRLFG G CA+C K I A+
Sbjct: 109 AIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAY 168
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE D E
Sbjct: 169 EMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYE 214
>gi|388454755|ref|NP_001253136.1| rhombotin-2 [Macaca mulatta]
gi|387539650|gb|AFJ70452.1| rhombotin-2 isoform 1 [Macaca mulatta]
Length = 222
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 63/106 (59%), Positives = 73/106 (68%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WHEDCL C C CRLGEVG LY K LC+RDYLRLFG G CA+C K I A+
Sbjct: 109 AIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAY 168
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE D E
Sbjct: 169 EMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYE 214
>gi|29469078|ref|NP_817093.1| LIM domain only 4a [Danio rerio]
gi|19879278|gb|AAK26166.1| LIM only 4 protein [Danio rerio]
gi|28277424|gb|AAH45835.1| LIM domain only 4 [Danio rerio]
gi|182890324|gb|AAI64026.1| Lmo4 protein [Danio rerio]
Length = 167
Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 56/103 (54%), Positives = 74/103 (71%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
++D +WH CLKC CC +LGE+GST + K +ILC+ DY+RLFG +G C+AC + IPA
Sbjct: 39 SMDRYWHTRCLKCSCCQAQLGEIGSTCFSKGGMILCRNDYIRLFGHSGACSACGQSIPAS 98
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 103
EMVMRA+ NVYHL+CF C C +R GDRF+ + I CE+D
Sbjct: 99 EMVMRAQGNVYHLKCFTCATCRNRLVPGDRFHYVNGTIFCEHD 141
>gi|351708418|gb|EHB11337.1| Rhombotin-2 [Heterocephalus glaber]
Length = 227
Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 63/106 (59%), Positives = 73/106 (68%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WHEDCL C C CRLGEVG LY K LC+RDYLRLFG G CA+C K I A+
Sbjct: 114 AIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAY 173
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE D E
Sbjct: 174 EMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYE 219
>gi|301764242|ref|XP_002917543.1| PREDICTED: rhombotin-2-like, partial [Ailuropoda melanoleuca]
Length = 184
Score = 132 bits (332), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 63/106 (59%), Positives = 73/106 (68%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WHEDCL C C CRLGEVG LY K LC+RDYLRLFG G CA+C K I A+
Sbjct: 71 AIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAY 130
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE D E
Sbjct: 131 EMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYE 176
>gi|213514790|ref|NP_001133458.1| LIM domain transcription factor LMO4.1 [Salmo salar]
gi|209154084|gb|ACI33274.1| LIM domain transcription factor LMO4.1 [Salmo salar]
Length = 168
Score = 132 bits (332), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 56/103 (54%), Positives = 74/103 (71%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+++ +WH CLKC CC +LGE+G+T Y K +ILCK DY+RLFG +G C+AC + IPA
Sbjct: 40 SMERYWHTRCLKCSCCHAQLGEIGTTCYSKGGMILCKNDYIRLFGHSGACSACGQSIPAS 99
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 103
EMVMRA+ NVYHL+CF C C +R GDRF+ + I CE+D
Sbjct: 100 EMVMRAQGNVYHLKCFTCATCRNRLVPGDRFHYVNGTIFCEHD 142
>gi|348505324|ref|XP_003440211.1| PREDICTED: LIM domain transcription factor LMO4.1-like [Oreochromis
niloticus]
Length = 198
Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 64/154 (41%), Positives = 88/154 (57%), Gaps = 1/154 (0%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+++ +WH CLKC CC +LGE ST Y K +ILCK DY+RLFG +G C+AC + IPA
Sbjct: 40 SMERYWHTRCLKCSCCHAQLGEYSSTCYSKGGMILCKNDYIRLFGHSGACSACGQSIPAS 99
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFCVGDRFYLCD 120
EMVMRA+ +VYHL+CF C C +R GDRF+ + I CE+D + G L
Sbjct: 100 EMVMRAQGSVYHLKCFTCATCRNRLVPGDRFHYVNGTIFCEHDRPGGGLL-GGHSTPLQG 158
Query: 121 NKILCEYDYEERQVFANIAYNPSSLAHLRRQVTL 154
N I+ + + ++ A S H + Q T
Sbjct: 159 NNIMSDQKFLAPKLITWHATFSSKYGHFQLQKTF 192
>gi|224050494|ref|XP_002188677.1| PREDICTED: rhombotin-2 [Taeniopygia guttata]
Length = 158
Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 63/106 (59%), Positives = 73/106 (68%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WHEDCL C C CRLGEVG LY K LC+RDYLRLFG G CA+C K I A+
Sbjct: 45 AIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCEKRIRAY 104
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE D E
Sbjct: 105 EMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYE 150
>gi|327280945|ref|XP_003225211.1| PREDICTED: rhombotin-2-like [Anolis carolinensis]
Length = 158
Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 63/106 (59%), Positives = 73/106 (68%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WHEDCL C C CRLGEVG LY K LC+RDYLRLFG G CA+C K I A+
Sbjct: 45 AIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAY 104
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE D E
Sbjct: 105 EMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYE 150
>gi|52345752|ref|NP_001004922.1| LIM domain transcription factor LMO4.2 [Xenopus (Silurana)
tropicalis]
gi|82183496|sp|Q6DJ06.1|LMO42_XENTR RecName: Full=LIM domain transcription factor LMO4.2; AltName:
Full=LIM domain only protein 4.2; Short=LMO-4.2
gi|49522594|gb|AAH75379.1| MGC89099 protein [Xenopus (Silurana) tropicalis]
gi|89268694|emb|CAJ82708.1| LIM domain only 4 [Xenopus (Silurana) tropicalis]
Length = 165
Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 54/103 (52%), Positives = 75/103 (72%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WH CLKC CC +LGE+G++ Y K+ +ILC+ DY+RLFG +G C+AC + IPA
Sbjct: 38 AMDSYWHSRCLKCSCCQAQLGEIGTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPAS 97
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 103
E+VMRA+ NVYHL+CF C C +R GDRF+ + + CE+D
Sbjct: 98 ELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 140
>gi|284795255|ref|NP_001087890.2| LIM domain only 4, gene 1 [Xenopus laevis]
Length = 165
Score = 132 bits (331), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 54/103 (52%), Positives = 75/103 (72%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WH CLKC CC +LGE+G++ Y K+ +ILC+ DY+RLFG +G C+AC + IPA
Sbjct: 38 AMDSYWHSRCLKCSCCQAQLGEIGTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPAS 97
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 103
E+VMRA+ NVYHL+CF C C +R GDRF+ + + CE+D
Sbjct: 98 ELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 140
>gi|115496606|ref|NP_001069820.1| rhombotin-2 [Bos taurus]
gi|119361443|sp|Q1LZ94.1|RBTN2_BOVIN RecName: Full=Rhombotin-2; AltName: Full=LIM domain only protein 2;
Short=LMO-2
gi|94534785|gb|AAI16135.1| LIM domain only 2 (rhombotin-like 1) [Bos taurus]
gi|296479728|tpg|DAA21843.1| TPA: rhombotin-2 [Bos taurus]
Length = 158
Score = 132 bits (331), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 63/106 (59%), Positives = 73/106 (68%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WHEDCL C C CRLGEVG LY K LC+RDYLRLFG G CA+C K I A+
Sbjct: 45 AIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAY 104
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE D E
Sbjct: 105 EMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYE 150
>gi|45383592|ref|NP_989602.1| rhombotin-2 [Gallus gallus]
gi|214832121|ref|NP_001135787.1| rhombotin-2 isoform 2 [Homo sapiens]
gi|214832219|ref|NP_001135788.1| rhombotin-2 isoform 2 [Homo sapiens]
gi|132533|sp|P25791.1|RBTN2_HUMAN RecName: Full=Rhombotin-2; AltName: Full=Cysteine-rich protein
TTG-2; AltName: Full=LIM domain only protein 2;
Short=LMO-2; AltName: Full=T-cell translocation protein
2
gi|18656901|gb|AAL78036.1|AF468789_1 LIM domain-containing transcription factor [Gallus gallus]
gi|37481|emb|CAA43430.1| TTG-2a/RBTN-2a [Homo sapiens]
gi|21706499|gb|AAH34041.1| LMO2 protein [Homo sapiens]
gi|23272668|gb|AAH35607.1| LMO2 protein [Homo sapiens]
gi|27502791|gb|AAH42426.1| LMO2 protein [Homo sapiens]
gi|90085449|dbj|BAE91465.1| unnamed protein product [Macaca fascicularis]
gi|123983036|gb|ABM83259.1| LIM domain only 2 (rhombotin-like 1) [synthetic construct]
gi|123997725|gb|ABM86464.1| LIM domain only 2 (rhombotin-like 1) [synthetic construct]
gi|208966668|dbj|BAG73348.1| LIM domain only 2 [synthetic construct]
gi|380783195|gb|AFE63473.1| rhombotin-2 isoform 1 [Macaca mulatta]
gi|431915694|gb|ELK16027.1| Rhombotin-2 [Pteropus alecto]
Length = 158
Score = 132 bits (331), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 63/106 (59%), Positives = 73/106 (68%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WHEDCL C C CRLGEVG LY K LC+RDYLRLFG G CA+C K I A+
Sbjct: 45 AIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAY 104
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE D E
Sbjct: 105 EMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYE 150
>gi|417396903|gb|JAA45485.1| Putative lim domain transcription factor lmo4 [Desmodus rotundus]
Length = 197
Score = 132 bits (331), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 53/103 (51%), Positives = 75/103 (72%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WH CLKC CC +LG++G++ Y K+ +ILC+ DY+RLFG +G C+AC + IPA
Sbjct: 38 AMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPAS 97
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 103
E+VMRA+ NVYHL+CF C C +R GDRF+ + + CE+D
Sbjct: 98 ELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 140
>gi|443704461|gb|ELU01523.1| hypothetical protein CAPTEDRAFT_46615, partial [Capitella teleta]
Length = 122
Score = 132 bits (331), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 54/105 (51%), Positives = 78/105 (74%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WH CLKC CC +LGE+G++ + K+ +ILCKRDY+RLFG+TG CAAC++ IPA
Sbjct: 18 AMDRYWHTGCLKCSCCQAQLGELGTSCFTKSGMILCKRDYIRLFGSTGTCAACSQAIPAS 77
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
E VM+A+ NVYH+ CF C C+ R GDR+ + + ++CE+D+
Sbjct: 78 EFVMKAQGNVYHVHCFTCVTCHSRLVPGDRYGIINGSLICEHDFP 122
>gi|215272297|ref|NP_001135809.1| rhombotin-2 isoform 3 [Mus musculus]
gi|215272420|ref|NP_001135808.1| rhombotin-2 isoform 3 [Mus musculus]
gi|348605102|ref|NP_001231708.1| rhombotin-2 isoform 2 [Rattus norvegicus]
gi|348605104|ref|NP_001231709.1| rhombotin-2 isoform 2 [Rattus norvegicus]
gi|348605106|ref|NP_001231710.1| rhombotin-2 isoform 2 [Rattus norvegicus]
gi|132534|sp|P25801.1|RBTN2_MOUSE RecName: Full=Rhombotin-2; AltName: Full=Cysteine-rich protein
TTG-2; AltName: Full=LIM domain only protein 2;
Short=LMO-2; AltName: Full=T-cell translocation protein
2
gi|200749|gb|AAA40054.1| rhom-2 [Mus musculus]
gi|12850763|dbj|BAB28844.1| unnamed protein product [Mus musculus]
gi|34785560|gb|AAH57880.1| LIM domain only 2 [Mus musculus]
gi|76779330|gb|AAI05773.1| LIM domain only 2 [Rattus norvegicus]
gi|149022788|gb|EDL79682.1| LIM domain only 2 [Rattus norvegicus]
Length = 158
Score = 132 bits (331), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 63/106 (59%), Positives = 73/106 (68%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WHEDCL C C CRLGEVG LY K LC+RDYLRLFG G CA+C K I A+
Sbjct: 45 AIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAY 104
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE D E
Sbjct: 105 EMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYE 150
>gi|327270759|ref|XP_003220156.1| PREDICTED: LIM domain transcription factor LMO4-like [Anolis
carolinensis]
gi|387019075|gb|AFJ51655.1| LIM domain transcription factor LMO4-like [Crotalus adamanteus]
Length = 165
Score = 132 bits (331), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 54/103 (52%), Positives = 75/103 (72%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WH CLKC CC +LGE+G++ Y K+ +ILC+ DY+RLFG +G C+AC + IPA
Sbjct: 38 AMDSYWHSRCLKCSCCQAQLGEIGTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPAS 97
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 103
E+VMRA+ NVYHL+CF C C +R GDRF+ + + CE+D
Sbjct: 98 ELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 140
>gi|348586684|ref|XP_003479098.1| PREDICTED: LIM domain transcription factor LMO4-like [Cavia
porcellus]
Length = 236
Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 53/103 (51%), Positives = 75/103 (72%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WH CLKC CC +LG++G++ Y K+ +ILC+ DY+RLFG +G C+AC + IPA
Sbjct: 38 AMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPAS 97
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 103
E+VMRA+ NVYHL+CF C C +R GDRF+ + + CE+D
Sbjct: 98 ELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 140
>gi|348535208|ref|XP_003455093.1| PREDICTED: LIM domain transcription factor LMO4-B-like [Oreochromis
niloticus]
Length = 261
Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 54/103 (52%), Positives = 76/103 (73%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+++ +WH CLKC CC +LG++G+T Y K +ILC+ DY+RLFG +G C+AC++ IPA
Sbjct: 31 SMERYWHTRCLKCSCCQAQLGDIGTTCYSKGGMILCRSDYIRLFGHSGACSACSQSIPAN 90
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 103
EMVMRA+ NVYHL+CF+C C +R GDRF+ + I CE+D
Sbjct: 91 EMVMRAQGNVYHLKCFSCATCRNRLMPGDRFHYINGTIFCEHD 133
>gi|431897053|gb|ELK06317.1| LIM domain transcription factor LMO4 [Pteropus alecto]
Length = 214
Score = 131 bits (330), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 53/103 (51%), Positives = 75/103 (72%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WH CLKC CC +LG++G++ Y K+ +ILC+ DY+RLFG +G C+AC + IPA
Sbjct: 38 AMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPAS 97
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 103
E+VMRA+ NVYHL+CF C C +R GDRF+ + + CE+D
Sbjct: 98 ELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 140
>gi|326920334|ref|XP_003206429.1| PREDICTED: rhombotin-2-like [Meleagris gallopavo]
Length = 183
Score = 131 bits (330), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 63/106 (59%), Positives = 73/106 (68%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WHEDCL C C CRLGEVG LY K LC+RDYLRLFG G CA+C K I A+
Sbjct: 70 AIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAY 129
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE D E
Sbjct: 130 EMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYE 175
>gi|148695762|gb|EDL27709.1| LIM domain only 2 [Mus musculus]
Length = 155
Score = 131 bits (330), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 63/106 (59%), Positives = 73/106 (68%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WHEDCL C C CRLGEVG LY K LC+RDYLRLFG G CA+C K I A+
Sbjct: 42 AIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAY 101
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE D E
Sbjct: 102 EMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYE 147
>gi|402589676|gb|EJW83607.1| beadex/dLMO protein [Wuchereria bancrofti]
Length = 101
Score = 131 bits (330), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 60/78 (76%), Positives = 68/78 (87%)
Query: 33 LILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFY 92
+ILC RDYLRLFG TG CAAC K IPAFE+VMRAK+NVYHL CFACQ CN RFC+GD+FY
Sbjct: 1 MILCARDYLRLFGLTGTCAACDKNIPAFELVMRAKDNVYHLRCFACQVCNQRFCIGDKFY 60
Query: 93 LCDNKILCEYDYEERQVF 110
LC+NKILC+YD+EER F
Sbjct: 61 LCENKILCQYDFEERVTF 78
>gi|49900550|gb|AAH76053.1| LIM domain only 4, like [Danio rerio]
Length = 165
Score = 131 bits (330), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 54/103 (52%), Positives = 75/103 (72%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WH CLKC CC +LGE+G++ Y K+ +ILC+ DY+RLFG +G C+AC + IPA
Sbjct: 38 AMDSYWHSRCLKCSCCQAQLGEIGTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPAS 97
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 103
E+VMRA+ NVYHL+CF C C +R GDRF+ + + CE+D
Sbjct: 98 ELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 140
>gi|432113866|gb|ELK35978.1| Rhombotin-2 [Myotis davidii]
Length = 156
Score = 131 bits (330), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 63/106 (59%), Positives = 73/106 (68%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WHEDCL C C CRLGEVG LY K LC+RDYLRLFG G CA+C K I A+
Sbjct: 43 AIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAY 102
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE D E
Sbjct: 103 EMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYE 148
>gi|417408110|gb|JAA50627.1| Putative transcription factor, partial [Desmodus rotundus]
Length = 148
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/106 (59%), Positives = 73/106 (68%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WHEDCL C C CRLGEVG LY K LC+RDYLRLFG G CA+C K I A+
Sbjct: 35 AIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAY 94
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE D E
Sbjct: 95 EMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYE 140
>gi|426245282|ref|XP_004016442.1| PREDICTED: rhombotin-2 [Ovis aries]
Length = 151
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/106 (59%), Positives = 73/106 (68%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WHEDCL C C CRLGEVG LY K LC+RDYLRLFG G CA+C K I A+
Sbjct: 38 AIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAY 97
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE D E
Sbjct: 98 EMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYE 143
>gi|7963882|gb|AAF71368.1|AF258348_1 neuronal specific transcription factor DAT1 [Homo sapiens]
Length = 125
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/106 (61%), Positives = 75/106 (70%), Gaps = 20/106 (18%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDC KC CCDCR + RLFG TG CAAC+K+IPAF
Sbjct: 28 ALDKYWHEDCPKCACCDCR--------------------WERLFGVTGNCAACSKLIPAF 67
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EMVMRAK+NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ DYEE
Sbjct: 68 EMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEE 113
>gi|194217809|ref|XP_001492641.2| PREDICTED: rhombotin-2-like [Equus caballus]
gi|397520671|ref|XP_003830436.1| PREDICTED: rhombotin-2 [Pan paniscus]
gi|410973530|ref|XP_003993202.1| PREDICTED: rhombotin-2 [Felis catus]
gi|9799068|gb|AAF98804.1| LMO2b splice variant [Homo sapiens]
gi|49256403|gb|AAH73973.1| LMO2 protein [Homo sapiens]
gi|119588587|gb|EAW68181.1| LIM domain only 2 (rhombotin-like 1), isoform CRA_a [Homo sapiens]
Length = 151
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/106 (59%), Positives = 73/106 (68%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WHEDCL C C CRLGEVG LY K LC+RDYLRLFG G CA+C K I A+
Sbjct: 38 AIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAY 97
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE D E
Sbjct: 98 EMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYE 143
>gi|440910064|gb|ELR59896.1| Rhombotin-2, partial [Bos grunniens mutus]
Length = 147
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/106 (59%), Positives = 73/106 (68%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WHEDCL C C CRLGEVG LY K LC+RDYLRLFG G CA+C K I A+
Sbjct: 34 AIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAY 93
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE D E
Sbjct: 94 EMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYE 139
>gi|281350950|gb|EFB26534.1| hypothetical protein PANDA_005865 [Ailuropoda melanoleuca]
gi|355566620|gb|EHH22999.1| LIM domain only protein 2, partial [Macaca mulatta]
gi|355752225|gb|EHH56345.1| LIM domain only protein 2, partial [Macaca fascicularis]
Length = 146
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/106 (59%), Positives = 73/106 (68%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WHEDCL C C CRLGEVG LY K LC+RDYLRLFG G CA+C K I A+
Sbjct: 33 AIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAY 92
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE D E
Sbjct: 93 EMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYE 138
>gi|390345093|ref|XP_787486.3| PREDICTED: LIM domain transcription factor LMO4-B-like
[Strongylocentrotus purpuratus]
Length = 208
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 54/106 (50%), Positives = 77/106 (72%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D FWH CLKC CC+ +LG++G + + K +ILCK+DYLR+FGT+G C AC + IPA
Sbjct: 74 AVDRFWHTGCLKCSCCNVQLGDIGHSCFSKGGMILCKKDYLRIFGTSGACTACGQQIPAN 133
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
E+VMR +N VYHL+CFAC C+ + GDR+ + + I+CE D+ +
Sbjct: 134 ELVMRTQNRVYHLKCFACSSCHIQLVPGDRYTVVNGSIVCENDHSK 179
>gi|449270732|gb|EMC81388.1| Rhombotin-2, partial [Columba livia]
Length = 144
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/106 (59%), Positives = 73/106 (68%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WHEDCL C C CRLGEVG LY K LC+RDYLRLFG G CA+C K I A+
Sbjct: 31 AIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAY 90
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE D E
Sbjct: 91 EMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYE 136
>gi|354470381|ref|XP_003497486.1| PREDICTED: rhombotin-2-like [Cricetulus griseus]
gi|344238096|gb|EGV94199.1| Rhombotin-2 [Cricetulus griseus]
Length = 151
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/106 (59%), Positives = 73/106 (68%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WHEDCL C C CRLGEVG LY K LC+RDYLRLFG G CA+C K I A+
Sbjct: 38 AIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAY 97
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE D E
Sbjct: 98 EMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYE 143
>gi|355699530|gb|AES01158.1| LIM domain only 2 [Mustela putorius furo]
Length = 143
Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/106 (59%), Positives = 73/106 (68%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WHEDCL C C CRLGEVG LY K LC+RDYLRLFG G CA+C K I A+
Sbjct: 31 AIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAY 90
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE D E
Sbjct: 91 EMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYE 136
>gi|158258593|dbj|BAF85267.1| unnamed protein product [Homo sapiens]
Length = 165
Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 53/103 (51%), Positives = 75/103 (72%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WH CLKC CC +LG++G++ Y K+ +ILC+ DY+RLFG +G C+AC + IPA
Sbjct: 38 AMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPAS 97
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 103
E+VMRA+ NVYHL+CF C C +R GDRF+ + + CE+D
Sbjct: 98 ELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 140
>gi|440912098|gb|ELR61697.1| LIM domain transcription factor LMO4, partial [Bos grunniens mutus]
Length = 165
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 53/103 (51%), Positives = 75/103 (72%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WH CLKC CC +LG++G++ Y K+ +ILC+ DY+RLFG +G C+AC + IPA
Sbjct: 39 AMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPAS 98
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 103
E+VMRA+ NVYHL+CF C C +R GDRF+ + + CE+D
Sbjct: 99 ELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 141
>gi|395543649|ref|XP_003773727.1| PREDICTED: rhombotin-2 [Sarcophilus harrisii]
Length = 208
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/106 (59%), Positives = 72/106 (67%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WHEDCL C C CRLGEVG LY K LC+RDYLRLFG G CA+C K I A+
Sbjct: 95 AIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAY 154
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EM MR K VYHLECF C C FCVGDR+ L ++ I+CE D E
Sbjct: 155 EMTMRVKEKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYE 200
>gi|355558146|gb|EHH14926.1| hypothetical protein EGK_00938, partial [Macaca mulatta]
gi|355745433|gb|EHH50058.1| hypothetical protein EGM_00823, partial [Macaca fascicularis]
Length = 165
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 53/103 (51%), Positives = 75/103 (72%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WH CLKC CC +LG++G++ Y K+ +ILC+ DY+RLFG +G C+AC + IPA
Sbjct: 38 AMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPAS 97
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 103
E+VMRA+ NVYHL+CF C C +R GDRF+ + + CE+D
Sbjct: 98 ELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 140
>gi|281338511|gb|EFB14095.1| hypothetical protein PANDA_006061 [Ailuropoda melanoleuca]
Length = 164
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 53/103 (51%), Positives = 75/103 (72%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WH CLKC CC +LG++G++ Y K+ +ILC+ DY+RLFG +G C+AC + IPA
Sbjct: 38 AMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPAS 97
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 103
E+VMRA+ NVYHL+CF C C +R GDRF+ + + CE+D
Sbjct: 98 ELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 140
>gi|348513565|ref|XP_003444312.1| PREDICTED: LIM domain transcription factor LMO4-like [Oreochromis
niloticus]
Length = 176
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 53/103 (51%), Positives = 74/103 (71%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+D +WH CLKC CC +LGE+G++ Y K+ +ILC+ DY+RLFG +G C+AC + IPA
Sbjct: 38 TMDSYWHSRCLKCSCCQAQLGEIGTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPAS 97
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 103
E+VMRA+ NVYHL+CF C C +R GDRF+ + + CE+D
Sbjct: 98 ELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 140
>gi|123995901|gb|ABM85552.1| LIM domain only 4 [synthetic construct]
Length = 165
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 53/103 (51%), Positives = 75/103 (72%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WH CLKC CC +LG++G++ Y K+ +ILC+ DY+RLFG +G C+AC + IPA
Sbjct: 38 AMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPAS 97
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 103
E+VMRA+ NVYHL+CF C C +R GDRF+ + + CE+D
Sbjct: 98 ELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 140
>gi|225707862|gb|ACO09777.1| Rhombotin-2 [Osmerus mordax]
Length = 159
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/106 (58%), Positives = 73/106 (68%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A++ +WHEDCL C C CRLGEVG LY K LC+RDYLRLFG G CA+C K I AF
Sbjct: 45 AIEQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCEKRIRAF 104
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EM MR ++ VYHLECF C C FCVGDR+ L ++ I+CE D E
Sbjct: 105 EMTMRVRDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIFE 150
>gi|432861309|ref|XP_004069604.1| PREDICTED: rhombotin-2-like [Oryzias latipes]
Length = 160
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/106 (58%), Positives = 73/106 (68%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A++ +WHEDCL C C CRLGEVG LY K LC+RDYLRLFG G CA+C K I AF
Sbjct: 45 AIEQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCEKRIRAF 104
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EM MR ++ VYHLECF C C FCVGDR+ L ++ I+CE D E
Sbjct: 105 EMTMRVRDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIFE 150
>gi|18858983|ref|NP_571186.1| rhombotin-2 [Danio rerio]
gi|82223263|sp|Q9PTJ3.1|RBTN2_DANRE RecName: Full=Rhombotin-2; AltName: Full=LIM domain only protein 2;
Short=LMO-2; Short=zlmo2
gi|6049849|gb|AAF02779.1| LMO2 protein [Danio rerio]
Length = 159
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/106 (58%), Positives = 73/106 (68%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A++ +WHEDCL C C CRLGEVG LY K LC+RDYLRLFG G CA+C K I AF
Sbjct: 45 AIEQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCEKRIRAF 104
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EM MR ++ VYHLECF C C FCVGDR+ L ++ I+CE D E
Sbjct: 105 EMTMRVRDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIFE 150
>gi|301015740|pdb|2XJY|A Chain A, Crystal Structure Of The Lmo2:ldb1-Lid Complex, P21
Crystal Form
gi|301015742|pdb|2XJZ|A Chain A, Crystal Structure Of The Lmo2:ldb1-Lid Complex, C2 Crystal
Form
gi|301015743|pdb|2XJZ|B Chain B, Crystal Structure Of The Lmo2:ldb1-Lid Complex, C2 Crystal
Form
gi|301015744|pdb|2XJZ|C Chain C, Crystal Structure Of The Lmo2:ldb1-Lid Complex, C2 Crystal
Form
gi|301015745|pdb|2XJZ|D Chain D, Crystal Structure Of The Lmo2:ldb1-Lid Complex, C2 Crystal
Form
gi|301015746|pdb|2XJZ|E Chain E, Crystal Structure Of The Lmo2:ldb1-Lid Complex, C2 Crystal
Form
Length = 131
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/106 (59%), Positives = 73/106 (68%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WHEDCL C C CRLGEVG LY K LC+RDYLRLFG G CA+C K I A+
Sbjct: 20 AIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAY 79
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE D E
Sbjct: 80 EMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYE 125
>gi|355699533|gb|AES01159.1| LIM domain only 4 [Mustela putorius furo]
Length = 163
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 53/103 (51%), Positives = 75/103 (72%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WH CLKC CC +LG++G++ Y K+ +ILC+ DY+RLFG +G C+AC + IPA
Sbjct: 37 AMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPAS 96
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 103
E+VMRA+ NVYHL+CF C C +R GDRF+ + + CE+D
Sbjct: 97 ELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 139
>gi|348512977|ref|XP_003444019.1| PREDICTED: rhombotin-2-like [Oreochromis niloticus]
Length = 160
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/106 (58%), Positives = 73/106 (68%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A++ +WHEDCL C C CRLGEVG LY K LC+RDYLRLFG G CA+C K I AF
Sbjct: 45 AIEQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCEKRIRAF 104
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EM MR ++ VYHLECF C C FCVGDR+ L ++ I+CE D E
Sbjct: 105 EMTMRVRDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIFE 150
>gi|238231589|ref|NP_001153980.1| Rhombotin-2 [Oncorhynchus mykiss]
gi|225703168|gb|ACO07430.1| Rhombotin-2 [Oncorhynchus mykiss]
Length = 159
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/106 (58%), Positives = 73/106 (68%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A++ +WHEDCL C C CRLGEVG LY K LC+RDYLRLFG G CA+C K I AF
Sbjct: 45 AIEKYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCEKRIRAF 104
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EM MR ++ VYHLECF C C FCVGDR+ L ++ I+CE D E
Sbjct: 105 EMTMRVRDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIFE 150
>gi|345306388|ref|XP_001506631.2| PREDICTED: LIM domain transcription factor LMO4-like
[Ornithorhynchus anatinus]
Length = 175
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 53/103 (51%), Positives = 75/103 (72%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WH CLKC CC +LG++G++ Y K+ +ILC+ DY+RLFG +G C+AC + IPA
Sbjct: 38 AMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPAS 97
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 103
E+VMRA+ NVYHL+CF C C +R GDRF+ + + CE+D
Sbjct: 98 ELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 140
>gi|5803072|ref|NP_006760.1| LIM domain transcription factor LMO4 [Homo sapiens]
gi|6754560|ref|NP_034853.1| LIM domain transcription factor LMO4 [Mus musculus]
gi|57527555|ref|NP_001009708.1| LIM domain transcription factor LMO4 [Rattus norvegicus]
gi|77736447|ref|NP_001029923.1| LIM domain transcription factor LMO4 [Bos taurus]
gi|162951803|ref|NP_001106156.1| LIM domain transcription factor LMO4 [Sus scrofa]
gi|239937456|ref|NP_001155241.1| LIM domain transcription factor LMO4 [Mus musculus]
gi|239937458|ref|NP_001155242.1| LIM domain transcription factor LMO4 [Mus musculus]
gi|383872290|ref|NP_001244770.1| LIM domain transcription factor LMO4 [Macaca mulatta]
gi|57088261|ref|XP_537086.1| PREDICTED: LIM domain transcription factor LMO4 isoform 1 [Canis
lupus familiaris]
gi|73959644|ref|XP_867313.1| PREDICTED: LIM domain transcription factor LMO4 isoform 6 [Canis
lupus familiaris]
gi|114557534|ref|XP_001144748.1| PREDICTED: LIM domain transcription factor LMO4 isoform 6 [Pan
troglodytes]
gi|114557536|ref|XP_001144677.1| PREDICTED: LIM domain transcription factor LMO4 isoform 5 [Pan
troglodytes]
gi|149709390|ref|XP_001495634.1| PREDICTED: LIM domain transcription factor LMO4-like [Equus
caballus]
gi|291398567|ref|XP_002715923.1| PREDICTED: LIM domain only 4 isoform 1 [Oryctolagus cuniculus]
gi|291398569|ref|XP_002715924.1| PREDICTED: LIM domain only 4 isoform 2 [Oryctolagus cuniculus]
gi|296208425|ref|XP_002751086.1| PREDICTED: LIM domain transcription factor LMO4-like isoform 1
[Callithrix jacchus]
gi|296208427|ref|XP_002751087.1| PREDICTED: LIM domain transcription factor LMO4-like isoform 2
[Callithrix jacchus]
gi|297664521|ref|XP_002810690.1| PREDICTED: LIM domain transcription factor LMO4 isoform 1 [Pongo
abelii]
gi|297664523|ref|XP_002810691.1| PREDICTED: LIM domain transcription factor LMO4 isoform 2 [Pongo
abelii]
gi|301764579|ref|XP_002917710.1| PREDICTED: LIM domain transcription factor LMO4-like [Ailuropoda
melanoleuca]
gi|332221831|ref|XP_003260067.1| PREDICTED: LIM domain transcription factor LMO4 isoform 1 [Nomascus
leucogenys]
gi|332221833|ref|XP_003260068.1| PREDICTED: LIM domain transcription factor LMO4 isoform 2 [Nomascus
leucogenys]
gi|344278752|ref|XP_003411156.1| PREDICTED: LIM domain transcription factor LMO4-like [Loxodonta
africana]
gi|345801722|ref|XP_003434840.1| PREDICTED: LIM domain transcription factor LMO4 [Canis lupus
familiaris]
gi|395821809|ref|XP_003784224.1| PREDICTED: LIM domain transcription factor LMO4 [Otolemur
garnettii]
gi|397467290|ref|XP_003805357.1| PREDICTED: LIM domain transcription factor LMO4 [Pan paniscus]
gi|402855150|ref|XP_003892201.1| PREDICTED: LIM domain transcription factor LMO4 [Papio anubis]
gi|403305527|ref|XP_003943313.1| PREDICTED: LIM domain transcription factor LMO4 isoform 1 [Saimiri
boliviensis boliviensis]
gi|403305529|ref|XP_003943314.1| PREDICTED: LIM domain transcription factor LMO4 isoform 2 [Saimiri
boliviensis boliviensis]
gi|410967649|ref|XP_003990330.1| PREDICTED: LIM domain transcription factor LMO4 isoform 1 [Felis
catus]
gi|410967651|ref|XP_003990331.1| PREDICTED: LIM domain transcription factor LMO4 isoform 2 [Felis
catus]
gi|410967653|ref|XP_003990332.1| PREDICTED: LIM domain transcription factor LMO4 isoform 3 [Felis
catus]
gi|426215916|ref|XP_004002215.1| PREDICTED: LIM domain transcription factor LMO4 isoform 1 [Ovis
aries]
gi|426215918|ref|XP_004002216.1| PREDICTED: LIM domain transcription factor LMO4 isoform 2 [Ovis
aries]
gi|426330255|ref|XP_004026136.1| PREDICTED: LIM domain transcription factor LMO4 isoform 1 [Gorilla
gorilla gorilla]
gi|426330257|ref|XP_004026137.1| PREDICTED: LIM domain transcription factor LMO4 isoform 2 [Gorilla
gorilla gorilla]
gi|48428992|sp|P61968.1|LMO4_HUMAN RecName: Full=LIM domain transcription factor LMO4; AltName:
Full=Breast tumor autoantigen; AltName: Full=LIM domain
only protein 4; Short=LMO-4
gi|48428993|sp|P61969.1|LMO4_MOUSE RecName: Full=LIM domain transcription factor LMO4; AltName:
Full=Breast tumor autoantigen; AltName: Full=LIM domain
only protein 4; Short=LMO-4
gi|119371422|sp|Q3SWZ8.1|LMO4_BOVIN RecName: Full=LIM domain transcription factor LMO4; AltName:
Full=LIM domain only protein 4; Short=LMO-4
gi|1914877|gb|AAB51073.1|AAB51073 breast tumor autoantigen [Homo sapiens]
gi|3702854|gb|AAC62958.1| LIM domain transcription factor LMO4 [Mus musculus]
gi|3983077|gb|AAC83789.1| LIM only 4 [Mus musculus]
gi|4063896|gb|AAC98510.1| nuclear LIM-only 4 protein [Mus musculus]
gi|13097522|gb|AAH03488.1| Lmo4 protein [Mus musculus]
gi|13097819|gb|AAH03600.1| LIM domain only 4 [Homo sapiens]
gi|17389229|gb|AAH17673.1| LIM domain only 4 [Homo sapiens]
gi|26348597|dbj|BAC37938.1| unnamed protein product [Mus musculus]
gi|37537228|gb|AAH10278.3| LIM domain only 4 [Mus musculus]
gi|41351121|gb|AAH65818.1| LMO4 protein [Homo sapiens]
gi|56388757|gb|AAH87700.1| LIM domain only 4 [Rattus norvegicus]
gi|72679867|gb|AAI00383.1| Lmo4 protein [Mus musculus]
gi|74198060|dbj|BAE35210.1| unnamed protein product [Mus musculus]
gi|74209791|dbj|BAE23609.1| unnamed protein product [Mus musculus]
gi|74356507|gb|AAI04583.1| LIM domain only 4 [Bos taurus]
gi|119593574|gb|EAW73168.1| LIM domain only 4, isoform CRA_a [Homo sapiens]
gi|119593575|gb|EAW73169.1| LIM domain only 4, isoform CRA_a [Homo sapiens]
gi|123981088|gb|ABM82373.1| LIM domain only 4 [synthetic construct]
gi|148680084|gb|EDL12031.1| LIM domain only 4, isoform CRA_a [Mus musculus]
gi|148680085|gb|EDL12032.1| LIM domain only 4, isoform CRA_a [Mus musculus]
gi|148680086|gb|EDL12033.1| LIM domain only 4, isoform CRA_a [Mus musculus]
gi|149026128|gb|EDL82371.1| LIM domain only 4, isoform CRA_a [Rattus norvegicus]
gi|149026129|gb|EDL82372.1| LIM domain only 4, isoform CRA_a [Rattus norvegicus]
gi|149026130|gb|EDL82373.1| LIM domain only 4, isoform CRA_a [Rattus norvegicus]
gi|160858222|dbj|BAF93844.1| LIM domain only 4 [Sus scrofa]
gi|168275774|dbj|BAG10607.1| LIM domain transcription factor LMO4 [synthetic construct]
gi|296489301|tpg|DAA31414.1| TPA: LIM domain transcription factor LMO4 [Bos taurus]
gi|380785535|gb|AFE64643.1| LIM domain transcription factor LMO4 [Macaca mulatta]
gi|383411513|gb|AFH28970.1| LIM domain transcription factor LMO4 [Macaca mulatta]
gi|384944322|gb|AFI35766.1| LIM domain transcription factor LMO4 [Macaca mulatta]
gi|410208742|gb|JAA01590.1| LIM domain only 4 [Pan troglodytes]
gi|410247022|gb|JAA11478.1| LIM domain only 4 [Pan troglodytes]
gi|410297806|gb|JAA27503.1| LIM domain only 4 [Pan troglodytes]
gi|410340611|gb|JAA39252.1| LIM domain only 4 [Pan troglodytes]
gi|410340613|gb|JAA39253.1| LIM domain only 4 [Pan troglodytes]
Length = 165
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 53/103 (51%), Positives = 75/103 (72%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WH CLKC CC +LG++G++ Y K+ +ILC+ DY+RLFG +G C+AC + IPA
Sbjct: 38 AMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPAS 97
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 103
E+VMRA+ NVYHL+CF C C +R GDRF+ + + CE+D
Sbjct: 98 ELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 140
>gi|395530587|ref|XP_003767372.1| PREDICTED: LIM domain transcription factor LMO4 [Sarcophilus
harrisii]
Length = 165
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 53/103 (51%), Positives = 75/103 (72%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WH CLKC CC +LG++G++ Y K+ +ILC+ DY+RLFG +G C+AC + IPA
Sbjct: 38 AMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPAS 97
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 103
E+VMRA+ NVYHL+CF C C +R GDRF+ + + CE+D
Sbjct: 98 ELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 140
>gi|410908487|ref|XP_003967722.1| PREDICTED: rhombotin-2-like [Takifugu rubripes]
Length = 160
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/106 (58%), Positives = 73/106 (68%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A++ +WHEDCL C C CRLGEVG LY K LC+RDYLRLFG G CA+C K I AF
Sbjct: 45 AIEQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCEKRIRAF 104
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EM MR ++ VYHLECF C C FCVGDR+ L ++ I+CE D E
Sbjct: 105 EMTMRVRDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIFE 150
>gi|213514626|ref|NP_001133485.1| Rhombotin-2 [Salmo salar]
gi|209154196|gb|ACI33330.1| Rhombotin-2 [Salmo salar]
Length = 159
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/106 (58%), Positives = 73/106 (68%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A++ +WHEDCL C C CRLGEVG LY K LC+RDYLRLFG G CA+C K I AF
Sbjct: 45 AIEKYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCEKRIRAF 104
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EM MR ++ VYHLECF C C FCVGDR+ L ++ I+CE D E
Sbjct: 105 EMTMRVRDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIFE 150
>gi|224057485|ref|XP_002195837.1| PREDICTED: LIM domain transcription factor LMO4 [Taeniopygia
guttata]
Length = 165
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 53/103 (51%), Positives = 75/103 (72%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WH CLKC CC +LG++G++ Y K+ +ILC+ DY+RLFG +G C+AC + IPA
Sbjct: 38 AMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPAS 97
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 103
E+VMRA+ NVYHL+CF C C +R GDRF+ + + CE+D
Sbjct: 98 ELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 140
>gi|147902984|ref|NP_001081112.1| rhombotin-2 [Xenopus laevis]
gi|82245456|sp|Q90XH3.1|RBTN2_XENLA RecName: Full=Rhombotin-2; AltName: Full=LIM domain only protein 2;
Short=LMO-2; Short=Lmo2-A; Short=xLMO-2
gi|14150745|gb|AAK54614.1|AF374473_1 LIM-only protein LMO-2 [Xenopus laevis]
gi|66911743|gb|AAH97502.1| Lmo2-A protein [Xenopus laevis]
Length = 158
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/106 (58%), Positives = 72/106 (67%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WHEDCL C C CRLGEVG LY K LC+RDYLRLFG G CA+C I A+
Sbjct: 45 AIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDNRIRAY 104
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE D E
Sbjct: 105 EMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYE 150
>gi|45383886|ref|NP_989443.1| LIM domain transcription factor LMO4 [Gallus gallus]
gi|22347822|gb|AAM95988.1| LIM domain only 4 protein [Gallus gallus]
Length = 165
Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 53/103 (51%), Positives = 75/103 (72%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WH CLKC CC +LG++G++ Y K+ +ILC+ DY+RLFG +G C+AC + IPA
Sbjct: 38 AMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPAS 97
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 103
E+VMRA+ NVYHL+CF C C +R GDRF+ + + CE+D
Sbjct: 98 ELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 140
>gi|62751505|ref|NP_001015822.1| LIM domain transcription factor LMO4.1 [Xenopus (Silurana)
tropicalis]
gi|82194932|sp|Q5FVB2.1|LMO41_XENTR RecName: Full=LIM domain transcription factor LMO4.1; AltName:
Full=LIM domain only protein 4.1; Short=LMO-4.1
gi|58475879|gb|AAH90104.1| LIM domain only 4 [Xenopus (Silurana) tropicalis]
Length = 167
Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 53/103 (51%), Positives = 76/103 (73%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+++ +WH CLKC CC +LGE+G++ Y K+ +ILC+ DY+RLFG++G C+AC + IPA
Sbjct: 39 SMERYWHTRCLKCSCCQAQLGEIGTSCYTKSGMILCRNDYIRLFGSSGACSACGQSIPAS 98
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 103
EMVMRA+ +VYHL+CF C C +R GDRF+ + I CE+D
Sbjct: 99 EMVMRAQGSVYHLKCFTCATCRNRLVPGDRFHYVNGAIFCEHD 141
>gi|444524171|gb|ELV13774.1| Rhombotin-2 [Tupaia chinensis]
Length = 151
Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 62/106 (58%), Positives = 73/106 (68%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WHEDCL C C CRLGE G LY K LC+RDYLRLFG G CA+C K I A+
Sbjct: 38 AIDQYWHEDCLSCDLCGCRLGEGGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAY 97
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE+D E
Sbjct: 98 EMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLVNSDIVCEHDIYE 143
>gi|148224772|ref|NP_001079179.1| LIM domain transcription factor LMO4-A [Xenopus laevis]
gi|82211818|sp|Q8AW92.1|LMO4A_XENLA RecName: Full=LIM domain transcription factor LMO4-A; AltName:
Full=LIM domain only protein 4-A; Short=LMO-4-A;
AltName: Full=Xlmo4
gi|26986407|emb|CAD54077.1| lmo4 protein [Xenopus laevis]
gi|83318438|gb|AAI08586.1| Lmo4-A protein [Xenopus laevis]
Length = 171
Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 54/103 (52%), Positives = 74/103 (71%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
++D +WH CLKC CC +LGE+G++ Y K+ +ILC+ DY+RLFG +G C AC + IPA
Sbjct: 39 SMDRYWHTRCLKCSCCQAQLGEIGTSCYTKSGMILCRNDYIRLFGNSGACNACGQSIPAS 98
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 103
EMVMRA+ +VYHL+CF C C +R GDRF+ + I CE+D
Sbjct: 99 EMVMRAQGSVYHLKCFTCATCRNRLVPGDRFHYVNGTIFCEHD 141
>gi|291240630|ref|XP_002740222.1| PREDICTED: LIM domain only 4-like [Saccoglossus kowalevskii]
Length = 180
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 54/104 (51%), Positives = 75/104 (72%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WH CLKC CC +LGE+G + + K +ILCK+DYLRLFG +G C++C + IPA
Sbjct: 58 ALDRYWHTGCLKCTCCGAQLGELGPSCFSKGGMILCKKDYLRLFGNSGACSSCGQSIPAS 117
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 104
E+VMRA+ NVYH +CFAC C+++ GDRF + + + CE D+
Sbjct: 118 ELVMRAQGNVYHQKCFACTSCHNQLVPGDRFLIVNGNLFCETDH 161
>gi|147900853|ref|NP_001079705.1| LIM domain transcription factor LMO4-B [Xenopus laevis]
gi|82210060|sp|Q801P0.1|LMO4B_XENLA RecName: Full=LIM domain transcription factor LMO4-B; AltName:
Full=LIM domain only protein 4-B; Short=LMO-4-B
gi|29126820|gb|AAH48020.1| Lmo4-b protein [Xenopus laevis]
Length = 171
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 54/103 (52%), Positives = 74/103 (71%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
++D +WH CLKC CC +LGE+G++ Y K+ +ILC+ DY+RLFG +G C AC + IPA
Sbjct: 39 SMDRYWHTRCLKCSCCQAQLGEIGTSCYTKSGMILCRNDYIRLFGNSGACNACGQSIPAS 98
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 103
EMVMRA+ +VYHL+CF C C +R GDRF+ + I CE+D
Sbjct: 99 EMVMRAQGSVYHLKCFTCATCRNRLVPGDRFHYVNGTIFCEHD 141
>gi|47086665|ref|NP_997854.1| LIM domain transcription factor LMO4 [Danio rerio]
gi|22652064|gb|AAN03596.1|AF398515_1 LIM-only 4 [Danio rerio]
Length = 165
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 54/103 (52%), Positives = 74/103 (71%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WH CLKC CC +LGE+G+ Y K+ +ILC+ DY+RLFG +G C+AC + IPA
Sbjct: 38 AMDSYWHSRCLKCSCCQAQLGEIGTFCYTKSGMILCRNDYIRLFGNSGACSACGQSIPAS 97
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 103
E+VMRA+ NVYHL+CF C C +R GDRF+ + + CE+D
Sbjct: 98 ELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 140
>gi|335776020|gb|AEH58766.1| LIM domain transcription factor LMO4-like protein [Equus caballus]
Length = 129
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 53/103 (51%), Positives = 75/103 (72%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WH CLKC CC +LG++G++ Y K+ +ILC+ DY+RLFG +G C+AC + IPA
Sbjct: 5 AMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPAS 64
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 103
E+VMRA+ NVYHL+CF C C +R GDRF+ + + CE+D
Sbjct: 65 ELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 107
>gi|47224482|emb|CAG08732.1| unnamed protein product [Tetraodon nigroviridis]
Length = 153
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 62/106 (58%), Positives = 73/106 (68%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A++ +WHEDCL C C CRLGEVG LY K LC+RDYLRLFG G CA+C K I AF
Sbjct: 40 AIEQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCEKRIRAF 99
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EM MR ++ VYHLECF C C FCVGDR+ L ++ I+CE D E
Sbjct: 100 EMTMRVRDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIFE 145
>gi|47210680|emb|CAF90424.1| unnamed protein product [Tetraodon nigroviridis]
Length = 166
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 52/103 (50%), Positives = 74/103 (71%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
++ +WH CLKC CC +LGE+G++ Y K+ +ILC+ DY+RLFG +G C+AC + IPA
Sbjct: 39 TMESYWHSRCLKCSCCQAQLGEIGTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPAS 98
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 103
E+VMRA+ NVYHL+CF C C +R GDRF+ + + CE+D
Sbjct: 99 ELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYVNGSLFCEHD 141
>gi|62202595|gb|AAH93136.1| Lmo2 protein [Danio rerio]
Length = 159
Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 61/106 (57%), Positives = 72/106 (67%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A++ +WHEDCL C C CRLGEVG LY K LC+RDYLRLFG G CA+C K I AF
Sbjct: 45 AIEQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCEKRIRAF 104
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EM MR ++ VYHLECF C C FC GDR+ L ++ I+CE D E
Sbjct: 105 EMTMRVRDKVYHLECFKCAACQKHFCAGDRYLLINSDIVCEQDIFE 150
>gi|118137504|pdb|2DFY|X Chain X, Crystal Structure Of A Cyclized Protein Fusion Of Lmo4 Lim
Domains 1 And 2 With The Lim Interacting Domain Of Ldb1
gi|118137505|pdb|2DFY|C Chain C, Crystal Structure Of A Cyclized Protein Fusion Of Lmo4 Lim
Domains 1 And 2 With The Lim Interacting Domain Of Ldb1
Length = 195
Score = 128 bits (322), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 52/103 (50%), Positives = 74/103 (71%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WH CLKC C +LG++G++ Y K+ +ILC+ DY+RLFG +G C+AC + IPA
Sbjct: 21 AMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPAS 80
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 103
E+VMRA+ NVYHL+CF C C +R GDRF+ + + CE+D
Sbjct: 81 ELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 123
>gi|56553691|pdb|1RUT|X Chain X, Complex Of Lmo4 Lim Domains 1 And 2 With The Ldb1 Lid
Domain
Length = 188
Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 52/103 (50%), Positives = 74/103 (71%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WH CLKC C +LG++G++ Y K+ +ILC+ DY+RLFG +G C+AC + IPA
Sbjct: 23 AMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPAS 82
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 103
E+VMRA+ NVYHL+CF C C +R GDRF+ + + CE+D
Sbjct: 83 ELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 125
>gi|225708480|gb|ACO10086.1| LIM domain transcription factor LMO4 [Osmerus mordax]
Length = 159
Score = 128 bits (321), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 53/103 (51%), Positives = 75/103 (72%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+++ +WH CLKC CC +LG++G++ Y K +ILC+ DY+RLFG +G C+AC + IPA
Sbjct: 31 SMERYWHTRCLKCSCCHAQLGDIGTSCYSKGGMILCRSDYIRLFGHSGACSACGQSIPAN 90
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 103
EMVMRA+ NVYHL+CF+C C +R GDRF+ + I CE+D
Sbjct: 91 EMVMRAQGNVYHLKCFSCATCRNRLVPGDRFHYVNGTIFCEHD 133
>gi|432952552|ref|XP_004085130.1| PREDICTED: LIM domain transcription factor LMO4.1-like [Oryzias
latipes]
Length = 162
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 58/123 (47%), Positives = 75/123 (60%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+++ +WH CLKC CC LGE ST Y K +ILCK DY+RLFG +G C AC + IPA
Sbjct: 39 SMERYWHTRCLKCSCCHAPLGEFSSTCYSKGGMILCKNDYIRLFGHSGACCACGQSIPAS 98
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFCVGDRFYLCD 120
EMVMRA+ NVYHL+CF C C +R GDRF+ + I CE+D + + D
Sbjct: 99 EMVMRAQGNVYHLKCFTCATCRNRLVPGDRFHYINGTIFCEHDRPGGGLHAGHPSSIMSD 158
Query: 121 NKI 123
K+
Sbjct: 159 QKV 161
>gi|156373115|ref|XP_001629379.1| predicted protein [Nematostella vectensis]
gi|156216378|gb|EDO37316.1| predicted protein [Nematostella vectensis]
Length = 153
Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 53/103 (51%), Positives = 74/103 (71%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WH +CLKC CC+ RLGE+G++ Y K +ILCK DY+RL+G +G CA C K+IPA
Sbjct: 34 ALDQYWHVNCLKCSCCEARLGEIGTSCYSKGGMILCKTDYVRLYGNSGACAVCAKLIPAT 93
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 103
E+VM+ VYHL CF C C+++ GDRF++ + ++ CE D
Sbjct: 94 ELVMKVLGKVYHLHCFTCTTCHNQLVPGDRFHVVNGRLFCEND 136
>gi|339244905|ref|XP_003378378.1| putative LIM domain protein [Trichinella spiralis]
gi|316972716|gb|EFV56377.1| putative LIM domain protein [Trichinella spiralis]
Length = 164
Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/100 (62%), Positives = 78/100 (78%), Gaps = 2/100 (2%)
Query: 13 CGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYH 72
C C+CRL +VGS+L+ K ++ILCK DYLR+FG G C+AC+K IPA EMVMRA NVYH
Sbjct: 33 CAMCNCRLTQVGSSLFVKKDMILCKTDYLRVFGLKGKCSACSKDIPACEMVMRAGKNVYH 92
Query: 73 LECFACQQCNHRFCVGDRFYL--CDNKILCEYDYEERQVF 110
LECF CQ C+ RFCVG++FYL +N+ILCE D++ER V
Sbjct: 93 LECFGCQDCHCRFCVGEKFYLDVDNNRILCEDDFKERMVL 132
>gi|260820588|ref|XP_002605616.1| hypothetical protein BRAFLDRAFT_232718 [Branchiostoma floridae]
gi|229290951|gb|EEN61626.1| hypothetical protein BRAFLDRAFT_232718 [Branchiostoma floridae]
Length = 147
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/114 (54%), Positives = 76/114 (66%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WHEDCL C C CRLGEVG LY K LCKRDYLRLFG G C AC K I A+
Sbjct: 34 AMDEYWHEDCLSCDLCGCRLGEVGRHLYSKYGRKLCKRDYLRLFGKDGICCACGKRIRAY 93
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFCVGD 114
EM+MR+ + V+HL+CF C CN FCVGD++ L +N I C+ D E + + D
Sbjct: 94 EMMMRSLDKVFHLDCFKCFTCNKNFCVGDKYVLLENTIFCDNDIPEFRELILDD 147
>gi|380029439|ref|XP_003698380.1| PREDICTED: uncharacterized protein LOC100872944 [Apis florea]
Length = 478
Score = 125 bits (313), Expect = 8e-27, Method: Composition-based stats.
Identities = 48/106 (45%), Positives = 69/106 (65%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WH CLKC C L E+G + Y ++ +ILCK DY R+FG++G CA C IPA
Sbjct: 270 AMDRYWHNGCLKCSYCGAALAEIGHSCYTRSGMILCKSDYRRMFGSSGACAGCGNAIPAT 329
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
E+VMRA +V+H +CF C +C ++ GDR+YL +CE D+ +
Sbjct: 330 ELVMRAGGSVFHQKCFTCSKCGNQLVSGDRYYLLSGSPVCETDWHK 375
>gi|270154817|gb|ACZ62637.1| LIM domain only protein [Paracentrotus lividus]
Length = 174
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 56/102 (54%), Positives = 72/102 (70%), Gaps = 1/102 (0%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A++ +WHEDCL C C CRLGEV +Y K LCKRDYLRLF +G C+AC + IPA+
Sbjct: 71 AMEKYWHEDCLSCDLCQCRLGEVDCHMYSKLGRKLCKRDYLRLFAPSGVCSACNRAIPAY 130
Query: 61 EMVMRAKNNV-YHLECFACQQCNHRFCVGDRFYLCDNKILCE 101
E+VM + YHLECF C QC+ FCVGD+++L +KI+CE
Sbjct: 131 ELVMTTSSECRYHLECFKCSQCDKHFCVGDKYFLVGSKIMCE 172
>gi|390358172|ref|XP_003729196.1| PREDICTED: rhombotin-2-like [Strongylocentrotus purpuratus]
Length = 174
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/102 (54%), Positives = 72/102 (70%), Gaps = 1/102 (0%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A++ +WHEDCL C C CRLGEV +Y K LCKRDYLRLF +G C+AC + IPA+
Sbjct: 71 AIEKYWHEDCLSCDLCQCRLGEVDCHMYSKLGRKLCKRDYLRLFAPSGVCSACNRAIPAY 130
Query: 61 EMVMRAKNNV-YHLECFACQQCNHRFCVGDRFYLCDNKILCE 101
E+VM + YHLECF C QC+ FCVGD+++L +KI+CE
Sbjct: 131 ELVMTTSSECRYHLECFKCSQCDKHFCVGDKYFLVGSKIMCE 172
>gi|410903283|ref|XP_003965123.1| PREDICTED: LIM domain transcription factor LMO4-B-like [Takifugu
rubripes]
Length = 233
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 51/109 (46%), Positives = 72/109 (66%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+++ +WH CL+C CC LGE + Y + +ILCK DY+RLFG TG C+AC + IP
Sbjct: 38 SMERYWHTRCLRCSCCHAELGEFSRSCYSRGGMILCKDDYIRLFGHTGACSACGQTIPPS 97
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQV 109
EMVMRA+ +VYHL+CF C C +R GDRF+ + I CE+D+ ++
Sbjct: 98 EMVMRAQGSVYHLKCFTCATCRNRLVPGDRFHYINGSIFCEHDHPGPEL 146
>gi|241738263|ref|XP_002414043.1| rhombotin, putative [Ixodes scapularis]
gi|215507897|gb|EEC17351.1| rhombotin, putative [Ixodes scapularis]
Length = 80
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 56/68 (82%), Positives = 61/68 (89%)
Query: 43 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEY 102
LFGTTG C+AC K IPAFEMVMRA+ NVYHLECFACQQCN RFCVGDRFYL +N+ILCEY
Sbjct: 1 LFGTTGLCSACNKTIPAFEMVMRARGNVYHLECFACQQCNQRFCVGDRFYLHENRILCEY 60
Query: 103 DYEERQVF 110
DYEER +F
Sbjct: 61 DYEERMIF 68
>gi|427795151|gb|JAA63027.1| hypothetical protein, partial [Rhipicephalus pulchellus]
Length = 182
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 52/103 (50%), Positives = 74/103 (71%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WH CLKC CC L ++G++ + KA +ILC+ DY+RLFGT+G C+ C ++IPA
Sbjct: 57 ALDRYWHNGCLKCSCCQATLADIGASCFAKAGMILCRNDYIRLFGTSGACSGCGQMIPAN 116
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 103
+ VMRA NVYH++CFAC +C+ + GDR+ L + +LCE D
Sbjct: 117 DYVMRAAQNVYHVKCFACVKCHSQLVPGDRYNLVNGNVLCEQD 159
>gi|349803667|gb|AEQ17306.1| putative rhombotin-2 [Pipa carvalhoi]
Length = 130
Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 61/106 (57%), Positives = 72/106 (67%), Gaps = 1/106 (0%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WHEDCL C C CRLG VG LY K LC+RDYLRLFG G CA+C K I A+
Sbjct: 19 AIDQYWHEDCLSCDLCGCRLG-VGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAY 77
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EM MR K+ VYHLECF C C FCVG+R+ L ++ I+CE D E
Sbjct: 78 EMTMRVKDKVYHLECFKCAACQKHFCVGNRYLLINSDIVCEQDIYE 123
>gi|156549266|ref|XP_001599629.1| PREDICTED: lipoma-preferred partner homolog [Nasonia vitripennis]
Length = 281
Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 51/106 (48%), Positives = 69/106 (65%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
AL+ +WH +CLKC C L E+G + Y K N+ILCK DY R+FG+TG CAAC + I A
Sbjct: 147 ALERYWHNNCLKCTTCGTALAEIGQSCYSKGNMILCKNDYTRMFGSTGACAACGQTIAAT 206
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
E+V RA NV+H +CF C +C + GDR+YL +CE D+ +
Sbjct: 207 ELVTRAGGNVFHPKCFTCTKCGTQLTQGDRYYLLSGAAVCETDFNK 252
>gi|47206717|emb|CAG12297.1| unnamed protein product [Tetraodon nigroviridis]
Length = 137
Score = 121 bits (304), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 51/110 (46%), Positives = 70/110 (63%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+++ +WH CL+C CC +LG + + Y + LILC+ DY RLFG G C AC + IP
Sbjct: 18 SMERYWHTRCLRCSCCHAQLGALSRSCYSRGGLILCRDDYARLFGHAGACGACGQTIPPS 77
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVF 110
EMVMRA+ +VYHL+CFAC C HR GDRF+ + + CE D+ Q+
Sbjct: 78 EMVMRAQGSVYHLKCFACATCRHRLVPGDRFHYVNGSVFCEQDHPGGQLL 127
>gi|41053684|ref|NP_956566.1| uncharacterized protein LOC393242 [Danio rerio]
gi|29124458|gb|AAH49054.1| Zgc:56628 [Danio rerio]
Length = 172
Score = 121 bits (304), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 56/103 (54%), Positives = 72/103 (69%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WH CLKC CC +L E+GS+ + K LILCK DYLRLFG +G C AC IPA
Sbjct: 49 ALDGYWHCHCLKCSCCQAQLAEIGSSCFTKRGLILCKSDYLRLFGHSGACRACGTSIPAN 108
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 103
EMVMRA+ NV+H++CF C C+++ GDRF+ + K+ CE D
Sbjct: 109 EMVMRAQGNVFHVKCFVCSICHNQLVPGDRFHYANGKLYCERD 151
>gi|350396214|ref|XP_003484481.1| PREDICTED: LIM/homeobox protein Lhx9-like [Bombus impatiens]
Length = 417
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 69/106 (65%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WH CLKC C L E+G + Y ++ +ILCK DY R+FG++G CA C IPA
Sbjct: 209 AMDRYWHNGCLKCSYCGAALAEIGHSCYTRSGMILCKSDYRRMFGSSGACAGCGNAIPAT 268
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
E+VMRA +V+H +CF C +C ++ GDR+YL +CE D+ +
Sbjct: 269 ELVMRAGGSVFHQKCFTCSKCGNQLVSGDRYYLLSGSPVCETDWHK 314
>gi|328781883|ref|XP_396576.4| PREDICTED: hypothetical protein LOC413125, partial [Apis mellifera]
Length = 417
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 69/106 (65%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WH CLKC C L E+G + Y ++ +ILCK DY R+FG++G CA C IPA
Sbjct: 208 AMDRYWHNGCLKCSYCGAALAEIGHSCYTRSGMILCKSDYRRMFGSSGACAGCGNAIPAT 267
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
E+VMRA +V+H +CF C +C ++ GDR+YL +CE D+ +
Sbjct: 268 ELVMRAGGSVFHQKCFTCSKCGNQLVSGDRYYLLSGSPVCETDWHK 313
>gi|321477752|gb|EFX88710.1| hypothetical protein DAPPUDRAFT_6311 [Daphnia pulex]
Length = 126
Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 54/104 (51%), Positives = 71/104 (68%), Gaps = 1/104 (0%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD FWH CLKC CC RL ++G + Y KA +ILC+ DY+RLFG++G C+AC + IPA
Sbjct: 23 ALDRFWHHGCLKCSCCGARLADIGVSCYTKAGMILCRADYVRLFGSSGACSACGQGIPAN 82
Query: 61 EMVMRAKN-NVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 103
E+VMR VYH++CFAC +C + GDR+ L +LCE D
Sbjct: 83 ELVMRVGGAGVYHVKCFACTKCQTQLMPGDRYALIGGSLLCEQD 126
>gi|291223505|ref|XP_002731750.1| PREDICTED: LIM domain only protein-like [Saccoglossus kowalevskii]
Length = 153
Score = 118 bits (296), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 58/105 (55%), Positives = 69/105 (65%), Gaps = 1/105 (0%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+ +WHEDCL C C CRLGEVG + K LCKRDYLRLFG TG C +C + I A+
Sbjct: 38 AIGKYWHEDCLVCDLCQCRLGEVGCHVLVKLGRKLCKRDYLRLFGPTGLCNSCQQPIAAY 97
Query: 61 EMVMRAKNNV-YHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 104
EM M+ V YHLECF C +C FCVGD+FY ++ I CE DY
Sbjct: 98 EMAMKITPQVQYHLECFKCAECEKNFCVGDKFYNLESNIFCETDY 142
>gi|405963181|gb|EKC28778.1| LIM domain transcription factor LMO4.1 [Crassostrea gigas]
Length = 165
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/109 (50%), Positives = 71/109 (65%), Gaps = 1/109 (0%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A++ FWH CLKC CC L ++GS + +A +ILCK DY+RLF + G CA C + IPA
Sbjct: 38 AMERFWHTACLKCSCCQTNLEQLGS-CFTRAGMILCKNDYMRLFCSGGSCAGCGQSIPAN 96
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQV 109
EMVMR + NVYHL+CF C CN GDRF + + I+CE DY + V
Sbjct: 97 EMVMRTQGNVYHLKCFNCYTCNMPLSPGDRFGVVNGNIICENDYSKANV 145
>gi|260793702|ref|XP_002591850.1| hypothetical protein BRAFLDRAFT_125337 [Branchiostoma floridae]
gi|229277061|gb|EEN47861.1| hypothetical protein BRAFLDRAFT_125337 [Branchiostoma floridae]
Length = 329
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 56/132 (42%), Positives = 78/132 (59%), Gaps = 4/132 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WH CLKC CC +LG++GS+ + KA +ILCK DY+RLFG +G C AC + IPA
Sbjct: 80 ALDRYWHVACLKCSCCQAQLGDIGSSCFSKAGMILCKTDYIRLFGASGACNACGQSIPAN 139
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKIL----CEYDYEERQVFCVGDRF 116
E VMR + NVYH++CF C C ++ GD L +L C + + R+
Sbjct: 140 EFVMRTQGNVYHVKCFTCFTCRYQLSPGDSSLLSRVGVLTATRCCHAARKGDPSRSHRRY 199
Query: 117 YLCDNKILCEYD 128
+ + +I CE D
Sbjct: 200 HFVNGRIFCEQD 211
>gi|91082483|ref|XP_972328.1| PREDICTED: similar to GA19074-PA [Tribolium castaneum]
gi|270007532|gb|EFA03980.1| hypothetical protein TcasGA2_TC014129 [Tribolium castaneum]
Length = 341
Score = 115 bits (288), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 72/116 (62%), Gaps = 10/116 (8%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WH CLKC CC L ++G++ + K +ILCK+DY RLFG +G C+AC ++IPA
Sbjct: 202 ALDRYWHNSCLKCSCCAAMLADIGTSCFTKGGMILCKQDYTRLFGNSGACSACGQMIPAS 261
Query: 61 EMVMRAKN----------NVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
E VMR+ +V+HL+CF C +C GDR+Y+ ++CE D+ +
Sbjct: 262 EFVMRSGGPSPQQPGAPLHVFHLKCFVCSKCGAPLVQGDRYYMLSGSLVCEQDWHK 317
>gi|242011268|ref|XP_002426377.1| LIM domain transcription factor LMO4, putative [Pediculus humanus
corporis]
gi|212510454|gb|EEB13639.1| LIM domain transcription factor LMO4, putative [Pediculus humanus
corporis]
Length = 256
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 53/116 (45%), Positives = 72/116 (62%), Gaps = 10/116 (8%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WH CLKC CC L ++GS+ + KA +ILCK DY RLFG TG C+AC + IP
Sbjct: 112 ALDRYWHNGCLKCSCCHAMLADIGSSCFTKAGMILCKTDYARLFGNTGACSACGQTIPPN 171
Query: 61 EMVMRA----------KNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
E VMRA ++V+HL+CF C +C + GDR+YL ++CE D+ +
Sbjct: 172 EFVMRAGAGAPGPHPQSHHVFHLKCFVCSKCGTQLVQGDRYYLLAGSLVCEQDWHK 227
>gi|403182403|gb|EAT47695.2| AAEL001207-PA [Aedes aegypti]
Length = 702
Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats.
Identities = 51/136 (37%), Positives = 72/136 (52%), Gaps = 31/136 (22%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WH CLKC CC L ++GS+ Y ++ +ILCK DY RLFG TG C+AC + IPA
Sbjct: 92 ALDRYWHNSCLKCSCCGAMLADIGSSCYTRSGMILCKADYSRLFG-TGACSACHQTIPAN 150
Query: 61 EMVMRA------------------------------KNNVYHLECFACQQCNHRFCVGDR 90
E VMR +++V+HL+CF C +C GDR
Sbjct: 151 EFVMRTTSHTTINNNLNNASNQNGANNNNNNGQAVPQHHVFHLKCFQCSKCGCHLVQGDR 210
Query: 91 FYLCDNKILCEYDYEE 106
+Y+ ++CE D+ +
Sbjct: 211 YYMLGGSLVCEQDWHK 226
>gi|345317962|ref|XP_001520897.2| PREDICTED: rhombotin-1-like, partial [Ornithorhynchus anatinus]
Length = 116
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 51/69 (73%), Positives = 60/69 (86%)
Query: 41 LRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILC 100
L LFGTTG CAAC+K+IPAFEMVMRA+ NVYHL+CFACQ CN RFCVGD+F+L +N ILC
Sbjct: 39 LWLFGTTGNCAACSKLIPAFEMVMRARENVYHLDCFACQLCNQRFCVGDKFFLKNNMILC 98
Query: 101 EYDYEERQV 109
+ DYEE Q+
Sbjct: 99 QMDYEEGQL 107
>gi|256071672|ref|XP_002572163.1| lim-only [Schistosoma mansoni]
gi|353229928|emb|CCD76099.1| putative lim-only [Schistosoma mansoni]
Length = 294
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 68/105 (64%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D FWH CL C CC RL E+G +++ ++N++LC++DYL+LFG +G CA C IP
Sbjct: 20 AIDRFWHTSCLNCSCCGLRLDELGPSVFVRSNMLLCRQDYLKLFGLSGTCAKCRVQIPPD 79
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
E+VMR ++ VYH+ CF C C+ GD+ D + CE+++
Sbjct: 80 ELVMRCQDKVYHVNCFCCTHCHSPLHPGDKVCFMDGNLFCEHEFP 124
>gi|358335730|dbj|GAA54362.1| LIM domain transcription factor LMO4-B [Clonorchis sinensis]
Length = 303
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 71/106 (66%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD FWH CL C CC RL E+G +++ +++++LC++DYLRLFG +G CA C + IP
Sbjct: 20 ALDRFWHTGCLNCSCCGLRLDELGPSVFVRSDMLLCRQDYLRLFGLSGTCAKCRQKIPPD 79
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
E+VMR + +VYH+ CF C C+ + GD+ L + + CE ++ +
Sbjct: 80 ELVMRCQESVYHVRCFCCFHCHAQLNPGDKVCLVEGNLFCELEFPQ 125
>gi|189503044|gb|ACE06903.1| unknown [Schistosoma japonicum]
gi|226469222|emb|CAX70090.1| LIM domain transcription factor LMO4 [Schistosoma japonicum]
gi|226469224|emb|CAX70091.1| LIM domain transcription factor LMO4 [Schistosoma japonicum]
gi|226469226|emb|CAX70092.1| LIM domain transcription factor LMO4 [Schistosoma japonicum]
Length = 291
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 68/105 (64%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D FWH CL C CC RL E+G +++ ++N++LC++DYL+LFG +G CA C IP
Sbjct: 20 AIDRFWHTTCLNCSCCGLRLDELGPSVFVRSNMLLCRQDYLKLFGLSGTCAKCRVQIPPD 79
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
E+VMR ++ VYH+ CF C C+ GD+ D + CE+++
Sbjct: 80 ELVMRCQDKVYHVNCFCCTHCHSPLHPGDKVCFMDGNLFCEHEFP 124
>gi|29841053|gb|AAP06066.1| similar to NM_006769 LIM domain only 4 in Homo sapiens [Schistosoma
japonicum]
Length = 291
Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 67/105 (63%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D FWH CL C CC RL E G +++ ++N++LC++DYL+LFG +G CA C IP
Sbjct: 20 AIDRFWHTTCLNCSCCGLRLDEFGPSVFVRSNMLLCRQDYLKLFGLSGTCAKCRVQIPPD 79
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
E+VMR ++ VYH+ CF C C+ GD+ D + CE+++
Sbjct: 80 ELVMRCQDKVYHVNCFCCTHCHSPLHPGDKVCFMDGNLFCEHEFP 124
>gi|237512911|dbj|BAA07578.2| LIM homeodomain protein Hr-Lhx3 a-form [Halocynthia roretzi]
Length = 690
Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats.
Identities = 46/102 (45%), Positives = 64/102 (62%), Gaps = 6/102 (5%)
Query: 6 WHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMR 65
WH CLKC C +L E + + NL+ CK D+ + FGT C AC IP E++ R
Sbjct: 302 WHSQCLKCNDCSAQLSE---KCFSRGNLVFCKDDFFKRFGTK--CTACGHGIPPTEVIRR 356
Query: 66 AKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYEE 106
A++NVYHLECF C C+ + GD+FYL DN+++C+ DYE+
Sbjct: 357 AQDNVYHLECFCCFLCHEKMGTGDQFYLLEDNRLVCKKDYEQ 398
>gi|37779048|gb|AAP20184.1| LIM domain only-2 [Pagrus major]
Length = 127
Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 49/78 (62%), Positives = 56/78 (71%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A++ +WHEDCL C C CRLGEVG LY K LC+RDYLRLFG G CA+C K I AF
Sbjct: 48 AIEQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCEKRIRAF 107
Query: 61 EMVMRAKNNVYHLECFAC 78
EM MR ++ VYHLECF C
Sbjct: 108 EMTMRVRDKVYHLECFKC 125
>gi|391334316|ref|XP_003741551.1| PREDICTED: LIM domain transcription factor LMO4-A-like [Metaseiulus
occidentalis]
Length = 189
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 70/107 (65%), Gaps = 4/107 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WH CLKC C L ++G++ + K ++ILC+ DY+R+FG+ G CAAC ++IPA
Sbjct: 52 AMDRYWHHSCLKCSLCATPLADIGTSCFFKNDMILCRTDYVRMFGSPGMCAACNQMIPAN 111
Query: 61 EMVMRAKN----NVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 103
+ VMRA + VYH CF+C +C ++ GDR+ L + + CE D
Sbjct: 112 DYVMRAPSMRGGQVYHPTCFSCVKCQNQLKPGDRYNLVNGSLFCEQD 158
>gi|15706308|dbj|BAB68342.1| Cs-LHX3 [Ciona savignyi]
Length = 472
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 45/101 (44%), Positives = 63/101 (62%), Gaps = 6/101 (5%)
Query: 6 WHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMR 65
WH CLKCG C +L + + + + + CK D+ + +GT CA C + IP E+V R
Sbjct: 98 WHAQCLKCGDCGRQLTD---KCFSRGSFVYCKEDFFKRYGTK--CAGCDEAIPPTEVVRR 152
Query: 66 AKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
A+ NVYHLECF C CN + GD+FYL DN+++C+ DYE
Sbjct: 153 AQENVYHLECFRCFMCNDQLGTGDQFYLLDDNRLVCKKDYE 193
>gi|196000094|ref|XP_002109915.1| expressed hypothetical protein [Trichoplax adhaerens]
gi|190588039|gb|EDV28081.1| expressed hypothetical protein, partial [Trichoplax adhaerens]
Length = 119
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 47/102 (46%), Positives = 62/102 (60%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
++D WH +CLKC CC RL +V + Y K+ LILC+RDY+R FG+ G CA C + I
Sbjct: 17 SMDRHWHVNCLKCSCCGIRLDDVATKCYYKSGLILCQRDYIRRFGSGGSCAGCLQAISPD 76
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEY 102
EMV++ YH CF C C R GDRF L + I+CE+
Sbjct: 77 EMVLKLNQRAYHPNCFTCVVCTSRLTSGDRFRLVNGHIVCEH 118
>gi|195119225|ref|XP_002004132.1| GI18740 [Drosophila mojavensis]
gi|193914707|gb|EDW13574.1| GI18740 [Drosophila mojavensis]
Length = 238
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 69/120 (57%), Gaps = 14/120 (11%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WH CLKC CC L +VGS+ + + LILCK+DY +FG++G C+ C + IP
Sbjct: 92 ALDRYWHNSCLKCHCCGAMLADVGSSCFTRRGLILCKKDYSSMFGSSGVCSGCGETIPPS 151
Query: 61 EMVMRA---KNNV-----------YHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EMV +A NN+ +HL CF+C +C GDR+ + ++CE D+ +
Sbjct: 152 EMVAKALTGINNIDLQNQQKQIINFHLRCFSCAKCGSNLRPGDRYTMLGASLVCEQDWHK 211
>gi|443711321|gb|ELU05149.1| hypothetical protein CAPTEDRAFT_228137 [Capitella teleta]
Length = 506
Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats.
Identities = 47/108 (43%), Positives = 65/108 (60%), Gaps = 6/108 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH CL C C+ G + + K + + CK D+ R FGT CA C + IP +
Sbjct: 160 LDRSWHSKCLMCADCN---GHLSDKCFSKGDKVYCKEDFFRRFGTK--CAGCEQGIPPTQ 214
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDN-KILCEYDYEERQ 108
+V RA++NVYHLECFAC C+ + GD FYL D+ K++C+ DYE +
Sbjct: 215 VVRRAQDNVYHLECFACSMCSQQLNTGDEFYLMDDKKLVCKGDYESNK 262
>gi|195050615|ref|XP_001992931.1| GH13372 [Drosophila grimshawi]
gi|193899990|gb|EDV98856.1| GH13372 [Drosophila grimshawi]
Length = 241
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 67/123 (54%), Gaps = 17/123 (13%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WH CLKC CC L +VGS+ + + LILCK+DY +FG++G C C + IP
Sbjct: 92 ALDRYWHNGCLKCHCCGAMLADVGSSCFTRRGLILCKKDYSSMFGSSGVCTGCGETIPPS 151
Query: 61 EMVMRA----KNN-------------VYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 103
EMV +A NN VYHL CF+C +C GDR+ + +CE D
Sbjct: 152 EMVAKALTGINNNIDLQNQQKHIINCVYHLRCFSCAKCGSNLRPGDRYTMLGANPVCEQD 211
Query: 104 YEE 106
+ +
Sbjct: 212 WHK 214
>gi|391347312|ref|XP_003747908.1| PREDICTED: LIM domain only protein 3-like [Metaseiulus
occidentalis]
Length = 136
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/101 (45%), Positives = 63/101 (62%), Gaps = 3/101 (2%)
Query: 5 FWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVM 64
FWH+DCLKC C CRL ++L++K C+ DYLR FG C+ C + I A E+VM
Sbjct: 7 FWHQDCLKCSVCGCRLT---TSLFEKHGAFFCREDYLRKFGVDNQCSGCFEAIQASELVM 63
Query: 65 RAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
R+ ++VYH+ CF C C GDR+ + N++LCE DYE
Sbjct: 64 RSSSHVYHVRCFCCFHCRKGLNTGDRYVISGNRLLCEADYE 104
>gi|195403013|ref|XP_002060090.1| GJ14918 [Drosophila virilis]
gi|194149412|gb|EDW65107.1| GJ14918 [Drosophila virilis]
Length = 240
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 69/122 (56%), Gaps = 16/122 (13%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WH CLKC CC L +VG++ + + LILCK+DY +FG++G C+ C + IP
Sbjct: 92 ALDRYWHNGCLKCHCCGAMLADVGASCFTRRGLILCKKDYSSMFGSSGVCSGCGETIPPS 151
Query: 61 EMVMRA---KNN-------------VYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 104
EMV +A NN V+HL CF+C +C GDR+ + ++CE D+
Sbjct: 152 EMVAKALTGINNIDLQNQQKQIINCVFHLRCFSCAKCGSNLRPGDRYTMLGASLVCEQDW 211
Query: 105 EE 106
+
Sbjct: 212 HK 213
>gi|449478428|ref|XP_002187534.2| PREDICTED: LIM/homeobox protein Lhx3 [Taeniopygia guttata]
Length = 665
Score = 99.4 bits (246), Expect = 5e-19, Method: Composition-based stats.
Identities = 45/105 (42%), Positives = 63/105 (60%), Gaps = 6/105 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH CLKC C +L E + + + + CK D+ + FGT CAAC + IP +
Sbjct: 44 LDRHWHSKCLKCSDCQTQLAE---KCFSRGDGVYCKEDFFKRFGTK--CAACHQGIPPTQ 98
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
+V RA++ VYHL CFAC C + GD FYL D++++C+ DYE
Sbjct: 99 VVRRAQDFVYHLHCFACIVCKRQLATGDEFYLMEDSRLVCKADYE 143
>gi|349603649|gb|AEP99432.1| Rhombotin-2-like protein, partial [Equus caballus]
Length = 92
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 48/84 (57%), Positives = 56/84 (66%)
Query: 23 VGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCN 82
VG LY K LC+RDYLRLFG G CA+C K I A+EM MR K+ VYHLECF C C
Sbjct: 1 VGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQ 60
Query: 83 HRFCVGDRFYLCDNKILCEYDYEE 106
FCVGDR+ L ++ I+CE D E
Sbjct: 61 KHFCVGDRYLLINSDIVCEQDIYE 84
>gi|195339689|ref|XP_002036449.1| GM11938 [Drosophila sechellia]
gi|195473535|ref|XP_002089048.1| GE26318 [Drosophila yakuba]
gi|195578073|ref|XP_002078890.1| GD22293 [Drosophila simulans]
gi|194130329|gb|EDW52372.1| GM11938 [Drosophila sechellia]
gi|194175149|gb|EDW88760.1| GE26318 [Drosophila yakuba]
gi|194190899|gb|EDX04475.1| GD22293 [Drosophila simulans]
Length = 241
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 68/122 (55%), Gaps = 16/122 (13%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WH CLKC CC L EVGS+ + + LILCK+DY +FG +G C+ C + IP
Sbjct: 93 ALDRYWHNGCLKCHCCGAMLAEVGSSCFTRRGLILCKKDYSSMFGCSGVCSGCGETIPPS 152
Query: 61 EMVMRA---KNN-------------VYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 104
E+V +A NN V+HL CF+C +C GDR+ + ++CE D+
Sbjct: 153 ELVAKALTGINNIDLQNQQKQIINCVFHLRCFSCAKCGSSLRPGDRYTMLGASLVCEQDW 212
Query: 105 EE 106
+
Sbjct: 213 HK 214
>gi|24583264|ref|NP_609359.1| CG5708, isoform A [Drosophila melanogaster]
gi|24583266|ref|NP_723534.1| CG5708, isoform B [Drosophila melanogaster]
gi|22946096|gb|AAF52877.2| CG5708, isoform A [Drosophila melanogaster]
gi|22946097|gb|AAN10724.1| CG5708, isoform B [Drosophila melanogaster]
gi|46409202|gb|AAS93758.1| LD11652p [Drosophila melanogaster]
Length = 241
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 68/122 (55%), Gaps = 16/122 (13%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WH CLKC CC L EVGS+ + + LILCK+DY +FG +G C+ C + IP
Sbjct: 93 ALDRYWHNGCLKCHCCGAMLAEVGSSCFTRRGLILCKKDYSSMFGCSGVCSGCGETIPPS 152
Query: 61 EMVMRA---KNN-------------VYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 104
E+V +A NN V+HL CF+C +C GDR+ + ++CE D+
Sbjct: 153 ELVAKALTGINNIDLQNQQKQIINCVFHLRCFSCAKCGSSLRPGDRYTMLGASLVCEQDW 212
Query: 105 EE 106
+
Sbjct: 213 HK 214
>gi|194859624|ref|XP_001969417.1| GG23969 [Drosophila erecta]
gi|190661284|gb|EDV58476.1| GG23969 [Drosophila erecta]
Length = 241
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 68/122 (55%), Gaps = 16/122 (13%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WH CLKC CC L EVGS+ + + LILCK+DY +FG +G C+ C + IP
Sbjct: 93 ALDRYWHNGCLKCHCCGAMLAEVGSSCFTRRGLILCKKDYSSMFGCSGVCSGCGETIPPS 152
Query: 61 EMVMRA---KNN-------------VYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 104
E+V +A NN V+HL CF+C +C GDR+ + ++CE D+
Sbjct: 153 ELVAKALTGINNIDLQNQQKQIINCVFHLRCFSCAKCGSSLRPGDRYTMLGASLVCEQDW 212
Query: 105 EE 106
+
Sbjct: 213 HK 214
>gi|125986810|ref|XP_001357168.1| GA19074 [Drosophila pseudoobscura pseudoobscura]
gi|195146774|ref|XP_002014359.1| GL19153 [Drosophila persimilis]
gi|54645497|gb|EAL34236.1| GA19074 [Drosophila pseudoobscura pseudoobscura]
gi|194106312|gb|EDW28355.1| GL19153 [Drosophila persimilis]
Length = 241
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 68/122 (55%), Gaps = 16/122 (13%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WH CLKC CC L EVGS+ + + LILCK+DY +FG +G C+ C + IP
Sbjct: 93 ALDRYWHNGCLKCHCCGAMLAEVGSSCFTRRGLILCKKDYSSMFGCSGVCSGCGETIPPS 152
Query: 61 EMVMRA---KNN-------------VYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 104
E+V +A NN V+HL CF+C +C GDR+ + ++CE D+
Sbjct: 153 ELVAKALTGINNIDIQSQQKQIINCVFHLRCFSCAKCGSSLRPGDRYTMLGASLVCEQDW 212
Query: 105 EE 106
+
Sbjct: 213 HK 214
>gi|194761684|ref|XP_001963058.1| GF14129 [Drosophila ananassae]
gi|190616755|gb|EDV32279.1| GF14129 [Drosophila ananassae]
Length = 241
Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 68/122 (55%), Gaps = 16/122 (13%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WH CLKC CC L EVGS+ + + LILCK+DY +FG +G C+ C + IP
Sbjct: 93 ALDRYWHNGCLKCHCCGAMLAEVGSSCFTRRGLILCKKDYSSMFGCSGVCSGCGETIPPS 152
Query: 61 EMVMRA---KNN-------------VYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 104
E+V +A NN V+HL CF+C +C GDR+ + ++CE D+
Sbjct: 153 ELVAKALTGINNIDLQNQQKQIINCVFHLRCFSCAKCGSSLRPGDRYTMLGASLVCEQDW 212
Query: 105 EE 106
+
Sbjct: 213 HK 214
>gi|259013380|ref|NP_001158395.1| lim domain homeobox 3/4 transcription factor [Saccoglossus
kowalevskii]
gi|90659991|gb|ABD97272.1| lim domain homeobox 3/4 transcription factor [Saccoglossus
kowalevskii]
Length = 390
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 66/108 (61%), Gaps = 6/108 (5%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
D WH CLKC C +L + Y + + CK D+ + FGT C+AC + IP ++
Sbjct: 52 DRAWHSKCLKCTDCQAQLSD---KCYSRGGQVYCKEDFFKRFGTK--CSACDQGIPPTQV 106
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYEERQV 109
V RA++NVYHL+CFAC CN + GD FYL DNK++C+ DYE +V
Sbjct: 107 VRRAQDNVYHLQCFACVMCNRQLATGDEFYLMNDNKLVCKGDYEAAKV 154
>gi|391339813|ref|XP_003744241.1| PREDICTED: sodium-coupled monocarboxylate transporter 1-like
[Metaseiulus occidentalis]
Length = 707
Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 44/101 (43%), Positives = 63/101 (62%), Gaps = 3/101 (2%)
Query: 6 WHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMR 65
WH DCL+C CDC L E ST + + N + CK+DY R FG C+ CT+ I + + V R
Sbjct: 475 WHVDCLRCCVCDCLL-EKDSTCFFRDNNVYCKQDYARQFGVR--CSKCTRGIQSSDWVRR 531
Query: 66 AKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
A++ VYHL CFAC++C + G+ F L D ++LC+ + E
Sbjct: 532 ARDQVYHLACFACEECKRQLSTGEEFALHDGRVLCKIHFCE 572
>gi|306526228|sp|Q25132.2|LHX3_HALRO RecName: Full=LIM/homeobox protein Lhx3; Short=Hr-Lhx3; Short=LIM
homeobox protein 3; AltName: Full=LIM/homeobox protein
LIM; Short=HrLIM
Length = 692
Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 44/102 (43%), Positives = 62/102 (60%), Gaps = 6/102 (5%)
Query: 6 WHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMR 65
WH LKC C +L E + + NL+ CK D+ + FGT C AC IP E++ R
Sbjct: 302 WHSQGLKCNDCSAQLSE---KCFSRGNLVFCKDDFFKRFGTK--CTACGHGIPPTEVIRR 356
Query: 66 AKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYEE 106
A++NVYHLE F C C+ + GD+FYL DN+++C+ DYE+
Sbjct: 357 AQDNVYHLEGFCCFLCHEKMGTGDQFYLLEDNRLVCKKDYEQ 398
>gi|236201759|dbj|BAH58772.1| LIM homeodomain protein Hr-Lhx3 b-form [Halocynthia roretzi]
Length = 611
Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 44/102 (43%), Positives = 62/102 (60%), Gaps = 6/102 (5%)
Query: 6 WHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMR 65
WH LKC C +L E + + NL+ CK D+ + FGT C AC IP E++ R
Sbjct: 221 WHSQGLKCNDCSAQLSE---KCFSRGNLVFCKDDFFKRFGTK--CTACGHGIPPTEVIRR 275
Query: 66 AKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYEE 106
A++NVYHLE F C C+ + GD+FYL DN+++C+ DYE+
Sbjct: 276 AQDNVYHLEGFCCFLCHEKMGTGDQFYLLEDNRLVCKKDYEQ 317
>gi|345325463|ref|XP_003430923.1| PREDICTED: hypothetical protein LOC100085508 [Ornithorhynchus
anatinus]
Length = 884
Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 44/105 (41%), Positives = 62/105 (59%), Gaps = 6/105 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH CLKC C +L + + +A + CK D+ + FGT C AC + IP +
Sbjct: 596 LDRHWHGSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFKRFGTK--CTACQQGIPPTQ 650
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
+V +A++ VYHL CFAC CN + GD FYL D +++C+ DYE
Sbjct: 651 VVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYE 695
>gi|397508667|ref|XP_003824769.1| PREDICTED: LIM/homeobox protein Lhx4 [Pan paniscus]
gi|410034179|ref|XP_524984.3| PREDICTED: LIM/homeobox protein Lhx4 [Pan troglodytes]
Length = 466
Score = 96.3 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 44/105 (41%), Positives = 62/105 (59%), Gaps = 6/105 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH CLKC C +L + + +A + CK D+ + FGT C AC + IP +
Sbjct: 122 LDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFKRFGTK--CTACQQGIPPTQ 176
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
+V +A++ VYHL CFAC CN + GD FYL D +++C+ DYE
Sbjct: 177 VVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYE 221
>gi|118343872|ref|NP_001071755.1| LIM/homeobox protein Lhx3a type 1 [Ciona intestinalis]
gi|70570105|dbj|BAE06537.1| transcription factor protein [Ciona intestinalis]
Length = 596
Score = 95.5 bits (236), Expect = 6e-18, Method: Composition-based stats.
Identities = 41/101 (40%), Positives = 62/101 (61%), Gaps = 6/101 (5%)
Query: 6 WHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMR 65
WH CLKC C +L + + + + + CK D+ + FGT C+ C IP ++V R
Sbjct: 215 WHSQCLKCNDCGRQLTD---KCFSRGSYVYCKEDFFKRFGTK--CSGCELAIPPTQVVRR 269
Query: 66 AKNNVYHLECFACQQCNHRFCVGDRFYLCDN-KILCEYDYE 105
A++NVYHLECF C C+ + GD+FYL D+ +++C+ DYE
Sbjct: 270 AQDNVYHLECFRCFMCSEQLGTGDQFYLLDDSRLVCKKDYE 310
>gi|392340262|ref|XP_003754026.1| PREDICTED: LIM domain only protein 3-like [Rattus norvegicus]
Length = 114
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 58/106 (54%), Gaps = 42/106 (39%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYL
Sbjct: 39 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYL------------------- 79
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
RFCVGD+F+L +N ILC+ DYEE
Sbjct: 80 -----------------------RFCVGDKFFLKNNMILCQTDYEE 102
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 50 CAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFC-VGDRFYLCDNKILCEYDYEERQ 108
CA C + I +++A + +H +C C C+ R VG Y N ILC DY
Sbjct: 24 CAGCNRKIKD-RYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLR-- 80
Query: 109 VFCVGDRFYLCDNKILCEYDYEE 131
FCVGD+F+L +N ILC+ DYEE
Sbjct: 81 -FCVGDKFFLKNNMILCQTDYEE 102
>gi|340376253|ref|XP_003386648.1| PREDICTED: LIM/homeobox protein Lhx3-like [Amphimedon
queenslandica]
Length = 338
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 66/114 (57%), Gaps = 6/114 (5%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
D WH CL+C C C+L + Y ++ + CK D+ + FGT CA C + IP ++
Sbjct: 110 DKSWHAKCLRCSDCQCQLSD---KCYSRSGQVYCKDDFSKRFGT--RCAGCQQPIPPTQV 164
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDN-KILCEYDYEERQVFCVGDR 115
V RA+ NVYHL+CFAC C + GD FYL D+ K++C+ DYE + G +
Sbjct: 165 VRRAQENVYHLQCFACFICQRQLSTGDEFYLMDDRKLVCKADYEAAKARADGSQ 218
>gi|167859587|gb|ACA04748.1| Lim3 [Amphimedon queenslandica]
Length = 338
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 66/114 (57%), Gaps = 6/114 (5%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
D WH CL+C C C+L + Y ++ + CK D+ + FGT CA C + IP ++
Sbjct: 110 DKSWHAKCLRCSDCQCQLSD---KCYSRSGQVYCKDDFSKRFGT--RCAGCQQPIPPTQV 164
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDN-KILCEYDYEERQVFCVGDR 115
V RA+ NVYHL+CFAC C + GD FYL D+ K++C+ DYE + G +
Sbjct: 165 VRRAQENVYHLQCFACFICQRQLSTGDEFYLMDDRKLVCKADYEAAKARADGSQ 218
>gi|148678644|gb|EDL10591.1| mCG11664 [Mus musculus]
gi|149049118|gb|EDM01572.1| rCG30144 [Rattus norvegicus]
Length = 103
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 58/106 (54%), Gaps = 42/106 (39%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYL
Sbjct: 28 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYL------------------- 68
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
RFCVGD+F+L +N ILC+ DYEE
Sbjct: 69 -----------------------RFCVGDKFFLKNNMILCQTDYEE 91
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 50 CAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFC-VGDRFYLCDNKILCEYDYEERQ 108
CA C + I +++A + +H +C C C+ R VG Y N ILC DY
Sbjct: 13 CAGCNRKIKD-RYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLR-- 69
Query: 109 VFCVGDRFYLCDNKILCEYDYEE 131
FCVGD+F+L +N ILC+ DYEE
Sbjct: 70 -FCVGDKFFLKNNMILCQTDYEE 91
>gi|312374311|gb|EFR21889.1| hypothetical protein AND_16082 [Anopheles darlingi]
Length = 568
Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats.
Identities = 42/104 (40%), Positives = 61/104 (58%), Gaps = 6/104 (5%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
D WH CL+C C +L E + + + CK D+ + +GT CAAC IP ++
Sbjct: 192 DRTWHAKCLQCSECRVQLNE---KCFARNGQLFCKDDFFKRYGTK--CAACDLGIPPTQV 246
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
V RA++NVYHL+CF C C+ + GD +YL D K++C+ DYE
Sbjct: 247 VRRAQDNVYHLQCFMCSMCSRQLNTGDEYYLMEDCKLICKPDYE 290
>gi|351702111|gb|EHB05030.1| LIM/homeobox protein Lhx2 [Heterocephalus glaber]
Length = 502
Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 47/106 (44%), Positives = 58/106 (54%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 180 AVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF-SVQRCARCHLGISA 236
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA++ VYHL CF C CN GD F + D+ + C +E
Sbjct: 237 SEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFE 282
>gi|390335971|ref|XP_780701.3| PREDICTED: LIM/homeobox protein Lhx3-like [Strongylocentrotus
purpuratus]
Length = 545
Score = 92.0 bits (227), Expect = 8e-17, Method: Composition-based stats.
Identities = 42/105 (40%), Positives = 61/105 (58%), Gaps = 6/105 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
+D WH CL+C C+ +L + + + + CK D+ + FGT C++C K I E
Sbjct: 163 VDRAWHAKCLRCVDCNAQLTD---RCFSRDGGVFCKEDFFKRFGTK--CSSCEKGIAPTE 217
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYL-CDNKILCEYDYE 105
+V RA +NVYHL CF C C + GD F+L DNK++C+ DYE
Sbjct: 218 IVRRALDNVYHLHCFCCIICTRQLSTGDEFFLMTDNKLVCKQDYE 262
>gi|431921900|gb|ELK19103.1| LIM/homeobox protein Lhx9 [Pteropus alecto]
Length = 479
Score = 91.7 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 47/106 (44%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 168 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 224
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA+++VYHL CF C CN GD F + D+ + C +E
Sbjct: 225 SEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFE 270
>gi|328787176|ref|XP_392622.4| PREDICTED: protein apterous [Apis mellifera]
Length = 560
Score = 91.7 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 45/106 (42%), Positives = 60/106 (56%), Gaps = 3/106 (2%)
Query: 1 ALDLFWHEDCLKCGCCDCRL-GEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CL+C C L GEV T + + I CK+DY R+FG+ CA C I A
Sbjct: 203 AVDRRWHAACLQCSHCRQGLDGEV--TCFSRDGNIYCKKDYYRMFGSMKRCARCHAAILA 260
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
E+VMRA++ V+H+ CF+C C GD F + D +LC YE
Sbjct: 261 SELVMRARDLVFHVRCFSCAACAVPLTKGDHFGMRDGAVLCRLHYE 306
>gi|24585132|ref|NP_724161.1| Lim3, isoform B [Drosophila melanogaster]
gi|386769865|ref|NP_001246085.1| Lim3, isoform C [Drosophila melanogaster]
gi|386769867|ref|NP_001246086.1| Lim3, isoform D [Drosophila melanogaster]
gi|386769871|ref|NP_001246088.1| Lim3, isoform F [Drosophila melanogaster]
gi|22946804|gb|AAF53758.2| Lim3, isoform B [Drosophila melanogaster]
gi|124248338|gb|ABM92789.1| FI01025p [Drosophila melanogaster]
gi|383291570|gb|AFH03759.1| Lim3, isoform C [Drosophila melanogaster]
gi|383291571|gb|AFH03760.1| Lim3, isoform D [Drosophila melanogaster]
gi|383291573|gb|AFH03762.1| Lim3, isoform F [Drosophila melanogaster]
Length = 520
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 42/106 (39%), Positives = 62/106 (58%), Gaps = 6/106 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
L+ WH CL+C C G++ + + + CK D+ + +GT C+AC IP +
Sbjct: 138 LERTWHAKCLQCSECH---GQLNDKCFARNGQLFCKEDFFKRYGTK--CSACDMGIPPTQ 192
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYEE 106
+V RA++NVYHL+CF C C+ GD FYL D K++C+ DYEE
Sbjct: 193 VVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICKRDYEE 238
>gi|195345019|ref|XP_002039073.1| GM17030 [Drosophila sechellia]
gi|194134203|gb|EDW55719.1| GM17030 [Drosophila sechellia]
Length = 523
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 42/106 (39%), Positives = 62/106 (58%), Gaps = 6/106 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
L+ WH CL+C C G++ + + + CK D+ + +GT C+AC IP +
Sbjct: 143 LERTWHAKCLQCSECH---GQLNDKCFARNGQLFCKEDFFKRYGTK--CSACDMGIPPTQ 197
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYEE 106
+V RA++NVYHL+CF C C+ GD FYL D K++C+ DYEE
Sbjct: 198 VVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICKRDYEE 243
>gi|225581041|gb|ACN94618.1| GA10505 [Drosophila miranda]
Length = 499
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 42/106 (39%), Positives = 62/106 (58%), Gaps = 6/106 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
L+ WH CL+C C G++ + + + CK D+ + +GT C+AC IP +
Sbjct: 114 LERTWHAKCLQCSECH---GQLNDKCFARNGQLFCKEDFFKRYGTK--CSACDMGIPPTQ 168
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYEE 106
+V RA++NVYHL+CF C C+ GD FYL D K++C+ DYEE
Sbjct: 169 VVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICKRDYEE 214
>gi|442628307|ref|NP_001260559.1| Lim3, isoform G [Drosophila melanogaster]
gi|440213916|gb|AGB93094.1| Lim3, isoform G [Drosophila melanogaster]
Length = 555
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 42/106 (39%), Positives = 62/106 (58%), Gaps = 6/106 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
L+ WH CL+C C G++ + + + CK D+ + +GT C+AC IP +
Sbjct: 138 LERTWHAKCLQCSECH---GQLNDKCFARNGQLFCKEDFFKRYGTK--CSACDMGIPPTQ 192
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYEE 106
+V RA++NVYHL+CF C C+ GD FYL D K++C+ DYEE
Sbjct: 193 VVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICKRDYEE 238
>gi|383850854|ref|XP_003700989.1| PREDICTED: protein apterous-like [Megachile rotundata]
Length = 620
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 45/106 (42%), Positives = 60/106 (56%), Gaps = 3/106 (2%)
Query: 1 ALDLFWHEDCLKCGCCDCRL-GEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CL+C C L GEV T + + I CK+DY R+FG+ CA C I A
Sbjct: 260 AVDRRWHAACLQCSHCRQGLDGEV--TCFSRDGNIYCKKDYYRMFGSMKRCARCQAAILA 317
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
E+VMRA++ V+H+ CF+C C GD F + D +LC YE
Sbjct: 318 SELVMRARDLVFHVRCFSCAACAVPLTKGDHFGMRDGAVLCRLHYE 363
>gi|49659006|emb|CAD37944.1| homeobox protein LHX [Suberites domuncula]
Length = 342
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 63/105 (60%), Gaps = 6/105 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH CL+C CD L + Y + + CK D+ R FGT CA C + IP +
Sbjct: 135 LDKPWHSKCLRCVDCDMLLTD---KCYSRDGEVFCKADFSRRFGT--RCAGCNQPIPPTQ 189
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDN-KILCEYDYE 105
+V RA+ NVYHL+CFAC C+ + GD FYL D+ K++C+ DYE
Sbjct: 190 VVRRAQENVYHLQCFACFICSRQLSTGDEFYLMDDKKLVCKADYE 234
>gi|229619792|dbj|BAH58094.1| LIM homeobox protein 3 [Hemicentrotus pulcherrimus]
Length = 485
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 42/105 (40%), Positives = 61/105 (58%), Gaps = 6/105 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
+D WH CL+C C+ +L + + + + CK D+ + FGT C++C K I E
Sbjct: 103 VDRAWHAKCLRCVDCNAQLTD---RCFSRDGGVFCKEDFFKRFGTK--CSSCEKGIAPTE 157
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYL-CDNKILCEYDYE 105
+V RA +NVYHL CF C C + GD F+L DNK++C+ DYE
Sbjct: 158 IVRRALDNVYHLHCFCCIICTRQLSTGDEFFLMTDNKLVCKQDYE 202
>gi|380027050|ref|XP_003697249.1| PREDICTED: protein apterous-like [Apis florea]
Length = 555
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 45/106 (42%), Positives = 59/106 (55%), Gaps = 3/106 (2%)
Query: 1 ALDLFWHEDCLKCGCCDCRL-GEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CL+C C L GEV T + + I CK+DY R+FG+ CA C I A
Sbjct: 201 AVDRRWHAACLQCSHCRQGLDGEV--TCFSRDGNIYCKKDYYRMFGSMKRCARCHAAILA 258
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
E+VMRA+ V+H+ CF+C C GD F + D +LC YE
Sbjct: 259 SELVMRARELVFHVRCFSCAACAVPLTKGDHFGMRDGAVLCRLHYE 304
>gi|350404757|ref|XP_003487210.1| PREDICTED: protein apterous-like [Bombus impatiens]
Length = 550
Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 45/106 (42%), Positives = 60/106 (56%), Gaps = 3/106 (2%)
Query: 1 ALDLFWHEDCLKCGCCDCRL-GEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CL+C C L GEV T + + I CK+DY R+FG+ CA C I A
Sbjct: 190 AVDRRWHAACLQCSHCRQGLDGEV--TCFSRDGNIYCKKDYYRMFGSMKRCARCHAAILA 247
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
E+VMRA++ V+H+ CF+C C GD F + D +LC YE
Sbjct: 248 SELVMRARDLVFHVRCFSCAACAVPLTKGDHFGMRDGAVLCRLHYE 293
>gi|195398039|ref|XP_002057632.1| GJ17996 [Drosophila virilis]
gi|194141286|gb|EDW57705.1| GJ17996 [Drosophila virilis]
Length = 545
Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 42/106 (39%), Positives = 62/106 (58%), Gaps = 6/106 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
L+ WH CL+C C +L + + + + CK D+ + +GT C+AC IP +
Sbjct: 142 LERTWHAKCLQCSECHAQLND---KCFARNGQLFCKEDFFKRYGTK--CSACDMGIPPTQ 196
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYEE 106
+V RA++NVYHL+CF C C+ GD FYL D K++C+ DYEE
Sbjct: 197 VVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICKRDYEE 242
>gi|72535130|ref|NP_001025506.1| LIM/homeobox protein Lhx3 [Gallus gallus]
gi|1708828|sp|P53412.1|LHX3_CHICK RecName: Full=LIM/homeobox protein Lhx3; Short=LIM homeobox protein
3; AltName: Full=Homeobox protein LIM-3
gi|531185|gb|AAA62174.1| amino acid feature: LIM1, bp 82 .. 225; amino acid feature: LIM2,
bp 259 .. 414; amino acid feature: homeodomain, bp 457
.. 636 [Gallus gallus]
Length = 395
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 63/105 (60%), Gaps = 6/105 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH CLKC C +L E + + + + CK D+ + FGT CAAC + IP +
Sbjct: 44 LDRHWHSKCLKCSDCQTQLAE---KCFSRGDGVYCKEDFFKRFGTK--CAACQQGIPPTQ 98
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
+V RA++ VYHL CFAC C + GD FYL D++++C+ DYE
Sbjct: 99 VVRRAQDFVYHLHCFACIVCKRQLATGDEFYLMEDSRLVCKADYE 143
>gi|326923371|ref|XP_003207910.1| PREDICTED: LIM/homeobox protein Lhx3-like [Meleagris gallopavo]
Length = 399
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 63/105 (60%), Gaps = 6/105 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH CLKC C +L E + + + + CK D+ + FGT CAAC + IP +
Sbjct: 48 LDRHWHSKCLKCSDCQTQLAE---KCFSRGDGVYCKEDFFKRFGTK--CAACQQGIPPTQ 102
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
+V RA++ VYHL CFAC C + GD FYL D++++C+ DYE
Sbjct: 103 VVRRAQDFVYHLHCFACIVCKRQLATGDEFYLMEDSRLVCKADYE 147
>gi|332018691|gb|EGI59263.1| Protein apterous [Acromyrmex echinatior]
Length = 558
Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 45/106 (42%), Positives = 59/106 (55%), Gaps = 3/106 (2%)
Query: 1 ALDLFWHEDCLKCGCCDCRL-GEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CL+C C L GEV T + + I CK+DY R+FG+ CA C I A
Sbjct: 199 AVDKRWHAACLQCSHCRQGLDGEV--TCFSRDGNIYCKKDYYRMFGSMKRCARCQAAILA 256
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
E+VMRA+ V+H+ CF+C C GD F + D +LC YE
Sbjct: 257 SELVMRARELVFHVRCFSCAACAVLLMKGDHFGMRDGAVLCRLHYE 302
>gi|47225657|emb|CAG08000.1| unnamed protein product [Tetraodon nigroviridis]
Length = 363
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 62/105 (59%), Gaps = 6/105 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH CLKC C L + + +A + CK D+ + FGT CA+C K IP +
Sbjct: 21 LDRHWHSKCLKCADCQTPLAD---KCFSRAGSVYCKEDFFKRFGTK--CASCQKGIPPMQ 75
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
+V +A++ VYHL CFAC C+ + GD FYL D +++C+ DYE
Sbjct: 76 VVRKAQDFVYHLHCFACIMCSRQLATGDEFYLMEDGRLVCKVDYE 120
>gi|328707561|ref|XP_003243430.1| PREDICTED: insulin gene enhancer protein isl-1-like isoform 2
[Acyrthosiphon pisum]
Length = 487
Score = 89.4 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 46/105 (43%), Positives = 58/105 (55%), Gaps = 3/105 (2%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A DL WH CLKC C L E T + + CK DY+RLFGT C C
Sbjct: 92 APDLEWHAACLKCAECHQFLDE-HCTCFVRDGKTYCKLDYVRLFGTK--CDKCNLSFDRT 148
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
E+VMRAK VYH+ECF C C+ + GD F L D+ +LC+ D++
Sbjct: 149 ELVMRAKTKVYHMECFRCNACSRQLIPGDEFALRDDTLLCKQDHD 193
>gi|410903462|ref|XP_003965212.1| PREDICTED: LIM/homeobox protein Lhx3-like isoform 2 [Takifugu
rubripes]
Length = 406
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 63/105 (60%), Gaps = 6/105 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH CLKC C +L E + + + + CK D+ + FGT CAAC + IP +
Sbjct: 51 LDRHWHSKCLKCSDCQAQLAE---KCFSRGDSVYCKEDFFKRFGTK--CAACQQGIPPTQ 105
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
+V RA++ VYHL CFAC C + GD +YL D++++C+ DYE
Sbjct: 106 VVRRAQDFVYHLHCFACIVCKRQLATGDEYYLMEDSRLVCKTDYE 150
>gi|410903460|ref|XP_003965211.1| PREDICTED: LIM/homeobox protein Lhx3-like isoform 1 [Takifugu
rubripes]
Length = 399
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 63/105 (60%), Gaps = 6/105 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH CLKC C +L E + + + + CK D+ + FGT CAAC + IP +
Sbjct: 44 LDRHWHSKCLKCSDCQAQLAE---KCFSRGDSVYCKEDFFKRFGTK--CAACQQGIPPTQ 98
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
+V RA++ VYHL CFAC C + GD +YL D++++C+ DYE
Sbjct: 99 VVRRAQDFVYHLHCFACIVCKRQLATGDEYYLMEDSRLVCKTDYE 143
>gi|195164566|ref|XP_002023117.1| GL21131 [Drosophila persimilis]
gi|194105202|gb|EDW27245.1| GL21131 [Drosophila persimilis]
Length = 490
Score = 89.4 bits (220), Expect = 5e-16, Method: Composition-based stats.
Identities = 41/106 (38%), Positives = 62/106 (58%), Gaps = 6/106 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
L+ WH CL+C C G++ + + + CK D+ + +GT C+AC IP +
Sbjct: 114 LERTWHAKCLQCSECH---GQLNDKCFARNGQLFCKEDFFKRYGTK--CSACDMGIPPTQ 168
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYEE 106
+V RA+++VYHL+CF C C+ GD FYL D K++C+ DYEE
Sbjct: 169 VVRRAQDHVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICKRDYEE 214
>gi|410921836|ref|XP_003974389.1| PREDICTED: LIM/homeobox protein Lhx9-like [Takifugu rubripes]
Length = 506
Score = 89.4 bits (220), Expect = 5e-16, Method: Composition-based stats.
Identities = 47/106 (44%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 195 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 251
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA+++VYHL CF C CN GD F + D+ + C +E
Sbjct: 252 SEMVMRARDSVYHLSCFTCTTCNKTLTTGDHFGMKDSLVYCRLHFE 297
>gi|380806861|gb|AFE75306.1| rhombotin-1, partial [Macaca mulatta]
Length = 76
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/46 (89%), Positives = 43/46 (93%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGT 46
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLRLFGT
Sbjct: 31 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGT 76
>gi|156390719|ref|XP_001635417.1| predicted protein [Nematostella vectensis]
gi|156222511|gb|EDO43354.1| predicted protein [Nematostella vectensis]
Length = 253
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 66/106 (62%), Gaps = 2/106 (1%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D WH DCLKC C+ RL + T + K +ILC+ DY R F + C++C++ I +
Sbjct: 24 AVDQEWHADCLKCSDCELRL-DNELTCFSKDGVILCREDYYRRF-SVKKCSSCSQAISSK 81
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
E+VMRA++ VYH+ CFAC +C G+ F + +I C+ DYEE
Sbjct: 82 ELVMRARDQVYHVNCFACDRCKRMLATGEYFGMRGIRIYCKEDYEE 127
>gi|345487077|ref|XP_001599660.2| PREDICTED: hypothetical protein LOC100114734 [Nasonia vitripennis]
Length = 644
Score = 89.4 bits (220), Expect = 5e-16, Method: Composition-based stats.
Identities = 44/106 (41%), Positives = 60/106 (56%), Gaps = 3/106 (2%)
Query: 1 ALDLFWHEDCLKCGCCDCRL-GEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CL+C C L GEV T + + I CK+DY R+FG+ CA C I A
Sbjct: 254 AVDRRWHASCLQCSHCRQGLDGEV--TCFSREGNIYCKKDYYRMFGSMKRCARCQAAILA 311
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
E+VMRA+ V+H+ CF+C C+ GD F + + +LC YE
Sbjct: 312 SELVMRARELVFHVRCFSCAACSVPLTKGDHFGMREGAVLCRLHYE 357
>gi|410903464|ref|XP_003965213.1| PREDICTED: LIM/homeobox protein Lhx3-like isoform 3 [Takifugu
rubripes]
Length = 390
Score = 89.0 bits (219), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 63/105 (60%), Gaps = 6/105 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH CLKC C +L E + + + + CK D+ + FGT CAAC + IP +
Sbjct: 35 LDRHWHSKCLKCSDCQAQLAE---KCFSRGDSVYCKEDFFKRFGTK--CAACQQGIPPTQ 89
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
+V RA++ VYHL CFAC C + GD +YL D++++C+ DYE
Sbjct: 90 VVRRAQDFVYHLHCFACIVCKRQLATGDEYYLMEDSRLVCKTDYE 134
>gi|198473411|ref|XP_001356286.2| GA10505 [Drosophila pseudoobscura pseudoobscura]
gi|198139444|gb|EAL33349.2| GA10505 [Drosophila pseudoobscura pseudoobscura]
Length = 491
Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 41/106 (38%), Positives = 62/106 (58%), Gaps = 6/106 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
L+ WH CL+C C G++ + + + CK D+ + +GT C+AC IP +
Sbjct: 115 LERTWHAKCLQCSECH---GQLNDKCFARNGQLFCKEDFFKRYGTK--CSACDMGIPPTQ 169
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYEE 106
+V RA+++VYHL+CF C C+ GD FYL D K++C+ DYEE
Sbjct: 170 VVRRAQDHVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICKRDYEE 215
>gi|114627512|ref|XP_001171089.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Pan troglodytes]
Length = 402
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 61/106 (57%), Gaps = 6/106 (5%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD WH CLKC C L E + + + CK D+ R FGT CAAC IP
Sbjct: 51 ALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCKDDFFRRFGTK--CAACQLGIPPT 105
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
++V RA++ VYHL CFAC C + GD FYL D++++C+ DYE
Sbjct: 106 QVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYE 151
>gi|301608740|ref|XP_002933954.1| PREDICTED: LIM homeobox transcription factor 1-beta-like [Xenopus
(Silurana) tropicalis]
Length = 533
Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 42/106 (39%), Positives = 58/106 (54%), Gaps = 5/106 (4%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
D WHE C+KC C L + T Y + + CK DY +LF T C +C K + E+
Sbjct: 203 DRSWHECCVKCAAC---LQILSGTCYYRNRQLYCKEDYDKLFATK--CNSCLKTVLPSEL 257
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQ 108
+MR +NVYH+ CF C +C R GD F L + ++LC DYE +
Sbjct: 258 IMRVLSNVYHVACFFCCECERRLERGDEFVLKEGQLLCRSDYEREK 303
>gi|143347423|gb|ABO93221.1| Islet [Platynereis dumerilii]
Length = 414
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 61/105 (58%), Gaps = 3/105 (2%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A DL WH CLKC CD L E T + + CKRDY RLFGT CA CT+
Sbjct: 38 APDLEWHAACLKCADCDQFLDET-CTCFVREGKTYCKRDYARLFGTK--CARCTESFSKN 94
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
+ VMRA+N +YH++CF C C+ + GD F L D+ + C+ D+E
Sbjct: 95 DFVMRARNKIYHIDCFRCVACSRQLIPGDEFALRDDGLFCKSDHE 139
>gi|332833327|ref|XP_003312450.1| PREDICTED: LIM/homeobox protein Lhx3 [Pan troglodytes]
Length = 396
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 78/157 (49%), Gaps = 15/157 (9%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD WH CLKC C L E + + + CK D+ R FGT CAAC IP
Sbjct: 45 ALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCKDDFFRRFGTK--CAACQLGIPPT 99
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE---ERQVFCVGDRF 116
++V RA++ VYHL CFAC C + GD FYL D++++C+ DYE +R+ R
Sbjct: 100 QVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKR- 158
Query: 117 YLCDNKILCEYDYEERQVFANIAYNPSSLAHLRRQVT 153
+ E + N + P+ H+R Q++
Sbjct: 159 ---PRTTITAKQLETLKSAYNTSPKPAR--HVREQLS 190
>gi|114627514|ref|XP_001171072.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Pan troglodytes]
Length = 397
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 78/157 (49%), Gaps = 15/157 (9%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD WH CLKC C L E + + + CK D+ R FGT CAAC IP
Sbjct: 46 ALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCKDDFFRRFGTK--CAACQLGIPPT 100
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE---ERQVFCVGDRF 116
++V RA++ VYHL CFAC C + GD FYL D++++C+ DYE +R+ R
Sbjct: 101 QVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKR- 159
Query: 117 YLCDNKILCEYDYEERQVFANIAYNPSSLAHLRRQVT 153
+ E + N + P+ H+R Q++
Sbjct: 160 ---PRTTITAKQLETLKSAYNTSPKPAR--HVREQLS 191
>gi|371573886|gb|AEX38313.1| Lhx3 [Mnemiopsis leidyi]
Length = 507
Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 38/101 (37%), Positives = 58/101 (57%), Gaps = 6/101 (5%)
Query: 6 WHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMR 65
WH CLKC C L ++ + + + + CK D+ + +GT CA C KVIP ++V R
Sbjct: 146 WHSACLKCHDC---LAQLTDKCFSRGDFVYCKDDFYKRYGTK--CAKCEKVIPPSQVVRR 200
Query: 66 AKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
A +V+H++CF C C+ GD FY DN+++C DY+
Sbjct: 201 AGGHVFHMDCFVCIICSRTLNTGDEFYFVDDNQLVCRSDYD 241
>gi|397492170|ref|XP_003817001.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 3 [Pan paniscus]
Length = 377
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 61/106 (57%), Gaps = 6/106 (5%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD WH CLKC C L E + + + CK D+ R FGT CAAC IP
Sbjct: 22 ALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCKDDFFRRFGTK--CAACQLGIPPT 76
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
++V RA++ VYHL CFAC C + GD FYL D++++C+ DYE
Sbjct: 77 QVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYE 122
>gi|397492168|ref|XP_003817000.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Pan paniscus]
Length = 390
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 61/106 (57%), Gaps = 6/106 (5%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD WH CLKC C L E + + + CK D+ R FGT CAAC IP
Sbjct: 35 ALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCKDDFFRRFGTK--CAACQLGIPPT 89
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
++V RA++ VYHL CFAC C + GD FYL D++++C+ DYE
Sbjct: 90 QVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYE 135
>gi|397492166|ref|XP_003816999.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Pan paniscus]
Length = 401
Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 61/106 (57%), Gaps = 6/106 (5%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD WH CLKC C L E + + + CK D+ R FGT CAAC IP
Sbjct: 46 ALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCKDDFFRRFGTK--CAACQLGIPPT 100
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
++V RA++ VYHL CFAC C + GD FYL D++++C+ DYE
Sbjct: 101 QVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYE 146
>gi|410921498|ref|XP_003974220.1| PREDICTED: LIM/homeobox protein Lhx4-like [Takifugu rubripes]
Length = 389
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 62/105 (59%), Gaps = 6/105 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH CLKC C L + + +A + CK D+ + FGT CA+C + IP +
Sbjct: 47 LDRHWHSKCLKCADCQTPLAD---KCFSRAGSVYCKEDFFKRFGTK--CASCQQGIPPMQ 101
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
+V +A++ VYHL CFAC C+ + GD FYL D +++C+ DYE
Sbjct: 102 VVRKAQDFVYHLHCFACIMCSRQLATGDEFYLMEDGRLVCKVDYE 146
>gi|157115167|ref|XP_001652548.1| lim homeobox protein [Aedes aegypti]
gi|108876992|gb|EAT41217.1| AAEL007120-PA [Aedes aegypti]
Length = 459
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 80/162 (49%), Gaps = 20/162 (12%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
D WH CL+C C +L E + + + CK D+ + +GT CAAC IP ++
Sbjct: 80 DRTWHAKCLQCSDCHIQLNE---KCFARNGQLFCKDDFFKRYGTK--CAACDLGIPPTQV 134
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYEERQVFCVGDRFYLCDN 121
V RA++NVYHL+CF C C+ + GD FYL D K++C+ DYE + + YL D
Sbjct: 135 VRRAQDNVYHLQCFMCSMCSRQLNTGDEFYLIEDGKLICKPDYEAAKAKGL----YLSDG 190
Query: 122 KILCEYDYEERQVFANI--------AYN--PSSLAHLRRQVT 153
+ E + + AYN P H+R Q++
Sbjct: 191 SLDGESSNKRPRTTITAKQLETLKSAYNSSPKPARHVREQLS 232
>gi|354498706|ref|XP_003511455.1| PREDICTED: LIM/homeobox protein Lhx2-like [Cricetulus griseus]
Length = 475
Score = 88.6 bits (218), Expect = 8e-16, Method: Composition-based stats.
Identities = 47/106 (44%), Positives = 58/106 (54%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 141 AVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF-SVQRCARCHLGISA 197
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA++ VYHL CF C CN GD F + D+ + C +E
Sbjct: 198 SEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFE 243
>gi|157127146|ref|XP_001661055.1| lim homeobox protein [Aedes aegypti]
gi|108873020|gb|EAT37245.1| AAEL010744-PA [Aedes aegypti]
Length = 459
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 80/162 (49%), Gaps = 20/162 (12%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
D WH CL+C C +L E + + + CK D+ + +GT CAAC IP ++
Sbjct: 80 DRTWHAKCLQCSDCHIQLNE---KCFARNGQLFCKDDFFKRYGTK--CAACDLGIPPTQV 134
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYEERQVFCVGDRFYLCDN 121
V RA++NVYHL+CF C C+ + GD FYL D K++C+ DYE + + YL D
Sbjct: 135 VRRAQDNVYHLQCFMCSMCSRQLNTGDEFYLIEDGKLICKPDYEAAKAKGL----YLSDG 190
Query: 122 KILCEYDYEERQVFANI--------AYN--PSSLAHLRRQVT 153
+ E + + AYN P H+R Q++
Sbjct: 191 SLDGESSNKRPRTTITAKQLETLKSAYNSSPKPARHVREQLS 232
>gi|395506422|ref|XP_003757531.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Sarcophilus
harrisii]
Length = 401
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 62/105 (59%), Gaps = 6/105 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH CLKC C L E + + + + CK D+ + FGT CAAC + IP +
Sbjct: 50 LDRHWHSKCLKCSDCQTPLAE---KCFSRGDGVYCKEDFFKRFGTK--CAACQQGIPPTQ 104
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
+V RA++ VYHL CF+C C + GD FYL D++++C+ DYE
Sbjct: 105 VVRRAQDFVYHLHCFSCVVCKRQLATGDEFYLMEDSRLVCKADYE 149
>gi|344308350|ref|XP_003422840.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Loxodonta africana]
Length = 401
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 61/106 (57%), Gaps = 6/106 (5%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD WH CLKC C L E + + + C+ D+ R FGT CAAC IP
Sbjct: 49 ALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCREDFFRRFGTK--CAACQLGIPPT 103
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
++V RA++ VYHL CFAC C + GD FYL D++++C+ DYE
Sbjct: 104 QVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYE 149
>gi|126302625|ref|XP_001366249.1| PREDICTED: LIM/homeobox protein Lhx3-like isoform 1 [Monodelphis
domestica]
Length = 401
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 62/105 (59%), Gaps = 6/105 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH CLKC C L E + + + + CK D+ + FGT CAAC + IP +
Sbjct: 50 LDRHWHSKCLKCSDCQTPLAE---KCFSRGDGVYCKEDFFKRFGTK--CAACQQGIPPTQ 104
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
+V RA++ VYHL CF+C C + GD FYL D++++C+ DYE
Sbjct: 105 VVRRAQDFVYHLHCFSCVVCKRQLATGDEFYLMEDSRLVCKADYE 149
>gi|344308352|ref|XP_003422841.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Loxodonta africana]
Length = 403
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 61/106 (57%), Gaps = 6/106 (5%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD WH CLKC C L E + + + C+ D+ R FGT CAAC IP
Sbjct: 51 ALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCREDFFRRFGTK--CAACQLGIPPT 105
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
++V RA++ VYHL CFAC C + GD FYL D++++C+ DYE
Sbjct: 106 QVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYE 151
>gi|395506420|ref|XP_003757530.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Sarcophilus
harrisii]
Length = 403
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 80/158 (50%), Gaps = 19/158 (12%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH CLKC C L E + + + + CK D+ + FGT CAAC + IP +
Sbjct: 52 LDRHWHSKCLKCSDCQTPLAE---KCFSRGDGVYCKEDFFKRFGTK--CAACQQGIPPTQ 106
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE---ERQVFCVGDRFY 117
+V RA++ VYHL CF+C C + GD FYL D++++C+ DYE +R+ R
Sbjct: 107 VVRRAQDFVYHLHCFSCVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAESTAKRPR 166
Query: 118 LCDNKILCEYDYEERQVFANIAYN--PSSLAHLRRQVT 153
++ + N AYN P H+R Q++
Sbjct: 167 TT-------ITAKQLETLKN-AYNNSPKPARHVREQLS 196
>gi|328707559|ref|XP_001944557.2| PREDICTED: insulin gene enhancer protein isl-1-like isoform 1
[Acyrthosiphon pisum]
Length = 513
Score = 88.6 bits (218), Expect = 9e-16, Method: Composition-based stats.
Identities = 46/105 (43%), Positives = 58/105 (55%), Gaps = 3/105 (2%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A DL WH CLKC C L E T + + CK DY+RLFGT C C
Sbjct: 118 APDLEWHAACLKCAECHQFLDE-HCTCFVRDGKTYCKLDYVRLFGTK--CDKCNLSFDRT 174
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
E+VMRAK VYH+ECF C C+ + GD F L D+ +LC+ D++
Sbjct: 175 ELVMRAKTKVYHMECFRCNACSRQLIPGDEFALRDDTLLCKQDHD 219
>gi|126302627|ref|XP_001366305.1| PREDICTED: LIM/homeobox protein Lhx3-like isoform 2 [Monodelphis
domestica]
Length = 403
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 80/158 (50%), Gaps = 19/158 (12%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH CLKC C L E + + + + CK D+ + FGT CAAC + IP +
Sbjct: 52 LDRHWHSKCLKCSDCQTPLAE---KCFSRGDGVYCKEDFFKRFGTK--CAACQQGIPPTQ 106
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE---ERQVFCVGDRFY 117
+V RA++ VYHL CF+C C + GD FYL D++++C+ DYE +R+ R
Sbjct: 107 VVRRAQDFVYHLHCFSCVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAESTAKRPR 166
Query: 118 LCDNKILCEYDYEERQVFANIAYN--PSSLAHLRRQVT 153
++ + N AYN P H+R Q++
Sbjct: 167 TT-------ITAKQLETLKN-AYNNSPKPARHVREQLS 196
>gi|148232304|ref|NP_001081623.1| LIM/homeobox protein Lhx3 [Xenopus laevis]
gi|547856|sp|P36200.1|LHX3_XENLA RecName: Full=LIM/homeobox protein Lhx3; Short=LIM homeobox protein
3; AltName: Full=Homeobox protein LIM-3; Short=xLIM-3
gi|407072|emb|CAA80402.1| Xlim-3 [Xenopus laevis]
gi|213623314|gb|AAI69580.1| Xlim-3 protein [Xenopus laevis]
Length = 395
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 62/105 (59%), Gaps = 6/105 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH CLKC C +L E + + + + CK D+ + FGT CAAC + IP +
Sbjct: 44 LDRHWHSKCLKCNDCQIQLAE---KCFSRGDSVYCKDDFFKRFGTK--CAACQQGIPPTQ 98
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
+V RA+ VYHL CFAC C + GD FYL D++++C+ DYE
Sbjct: 99 VVRRAQEFVYHLHCFACIVCKRQLATGDEFYLMEDSRLVCKADYE 143
>gi|18308156|gb|AAL67847.1|AF461699_1 LIM homeobox protein [Gallus gallus]
Length = 214
Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 81/158 (51%), Gaps = 19/158 (12%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH CLKC C +L E + + + + CK D+ + FGT CAAC + IP +
Sbjct: 44 LDRHWHSKCLKCSDCQTQLAE---KCFSRGDGVYCKEDFFKRFGTK--CAACQQGIPPTQ 98
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE---ERQVFCVGDRFY 117
+V RA++ VYHL CFAC C + GD FYL D++++C+ DYE +R+ R
Sbjct: 99 VVRRAQDFVYHLHCFACIVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAESTAKRPR 158
Query: 118 LCDNKILCEYDYEERQVFANIAYN--PSSLAHLRRQVT 153
++ + N AYN P H+R Q++
Sbjct: 159 TT-------ITAKQLETLKN-AYNNSPKPARHVREQLS 188
>gi|390345308|ref|XP_790548.3| PREDICTED: LIM homeobox transcription factor 1-beta-like
[Strongylocentrotus purpuratus]
Length = 387
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 62/103 (60%), Gaps = 5/103 (4%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
+D WHE CL+C C RL + + + + CK DY +LFGT C AC + IP+ E
Sbjct: 49 MDHCWHEQCLQCSVCRIRLSH---SCFARDRKLYCKLDYEKLFGTK--CNACFQSIPSSE 103
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 104
+VMRA +NVYHL CF C C+ + GD F L +N++ C+ DY
Sbjct: 104 LVMRALSNVYHLRCFTCVTCDQQLKKGDEFVLKENRLYCKEDY 146
>gi|335295820|ref|XP_003357609.1| PREDICTED: LIM/homeobox protein Lhx4-like [Sus scrofa]
Length = 390
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 62/105 (59%), Gaps = 6/105 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH CLKC C +L + + +A + CK D+ + FGT C AC + IP +
Sbjct: 46 LDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFKRFGTK--CTACQQGIPPTQ 100
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
+V +A++ VYHL CFAC CN + GD FYL D +++C+ DYE
Sbjct: 101 VVRKAQDFVYHLPCFACIICNRQLATGDEFYLMEDGRLVCKEDYE 145
>gi|395824959|ref|XP_003785717.1| PREDICTED: LIM/homeobox protein Lhx4 [Otolemur garnettii]
Length = 390
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 62/105 (59%), Gaps = 6/105 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH CLKC C +L + + +A + CK D+ + FGT C AC + IP +
Sbjct: 46 LDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFKRFGTK--CTACQQGIPPTQ 100
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
+V +A++ VYHL CFAC CN + GD FYL D +++C+ DYE
Sbjct: 101 VVRKAQDFVYHLHCFACVICNRQLATGDEFYLMEDGRLVCKEDYE 145
>gi|395844276|ref|XP_003794888.1| PREDICTED: LIM/homeobox protein Lhx3 [Otolemur garnettii]
Length = 402
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 78/157 (49%), Gaps = 15/157 (9%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD WH CLKC C L E + + + CK D+ + FGT CAAC IP
Sbjct: 51 ALDRHWHSKCLKCSDCHAPLAE---RCFSRGESVYCKDDFFKRFGTK--CAACQLGIPPT 105
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE---ERQVFCVGDRF 116
++V RA++ VYHL CFAC C + GD FYL D++++C+ DYE +R+ R
Sbjct: 106 QVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKR- 164
Query: 117 YLCDNKILCEYDYEERQVFANIAYNPSSLAHLRRQVT 153
+ E + N + P+ H+R Q++
Sbjct: 165 ---PRTTITAKQLETLKSAYNTSPKPAR--HVREQLS 196
>gi|410979132|ref|XP_003995940.1| PREDICTED: LIM/homeobox protein Lhx2 [Felis catus]
Length = 484
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 47/106 (44%), Positives = 58/106 (54%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 27 AVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF-SVQRCARCHLGISA 83
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA++ VYHL CF C CN GD F + D+ + C +E
Sbjct: 84 SEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFE 129
>gi|426239972|ref|XP_004013890.1| PREDICTED: LIM/homeobox protein Lhx4 [Ovis aries]
Length = 390
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 62/105 (59%), Gaps = 6/105 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH CLKC C +L + + +A + CK D+ + FGT C AC + IP +
Sbjct: 46 LDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFKRFGTK--CTACQQGIPPTQ 100
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
+V +A++ VYHL CFAC CN + GD FYL D +++C+ DYE
Sbjct: 101 VVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYE 145
>gi|170055943|ref|XP_001863808.1| lim homeobox protein [Culex quinquefasciatus]
gi|167875776|gb|EDS39159.1| lim homeobox protein [Culex quinquefasciatus]
Length = 456
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 80/162 (49%), Gaps = 20/162 (12%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
D WH CL+C C +L E + + + CK D+ + +GT CAAC IP ++
Sbjct: 83 DRTWHAKCLQCSECHVQLNE---KCFARNGQLFCKDDFFKRYGTK--CAACDLGIPPTQV 137
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYEERQVFCVGDRFYLCDN 121
V RA++NVYHL+CF C C+ + GD FYL D K++C+ DYE + + YL D
Sbjct: 138 VRRAQDNVYHLQCFMCSMCSRQLNTGDEFYLMEDGKLVCKPDYEAAKAKGL----YLSDG 193
Query: 122 KILCEYDYEERQVFANI--------AYN--PSSLAHLRRQVT 153
+ E + + AYN P H+R Q++
Sbjct: 194 SLDGESSNKRPRTTITAKQLETLKSAYNSSPKPARHVREQLS 235
>gi|119611484|gb|EAW91078.1| LIM homeobox 4 [Homo sapiens]
Length = 390
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 62/105 (59%), Gaps = 6/105 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH CLKC C +L + + +A + CK D+ + FGT C AC + IP +
Sbjct: 46 LDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFKRFGTK--CTACQQGIPPTQ 100
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
+V +A++ VYHL CFAC CN + GD FYL D +++C+ DYE
Sbjct: 101 VVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYE 145
>gi|300795912|ref|NP_001179714.1| LIM/homeobox protein Lhx4 [Bos taurus]
gi|296479119|tpg|DAA21234.1| TPA: LIM homeobox 4 [Bos taurus]
gi|440901216|gb|ELR52198.1| LIM/homeobox protein Lhx4 [Bos grunniens mutus]
Length = 390
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 62/105 (59%), Gaps = 6/105 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH CLKC C +L + + +A + CK D+ + FGT C AC + IP +
Sbjct: 46 LDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFKRFGTK--CTACQQGIPPTQ 100
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
+V +A++ VYHL CFAC CN + GD FYL D +++C+ DYE
Sbjct: 101 VVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYE 145
>gi|403301480|ref|XP_003941417.1| PREDICTED: LIM/homeobox protein Lhx3 [Saimiri boliviensis
boliviensis]
Length = 397
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 78/157 (49%), Gaps = 15/157 (9%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD WH CLKC C L E + + + CK D+ + FGT CAAC IP
Sbjct: 46 ALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCKDDFFKRFGTK--CAACQLGIPPT 100
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE---ERQVFCVGDRF 116
++V RA++ VYHL CFAC C + GD FYL D++++C+ DYE +R+ R
Sbjct: 101 QVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKR- 159
Query: 117 YLCDNKILCEYDYEERQVFANIAYNPSSLAHLRRQVT 153
+ E + N + P+ H+R Q++
Sbjct: 160 ---PRTTITAKQLETLKSAYNTSPKPAR--HVREQLS 191
>gi|194210370|ref|XP_001914860.1| PREDICTED: LIM/homeobox protein Lhx4-like [Equus caballus]
Length = 390
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 62/105 (59%), Gaps = 6/105 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH CLKC C +L + + +A + CK D+ + FGT C AC + IP +
Sbjct: 46 LDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFKRFGTK--CTACQQGIPPTQ 100
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
+V +A++ VYHL CFAC CN + GD FYL D +++C+ DYE
Sbjct: 101 VVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYE 145
>gi|432856246|ref|XP_004068425.1| PREDICTED: LIM/homeobox protein Lhx4-like [Oryzias latipes]
Length = 389
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 62/105 (59%), Gaps = 6/105 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH CLKC C L + + +A + CK D+ + FGT CA+C + IP +
Sbjct: 47 LDRHWHSKCLKCADCQTPLAD---KCFSRAGSVYCKEDFFKRFGTK--CASCQQGIPPTQ 101
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
+V +A++ VYHL CFAC C+ + GD FYL D +++C+ DYE
Sbjct: 102 VVRKAQDFVYHLHCFACIMCSRQLATGDEFYLMEDGRLVCKVDYE 146
>gi|15375314|ref|NP_203129.1| LIM/homeobox protein Lhx4 [Homo sapiens]
gi|209572644|sp|Q969G2.2|LHX4_HUMAN RecName: Full=LIM/homeobox protein Lhx4; Short=LIM homeobox protein
4
gi|14599448|gb|AAK70923.1|AF179849_1 LIM homeobox protein 4 [Homo sapiens]
gi|22094433|gb|AAM91896.1|AF405430_1 LIM homeobox protein 4 [Homo sapiens]
gi|15079940|gb|AAH11759.1| LIM homeobox 4 [Homo sapiens]
gi|123988108|gb|ABM83830.1| LIM homeobox 4 [synthetic construct]
gi|123999145|gb|ABM87154.1| LIM homeobox 4 [synthetic construct]
gi|261861646|dbj|BAI47345.1| LIM homeobox 4 [synthetic construct]
Length = 390
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 62/105 (59%), Gaps = 6/105 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH CLKC C +L + + +A + CK D+ + FGT C AC + IP +
Sbjct: 46 LDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFKRFGTK--CTACQQGIPPTQ 100
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
+V +A++ VYHL CFAC CN + GD FYL D +++C+ DYE
Sbjct: 101 VVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYE 145
>gi|410986072|ref|XP_003999336.1| PREDICTED: LIM/homeobox protein Lhx4 [Felis catus]
Length = 390
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 62/105 (59%), Gaps = 6/105 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH CLKC C +L + + +A + CK D+ + FGT C AC + IP +
Sbjct: 46 LDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFKRFGTK--CTACQQGIPPTQ 100
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
+V +A++ VYHL CFAC CN + GD FYL D +++C+ DYE
Sbjct: 101 VVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYE 145
>gi|426332930|ref|XP_004028045.1| PREDICTED: LIM/homeobox protein Lhx4 [Gorilla gorilla gorilla]
Length = 390
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 62/105 (59%), Gaps = 6/105 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH CLKC C +L + + +A + CK D+ + FGT C AC + IP +
Sbjct: 46 LDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFKRFGTK--CTACQQGIPPTQ 100
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
+V +A++ VYHL CFAC CN + GD FYL D +++C+ DYE
Sbjct: 101 VVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYE 145
>gi|18026224|gb|AAL07260.1| LIM homeodomain protein [Homo sapiens]
Length = 390
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 62/105 (59%), Gaps = 6/105 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH CLKC C +L + + +A + CK D+ + FGT C AC + IP +
Sbjct: 46 LDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFKRFGTK--CTACQQGIPPTQ 100
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
+V +A++ VYHL CFAC CN + GD FYL D +++C+ DYE
Sbjct: 101 VVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYE 145
>gi|431898999|gb|ELK07369.1| LIM/homeobox protein Lhx3 [Pteropus alecto]
Length = 357
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 61/106 (57%), Gaps = 6/106 (5%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD WH CLKC C L E + + + CK D+ + FGT CAAC IP
Sbjct: 49 ALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCKEDFFKRFGTK--CAACQLGIPPT 103
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
++V RA++ VYHL CFAC C + GD FYL D++++C+ DYE
Sbjct: 104 QVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYE 149
>gi|402857943|ref|XP_003893495.1| PREDICTED: LIM/homeobox protein Lhx4 [Papio anubis]
gi|355558975|gb|EHH15755.1| hypothetical protein EGK_01889 [Macaca mulatta]
Length = 390
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 62/105 (59%), Gaps = 6/105 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH CLKC C +L + + +A + CK D+ + FGT C AC + IP +
Sbjct: 46 LDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFKRFGTK--CTACQQGIPPTQ 100
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
+V +A++ VYHL CFAC CN + GD FYL D +++C+ DYE
Sbjct: 101 VVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYE 145
>gi|348504454|ref|XP_003439776.1| PREDICTED: LIM/homeobox protein Lhx4-like [Oreochromis niloticus]
Length = 387
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 62/105 (59%), Gaps = 6/105 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH CLKC C L + + +A + CK D+ + FGT CA+C + IP +
Sbjct: 47 LDRHWHSKCLKCADCQTPLAD---KCFSRAGSVYCKEDFFKRFGTK--CASCQQGIPPTQ 101
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
+V +A++ VYHL CFAC C+ + GD FYL D +++C+ DYE
Sbjct: 102 VVRKAQDFVYHLHCFACIMCSRQLATGDEFYLMEDGRLVCKVDYE 146
>gi|194226030|ref|XP_001918019.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx3 [Equus
caballus]
Length = 401
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 78/157 (49%), Gaps = 15/157 (9%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD WH CLKC C L E + + + CK D+ + FGT CAAC IP
Sbjct: 49 ALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCKDDFFKRFGTK--CAACQLGIPPT 103
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE---ERQVFCVGDRF 116
++V RA++ VYHL CFAC C + GD FYL D++++C+ DYE +R+ R
Sbjct: 104 QVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKR- 162
Query: 117 YLCDNKILCEYDYEERQVFANIAYNPSSLAHLRRQVT 153
+ E + N + P+ H+R Q++
Sbjct: 163 ---PRTTITAKQLETLKSAYNTSPKPAR--HVREQLS 194
>gi|190684642|ref|NP_034842.2| LIM/homeobox protein Lhx4 [Mus musculus]
gi|209572773|sp|P53776.4|LHX4_MOUSE RecName: Full=LIM/homeobox protein Lhx4; Short=LIM homeobox protein
4
gi|148707456|gb|EDL39403.1| LIM homeobox protein 4, isoform CRA_b [Mus musculus]
Length = 390
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 62/105 (59%), Gaps = 6/105 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH CLKC C +L + + +A + CK D+ + FGT C AC + IP +
Sbjct: 46 LDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFKRFGTK--CTACQQGIPPTQ 100
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
+V +A++ VYHL CFAC CN + GD FYL D +++C+ DYE
Sbjct: 101 VVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYE 145
>gi|432115998|gb|ELK37137.1| LIM/homeobox protein Lhx4 [Myotis davidii]
Length = 389
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 62/105 (59%), Gaps = 6/105 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH CLKC C +L + + +A + CK D+ + FGT C AC + IP +
Sbjct: 45 LDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFKRFGTK--CTACQQGIPPTQ 99
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
+V +A++ VYHL CFAC CN + GD FYL D +++C+ DYE
Sbjct: 100 VVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYE 144
>gi|73960401|ref|XP_547420.2| PREDICTED: LIM/homeobox protein Lhx4 isoform 1 [Canis lupus
familiaris]
Length = 390
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 62/105 (59%), Gaps = 6/105 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH CLKC C +L + + +A + CK D+ + FGT C AC + IP +
Sbjct: 46 LDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFKRFGTK--CTACQQGIPPTQ 100
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
+V +A++ VYHL CFAC CN + GD FYL D +++C+ DYE
Sbjct: 101 VVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYE 145
>gi|84490413|ref|NP_001033709.1| LIM/homeobox protein Lhx3 [Bos taurus]
gi|62952823|gb|AAY23167.1| LIM homeodomain 3 protein b isoform [Bos taurus]
gi|62952825|gb|AAY23168.1| LIM homeodomain 3 protein b isoform [Bos taurus]
gi|296482071|tpg|DAA24186.1| TPA: LIM homeobox protein 3 [Bos taurus]
Length = 403
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 79/159 (49%), Gaps = 15/159 (9%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD WH CLKC C L E + + + CK D+ + FGT CAAC IP
Sbjct: 51 ALDRHWHSKCLKCSDCHAPLAE---RCFSRGESVYCKDDFFKRFGTK--CAACQLGIPPT 105
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE---ERQVFCVGDRF 116
++V RA++ VYHL CFAC C + GD FYL D++++C+ DYE +R+ R
Sbjct: 106 QVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKR- 164
Query: 117 YLCDNKILCEYDYEERQVFANIAYNPSSLAHLRRQVTLQ 155
+ E + N + P+ H+R Q++ +
Sbjct: 165 ---PRTTITAKQLETLKSAYNTSPKPAR--HVREQLSSE 198
>gi|344278250|ref|XP_003410909.1| PREDICTED: LIM/homeobox protein Lhx4-like [Loxodonta africana]
Length = 390
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 62/105 (59%), Gaps = 6/105 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH CLKC C +L + + +A + CK D+ + FGT C AC + IP +
Sbjct: 46 LDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFKRFGTK--CTACQQGIPPTQ 100
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
+V +A++ VYHL CFAC CN + GD FYL D +++C+ DYE
Sbjct: 101 VVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYE 145
>gi|296191167|ref|XP_002743507.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Callithrix jacchus]
Length = 402
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 78/157 (49%), Gaps = 15/157 (9%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD WH CLKC C L E + + + CK D+ + FGT CAAC IP
Sbjct: 51 ALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCKDDFFKRFGTK--CAACQLGIPPT 105
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE---ERQVFCVGDRF 116
++V RA++ VYHL CFAC C + GD FYL D++++C+ DYE +R+ R
Sbjct: 106 QVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKR- 164
Query: 117 YLCDNKILCEYDYEERQVFANIAYNPSSLAHLRRQVT 153
+ E + N + P+ H+R Q++
Sbjct: 165 ---PRTTITAKQLETLKSAYNTSPKPAR--HVREQLS 196
>gi|109109777|ref|XP_001096075.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Macaca mulatta]
Length = 397
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 78/157 (49%), Gaps = 15/157 (9%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD WH CLKC C L E + + + CK D+ + FGT CAAC IP
Sbjct: 46 ALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCKDDFFKRFGTK--CAACQLGIPPT 100
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE---ERQVFCVGDRF 116
++V RA++ VYHL CFAC C + GD FYL D++++C+ DYE +R+ R
Sbjct: 101 QVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKR- 159
Query: 117 YLCDNKILCEYDYEERQVFANIAYNPSSLAHLRRQVT 153
+ E + N + P+ H+R Q++
Sbjct: 160 ---PRTTITAKQLETLKSAYNTSPKPAR--HVREQLS 191
>gi|296191171|ref|XP_002743509.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 3 [Callithrix jacchus]
Length = 373
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 78/157 (49%), Gaps = 15/157 (9%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD WH CLKC C L E + + + CK D+ + FGT CAAC IP
Sbjct: 22 ALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCKDDFFKRFGTK--CAACQLGIPPT 76
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE---ERQVFCVGDRF 116
++V RA++ VYHL CFAC C + GD FYL D++++C+ DYE +R+ R
Sbjct: 77 QVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKR- 135
Query: 117 YLCDNKILCEYDYEERQVFANIAYNPSSLAHLRRQVT 153
+ E + N + P+ H+R Q++
Sbjct: 136 ---PRTTITAKQLETLKSAYNTSPKPAR--HVREQLS 167
>gi|29437129|gb|AAH49834.1| Lhx4 protein [Mus musculus]
Length = 390
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 62/105 (59%), Gaps = 6/105 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH CLKC C +L + + +A + CK D+ + FGT C AC + IP +
Sbjct: 46 LDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFKRFGTK--CTACQQGIPPTQ 100
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
+V +A++ VYHL CFAC CN + GD FYL D +++C+ DYE
Sbjct: 101 VVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYE 145
>gi|351699208|gb|EHB02127.1| LIM/homeobox protein Lhx4 [Heterocephalus glaber]
Length = 390
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 62/105 (59%), Gaps = 6/105 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH CLKC C +L + + +A + CK D+ + FGT C AC + IP +
Sbjct: 46 LDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFKRFGTK--CTACQQGIPPTQ 100
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
+V +A++ VYHL CFAC CN + GD FYL D +++C+ DYE
Sbjct: 101 VVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYE 145
>gi|297685716|ref|XP_002820429.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Pongo abelii]
Length = 402
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 61/106 (57%), Gaps = 6/106 (5%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD WH CLKC C L E + + + CK D+ + FGT CAAC IP
Sbjct: 51 ALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCKDDFFKRFGTK--CAACQLGIPPT 105
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
++V RA++ VYHL CFAC C + GD FYL D++++C+ DYE
Sbjct: 106 QVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYE 151
>gi|297662584|ref|XP_002809779.1| PREDICTED: LIM/homeobox protein Lhx4 [Pongo abelii]
Length = 390
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 62/105 (59%), Gaps = 6/105 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH CLKC C +L + + +A + CK D+ + FGT C AC + IP +
Sbjct: 46 LDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFKRFGTK--CTACQQGIPPTQ 100
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
+V +A++ VYHL CFAC CN + GD FYL D +++C+ DYE
Sbjct: 101 VVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYE 145
>gi|402896087|ref|XP_003911139.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Papio anubis]
Length = 402
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 78/157 (49%), Gaps = 15/157 (9%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD WH CLKC C L E + + + CK D+ + FGT CAAC IP
Sbjct: 51 ALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCKDDFFKRFGTK--CAACQLGIPPT 105
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE---ERQVFCVGDRF 116
++V RA++ VYHL CFAC C + GD FYL D++++C+ DYE +R+ R
Sbjct: 106 QVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKR- 164
Query: 117 YLCDNKILCEYDYEERQVFANIAYNPSSLAHLRRQVT 153
+ E + N + P+ H+R Q++
Sbjct: 165 ---PRTTITAKQLETLKSAYNTSPKPAR--HVREQLS 196
>gi|157412000|gb|ABV54626.1| Lim homeobox protein 3 splice variant [Salmo salar]
Length = 379
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 63/105 (60%), Gaps = 6/105 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH CLKC C +L + + + + + CK D+ + FGT CAAC + IP +
Sbjct: 28 LDRHWHSKCLKCSDCQSQLAD---KCFSRGDSVYCKEDFFKRFGTK--CAACQQGIPPTQ 82
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
+V RA++ VYHL CFAC C + GD +YL D++++C+ DYE
Sbjct: 83 VVRRAQDFVYHLHCFACIVCKRQLATGDEYYLMEDSRLVCKADYE 127
>gi|7657303|ref|NP_055379.1| LIM/homeobox protein Lhx3 isoform b [Homo sapiens]
gi|7110145|gb|AAF36809.1|AF156889_1 LIM homeobox protein 3 isoform b [Homo sapiens]
gi|119608611|gb|EAW88205.1| LIM homeobox 3, isoform CRA_a [Homo sapiens]
gi|157169604|gb|AAI52819.1| LIM homeobox 3 [synthetic construct]
gi|162318656|gb|AAI56736.1| LIM homeobox 3 [synthetic construct]
gi|307685965|dbj|BAJ20913.1| LIM homeobox 3 [synthetic construct]
gi|326205262|dbj|BAJ84013.1| LIM/homeobox protein Lhx3 [Homo sapiens]
Length = 402
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 61/106 (57%), Gaps = 6/106 (5%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD WH CLKC C L E + + + CK D+ + FGT CAAC IP
Sbjct: 51 ALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCKDDFFKRFGTK--CAACQLGIPPT 105
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
++V RA++ VYHL CFAC C + GD FYL D++++C+ DYE
Sbjct: 106 QVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYE 151
>gi|293345789|ref|XP_002726117.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Rattus norvegicus]
gi|293357702|ref|XP_002729190.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Rattus norvegicus]
gi|149039301|gb|EDL93521.1| rCG45383, isoform CRA_a [Rattus norvegicus]
Length = 400
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 78/157 (49%), Gaps = 15/157 (9%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD WH CLKC C L E + + + CK D+ + FGT CAAC IP
Sbjct: 49 ALDRHWHSKCLKCSDCHVPLAE---RCFSRGESVYCKDDFFKRFGTK--CAACQLGIPPT 103
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE---ERQVFCVGDRF 116
++V RA++ VYHL CFAC C + GD FYL D++++C+ DYE +R+ R
Sbjct: 104 QVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKR- 162
Query: 117 YLCDNKILCEYDYEERQVFANIAYNPSSLAHLRRQVT 153
+ E + N + P+ H+R Q++
Sbjct: 163 ---PRTTITAKQLETLKSAYNTSPKPAR--HVREQLS 194
>gi|109109779|ref|XP_001096188.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Macaca mulatta]
Length = 402
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 79/159 (49%), Gaps = 15/159 (9%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD WH CLKC C L E + + + CK D+ + FGT CAAC IP
Sbjct: 51 ALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCKDDFFKRFGTK--CAACQLGIPPT 105
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE---ERQVFCVGDRF 116
++V RA++ VYHL CFAC C + GD FYL D++++C+ DYE +R+ R
Sbjct: 106 QVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKR- 164
Query: 117 YLCDNKILCEYDYEERQVFANIAYNPSSLAHLRRQVTLQ 155
+ E + N + P+ H+R Q++ +
Sbjct: 165 ---PRTTITAKQLETLKSAYNTSPKPAR--HVREQLSSE 198
>gi|6572499|gb|AAF17291.1| LHX3 protein [Homo sapiens]
gi|6572501|gb|AAF17292.1| LHX3 protein [Homo sapiens]
Length = 370
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 78/157 (49%), Gaps = 15/157 (9%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD WH CLKC C L E + + + CK D+ + FGT CAAC IP
Sbjct: 19 ALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCKDDFFKRFGTK--CAACQLGIPPT 73
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE---ERQVFCVGDRF 116
++V RA++ VYHL CFAC C + GD FYL D++++C+ DYE +R+ R
Sbjct: 74 QVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKR- 132
Query: 117 YLCDNKILCEYDYEERQVFANIAYNPSSLAHLRRQVT 153
+ E + N + P+ H+R Q++
Sbjct: 133 ---PRTTITAKQLETLKSAYNTSPKPAR--HVREQLS 164
>gi|326205258|dbj|BAJ84011.1| LIM/homeobox protein Lhx3 [Homo sapiens]
Length = 386
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 78/157 (49%), Gaps = 15/157 (9%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD WH CLKC C L E + + + CK D+ + FGT CAAC IP
Sbjct: 35 ALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCKDDFFKRFGTK--CAACQLGIPPT 89
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE---ERQVFCVGDRF 116
++V RA++ VYHL CFAC C + GD FYL D++++C+ DYE +R+ R
Sbjct: 90 QVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKR- 148
Query: 117 YLCDNKILCEYDYEERQVFANIAYNPSSLAHLRRQVT 153
+ E + N + P+ H+R Q++
Sbjct: 149 ---PRTTITAKQLETLKSAYNTSPKPAR--HVREQLS 180
>gi|296191169|ref|XP_002743508.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Callithrix jacchus]
Length = 397
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 78/157 (49%), Gaps = 15/157 (9%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD WH CLKC C L E + + + CK D+ + FGT CAAC IP
Sbjct: 46 ALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCKDDFFKRFGTK--CAACQLGIPPT 100
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE---ERQVFCVGDRF 116
++V RA++ VYHL CFAC C + GD FYL D++++C+ DYE +R+ R
Sbjct: 101 QVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKR- 159
Query: 117 YLCDNKILCEYDYEERQVFANIAYNPSSLAHLRRQVT 153
+ E + N + P+ H+R Q++
Sbjct: 160 ---PRTTITAKQLETLKSAYNTSPKPAR--HVREQLS 191
>gi|4809173|gb|AAD30125.1|AF135415_1 LIM-homeobox protein [Mus musculus]
Length = 367
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 62/105 (59%), Gaps = 6/105 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH CLKC C +L + + +A + CK D+ + FGT C AC + IP +
Sbjct: 23 LDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFKRFGTK--CTACQQGIPPTQ 77
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
+V +A++ VYHL CFAC CN + GD FYL D +++C+ DYE
Sbjct: 78 VVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYE 122
>gi|14579221|gb|AAK69169.1|AF282899_1 LIM homeobox protein [Homo sapiens]
gi|15146348|dbj|BAB62817.1| LIM homeobox 4 [Homo sapiens]
Length = 367
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 62/105 (59%), Gaps = 6/105 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH CLKC C +L + + +A + CK D+ + FGT C AC + IP +
Sbjct: 23 LDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFKRFGTK--CTACQQGIPPTQ 77
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
+V +A++ VYHL CFAC CN + GD FYL D +++C+ DYE
Sbjct: 78 VVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYE 122
>gi|30023847|ref|NP_835258.1| LIM/homeobox protein Lhx3 isoform a [Homo sapiens]
gi|12643415|sp|Q9UBR4.2|LHX3_HUMAN RecName: Full=LIM/homeobox protein Lhx3; Short=LIM homeobox protein
3
gi|7110143|gb|AAF36808.1|AF156888_1 LIM homeobox protein 3 isoform a [Homo sapiens]
gi|16565927|gb|AAL26314.1| LIM homeobox protein 3 [Homo sapiens]
gi|119608612|gb|EAW88206.1| LIM homeobox 3, isoform CRA_b [Homo sapiens]
gi|326205254|dbj|BAJ84009.1| LIM/homeobox protein Lhx3 [Homo sapiens]
gi|326205256|dbj|BAJ84010.1| LIM/homeobox protein Lhx3 [Homo sapiens]
gi|326205264|dbj|BAJ84014.1| LIM/homeobox protein Lhx3 [Homo sapiens]
Length = 397
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 78/157 (49%), Gaps = 15/157 (9%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD WH CLKC C L E + + + CK D+ + FGT CAAC IP
Sbjct: 46 ALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCKDDFFKRFGTK--CAACQLGIPPT 100
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE---ERQVFCVGDRF 116
++V RA++ VYHL CFAC C + GD FYL D++++C+ DYE +R+ R
Sbjct: 101 QVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKR- 159
Query: 117 YLCDNKILCEYDYEERQVFANIAYNPSSLAHLRRQVT 153
+ E + N + P+ H+R Q++
Sbjct: 160 ---PRTTITAKQLETLKSAYNTSPKPAR--HVREQLS 191
>gi|355746127|gb|EHH50752.1| hypothetical protein EGM_01626, partial [Macaca fascicularis]
Length = 364
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 62/105 (59%), Gaps = 6/105 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH CLKC C +L + + +A + CK D+ + FGT C AC + IP +
Sbjct: 20 LDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFKRFGTK--CTACQQGIPPTQ 74
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
+V +A++ VYHL CFAC CN + GD FYL D +++C+ DYE
Sbjct: 75 VVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYE 119
>gi|348578364|ref|XP_003474953.1| PREDICTED: LIM/homeobox protein Lhx4 [Cavia porcellus]
Length = 390
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 62/105 (59%), Gaps = 6/105 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH CLKC C +L + + +A + CK D+ + FGT C AC + IP +
Sbjct: 46 LDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFKRFGTK--CTACQQGIPPTQ 100
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
+V +A++ VYHL CFAC CN + GD FYL D +++C+ DYE
Sbjct: 101 VVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYE 145
>gi|402896089|ref|XP_003911140.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 3 [Papio anubis]
Length = 373
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 78/157 (49%), Gaps = 15/157 (9%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD WH CLKC C L E + + + CK D+ + FGT CAAC IP
Sbjct: 22 ALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCKDDFFKRFGTK--CAACQLGIPPT 76
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE---ERQVFCVGDRF 116
++V RA++ VYHL CFAC C + GD FYL D++++C+ DYE +R+ R
Sbjct: 77 QVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKR- 135
Query: 117 YLCDNKILCEYDYEERQVFANIAYNPSSLAHLRRQVT 153
+ E + N + P+ H+R Q++
Sbjct: 136 ---PRTTITAKQLETLKSAYNTSPKPAR--HVREQLS 167
>gi|344254045|gb|EGW10149.1| LIM/homeobox protein Lhx4 [Cricetulus griseus]
Length = 397
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 67/114 (58%), Gaps = 7/114 (6%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH CLKC C +L + + +A + CK D+ + FGT C AC + IP +
Sbjct: 26 LDRHWHSSCLKCADCQMQLVD---RCFSRAGSVYCKEDFFKRFGTK--CTACQQGIPPTQ 80
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYEE-RQVFCVG 113
+V +A++ VYHL CFAC CN + GD FYL D +++C+ DYE +Q C+G
Sbjct: 81 VVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYETAKQNGCLG 134
>gi|293345787|ref|XP_001078243.2| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Rattus norvegicus]
gi|293357700|ref|XP_001059910.2| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Rattus norvegicus]
gi|149039302|gb|EDL93522.1| rCG45383, isoform CRA_b [Rattus norvegicus]
Length = 402
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 61/106 (57%), Gaps = 6/106 (5%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD WH CLKC C L E + + + CK D+ + FGT CAAC IP
Sbjct: 51 ALDRHWHSKCLKCSDCHVPLAE---RCFSRGESVYCKDDFFKRFGTK--CAACQLGIPPT 105
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
++V RA++ VYHL CFAC C + GD FYL D++++C+ DYE
Sbjct: 106 QVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYE 151
>gi|351701911|gb|EHB04830.1| LIM/homeobox protein Lhx3 [Heterocephalus glaber]
Length = 448
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 61/106 (57%), Gaps = 6/106 (5%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD WH CLKC C L E + + + CK D+ + FGT CAAC IP
Sbjct: 97 ALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCKDDFFKRFGTK--CAACQLGIPPT 151
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
++V RA++ VYHL CFAC C + GD FYL D++++C+ DYE
Sbjct: 152 QVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYE 197
>gi|211971017|ref|NP_001130018.1| LIM/homeobox protein Lhx3 [Salmo salar]
gi|157412002|gb|ABV54627.1| Lim homeobox protein 3 [Salmo salar]
Length = 395
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 63/105 (60%), Gaps = 6/105 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH CLKC C +L + + + + + CK D+ + FGT CAAC + IP +
Sbjct: 44 LDRHWHSKCLKCSDCQSQLAD---KCFSRGDSVYCKEDFFKRFGTK--CAACQQGIPPTQ 98
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
+V RA++ VYHL CFAC C + GD +YL D++++C+ DYE
Sbjct: 99 VVRRAQDFVYHLHCFACIVCKRQLATGDEYYLMEDSRLVCKADYE 143
>gi|402896085|ref|XP_003911138.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Papio anubis]
Length = 397
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 78/157 (49%), Gaps = 15/157 (9%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD WH CLKC C L E + + + CK D+ + FGT CAAC IP
Sbjct: 46 ALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCKDDFFKRFGTK--CAACQLGIPPT 100
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE---ERQVFCVGDRF 116
++V RA++ VYHL CFAC C + GD FYL D++++C+ DYE +R+ R
Sbjct: 101 QVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKR- 159
Query: 117 YLCDNKILCEYDYEERQVFANIAYNPSSLAHLRRQVT 153
+ E + N + P+ H+R Q++
Sbjct: 160 ---PRTTITAKQLETLKSAYNTSPKPAR--HVREQLS 191
>gi|149058349|gb|EDM09506.1| LIM homeobox protein 4 (predicted), isoform CRA_a [Rattus
norvegicus]
Length = 376
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 62/105 (59%), Gaps = 6/105 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH CLKC C +L + + +A + CK D+ + FGT C AC + IP +
Sbjct: 32 LDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFKRFGTK--CTACQQGIPPTQ 86
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
+V +A++ VYHL CFAC CN + GD FYL D +++C+ DYE
Sbjct: 87 VVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYE 131
>gi|190336903|gb|AAI62627.1| LIM homeobox 3 [Danio rerio]
Length = 398
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 82/160 (51%), Gaps = 19/160 (11%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH CLKC C +L + + + + + CK D+ + FGT CAAC + IP +
Sbjct: 44 LDRHWHSKCLKCSDCQSQLAD---KCFSRGDSVYCKDDFFKRFGTK--CAACQQGIPPTQ 98
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE---ERQVFCVGDRFY 117
+V RA++ VYHL CFAC C + GD +YL D++++C+ DYE +R+ R
Sbjct: 99 VVRRAQDFVYHLHCFACIVCKRQLATGDEYYLMEDSRLVCKADYETAKQREADSTAKR-- 156
Query: 118 LCDNKILCEYDYEERQVFANIAYN--PSSLAHLRRQVTLQ 155
++ + N AYN P H+R Q++ +
Sbjct: 157 -----PRTTITAKQLETLKN-AYNNSPKPARHVREQLSTE 190
>gi|148676344|gb|EDL08291.1| mCG18748, isoform CRA_a [Mus musculus]
Length = 400
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 78/157 (49%), Gaps = 15/157 (9%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD WH CLKC C L E + + + CK D+ + FGT CAAC IP
Sbjct: 49 ALDRHWHSKCLKCSDCHVPLAE---RCFSRGESVYCKDDFFKRFGTK--CAACQLGIPPT 103
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE---ERQVFCVGDRF 116
++V RA++ VYHL CFAC C + GD FYL D++++C+ DYE +R+ R
Sbjct: 104 QVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKR- 162
Query: 117 YLCDNKILCEYDYEERQVFANIAYNPSSLAHLRRQVT 153
+ E + N + P+ H+R Q++
Sbjct: 163 ---PRTTITAKQLETLKSAYNTSPKPAR--HVREQLS 194
>gi|260793678|ref|XP_002591838.1| LIM class homeodomain transcription factor, Lhx3 subclass
[Branchiostoma floridae]
gi|229277049|gb|EEN47849.1| LIM class homeodomain transcription factor, Lhx3 subclass
[Branchiostoma floridae]
Length = 402
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 81/156 (51%), Gaps = 13/156 (8%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH CL+C C +L + + + + CK D+ R FGT CA C + IP +
Sbjct: 57 LDRSWHAKCLQCSDCQAQLTD---KCFSRDGHVYCKDDFFRRFGTK--CAGCGQGIPPTQ 111
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE---ERQVFCVGDRFY 117
+V RA++ +YHL+CFAC C + GD FYL D K++C+ DYE +R++ G +
Sbjct: 112 VVRRAQDKIYHLQCFACIMCKRQLATGDEFYLMEDAKLVCKSDYEAAKQREMELEGTQ-K 170
Query: 118 LCDNKILCEYDYEERQVFANIAYNPSSLAHLRRQVT 153
I + +Q + N +P H+R Q++
Sbjct: 171 RPRTTITAKQLETLKQAYQN---SPKPARHVREQLS 203
>gi|47218680|emb|CAG12404.1| unnamed protein product [Tetraodon nigroviridis]
Length = 444
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 63/105 (60%), Gaps = 6/105 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
L+ WH CLKC C +L E + + + + CK D+ + FGT CAAC + IP +
Sbjct: 21 LERHWHSKCLKCSDCQAQLAE---KCFSRGDSVYCKEDFFKRFGTK--CAACQQGIPPTQ 75
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
+V RA++ VYHL CFAC C + GD +YL D++++C+ DYE
Sbjct: 76 VVRRAQDFVYHLHCFACIVCKRQLATGDEYYLMEDSRLVCKTDYE 120
>gi|89001116|ref|NP_001034742.1| LIM/homeobox protein Lhx3 [Mus musculus]
gi|598327|gb|AAB64178.1| homeodomain protein [Mus musculus]
gi|124375774|gb|AAI32557.1| LIM homeobox protein 3 [Mus musculus]
gi|124376794|gb|AAI32555.1| LIM homeobox protein 3 [Mus musculus]
Length = 402
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 61/106 (57%), Gaps = 6/106 (5%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD WH CLKC C L E + + + CK D+ + FGT CAAC IP
Sbjct: 51 ALDRHWHSKCLKCSDCHVPLAE---RCFSRGESVYCKDDFFKRFGTK--CAACQLGIPPT 105
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
++V RA++ VYHL CFAC C + GD FYL D++++C+ DYE
Sbjct: 106 QVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYE 151
>gi|1708829|sp|P50481.1|LHX3_MOUSE RecName: Full=LIM/homeobox protein Lhx3; Short=LIM homeobox protein
3; AltName: Full=Homeobox protein LIM-3; AltName:
Full=Homeobox protein P-LIM
gi|575517|gb|AAA62369.1| LIM-homeoprotein [Mus musculus]
gi|187956241|gb|AAI50690.1| Lhx3 protein [Mus musculus]
Length = 400
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 78/157 (49%), Gaps = 15/157 (9%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD WH CLKC C L E + + + CK D+ + FGT CAAC IP
Sbjct: 49 ALDRHWHSKCLKCSDCHVPLAE---RCFSRGESVYCKDDFFKRFGTK--CAACQLGIPPT 103
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE---ERQVFCVGDRF 116
++V RA++ VYHL CFAC C + GD FYL D++++C+ DYE +R+ R
Sbjct: 104 QVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKR- 162
Query: 117 YLCDNKILCEYDYEERQVFANIAYNPSSLAHLRRQVT 153
+ E + N + P+ H+R Q++
Sbjct: 163 ---PRTTITAKQLETLKSAYNTSPKPAR--HVREQLS 194
>gi|148676345|gb|EDL08292.1| mCG18748, isoform CRA_b [Mus musculus]
Length = 402
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 61/106 (57%), Gaps = 6/106 (5%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD WH CLKC C L E + + + CK D+ + FGT CAAC IP
Sbjct: 51 ALDRHWHSKCLKCSDCHVPLAE---RCFSRGESVYCKDDFFKRFGTK--CAACQLGIPPT 105
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
++V RA++ VYHL CFAC C + GD FYL D++++C+ DYE
Sbjct: 106 QVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYE 151
>gi|354497584|ref|XP_003510899.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 2 [Cricetulus griseus]
Length = 401
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 78/157 (49%), Gaps = 15/157 (9%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD WH CLKC C L E + + + CK D+ + FGT CAAC IP
Sbjct: 49 ALDRHWHSKCLKCSDCHIPLAE---RCFSRGESVYCKDDFFKRFGTK--CAACQLGIPPT 103
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE---ERQVFCVGDRF 116
++V RA++ VYHL CFAC C + GD FYL D++++C+ DYE +R+ R
Sbjct: 104 QVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKR- 162
Query: 117 YLCDNKILCEYDYEERQVFANIAYNPSSLAHLRRQVT 153
+ E + N + P+ H+R Q++
Sbjct: 163 ---PRTTITAKQLETLKSAYNTSPKPAR--HVREQLS 194
>gi|354497582|ref|XP_003510898.1| PREDICTED: LIM/homeobox protein Lhx3 isoform 1 [Cricetulus griseus]
gi|344256661|gb|EGW12765.1| LIM/homeobox protein Lhx3 [Cricetulus griseus]
Length = 403
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 61/106 (57%), Gaps = 6/106 (5%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD WH CLKC C L E + + + CK D+ + FGT CAAC IP
Sbjct: 51 ALDRHWHSKCLKCSDCHIPLAE---RCFSRGESVYCKDDFFKRFGTK--CAACQLGIPPT 105
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
++V RA++ VYHL CFAC C + GD FYL D++++C+ DYE
Sbjct: 106 QVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYE 151
>gi|28316900|gb|AAO39472.1| RE70568p [Drosophila melanogaster]
Length = 523
Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 43/109 (39%), Positives = 62/109 (56%), Gaps = 9/109 (8%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYL---RLFGTTGYCAACTKVIP 58
L+ WH CL+C C G++ + + + CK D+ R +GT C+AC IP
Sbjct: 138 LERTWHAKCLQCSECH---GQLNDKCFARNGQLFCKEDFFKSNRRYGTK--CSACDMGIP 192
Query: 59 AFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYEE 106
++V RA++NVYHL+CF C C+ GD FYL D K++C+ DYEE
Sbjct: 193 PTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICKRDYEE 241
>gi|18858975|ref|NP_571283.1| LIM/homeobox protein Lhx3 [Danio rerio]
gi|2497671|sp|Q90421.1|LHX3_DANRE RecName: Full=LIM/homeobox protein Lhx3; Short=LIM homeobox protein
3; AltName: Full=Homeobox protein LIM-3
gi|1000342|gb|AAA76714.1| LIM homeobox protein [Danio rerio]
Length = 398
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 82/160 (51%), Gaps = 19/160 (11%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH CLKC C +L + + + + + CK D+ + FGT CAAC + IP +
Sbjct: 44 LDRHWHSKCLKCSDCQSQLAD---KCFSRGDSVYCKDDFFKRFGTK--CAACQQGIPPTQ 98
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE---ERQVFCVGDRFY 117
+V RA++ VYHL CFAC C + GD +YL D++++C+ DYE +R+ R
Sbjct: 99 VVRRAQDFVYHLHCFACIVCKRQLATGDEYYLMEDSRLVCKADYETAKQREADSTAKR-- 156
Query: 118 LCDNKILCEYDYEERQVFANIAYN--PSSLAHLRRQVTLQ 155
++ + N AYN P H+R Q++ +
Sbjct: 157 -----PRTTITAKQLETLKN-AYNNSPKPARHVREQLSTE 190
>gi|327270281|ref|XP_003219918.1| PREDICTED: LIM/homeobox protein Lhx4-like [Anolis carolinensis]
Length = 449
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 62/105 (59%), Gaps = 6/105 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH CLKC C +L + + +A + CK D+ + FGT C AC + IP +
Sbjct: 105 LDRHWHGSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFKRFGTK--CTACQQGIPPTQ 159
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
+V +A++ VYHL CFAC CN + GD FYL D +++C+ DYE
Sbjct: 160 VVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYE 204
>gi|301763072|ref|XP_002916962.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx8-like
[Ailuropoda melanoleuca]
Length = 574
Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 44/103 (42%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
DL WH CL C C LG ++ Y K I CK DY R +GT C+ C + I + +
Sbjct: 320 DLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYGTR--CSRCGRHIHSTDW 376
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RAK NVYHL CFAC C + G+ F L + K+LC Y+
Sbjct: 377 VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYD 419
>gi|426363578|ref|XP_004048915.1| PREDICTED: LIM/homeobox protein Lhx3 [Gorilla gorilla gorilla]
Length = 304
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 61/106 (57%), Gaps = 6/106 (5%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD WH CLKC C L E + + + CK D+ + FGT CAAC IP
Sbjct: 51 ALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCKDDFFKRFGTK--CAACQLGIPPT 105
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
++V RA++ VYHL CFAC C + GD FYL D++++C+ DYE
Sbjct: 106 QVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYE 151
>gi|25453086|sp|O97581.1|LHX3_PIG RecName: Full=LIM/homeobox protein Lhx3; Short=LIM homeobox protein
3; AltName: Full=Homeobox protein LIM-3; AltName:
Full=Homeobox protein P-LIM
gi|4091889|gb|AAC99331.1| LIM homeodomain transcription factor [Sus scrofa]
Length = 383
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 78/157 (49%), Gaps = 15/157 (9%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD WH CLKC C L E + + + CK D+ + FGT CAAC IP
Sbjct: 31 ALDRHWHSKCLKCSDCHTPLAE---RCFSRGESLYCKDDFFKRFGTK--CAACQLGIPPT 85
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE---ERQVFCVGDRF 116
++V RA++ VYHL CFAC C + GD FYL D++++C+ DYE +R+ R
Sbjct: 86 QVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKR- 144
Query: 117 YLCDNKILCEYDYEERQVFANIAYNPSSLAHLRRQVT 153
+ E + N + P+ H+R Q++
Sbjct: 145 ---PRTTITAKQLETLKSAYNTSPKPAR--HVREQLS 176
>gi|281347117|gb|EFB22701.1| hypothetical protein PANDA_014076 [Ailuropoda melanoleuca]
Length = 369
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 61/106 (57%), Gaps = 6/106 (5%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD WH CLKC C L E + + + CK D+ + FGT CAAC IP
Sbjct: 49 ALDRHWHSKCLKCTDCHAPLAE---RCFSRGESVYCKDDFFKRFGTK--CAACQLGIPPT 103
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
++V RA++ VYHL CFAC C + GD FYL D++++C+ DYE
Sbjct: 104 QVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYE 149
>gi|20502369|dbj|BAB91364.1| LIM homeodomain protein [Branchiostoma belcheri]
Length = 402
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 81/156 (51%), Gaps = 13/156 (8%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH CL+C C +L + + + + CK D+ R FGT CA C + IP +
Sbjct: 57 LDRSWHAKCLQCSDCQAQLTD---KCFSRDGHVYCKDDFFRRFGTK--CAGCGQGIPPTQ 111
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE---ERQVFCVGDRFY 117
+V RA++ +YHL+CFAC C + GD FYL D K++C+ DYE +R++ G +
Sbjct: 112 VVRRAQDKIYHLQCFACIMCKRQLATGDEFYLMEDAKLVCKSDYEAAKQREMELEGTQ-K 170
Query: 118 LCDNKILCEYDYEERQVFANIAYNPSSLAHLRRQVT 153
I + +Q + N +P H+R Q++
Sbjct: 171 RPRTTITAKQLETLKQAYQN---SPKPARHVREQLS 203
>gi|358333778|dbj|GAA52242.1| LIM homeobox protein 3/4, partial [Clonorchis sinensis]
Length = 405
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 63/105 (60%), Gaps = 6/105 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
L+ WH +CLKC C L + + + + + CK D+ R FGT CA C + IP E
Sbjct: 4 LNQHWHSNCLKCMDCGASLSD---KCFMRMDEVYCKNDFFRRFGTK--CAGCERGIPPTE 58
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
+V A++NVYH++CFAC C+ GD FYL D K++C+YD+E
Sbjct: 59 VVRTAQDNVYHMDCFACVICDRLLNTGDEFYLLRDRKLMCKYDFE 103
>gi|301770851|ref|XP_002920842.1| PREDICTED: LIM/homeobox protein Lhx4-like [Ailuropoda melanoleuca]
Length = 390
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 62/105 (59%), Gaps = 6/105 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH CLKC C +L + + +A + CK D+ + FGT C AC + IP +
Sbjct: 46 LDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFKRFGTK--CTACQQGIPPTQ 100
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
+V +A++ VYHL CF+C CN + GD FYL D +++C+ DYE
Sbjct: 101 VVRKAQDFVYHLHCFSCVICNRQLATGDEFYLMEDGRLVCKEDYE 145
>gi|301778549|ref|XP_002924694.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx3-like
[Ailuropoda melanoleuca]
Length = 365
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 61/106 (57%), Gaps = 6/106 (5%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD WH CLKC C L E + + + CK D+ + FGT CAAC IP
Sbjct: 49 ALDRHWHSKCLKCTDCHAPLAE---RCFSRGESVYCKDDFFKRFGTK--CAACQLGIPPT 103
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
++V RA++ VYHL CFAC C + GD FYL D++++C+ DYE
Sbjct: 104 QVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYE 149
>gi|308235933|ref|NP_001184116.1| LIM/homeobox protein Lhx3 [Canis lupus familiaris]
gi|300837161|gb|ADK38612.1| LIM homeodomain protein 3 isoform LHX3b [Canis lupus familiaris]
Length = 403
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 61/106 (57%), Gaps = 6/106 (5%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD WH CLKC C L E + + + CK D+ + FGT CAAC IP
Sbjct: 51 ALDRHWHSKCLKCTDCHTPLAE---RCFSRGESVYCKDDFFKRFGTK--CAACQLGIPPT 105
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
++V RA++ VYHL CFAC C + GD FYL D++++C+ DYE
Sbjct: 106 QVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYE 151
>gi|449509307|ref|XP_002191188.2| PREDICTED: LIM/homeobox protein Lhx4-like, partial [Taeniopygia
guttata]
Length = 412
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 62/105 (59%), Gaps = 6/105 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH CLKC C +L E + +A + CK D+ + FGT C AC + IP +
Sbjct: 63 LDRHWHSSCLKCADCQMQLAE---RCFSRAGSVYCKEDFFKRFGTK--CTACQQGIPPTQ 117
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
+V +A++ VYHL CFAC C+ + GD FYL D +++C+ DYE
Sbjct: 118 VVRKAQDFVYHLHCFACIICSRQLATGDEFYLMEDGRLVCKEDYE 162
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 49/76 (64%), Gaps = 4/76 (5%)
Query: 31 ANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDR 90
++ +L R +LR FGT C AC + IP ++V +A++ VYHL CFAC C+ + GD
Sbjct: 269 SDSVLSFRAFLR-FGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICSRQLATGDE 325
Query: 91 FYLC-DNKILCEYDYE 105
FYL D +++C+ DYE
Sbjct: 326 FYLMEDGRLVCKEDYE 341
>gi|281354363|gb|EFB29947.1| hypothetical protein PANDA_009642 [Ailuropoda melanoleuca]
Length = 365
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 62/105 (59%), Gaps = 6/105 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH CLKC C +L + + +A + CK D+ + FGT C AC + IP +
Sbjct: 21 LDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFKRFGTK--CTACQQGIPPTQ 75
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
+V +A++ VYHL CF+C CN + GD FYL D +++C+ DYE
Sbjct: 76 VVRKAQDFVYHLHCFSCVICNRQLATGDEFYLMEDGRLVCKEDYE 120
>gi|291232097|ref|XP_002736028.1| PREDICTED: lim 1/5-like [Saccoglossus kowalevskii]
Length = 498
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 37/104 (35%), Positives = 60/104 (57%), Gaps = 6/104 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH C++C C+C L + Y + + C+ D++R +GT CA C+ I +
Sbjct: 21 LDRAWHVKCVQCSDCNCTLSD---KCYSREGKLYCRTDFVRRYGTK--CAGCSHGIAPND 75
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 104
+V RA+N V+HL+CF C C+ + G+ Y+ D N+ +C+ DY
Sbjct: 76 LVRRARNKVFHLKCFTCMVCSKQLSTGEELYVVDENQYICKDDY 119
>gi|334321803|ref|XP_001374523.2| PREDICTED: LIM/homeobox protein Lhx4-like [Monodelphis domestica]
Length = 391
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 62/105 (59%), Gaps = 6/105 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH CLKC C +L + + +A + CK D+ + FGT C AC + IP +
Sbjct: 47 LDRHWHGSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFKRFGTK--CTACQQGIPPTQ 101
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
+V +A++ VYHL CFAC CN + GD FYL D +++C+ DYE
Sbjct: 102 VVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYE 146
>gi|326924792|ref|XP_003208609.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx4-like
[Meleagris gallopavo]
Length = 384
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 62/105 (59%), Gaps = 6/105 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH CLKC C +L E + +A + CK D+ + FGT C AC + IP +
Sbjct: 43 LDRHWHSSCLKCADCQMQLAE---RCFARAGSVYCKEDFFKRFGTK--CTACQQGIPPTQ 97
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
+V +A++ VYHL CFAC C+ + GD FYL D +++C+ DYE
Sbjct: 98 VVRKAQDFVYHLHCFACIICSRQLATGDEFYLMEDGRLVCKEDYE 142
>gi|363736513|ref|XP_001235592.2| PREDICTED: LIM/homeobox protein Lhx4 [Gallus gallus]
Length = 374
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 62/105 (59%), Gaps = 6/105 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH CLKC C +L E + +A + CK D+ + FGT C AC + IP +
Sbjct: 32 LDRHWHSSCLKCADCQMQLAE---RCFARAGSVYCKEDFFKRFGTK--CTACQQGIPPTQ 86
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
+V +A++ VYHL CFAC C+ + GD FYL D +++C+ DYE
Sbjct: 87 VVRKAQDFVYHLHCFACIICSRQLATGDEFYLMEDGRLVCKEDYE 131
>gi|339252354|ref|XP_003371400.1| insulin protein enhancer protein ISL-1 [Trichinella spiralis]
gi|316968379|gb|EFV52660.1| insulin protein enhancer protein ISL-1 [Trichinella spiralis]
Length = 1751
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 55/153 (35%), Positives = 72/153 (47%), Gaps = 8/153 (5%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
DL WH CLKC C L E T + + CK DY+RLFG C+ C +V +
Sbjct: 1336 DLEWHAACLKCVDCRQFLDET-CTCFVRDGKPYCKLDYVRLFGVR--CSKCGEVFDRNDY 1392
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE--ERQVFCVGDRFYLCD 120
VMRAKNN+YH+ CF C C GD F L + C+ DYE ER C+
Sbjct: 1393 VMRAKNNLYHISCFKCVVCTRPLLPGDEFALRHIALYCKADYELAERNSLCLSTE---TS 1449
Query: 121 NKILCEYDYEERQVFANIAYNPSSLAHLRRQVT 153
N+ E + Q N ++PS + L + T
Sbjct: 1450 NESQLEEHSADVQATLNALHHPSGQSPLSSEST 1482
>gi|260793680|ref|XP_002591839.1| LIM class homeodomain transcription factor, Lhx3 subclass
[Branchiostoma floridae]
gi|229277050|gb|EEN47850.1| LIM class homeodomain transcription factor, Lhx3 subclass
[Branchiostoma floridae]
Length = 278
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 81/156 (51%), Gaps = 13/156 (8%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH CL+C C +L + + + + CK D+ R FGT CA C + IP +
Sbjct: 57 LDRSWHAKCLQCSDCQAQLTD---KCFSRDGHVYCKDDFFRRFGTK--CAGCGQGIPPTQ 111
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE---ERQVFCVGDRFY 117
+V RA++ +YHL+CFAC C + GD FYL D K++C+ DYE +R++ G +
Sbjct: 112 VVRRAQDKIYHLQCFACIMCKRQLATGDEFYLMEDAKLVCKSDYEAAKQREMELEGTQ-K 170
Query: 118 LCDNKILCEYDYEERQVFANIAYNPSSLAHLRRQVT 153
I + +Q + N +P H+R Q++
Sbjct: 171 RPRTTITAKQLETLKQAYQN---SPKPARHVREQLS 203
>gi|348535047|ref|XP_003455013.1| PREDICTED: LIM/homeobox protein Lhx3-like [Oreochromis niloticus]
Length = 400
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 63/105 (60%), Gaps = 6/105 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH CLKC C +L + + + + + CK D+ + FGT CAAC + IP +
Sbjct: 44 LDRHWHSKCLKCSDCQAQLAD---KCFTRGDSVYCKDDFFKRFGTK--CAACQQGIPPTQ 98
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
+V RA++ VYHL CFAC C + GD +YL D++++C+ DYE
Sbjct: 99 VVRRAQDFVYHLHCFACIVCKRQLATGDEYYLMEDSRLVCKADYE 143
>gi|348574776|ref|XP_003473166.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx3-like
[Cavia porcellus]
Length = 403
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 78/157 (49%), Gaps = 15/157 (9%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD WH CL+C C L E + + + CK D+ + FGT CAAC IP
Sbjct: 51 ALDRHWHSKCLRCSDCHTPLAE---RCFSRGESVYCKDDFFKRFGTK--CAACQLGIPPT 105
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE---ERQVFCVGDRF 116
++V RA++ VYHL CFAC C + GD FYL D++++C+ DYE +R+ R
Sbjct: 106 QVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYEAAKQREAEATAKR- 164
Query: 117 YLCDNKILCEYDYEERQVFANIAYNPSSLAHLRRQVT 153
+ E + N + P+ H+R Q++
Sbjct: 165 ---PRTTITAKQLETLKSAYNTSPKPAR--HVREQLS 196
>gi|444521209|gb|ELV13150.1| LIM/homeobox protein Lhx3 [Tupaia chinensis]
Length = 290
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 62/106 (58%), Gaps = 6/106 (5%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD WH CLKC CDC + + + + CK D+ + FGT CAAC IP
Sbjct: 47 ALDRHWHSQCLKC--CDCH-APLAERCFSRGESVYCKDDFFKRFGTK--CAACQLGIPPT 101
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
++V RA++ VYHL CFAC C + GD FYL D++++C+ DYE
Sbjct: 102 QVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYE 147
>gi|109019176|ref|XP_001115086.1| PREDICTED: LIM/homeobox protein Lhx4-like isoform 2 [Macaca
mulatta]
Length = 390
Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 61/105 (58%), Gaps = 6/105 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH CLKC C +L + + +A + CK D R FGT C AC + IP +
Sbjct: 46 LDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDPDRRFGTK--CTACQQGIPPTQ 100
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
+V +A++ VYHL CFAC CN + GD FYL D +++C+ DYE
Sbjct: 101 VVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYE 145
>gi|780314|gb|AAA73902.1| PLim [Mus musculus]
Length = 400
Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 78/157 (49%), Gaps = 15/157 (9%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD WH CLKC C L E + + + CK D+ + FGT CAAC IP
Sbjct: 49 ALDRHWHSKCLKCSDCHVPLAE---RCFSRRESVYCKDDFFKRFGTK--CAACQLGIPPT 103
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE---ERQVFCVGDRF 116
++V RA++ VYHL CFAC C + GD FYL D++++C+ DYE +R+ R
Sbjct: 104 QVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKR- 162
Query: 117 YLCDNKILCEYDYEERQVFANIAYNPSSLAHLRRQVT 153
+ E + N + P+ H+R Q++
Sbjct: 163 ---PRTTITAKQLETLKSAYNTSPKPAR--HVREQLS 194
>gi|354475897|ref|XP_003500163.1| PREDICTED: LIM/homeobox protein Lhx4 [Cricetulus griseus]
Length = 390
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 62/105 (59%), Gaps = 6/105 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH CLKC C +L + + +A + CK D+ + FGT C AC + IP +
Sbjct: 46 LDRHWHSSCLKCADCQMQLVD---RCFSRAGSVYCKEDFFKRFGTK--CTACQQGIPPTQ 100
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
+V +A++ VYHL CFAC CN + GD FYL D +++C+ DYE
Sbjct: 101 VVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYE 145
>gi|158299816|ref|XP_319836.3| AGAP009088-PA [Anopheles gambiae str. PEST]
gi|157013700|gb|EAA14726.3| AGAP009088-PA [Anopheles gambiae str. PEST]
Length = 389
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 81/162 (50%), Gaps = 20/162 (12%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
D WH CL+C C +L E + + + CK D+ + +GT CAAC IP ++
Sbjct: 58 DRTWHAKCLQCSECRVQLNE---KCFARNGQLFCKDDFFKRYGTK--CAACDLGIPPTQV 112
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDN-KILCEYDYEERQVFCVGDRFYLCDN 121
V RA++NVYHL+CF C C+ + GD FYL ++ K++C+ DYE + + YL D
Sbjct: 113 VRRAQDNVYHLQCFMCSMCSRQLNTGDEFYLMEDCKLICKPDYEAAKAKGL----YLSDG 168
Query: 122 KILCEYDYEERQVFANI--------AYN--PSSLAHLRRQVT 153
+ E + + AYN P H+R Q++
Sbjct: 169 SLDGESSNKRPRTTITAKQLETLKSAYNSSPKPARHVREQLS 210
>gi|348586764|ref|XP_003479138.1| PREDICTED: LIM/homeobox protein Lhx8-like [Cavia porcellus]
Length = 485
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 44/103 (42%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
DL WH CL C C LG ++ Y K I CK DY R +GT C+ C + I + +
Sbjct: 232 DLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYGTR--CSRCGRHIHSTDW 288
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RAK NVYHL CFAC C + G+ F L + K+LC Y+
Sbjct: 289 VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYD 331
>gi|2149584|gb|AAC53336.1| LIM-homeobox protein [Mus musculus]
Length = 190
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 62/105 (59%), Gaps = 6/105 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH CLKC C +L + + +A + CK D+ + FGT C AC + IP +
Sbjct: 17 LDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFKRFGTK--CTACQQGIPPTQ 71
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
+V +A++ VYHL CFAC CN + GD FYL D +++C+ DYE
Sbjct: 72 VVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYE 116
>gi|339961229|pdb|3MMK|A Chain A, The Structural Basis For Partial Redundancy In A Class Of
Transcription Factors, The Lim-Homeodomain Proteins, In
Neural Cell Type Specification
gi|339961230|pdb|3MMK|B Chain B, The Structural Basis For Partial Redundancy In A Class Of
Transcription Factors, The Lim-Homeodomain Proteins, In
Neural Cell Type Specification
Length = 169
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 64/105 (60%), Gaps = 6/105 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH CLKC DC++ ++ + +A + CK D+ + FGT C AC + IP +
Sbjct: 25 LDRHWHSSCLKCA--DCQM-QLADRCFSRAGSVYCKEDFFKRFGTK--CTACQQGIPPTQ 79
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
+V +A++ VYHL CFAC CN + GD FYL D +++C+ DYE
Sbjct: 80 VVRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGRLVCKEDYE 124
>gi|242011200|ref|XP_002426343.1| LIM/homeobox protein Lhx4, putative [Pediculus humanus corporis]
gi|212510420|gb|EEB13605.1| LIM/homeobox protein Lhx4, putative [Pediculus humanus corporis]
Length = 366
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 59/105 (56%), Gaps = 6/105 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH CL C C G + + + + CK D+ + FGT CA C + IP +
Sbjct: 40 LDRTWHAKCLNCNDCG---GPLTDKCFARNGQVYCKDDFFKRFGTK--CAGCEQGIPPTQ 94
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
+V RA+ NVYHL+CFAC C + GD FYL D K++C+ DYE
Sbjct: 95 VVRRAQENVYHLQCFACAMCARQLNTGDEFYLMEDKKLVCKPDYE 139
>gi|391327822|ref|XP_003738394.1| PREDICTED: LIM/homeobox protein Lhx3-like [Metaseiulus
occidentalis]
Length = 408
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 61/105 (58%), Gaps = 6/105 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
L+ WH CLKC C L + + +A + CK D+ + +GT CA C + IP +
Sbjct: 70 LERPWHSKCLKCSDCQAPLA---NKCFARAGHLYCKDDFFKRYGTK--CAGCEQGIPPTQ 124
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
+V RA+ NVYHL CF+C C + GD FYL DNK++C+ DYE
Sbjct: 125 VVRRAQENVYHLACFSCILCKRQLNTGDEFYLMEDNKLVCKADYE 169
>gi|171916111|ref|NP_001116445.1| LIM/homeobox protein Lhx4 [Danio rerio]
Length = 391
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 62/105 (59%), Gaps = 6/105 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH CLKC C L + + +A + CK D+ + FGT CA+C + IP +
Sbjct: 49 LDRHWHSKCLKCADCHALLAD---KCFSRAGNVYCKEDFFKRFGTK--CASCQQGIPPTQ 103
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
+V +A++ VYHL CFAC C+ + GD FYL D +++C+ DYE
Sbjct: 104 VVRKAQDFVYHLHCFACVMCSRQLATGDEFYLMEDGRLVCKEDYE 148
>gi|403266388|ref|XP_003925368.1| PREDICTED: LIM/homeobox protein Lhx4 [Saimiri boliviensis
boliviensis]
Length = 390
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 61/105 (58%), Gaps = 6/105 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH CLKC C +L + + +A + CK D+ + FGT C AC + IP +
Sbjct: 46 LDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFKRFGTK--CTACQQGIPPTQ 100
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
+V +A++ VYHL CFAC C + GD FYL D +++C+ DYE
Sbjct: 101 VVRKAQDFVYHLHCFACIICTRQLATGDEFYLMEDGRLVCKEDYE 145
>gi|296229653|ref|XP_002760359.1| PREDICTED: LIM/homeobox protein Lhx4 [Callithrix jacchus]
Length = 390
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 61/105 (58%), Gaps = 6/105 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH CLKC C +L + + +A + CK D+ + FGT C AC + IP +
Sbjct: 46 LDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFKRFGTK--CTACQQGIPPTQ 100
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
+V +A++ VYHL CFAC C + GD FYL D +++C+ DYE
Sbjct: 101 VVRKAQDFVYHLHCFACIICTRQLATGDEFYLMEDGRLVCKEDYE 145
>gi|196049633|pdb|2RGT|A Chain A, Crystal Structure Of Lhx3 Lim Domains 1 And 2 With The
Binding Domain Of Isl1
gi|196049634|pdb|2RGT|B Chain B, Crystal Structure Of Lhx3 Lim Domains 1 And 2 With The
Binding Domain Of Isl1
Length = 169
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 61/106 (57%), Gaps = 6/106 (5%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD WH CLKC C L E + + + CK D+ + FGT CAAC IP
Sbjct: 24 ALDRHWHSKCLKCSDCHVPLAE---RCFSRGESVYCKDDFFKRFGTK--CAACQLGIPPT 78
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
++V RA++ VYHL CFAC C + GD FYL D++++C+ DYE
Sbjct: 79 QVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYE 124
>gi|426222898|ref|XP_004005617.1| PREDICTED: LIM/homeobox protein Lhx3 [Ovis aries]
Length = 401
Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 78/159 (49%), Gaps = 15/159 (9%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
AL WH CLKC C L E + + + CK D+ + FGT CAAC IP
Sbjct: 49 ALGRHWHSKCLKCSDCHAPLAE---RCFSRGESVYCKDDFFKRFGTK--CAACQLGIPPT 103
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE---ERQVFCVGDRF 116
++V RA++ VYHL CFAC C + GD FYL D++++C+ DYE +R+ R
Sbjct: 104 QVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKR- 162
Query: 117 YLCDNKILCEYDYEERQVFANIAYNPSSLAHLRRQVTLQ 155
+ E + N + P+ H+R Q++ +
Sbjct: 163 ---PRTTITAKQLETLKSAYNTSPKPAR--HVREQLSSE 196
>gi|357611533|gb|EHJ67530.1| lim homeobox protein [Danaus plexippus]
Length = 481
Score = 85.1 bits (209), Expect = 8e-15, Method: Composition-based stats.
Identities = 41/104 (39%), Positives = 58/104 (55%), Gaps = 6/104 (5%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
D WH CL+C +CR + + + N + C D+ + +GT CA C + IP ++
Sbjct: 153 DRTWHAGCLRC--VECR-AMLSGKCFARNNQLYCTEDFFKRYGTK--CAGCGQGIPPTQV 207
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
V RA+ +VYHL CFAC C GD FYL D K++C+ DYE
Sbjct: 208 VRRAQAHVYHLRCFACAACARTLNTGDEFYLMEDGKLVCKPDYE 251
>gi|443690540|gb|ELT92649.1| hypothetical protein CAPTEDRAFT_219057 [Capitella teleta]
Length = 432
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 64/113 (56%), Gaps = 3/113 (2%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A DL WH CL+C C+ L E T + + CKRDY+RLFGT CA C++
Sbjct: 33 APDLEWHASCLRCTDCNQYLDE-SCTCFVRDGKTYCKRDYVRLFGTK--CARCSQSFSKN 89
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFCVG 113
+ VMRAKN +YH++CF C C+ + GD F L D+ + C+ D++ + G
Sbjct: 90 DFVMRAKNKIYHIDCFRCIACSRQLIPGDEFALRDDGLFCKADHDVVESASTG 142
>gi|190613352|pdb|2JTN|A Chain A, Nmr Solution Structure Of A Ldb1-Lid:lhx3-Lim Complex
Length = 182
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 61/106 (57%), Gaps = 6/106 (5%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD WH CLKC C L E + + + CK D+ + FGT CAAC IP
Sbjct: 78 ALDRHWHSKCLKCSDCHVPLAE---RCFSRGESVYCKDDFFKRFGTK--CAACQLGIPPT 132
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
++V RA++ VYHL CFAC C + GD FYL D++++C+ DYE
Sbjct: 133 QVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYE 178
>gi|359070468|ref|XP_002691651.2| PREDICTED: uncharacterized protein LOC100337389 [Bos taurus]
Length = 779
Score = 85.1 bits (209), Expect = 9e-15, Method: Composition-based stats.
Identities = 40/103 (38%), Positives = 57/103 (55%), Gaps = 5/103 (4%)
Query: 6 WHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMR 65
WHE+CL+C C L ++ Y + + CK+DY +LF C+ C + I E VMR
Sbjct: 453 WHEECLQCAACQQALT---TSCYFRDRKLYCKQDYQQLFAAK--CSGCMEKIAPTEFVMR 507
Query: 66 AKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQ 108
A VYHL CF C C + GD F L + ++LC+ DYE+ +
Sbjct: 508 ALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYEKEK 550
>gi|296482212|tpg|DAA24327.1| TPA: LIM homeobox transcription factor 1, beta-like [Bos taurus]
Length = 1019
Score = 85.1 bits (209), Expect = 9e-15, Method: Composition-based stats.
Identities = 40/103 (38%), Positives = 57/103 (55%), Gaps = 5/103 (4%)
Query: 6 WHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMR 65
WHE+CL+C C L ++ Y + + CK+DY +LF C+ C + I E VMR
Sbjct: 693 WHEECLQCAACQQALT---TSCYFRDRKLYCKQDYQQLFAAK--CSGCMEKIAPTEFVMR 747
Query: 66 AKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQ 108
A VYHL CF C C + GD F L + ++LC+ DYE+ +
Sbjct: 748 ALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYEKEK 790
>gi|120537751|gb|AAI29375.1| Lhx4 protein [Danio rerio]
Length = 244
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 62/105 (59%), Gaps = 6/105 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH CLKC C L + + +A + CK D+ + FGT CA+C + IP +
Sbjct: 47 LDRHWHSKCLKCADCHALLAD---KCFSRAGNVYCKEDFFKRFGTK--CASCQQGIPPTQ 101
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
+V +A++ VYHL CFAC C+ + GD FYL D +++C+ DYE
Sbjct: 102 VVRKAQDFVYHLHCFACVMCSRQLATGDEFYLMEDGRLVCKEDYE 146
>gi|449266486|gb|EMC77539.1| LIM/homeobox protein Lhx4, partial [Columba livia]
Length = 236
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 62/105 (59%), Gaps = 6/105 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH CLKC C +L + + +A + CK D+ + FGT C AC + IP +
Sbjct: 21 LDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFKRFGTK--CTACQQGIPPTQ 75
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
+V +A++ VYHL CFAC C+ + GD FYL D +++C+ DYE
Sbjct: 76 VVRKAQDFVYHLHCFACIICSRQLATGDEFYLMEDGRLVCKEDYE 120
>gi|171544941|ref|NP_001116387.1| LIM/homeobox protein Lhx3 [Oryzias latipes]
gi|157410515|gb|ABV53980.1| LIM/homeobox protein Lhx3 [Oryzias latipes]
Length = 401
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 63/106 (59%), Gaps = 7/106 (6%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYL-RLFGTTGYCAACTKVIPAF 60
LD WH CLKC C +L E + + + + CK D+ R FGT CAAC + IP
Sbjct: 46 LDRHWHGKCLKCSDCQAQLAE---KCFSRGDSVYCKDDFFKRRFGTK--CAACQQGIPPT 100
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
++V RA++ VYHL CFAC C + GD +YL D++++C+ DYE
Sbjct: 101 QVVRRAQDFVYHLHCFACIVCKRQLATGDEYYLMEDSRLVCKTDYE 146
>gi|431908379|gb|ELK11976.1| LIM domain only protein 3 [Pteropus alecto]
Length = 106
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/69 (59%), Positives = 48/69 (69%), Gaps = 1/69 (1%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLR + ++P
Sbjct: 28 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRTASSDSLLTNYDHLLPLL 87
Query: 61 EMVMRAKNN 69
+RA+N
Sbjct: 88 S-DLRAQNT 95
>gi|291397314|ref|XP_002715058.1| PREDICTED: LIM homeobox protein 4 [Oryctolagus cuniculus]
Length = 390
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 61/105 (58%), Gaps = 6/105 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH CLKC C +L + + +A CK D+ + FGT C AC + IP +
Sbjct: 46 LDRHWHSSCLKCADCQMQLAD---RCFSRAGSFYCKEDFFKRFGTK--CTACQQGIPPTQ 100
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
+V +A++ VYHL CFAC C+ + GD FYL D +++C+ DYE
Sbjct: 101 VVRKAQDFVYHLHCFACIICSRQLATGDEFYLMEDGRLVCKEDYE 145
>gi|126272190|ref|XP_001362509.1| PREDICTED: insulin gene enhancer protein ISL-2 [Monodelphis
domestica]
Length = 359
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 60/105 (57%), Gaps = 3/105 (2%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+ DL WH CLKC C L E T + + CKRDY+RLFG CA C +
Sbjct: 43 SPDLEWHAACLKCAECSQYLDET-CTCFVRNGKTYCKRDYIRLFGIK--CAKCKVGFSSS 99
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
++VMRA+ NVYH+ECF C C+ + GD F L D+++LC D+
Sbjct: 100 DLVMRARENVYHIECFRCSVCSRQLLPGDEFSLRDHELLCRADHS 144
>gi|432853477|ref|XP_004067726.1| PREDICTED: LIM/homeobox protein Lhx8 [Oryzias latipes]
Length = 338
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
DL WH CL C C LG S Y K I CK DY R +GT +CA C + I + +
Sbjct: 72 DLCWHVRCLSCSVCQTSLGSHAS-CYIKEKEIFCKLDYFRRYGT--WCACCGRNIHSTDW 128
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RAK NVYHL CFAC C + G+ F L + K+LC Y+
Sbjct: 129 VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEGKVLCRIHYD 171
>gi|195164562|ref|XP_002023115.1| GL21181 [Drosophila persimilis]
gi|194105200|gb|EDW27243.1| GL21181 [Drosophila persimilis]
Length = 436
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 81/158 (51%), Gaps = 15/158 (9%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
L+ WH CL+C C G++ + + + CK D+ + +GT C+AC IP +
Sbjct: 64 LERTWHAKCLQCSECH---GQLNDKCFARNGQLFCKEDFFKRYGTK--CSACDMGIPPTQ 118
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYEE---RQVFCVGDRFY 117
+V RA+++VYHL+CF C C+ GD FYL D K++C+ DYEE + ++ GD+
Sbjct: 119 VVRRAQDHVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICKRDYEEAKAKGLYLDGDQPN 178
Query: 118 LCDNKILCEYDYEERQVFANIAYN--PSSLAHLRRQVT 153
+ E + AYN P H+R Q++
Sbjct: 179 KRPRTTITAKQLETLKT----AYNNSPKPARHVREQLS 212
>gi|291237424|ref|XP_002738638.1| PREDICTED: Lim homeobox transcription factor [Saccoglossus
kowalevskii]
Length = 441
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/101 (45%), Positives = 58/101 (57%), Gaps = 5/101 (4%)
Query: 6 WHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMR 65
WHE CL+C C L + Y K + CK DY +LFGT C C + I + E+VMR
Sbjct: 61 WHEQCLQCSVCQSPLSR---SCYFKDRKLYCKGDYEKLFGTK--CNGCLQSITSNELVMR 115
Query: 66 AKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
A NVYHL CF C CN R GD F + DN++ C+ DYE+
Sbjct: 116 ALCNVYHLRCFNCIICNQRLQKGDEFVVRDNQLFCKVDYEK 156
>gi|1708565|sp|P53409.1|ISL3_ONCTS RecName: Full=Insulin gene enhancer protein ISL-3; Short=Islet-3
Length = 363
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 60/105 (57%), Gaps = 3/105 (2%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+ DL WH CLKC C L E T + + CKRDY+RLFG CA C +
Sbjct: 43 SPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDYVRLFGIK--CAKCNLGFSSS 99
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
++VMRA++NVYH+ECF C C+ + GD F L D ++LC D+
Sbjct: 100 DLVMRARDNVYHIECFRCSVCSRQLLPGDEFSLRDEELLCRADHS 144
>gi|114626799|ref|XP_001141606.1| PREDICTED: LIM homeobox transcription factor 1-beta [Pan
troglodytes]
Length = 623
Score = 84.3 bits (207), Expect = 1e-14, Method: Composition-based stats.
Identities = 40/103 (38%), Positives = 57/103 (55%), Gaps = 5/103 (4%)
Query: 6 WHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMR 65
WHE+CL+C C L ++ Y + + CK+DY +LF C+ C + I E VMR
Sbjct: 297 WHEECLQCAACQQALT---TSCYFRDRKLYCKQDYQQLFAAK--CSGCMEKIAPTEFVMR 351
Query: 66 AKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQ 108
A VYHL CF C C + GD F L + ++LC+ DYE+ +
Sbjct: 352 ALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYEKEK 394
>gi|189237525|ref|XP_973330.2| PREDICTED: similar to lim homeobox protein [Tribolium castaneum]
Length = 448
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 82/158 (51%), Gaps = 16/158 (10%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
D WH CL+C DCR+ ++ + + + CK D+ + FGT CA C IP ++
Sbjct: 118 DRTWHAKCLQC--SDCRI-QLTDKCFARNGQLFCKEDFFKRFGTK--CAGCDLGIPPTQV 172
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYEERQVFCV----GDRFY 117
V RA++NVYHL+CF+C C + GD FYL D K++C+ DYE + GD+
Sbjct: 173 VRRAQDNVYHLQCFSCVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKSKAAECLDGDQ-- 230
Query: 118 LCDNKILCEYDYEERQVFANIAYN--PSSLAHLRRQVT 153
+ + ++ + N AYN P H+R Q++
Sbjct: 231 -PNKRPRTTITAKQLETLKN-AYNNSPKPARHVREQLS 266
>gi|270007707|gb|EFA04155.1| hypothetical protein TcasGA2_TC014400 [Tribolium castaneum]
Length = 415
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 82/158 (51%), Gaps = 16/158 (10%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
D WH CL+C DCR+ ++ + + + CK D+ + FGT CA C IP ++
Sbjct: 85 DRTWHAKCLQC--SDCRI-QLTDKCFARNGQLFCKEDFFKRFGTK--CAGCDLGIPPTQV 139
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYEERQVFCV----GDRFY 117
V RA++NVYHL+CF+C C + GD FYL D K++C+ DYE + GD+
Sbjct: 140 VRRAQDNVYHLQCFSCVMCARQLNTGDEFYLMEDRKLVCKPDYEAAKSKAAECLDGDQ-- 197
Query: 118 LCDNKILCEYDYEERQVFANIAYN--PSSLAHLRRQVT 153
+ + ++ + N AYN P H+R Q++
Sbjct: 198 -PNKRPRTTITAKQLETLKN-AYNNSPKPARHVREQLS 233
>gi|2641222|gb|AAB86860.1| homeobox protein LIM-3 [Danio rerio]
Length = 374
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 81/160 (50%), Gaps = 19/160 (11%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH CLKC C +L + + + + + CK D+ + FGT CAAC + IP +
Sbjct: 20 LDRHWHSKCLKCSDCQSQLAD---KCFSRGDSVYCKDDFFKRFGTK--CAACQQGIPPTQ 74
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE---ERQVFCVGDRFY 117
+V RA++ VYHL C AC C + GD +YL D++++C+ DYE +R+ R
Sbjct: 75 VVRRAQDFVYHLHCNACIVCKRQLATGDEYYLMEDSRLVCKADYETAKQREADSTAKRPR 134
Query: 118 LCDNKILCEYDYEERQVFANIAYN--PSSLAHLRRQVTLQ 155
++ + N AYN P H+R Q++ +
Sbjct: 135 TT-------ITAKQLETLKN-AYNNSPKPARHVREQLSTE 166
>gi|334853818|gb|AEH05849.1| Lhx3, partial [Capra hircus]
gi|334853820|gb|AEH05850.1| Lhx3, partial [Capra hircus]
Length = 124
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 61/106 (57%), Gaps = 6/106 (5%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD WH CLKC C L E + + + CK D+ + FGT CAAC IP
Sbjct: 19 ALDRHWHSKCLKCSDCHAPLAE---RCFSRGESVYCKDDFFKRFGTK--CAACQLGIPPT 73
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
++V RA++ VYHL CFAC C + GD FYL D++++C+ DYE
Sbjct: 74 QVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYE 119
>gi|195438224|ref|XP_002067037.1| GK24239 [Drosophila willistoni]
gi|194163122|gb|EDW78023.1| GK24239 [Drosophila willistoni]
Length = 448
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 63/109 (57%), Gaps = 6/109 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
L+ WH CL+C C G++ + + + CK D+ + +GT C+AC IP +
Sbjct: 58 LERTWHAKCLQCSECH---GQLNDKCFARNGQLFCKEDFFKRYGTK--CSACDMGIPPTQ 112
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYEERQV 109
+V RA++NVYHL+CF C C+ GD FYL D K++C+ DYEE +
Sbjct: 113 VVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICKRDYEEAKA 161
>gi|4106560|gb|AAD02889.1| LIM homeodomain transcription factor [Drosophila melanogaster]
Length = 440
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 63/109 (57%), Gaps = 6/109 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
L+ WH CL+C C G++ + + + CK D+ + +GT C+AC IP +
Sbjct: 58 LERTWHAKCLQCSECH---GQLNDKCFARNGQLFCKEDFFKRYGTK--CSACDMGIPPTQ 112
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYEERQV 109
+V RA++NVYHL+CF C C+ GD FYL D K++C+ DYEE +
Sbjct: 113 VVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICKRDYEEAKA 161
>gi|17136270|ref|NP_476606.1| Lim3, isoform A [Drosophila melanogaster]
gi|7298537|gb|AAF53756.1| Lim3, isoform A [Drosophila melanogaster]
Length = 440
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 63/109 (57%), Gaps = 6/109 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
L+ WH CL+C C G++ + + + CK D+ + +GT C+AC IP +
Sbjct: 58 LERTWHAKCLQCSECH---GQLNDKCFARNGQLFCKEDFFKRYGTK--CSACDMGIPPTQ 112
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYEERQV 109
+V RA++NVYHL+CF C C+ GD FYL D K++C+ DYEE +
Sbjct: 113 VVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICKRDYEEAKA 161
>gi|195580083|ref|XP_002079885.1| GD21780 [Drosophila simulans]
gi|194191894|gb|EDX05470.1| GD21780 [Drosophila simulans]
Length = 438
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 63/109 (57%), Gaps = 6/109 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
L+ WH CL+C C G++ + + + CK D+ + +GT C+AC IP +
Sbjct: 58 LERTWHAKCLQCSECH---GQLNDKCFARNGQLFCKEDFFKRYGTK--CSACDMGIPPTQ 112
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYEERQV 109
+V RA++NVYHL+CF C C+ GD FYL D K++C+ DYEE +
Sbjct: 113 VVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICKRDYEEAKA 161
>gi|194879752|ref|XP_001974294.1| GG21652 [Drosophila erecta]
gi|190657481|gb|EDV54694.1| GG21652 [Drosophila erecta]
Length = 442
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 63/109 (57%), Gaps = 6/109 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
L+ WH CL+C C G++ + + + CK D+ + +GT C+AC IP +
Sbjct: 58 LERTWHAKCLQCSECH---GQLNDKCFARNGQLFCKEDFFKRYGTK--CSACDMGIPPTQ 112
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYEERQV 109
+V RA++NVYHL+CF C C+ GD FYL D K++C+ DYEE +
Sbjct: 113 VVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICKRDYEEAKA 161
>gi|46276323|gb|AAS86420.1| lhx7 [Oryzias latipes]
Length = 191
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
DL WH CL C C LG S Y K I CK DY R +GT +CA C + I + +
Sbjct: 4 DLCWHVRCLSCSVCQTSLGSHAS-CYIKEKEIFCKLDYFRRYGT--WCACCGRNIHSTDW 60
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RAK NVYHL CFAC C + G+ F L + K+LC Y+
Sbjct: 61 VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEGKVLCRIHYD 103
>gi|386769869|ref|NP_001246087.1| Lim3, isoform E [Drosophila melanogaster]
gi|383291572|gb|AFH03761.1| Lim3, isoform E [Drosophila melanogaster]
Length = 405
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 63/109 (57%), Gaps = 6/109 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
L+ WH CL+C C G++ + + + CK D+ + +GT C+AC IP +
Sbjct: 23 LERTWHAKCLQCSECH---GQLNDKCFARNGQLFCKEDFFKRYGTK--CSACDMGIPPTQ 77
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYEERQV 109
+V RA++NVYHL+CF C C+ GD FYL D K++C+ DYEE +
Sbjct: 78 VVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICKRDYEEAKA 126
>gi|195484367|ref|XP_002090664.1| GE12672 [Drosophila yakuba]
gi|194176765|gb|EDW90376.1| GE12672 [Drosophila yakuba]
Length = 442
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 63/109 (57%), Gaps = 6/109 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
L+ WH CL+C C G++ + + + CK D+ + +GT C+AC IP +
Sbjct: 58 LERTWHAKCLQCSECH---GQLNDKCFARNGQLFCKEDFFKRYGTK--CSACDMGIPPTQ 112
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYEERQV 109
+V RA++NVYHL+CF C C+ GD FYL D K++C+ DYEE +
Sbjct: 113 VVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICKRDYEEAKA 161
>gi|328925118|dbj|BAK19074.1| Bmptp-Z and Bmap-A fusion protein alpha [Bombyx mori]
Length = 466
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 42/106 (39%), Positives = 61/106 (57%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
AL+ WH CL+C C+C++ + Y + + I CK DY+RL+G CA C VI A
Sbjct: 147 ALERRWHTPCLRC--CECKMPLDSEQRCYARDSNIFCKNDYIRLYGPK-RCARCNTVISA 203
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
E+VMRA++ V+H+ CF+C CN GD + + D + C YE
Sbjct: 204 SELVMRARDLVFHVHCFSCALCNTPLNKGDTYGIRDAAVYCRLHYE 249
>gi|348505012|ref|XP_003440055.1| PREDICTED: LIM/homeobox protein Lhx8-like [Oreochromis niloticus]
Length = 338
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 57/103 (55%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
DL WH CL C C LG ++ Y K + CK DY R +GT +CA C + I + +
Sbjct: 72 DLCWHVRCLSCSVCQTSLGS-HTSCYIKEKEVFCKLDYFRRYGT--WCACCGRNIHSTDW 128
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RAK NVYHL CFAC C + G+ F L + K+LC Y+
Sbjct: 129 VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEGKVLCRVHYD 171
>gi|194759358|ref|XP_001961916.1| GF15212 [Drosophila ananassae]
gi|190615613|gb|EDV31137.1| GF15212 [Drosophila ananassae]
Length = 444
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 63/109 (57%), Gaps = 6/109 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
L+ WH CL+C C G++ + + + CK D+ + +GT C+AC IP +
Sbjct: 58 LERTWHAKCLQCSECH---GQLNDKCFARNGQLFCKEDFFKRYGTK--CSACDMGIPPTQ 112
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYEERQV 109
+V RA++NVYHL+CF C C+ GD FYL D K++C+ DYEE +
Sbjct: 113 VVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICKRDYEEAKA 161
>gi|358342505|dbj|GAA49955.1| LIM domain only protein 3, partial [Clonorchis sinensis]
Length = 190
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 47/70 (67%)
Query: 43 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEY 102
L+G TG C C K I FE VMR + NVYHL CF CQ+C RFC+GD+FYL + ILCE
Sbjct: 1 LYGKTGICVVCLKRILGFEFVMRIQENVYHLNCFCCQRCQLRFCIGDKFYLQNKTILCEQ 60
Query: 103 DYEERQVFCV 112
DY + ++ +
Sbjct: 61 DYIDSKMLSI 70
>gi|115727487|ref|XP_782032.2| PREDICTED: LIM/homeobox protein Lhx9 [Strongylocentrotus
purpuratus]
Length = 474
Score = 83.6 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 43/105 (40%), Positives = 58/105 (55%), Gaps = 2/105 (1%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A D WH CL+C C+ +L S ++ N I CK DYL+ +G CA C I +
Sbjct: 69 AADRQWHTQCLQCCECNVQLDSELSCFAKEGN-IYCKEDYLKRYGIKK-CARCHVGIESH 126
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA+ VYHL CF+C CN GD + + +N + C+ YE
Sbjct: 127 EMVMRARELVYHLACFSCAVCNLELHTGDYYGMRENLVYCQLHYE 171
>gi|47228451|emb|CAG05271.1| unnamed protein product [Tetraodon nigroviridis]
Length = 579
Score = 83.6 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 38/104 (36%), Positives = 57/104 (54%), Gaps = 6/104 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH C++C C C L E + + + CK D+ R FGT CA C + I +
Sbjct: 180 LDRAWHAKCVQCCECSCNLTE---KCFSRDGKLYCKMDFFRRFGTK--CAGCLQGISPND 234
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 104
+V +A++ V+HL CF C CN + G+ Y+ D NK +C+ D+
Sbjct: 235 LVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKEDF 278
>gi|241738273|ref|XP_002414047.1| rhombotin, putative [Ixodes scapularis]
gi|215507901|gb|EEC17355.1| rhombotin, putative [Ixodes scapularis]
Length = 173
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/42 (88%), Positives = 38/42 (90%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 42
ALD WHEDCLKC CCDCRLGEVGSTL+ KANLILCKRDYLR
Sbjct: 88 ALDQLWHEDCLKCACCDCRLGEVGSTLFTKANLILCKRDYLR 129
>gi|390339027|ref|XP_781774.3| PREDICTED: insulin gene enhancer protein ISL-1-like
[Strongylocentrotus purpuratus]
Length = 402
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 69/125 (55%), Gaps = 10/125 (8%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A DL WH CLKC C L E T + + CKRDYLRLFGT CA C++
Sbjct: 67 APDLEWHAACLKCADCCTYLDET-CTCFVRDGKPYCKRDYLRLFGTK--CAKCSQGFTKN 123
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE--ER-----QVFCVG 113
+ VMRA+N +YH++CF C C+ + GD F L ++ + C+ D+E ER QV V
Sbjct: 124 DFVMRARNKIYHIDCFRCVACSRQLIPGDEFALREDGLFCKADHEVMERPGDRDQVPNVN 183
Query: 114 DRFYL 118
R Y+
Sbjct: 184 HRNYI 188
>gi|348508944|ref|XP_003442012.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like
[Oreochromis niloticus]
Length = 368
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 61/108 (56%), Gaps = 6/108 (5%)
Query: 6 WHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMR 65
WHE C+KC C L + T Y + L+ CK DY +LF C+AC +VI E++MR
Sbjct: 51 WHETCVKCAVC---LSALTGTCYSRDRLLYCKHDYEKLF--VRKCSACLQVIGRSELIMR 105
Query: 66 AKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE-ERQVFCV 112
VYHL CF+C +C R GD F L + ++LC DYE ER++
Sbjct: 106 VLGQVYHLGCFSCCECERRLQRGDEFVLKEGQLLCRMDYEKEREMLAA 153
>gi|410921222|ref|XP_003974082.1| PREDICTED: LIM/homeobox protein Lhx8-like [Takifugu rubripes]
Length = 324
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 57/103 (55%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
DL WH CL C C LG ++ Y K + CK DY R +GT +CA C + I + +
Sbjct: 72 DLCWHVRCLSCSVCHTSLGS-HTSCYIKEKEVFCKMDYFRRYGT--WCACCGRNIHSTDW 128
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RAK NVYHL CFAC C + G+ F L + K+LC Y+
Sbjct: 129 VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYD 171
>gi|390458375|ref|XP_002743346.2| PREDICTED: LIM homeobox transcription factor 1-beta [Callithrix
jacchus]
Length = 638
Score = 83.6 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 40/103 (38%), Positives = 57/103 (55%), Gaps = 5/103 (4%)
Query: 6 WHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMR 65
WHE+CL+C C L ++ Y + + CK+DY +LF C+ C + I E VMR
Sbjct: 312 WHEECLQCAACQQALT---TSCYFRDRKLYCKQDYQQLFAAK--CSGCMEKIAPTEFVMR 366
Query: 66 AKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQ 108
A VYHL CF C C + GD F L + ++LC+ DYE+ +
Sbjct: 367 ALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYEKEK 409
>gi|1708558|sp|P50212.1|ISL2B_ONCTS RecName: Full=Insulin gene enhancer protein ISL-2B; Short=Islet-2B
gi|64209|emb|CAA46102.1| isl-1 [Oncorhynchus tshawytscha]
gi|1094403|prf||2106150A LIM domain homeobox protein
Length = 340
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/104 (44%), Positives = 60/104 (57%), Gaps = 3/104 (2%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A DL WH CLKC C L E T + + CKRDY+RLFG CA C +
Sbjct: 25 APDLEWHAACLKCSECSQYLDET-CTCFVRDGKTYCKRDYVRLFGIK--CAKCNIGFCSS 81
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 104
++VMRA++NVYH+ECF C C+ + GD F L D ++LC D+
Sbjct: 82 DLVMRARDNVYHMECFRCSVCSRQLVPGDEFSLRDEELLCRADH 125
>gi|348505840|ref|XP_003440468.1| PREDICTED: insulin gene enhancer protein isl-2a-like [Oreochromis
niloticus]
Length = 359
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 60/104 (57%), Gaps = 3/104 (2%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+ DL WH CLKC C+ L E T + + CKRDY RLFG CA C +
Sbjct: 43 SPDLEWHAACLKCAECNQHLDET-CTCFVRDGKTYCKRDYARLFGIK--CAKCNMGFCSS 99
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 104
++VMRA++NVYH+ECF C C+ GD F L D+++LC D+
Sbjct: 100 DLVMRARDNVYHMECFRCSVCSRHLLPGDEFSLRDDELLCRADH 143
>gi|410979495|ref|XP_003996119.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx3 [Felis
catus]
Length = 309
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 61/106 (57%), Gaps = 6/106 (5%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD WH CL+C C L E + + + CK D+ + FGT CAAC IP
Sbjct: 49 ALDRHWHSKCLRCSDCHAPLAE---RCFSRGESVYCKDDFFKRFGTK--CAACQLGIPPT 103
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRF-YLCDNKILCEYDYE 105
++V RA++ VYHL CFAC C + GD F ++ D++++C+ DYE
Sbjct: 104 QVVRRAQDFVYHLHCFACVVCKRQLATGDEFSFMEDSRLVCKADYE 149
>gi|156364672|ref|XP_001626470.1| predicted protein [Nematostella vectensis]
gi|156213347|gb|EDO34370.1| predicted protein [Nematostella vectensis]
Length = 304
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 58/112 (51%), Gaps = 3/112 (2%)
Query: 6 WHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMR 65
WH CLKC C LG +T Y K I CK DY R FGT CA C + I A + V R
Sbjct: 48 WHTKCLKCCLCSDELGRE-ATCYTKDGKIYCKADYARQFGTK--CARCGRSIHANDWVRR 104
Query: 66 AKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFCVGDRFY 117
AKN VYHL CFAC C + G+ F L D +LC+ Y E +R Y
Sbjct: 105 AKNCVYHLACFACDNCKRQLSTGEEFALKDGHVLCKLHYLEALDTSPAERDY 156
>gi|123907024|sp|Q1LWV4.1|LHX9_DANRE RecName: Full=LIM/homeobox protein Lhx9; Short=LIM homeobox protein
9
gi|94732381|emb|CAK04966.1| novel protein similar to vertebrate LIM homeobox 9 (LHX9) [Danio
rerio]
gi|190339118|gb|AAI63023.1| Lhx9 protein [Danio rerio]
gi|190339147|gb|AAI63060.1| Lhx9 protein [Danio rerio]
gi|190339149|gb|AAI63073.1| Lhx9 protein [Danio rerio]
Length = 396
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 86 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 142
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA+++VYHL CF C CN GD F + DN + C +E
Sbjct: 143 SEMVMRARDSVYHLSCFTCTTCNKTLTTGDHFGMKDNLVYCRVHFE 188
>gi|195050066|ref|XP_001992820.1| GH13485 [Drosophila grimshawi]
gi|193899879|gb|EDV98745.1| GH13485 [Drosophila grimshawi]
Length = 451
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 63/109 (57%), Gaps = 6/109 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
L+ WH CL+C C +L + + + + CK D+ + +GT C+AC IP +
Sbjct: 58 LERTWHAKCLQCSECHSQLND---KCFARNGQLFCKEDFFKRYGTK--CSACDMGIPPTQ 112
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYEERQV 109
+V RA++NVYHL+CF C C+ GD FYL D K++C+ DYEE +
Sbjct: 113 VVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICKRDYEEAKA 161
>gi|62955397|ref|NP_001017710.1| LIM/homeobox protein Lhx9 isoform 1 [Danio rerio]
gi|62205415|gb|AAH93258.1| LIM homeobox 9 [Danio rerio]
Length = 330
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 86 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 142
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA+++VYHL CF C CN GD F + DN + C +E
Sbjct: 143 SEMVMRARDSVYHLSCFTCTTCNKTLTTGDHFGMKDNLVYCRVHFE 188
>gi|82524343|ref|NP_001032320.1| LIM/homeobox protein Lhx9 isoform 2 [Danio rerio]
gi|76667071|dbj|BAE45355.1| LIM homeodomain type transcription factor Lhx9 [Danio rerio]
Length = 395
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 86 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCAHCHLGISA 142
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA+++VYHL CF C CN GD F + DN + C +E
Sbjct: 143 SEMVMRARDSVYHLSCFTCTTCNKTLTTGDHFGMKDNLVYCRVHFE 188
>gi|395501088|ref|XP_003754930.1| PREDICTED: insulin gene enhancer protein ISL-2 [Sarcophilus
harrisii]
Length = 335
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 60/104 (57%), Gaps = 3/104 (2%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+ DL WH CLKC C L E T + + CKRDY+RLFG CA C +
Sbjct: 18 SPDLEWHAACLKCAECSQYLDET-CTCFVRNGKTYCKRDYIRLFGIK--CAKCKVGFSSS 74
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 104
++VMRA+ NVYH+ECF C C+ + GD F L ++++LC D+
Sbjct: 75 DLVMRARENVYHIECFRCSVCSRQLLPGDEFSLREHELLCRADH 118
>gi|195115252|ref|XP_002002178.1| GI17237 [Drosophila mojavensis]
gi|193912753|gb|EDW11620.1| GI17237 [Drosophila mojavensis]
Length = 449
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 63/109 (57%), Gaps = 6/109 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
L+ WH CL+C C +L + + + + CK D+ + +GT C+AC IP +
Sbjct: 58 LERTWHAKCLQCSECHAQLND---KCFARNGQLFCKEDFFKRYGTK--CSACDMGIPPTQ 112
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYEERQV 109
+V RA++NVYHL+CF C C+ GD FYL D K++C+ DYEE +
Sbjct: 113 VVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICKRDYEEAKA 161
>gi|260828933|ref|XP_002609417.1| LIM class homeodomain transcription factor, Lhx6/8 subclass
[Branchiostoma floridae]
gi|229294773|gb|EEN65427.1| LIM class homeodomain transcription factor, Lhx6/8 subclass
[Branchiostoma floridae]
Length = 292
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 57/101 (56%), Gaps = 3/101 (2%)
Query: 6 WHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMR 65
WH CL+C C LG +T Y + + CK DY+R FGT CA C + I + + V R
Sbjct: 71 WHVKCLRCSVCQTPLGRH-TTCYTREADVFCKADYIRQFGTK--CAKCCRNIQSNDWVRR 127
Query: 66 AKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
AK +VYHL CFAC C + G+ F L D K+LC+ Y E
Sbjct: 128 AKTHVYHLACFACDACKRQLSTGEEFALHDGKVLCKSHYLE 168
>gi|345326124|ref|XP_001508297.2| PREDICTED: hypothetical protein LOC100077000 [Ornithorhynchus
anatinus]
Length = 553
Score = 82.8 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 40/103 (38%), Positives = 57/103 (55%), Gaps = 5/103 (4%)
Query: 6 WHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMR 65
WHE+CL+C C L ++ Y + + CK+DY +LF C+ C + I E VMR
Sbjct: 229 WHEECLQCAACQQALT---TSCYFRDRKLYCKQDYQQLFAAK--CSGCLEKIAPTEFVMR 283
Query: 66 AKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQ 108
A VYHL CF C C + GD F L + ++LC+ DYE+ +
Sbjct: 284 ALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKSDYEKEK 326
>gi|68448499|ref|NP_001020339.1| LIM homeobox transcription factor 1, beta a [Danio rerio]
gi|62461839|gb|AAX83056.1| LIM homeodomain protein [Danio rerio]
gi|190337362|gb|AAI63321.1| LIM homeobox transcription factor 1, beta 2 [Danio rerio]
gi|190339774|gb|AAI63333.1| LIM homeobox transcription factor 1, beta 2 [Danio rerio]
Length = 373
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 61/112 (54%), Gaps = 5/112 (4%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
D WHE+CL+C C L + Y + + + CK DY +LF T C+ C + I E+
Sbjct: 48 DSSWHEECLQCSVCQQLLT---MSCYSRDHKLYCKHDYQQLFATK--CSGCLEKISPTEL 102
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFCVGD 114
VMRA +VYHL CF C C R C GD F L + ++LC+ DYE + D
Sbjct: 103 VMRALESVYHLSCFCCCVCERRLCKGDEFVLKEGQLLCKTDYEREKDLASPD 154
>gi|48375213|gb|AAT42259.1| LIM homeodomain protein Lmx1b.2 [Danio rerio]
Length = 375
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 61/112 (54%), Gaps = 5/112 (4%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
D WHE+CL+C C L + Y + + + CK DY +LF T C+ C + I E+
Sbjct: 50 DSSWHEECLQCSVCQQLLT---MSCYSRDHKLYCKHDYQQLFATK--CSGCLEKISPTEL 104
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFCVGD 114
VMRA +VYHL CF C C R C GD F L + ++LC+ DYE + D
Sbjct: 105 VMRALESVYHLSCFCCCVCERRLCKGDEFVLKEGQLLCKTDYEREKDLASPD 156
>gi|348500124|ref|XP_003437623.1| PREDICTED: insulin gene enhancer protein ISL-3-like [Oreochromis
niloticus]
Length = 360
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 60/105 (57%), Gaps = 3/105 (2%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+ DL WH CLKC C L E T + + CKRDY+RLFG CA C +
Sbjct: 43 SPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDYVRLFGIK--CAKCNLGFSSS 99
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
++VMRA++NVYH+ECF C C+ + GD F L + ++LC D+
Sbjct: 100 DLVMRARDNVYHIECFRCSVCSRQLLPGDEFSLREEELLCRADHS 144
>gi|156398319|ref|XP_001638136.1| predicted protein [Nematostella vectensis]
gi|156225254|gb|EDO46073.1| predicted protein [Nematostella vectensis]
Length = 329
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 60/105 (57%), Gaps = 3/105 (2%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A DL WH CLKC C L E T + + CKRDY+RLFGT CA C+
Sbjct: 33 APDLEWHASCLKCADCHMYLDE-KCTCFVREGKTYCKRDYVRLFGTK--CAKCSLNFSKN 89
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
+ VMRA+N +YH++CF C C+ + GD F L ++ + C+ D+E
Sbjct: 90 DFVMRARNKIYHIDCFRCVACSRQLVPGDEFALREDGLFCKADHE 134
>gi|339236177|ref|XP_003379643.1| LIM/homeobox protein Awh [Trichinella spiralis]
gi|316977684|gb|EFV60755.1| LIM/homeobox protein Awh [Trichinella spiralis]
Length = 902
Score = 82.4 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 40/102 (39%), Positives = 55/102 (53%), Gaps = 3/102 (2%)
Query: 5 FWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVM 64
FWH +CL+C C L ++ S Y K + + CK Y R F C C +VI + V
Sbjct: 642 FWHVNCLRCSSCTALLDKLPSC-YLKEDKVFCKMCYQRQFSVK--CDRCNQVIQSNHWVR 698
Query: 65 RAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
RA+ VYHL CFAC C + G+ F L D+++LC+ Y E
Sbjct: 699 RARQYVYHLACFACDSCQRQLSTGEEFALQDSRVLCKQHYME 740
>gi|126306413|ref|XP_001367734.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 1 [Monodelphis
domestica]
gi|395531043|ref|XP_003767592.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 1 [Sarcophilus
harrisii]
Length = 388
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 58/106 (54%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 77 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 133
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA+ +VYHL CF C CN GD F + DN + C +E
Sbjct: 134 SEMVMRARESVYHLSCFTCTTCNKTLTTGDHFGMKDNLVYCRAHFE 179
>gi|260794981|ref|XP_002592485.1| LIM class homeodomain transcription factor, apterous subclass
[Branchiostoma floridae]
gi|229277705|gb|EEN48496.1| LIM class homeodomain transcription factor, apterous subclass
[Branchiostoma floridae]
Length = 452
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 62/106 (58%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK+DY R F + CA C I A
Sbjct: 75 AVDKQWHLHCLKC--CECKLRLESELTCFAKDGSIYCKQDYYRRF-SVKRCARCHLGISA 131
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA++ V+HL CF C+ CN GD++ + + + C YDYE
Sbjct: 132 SEMVMRARDLVFHLNCFMCETCNRPLTTGDQYGMRGDTVYCRYDYE 177
>gi|345312248|ref|XP_001512401.2| PREDICTED: rhombotin-1-like, partial [Ornithorhynchus anatinus]
Length = 88
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 37/42 (88%), Positives = 39/42 (92%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 42
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLR
Sbjct: 47 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLR 88
>gi|326924940|ref|XP_003208680.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 1 [Meleagris
gallopavo]
Length = 338
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 58/107 (54%), Gaps = 4/107 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 27 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 83
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EMVMRA+ +VYHL CF C CN GD F + DN + C +E
Sbjct: 84 SEMVMRARESVYHLSCFTCTTCNKTLTTGDHFGMKDNLVYCRAHFES 130
>gi|311213854|ref|NP_001185656.1| LIM homeobox 9 [Taeniopygia guttata]
Length = 378
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 58/107 (54%), Gaps = 4/107 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 67 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 123
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EMVMRA+ +VYHL CF C CN GD F + DN + C +E
Sbjct: 124 SEMVMRARESVYHLSCFTCTTCNKTLTTGDHFGMKDNLVYCRAHFES 170
>gi|395531047|ref|XP_003767594.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 3 [Sarcophilus
harrisii]
Length = 380
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 58/106 (54%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 67 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 123
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA+ +VYHL CF C CN GD F + DN + C +E
Sbjct: 124 SEMVMRARESVYHLSCFTCTTCNKTLTTGDHFGMKDNLVYCRAHFE 169
>gi|326924942|ref|XP_003208681.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 2 [Meleagris
gallopavo]
Length = 271
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 58/107 (54%), Gaps = 4/107 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 27 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 83
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EMVMRA+ +VYHL CF C CN GD F + DN + C +E
Sbjct: 84 SEMVMRARESVYHLSCFTCTTCNKTLTTGDHFGMKDNLVYCRAHFES 130
>gi|126306417|ref|XP_001367814.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 3 [Monodelphis
domestica]
Length = 380
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 58/106 (54%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 67 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 123
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA+ +VYHL CF C CN GD F + DN + C +E
Sbjct: 124 SEMVMRARESVYHLSCFTCTTCNKTLTTGDHFGMKDNLVYCRAHFE 169
>gi|126306415|ref|XP_001367775.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Monodelphis
domestica]
gi|395531045|ref|XP_003767593.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Sarcophilus
harrisii]
Length = 321
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 58/106 (54%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 77 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 133
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA+ +VYHL CF C CN GD F + DN + C +E
Sbjct: 134 SEMVMRARESVYHLSCFTCTTCNKTLTTGDHFGMKDNLVYCRAHFE 179
>gi|1708557|sp|P53408.1|ISL2A_ONCTS RecName: Full=Insulin gene enhancer protein ISL-2A; Short=Islet-2A
Length = 358
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/104 (44%), Positives = 59/104 (56%), Gaps = 3/104 (2%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A DL WH CLKC C L E T + + CKRDY+RLFG CA C +
Sbjct: 43 APDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDYVRLFGIK--CANCNIGFCSS 99
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 104
++VMRA++NVYH+ECF C C+ GD F L D ++LC D+
Sbjct: 100 DLVMRARDNVYHMECFRCSVCSRHLLPGDEFSLRDEELLCRADH 143
>gi|449268141|gb|EMC79011.1| LIM/homeobox protein Lhx9 [Columba livia]
Length = 378
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 58/107 (54%), Gaps = 4/107 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 67 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 123
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EMVMRA+ +VYHL CF C CN GD F + DN + C +E
Sbjct: 124 SEMVMRARESVYHLSCFTCTTCNKTLTTGDHFGMKDNLVYCRAHFES 170
>gi|18858909|ref|NP_571039.1| insulin gene enhancer protein isl-2b [Danio rerio]
gi|1708564|sp|P53407.1|ISL2B_DANRE RecName: Full=Insulin gene enhancer protein isl-2b; Short=Islet-2B;
AltName: Full=Insulin gene enhancer protein isl-3;
Short=Islet-3
gi|1037168|dbj|BAA07485.1| zfIsl-3 [Danio rerio]
gi|55962547|emb|CAI11499.1| islet 3 [Danio rerio]
gi|63100507|gb|AAH95011.1| Islet2b [Danio rerio]
Length = 358
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 62/104 (59%), Gaps = 3/104 (2%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+ DL WH CLKC C+ L E T + + CKRDY+RLFG CA CT +
Sbjct: 43 SPDLEWHAACLKCVECNQYLDET-CTCFVRDGKTYCKRDYVRLFGIK--CAKCTLGFSSS 99
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 104
++VMRA+++VYH+ECF C C+ + GD F + D ++LC D+
Sbjct: 100 DLVMRARDSVYHIECFRCSVCSRQLLPGDEFSVRDEELLCRADH 143
>gi|224493175|sp|Q90881.2|LHX9_CHICK RecName: Full=LIM/homeobox protein Lhx9; Short=LIM homeobox protein
9
Length = 397
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 58/107 (54%), Gaps = 4/107 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 86 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 142
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EMVMRA+ +VYHL CF C CN GD F + DN + C +E
Sbjct: 143 SEMVMRARESVYHLSCFTCTTCNKTLTTGDHFGMKDNLVYCRAHFES 189
>gi|45382197|ref|NP_990757.1| LIM/homeobox protein Lhx9 [Gallus gallus]
gi|556038|gb|AAA50258.1| homeobox protein [Gallus gallus]
Length = 378
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 58/107 (54%), Gaps = 4/107 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 67 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 123
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EMVMRA+ +VYHL CF C CN GD F + DN + C +E
Sbjct: 124 SEMVMRARESVYHLSCFTCTTCNKTLTTGDHFGMKDNLVYCRAHFES 170
>gi|301780216|ref|XP_002925525.1| PREDICTED: insulin gene enhancer protein ISL-2-like [Ailuropoda
melanoleuca]
Length = 540
Score = 82.0 bits (201), Expect = 7e-14, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 52/91 (57%), Gaps = 3/91 (3%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
DL WH CLKC C L E T + + CKRDY+RLFG CA C + ++
Sbjct: 45 DLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDYVRLFGIK--CAKCQVGFSSSDL 101
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYL 93
VMRA+++VYH+ECF C C+ + GD F L
Sbjct: 102 VMRARDSVYHIECFRCSVCSRQLLPGDEFSL 132
>gi|405975209|gb|EKC39790.1| LIM/homeobox protein Lhx5 [Crassostrea gigas]
Length = 471
Score = 82.0 bits (201), Expect = 7e-14, Method: Composition-based stats.
Identities = 37/104 (35%), Positives = 57/104 (54%), Gaps = 6/104 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH C++C C L + + + + C+ D+ R FGT CA CT+ I +
Sbjct: 20 LDRAWHAKCVQCSDCKTTLTD---KCFSRDGKLFCRNDFFRRFGTK--CAGCTQGISPND 74
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 104
+V RA+N V+HL+CF C C + G+ Y+ D N+ +C+ DY
Sbjct: 75 LVRRARNKVFHLKCFTCIICRKQLSTGEELYVMDENRFICKEDY 118
>gi|328705917|ref|XP_001945631.2| PREDICTED: LIM/homeobox protein Lhx5-like [Acyrthosiphon pisum]
Length = 555
Score = 82.0 bits (201), Expect = 8e-14, Method: Composition-based stats.
Identities = 39/104 (37%), Positives = 56/104 (53%), Gaps = 6/104 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH +C+KC DC G + Y + ILCK D+ R +G C C + I +
Sbjct: 133 LDRAWHAECVKCA--DCH-GTLSDKCYSRDGKILCKPDFYRRYGKK--CNGCAQGISPTD 187
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFY-LCDNKILCEYDY 104
+V +A++ V+HL CF C C + G+ Y L DNK +C+ DY
Sbjct: 188 LVRKARDKVFHLNCFTCMICRKQLSTGEELYVLEDNKFICKDDY 231
Score = 37.0 bits (84), Expect = 2.5, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 50 CAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEER 107
CA C K I + ++ + +H EC C C+ + D+ Y D KILC+ D+ R
Sbjct: 117 CAGCDKPIMD-KFLLNVLDRAWHAECVKCADCHG--TLSDKCYSRDGKILCKPDFYRR 171
>gi|404312735|pdb|2LXD|A Chain A, Backbone 1h, 13c, And 15n Chemical Shift Assignments For
Lmo2(Lim2)- Ldb1(Lid)
Length = 125
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 45/67 (67%)
Query: 40 YLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKIL 99
YLRLFG G CA+C K I A+EM MR K+ VYHLECF C C F VGDR+ L ++ I+
Sbjct: 3 YLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIV 62
Query: 100 CEYDYEE 106
CE D E
Sbjct: 63 CEQDIYE 69
>gi|194378152|dbj|BAG57826.1| unnamed protein product [Homo sapiens]
Length = 80
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 37/42 (88%), Positives = 39/42 (92%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 42
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLR
Sbjct: 39 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLR 80
>gi|348543221|ref|XP_003459082.1| PREDICTED: LIM/homeobox protein Lhx9-like [Oreochromis niloticus]
Length = 509
Score = 81.6 bits (200), Expect = 9e-14, Method: Composition-based stats.
Identities = 36/100 (36%), Positives = 58/100 (58%), Gaps = 2/100 (2%)
Query: 6 WHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMR 65
WH CL+C C C L + +LY + I C++DY R+FG G CA C + IPA ++VMR
Sbjct: 192 WHNPCLRCSQCQCEL-QTHPSLYWRDGNIYCQQDYCRMFGG-GQCARCFQPIPASDLVMR 249
Query: 66 AKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
+ +H CF+CQ+C+ + G+ + + + C+ Y+
Sbjct: 250 SGELTFHPHCFSCQECDVKLMPGNLYCMQGANLYCQSHYQ 289
>gi|18858907|ref|NP_571045.1| insulin gene enhancer protein isl-2a [Danio rerio]
gi|1708561|sp|P53406.1|ISL2A_DANRE RecName: Full=Insulin gene enhancer protein isl-2a; Short=Islet-2A;
AltName: Full=Insulin gene enhancer protein isl-2;
Short=Islet-2
gi|871001|emb|CAA61283.1| Islet-2 protein [Danio rerio]
gi|1037166|dbj|BAA07484.1| zfIsl-2 [Danio rerio]
gi|190336908|gb|AAI62631.1| Islet2a [Danio rerio]
gi|190339440|gb|AAI62833.1| Islet2a [Danio rerio]
Length = 359
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 59/104 (56%), Gaps = 3/104 (2%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+ DL WH CLKC C L E T + + CKRDY+RLFG CA C +
Sbjct: 43 SPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDYVRLFGIK--CAKCNIGFCSS 99
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 104
++VMRA++NVYH+ECF C C+ GD F L D ++LC D+
Sbjct: 100 DLVMRARDNVYHMECFRCSVCSRHLLPGDEFSLRDEELLCRADH 143
>gi|301618805|ref|XP_002938795.1| PREDICTED: LIM/homeobox protein Lhx2-like [Xenopus (Silurana)
tropicalis]
Length = 419
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 58/106 (54%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 89 AVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF-SVQRCARCHLGISA 145
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA++ VYHL CF C CN GD F + DN + C +E
Sbjct: 146 SEMVMRARDLVYHLNCFTCNTCNKMLTTGDHFGMKDNLVYCRLHFE 191
>gi|443694945|gb|ELT95963.1| hypothetical protein CAPTEDRAFT_167213 [Capitella teleta]
Length = 352
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 59/100 (59%), Gaps = 5/100 (5%)
Query: 6 WHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMR 65
WHE CL+C C L + + K +LCK DY RL+ C+AC + +P+ E+VMR
Sbjct: 35 WHERCLQCDFCRAPLTR---SCFVKNGRLLCKLDYDRLYA--ARCSACVQTVPSNELVMR 89
Query: 66 AKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
A +V+HL+CF C C H+ GD+F + D ++ C D+E
Sbjct: 90 AVGHVFHLQCFVCVACGHQLQRGDQFVVKDGQLFCRADFE 129
>gi|291290877|ref|NP_001167469.1| LIM homeobox 2 [Xenopus laevis]
gi|37720481|gb|AAN41461.1| LIM homeobox protein 2 [Xenopus laevis]
Length = 419
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 58/106 (54%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 89 AVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF-SVQRCARCHLGISA 145
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA++ VYHL CF C CN GD F + DN + C +E
Sbjct: 146 SEMVMRARDLVYHLNCFTCNTCNKMLTTGDHFGMKDNLVYCRLHFE 191
>gi|224073927|ref|XP_002191376.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 1 [Taeniopygia
guttata]
Length = 436
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 58/106 (54%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 105 AVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF-SVQRCARCHLGISA 161
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA++ VYHL CF C CN GD F + DN + C +E
Sbjct: 162 SEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDNLVYCRLHFE 207
>gi|449478340|ref|XP_004175607.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 2 [Taeniopygia
guttata]
Length = 399
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 58/106 (54%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 68 AVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF-SVQRCARCHLGISA 124
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA++ VYHL CF C CN GD F + DN + C +E
Sbjct: 125 SEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDNLVYCRLHFE 170
>gi|345132131|gb|AEN75258.1| Lim1 [Neanthes arenaceodentata]
Length = 498
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 36/104 (34%), Positives = 57/104 (54%), Gaps = 6/104 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH C++C +CR + + + + C+ D+ R FGT C C++ I +
Sbjct: 42 LDRAWHAKCVQC--VECR-SNLTDKCFSRDGKLYCREDFFRRFGTK--CGGCSQGISPND 96
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 104
+V RA+N V+HL+CF C C + G+ Y+ D NK +C+ DY
Sbjct: 97 LVRRARNKVFHLKCFTCMVCRKQLSTGEELYVLDENKFICKEDY 140
>gi|395838925|ref|XP_003792355.1| PREDICTED: LIM/homeobox protein Lhx9 [Otolemur garnettii]
Length = 397
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 86 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 142
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA+++VYHL CF C CN GD F + D+ + C +E
Sbjct: 143 SEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFE 188
>gi|45382441|ref|NP_990220.1| LIM/homeobox protein Lhx2 [Gallus gallus]
gi|2340819|dbj|BAA21846.1| LIM homeodomain [Gallus gallus]
Length = 400
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 58/106 (54%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 69 AVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF-SVQRCARCHLGISA 125
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA++ VYHL CF C CN GD F + DN + C +E
Sbjct: 126 SEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDNLVYCRLHFE 171
>gi|301615074|ref|XP_002937009.1| PREDICTED: LIM/homeobox protein Lhx4-like [Xenopus (Silurana)
tropicalis]
Length = 385
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 63/105 (60%), Gaps = 6/105 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH CLKC C+C++ Y+ N + CK D+ + FGT C AC + IP +
Sbjct: 55 LDRHWHSACLKC--CECQVPLAERCFYRAGN-VYCKEDFFKCFGTK--CTACQQGIPPTQ 109
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
+V +A++ VYHL CF+C C+ + GD FYL D +++C+ DYE
Sbjct: 110 VVRKAQDFVYHLHCFSCIICSRQLATGDEFYLMEDGRLVCKEDYE 154
>gi|224471838|sp|A0JNI8.2|LHX9_BOVIN RecName: Full=LIM/homeobox protein Lhx9; Short=LIM homeobox protein
9
gi|110665672|gb|ABG81482.1| LIM homeobox 9 [Bos taurus]
Length = 397
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 86 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 142
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA+++VYHL CF C CN GD F + D+ + C +E
Sbjct: 143 SEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFE 188
>gi|291402694|ref|XP_002717723.1| PREDICTED: LIM homeobox protein 9-like isoform 1 [Oryctolagus
cuniculus]
Length = 397
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 86 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 142
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA+++VYHL CF C CN GD F + D+ + C +E
Sbjct: 143 SEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFE 188
>gi|224493113|sp|A2I8Z7.1|LHX9_ASTFA RecName: Full=LIM/homeobox protein Lhx9; Short=LIM homeobox protein
9
gi|121531644|gb|ABM55505.1| LIM/homeobox protein 9 [Astyanax mexicanus]
Length = 377
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 59/107 (55%), Gaps = 4/107 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 67 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 123
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EMVMRA+++VYHL CF C CN GD F + +N + C +E
Sbjct: 124 SEMVMRARDSVYHLSCFTCTSCNKTLTTGDHFGMRENLVYCRAHFES 170
>gi|70909340|ref|NP_001020736.1| LIM/homeobox protein Lhx9 isoform a [Mus musculus]
gi|49119043|gb|AAH72623.1| LIM homeobox protein 9 [Mus musculus]
Length = 330
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 86 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 142
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA+++VYHL CF C CN GD F + D+ + C +E
Sbjct: 143 SEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFE 188
>gi|33569216|ref|NP_064589.2| LIM/homeobox protein Lhx9 isoform 1 [Homo sapiens]
gi|73960328|ref|XP_848787.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Canis lupus
familiaris]
gi|332230752|ref|XP_003264559.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 1 [Nomascus
leucogenys]
gi|224471883|sp|Q9NQ69.3|LHX9_HUMAN RecName: Full=LIM/homeobox protein Lhx9; Short=LIM homeobox protein
9
gi|33416232|gb|AAP32471.2| LIM-homeobox 9 protein [Homo sapiens]
gi|119611696|gb|EAW91290.1| LIM homeobox 9, isoform CRA_d [Homo sapiens]
gi|124297089|gb|AAI31623.1| LIM homeobox 9 [Homo sapiens]
gi|355558916|gb|EHH15696.1| hypothetical protein EGK_01820 [Macaca mulatta]
gi|355746065|gb|EHH50690.1| hypothetical protein EGM_01558 [Macaca fascicularis]
Length = 397
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 86 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 142
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA+++VYHL CF C CN GD F + D+ + C +E
Sbjct: 143 SEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFE 188
>gi|440904877|gb|ELR55334.1| LIM/homeobox protein Lhx9 [Bos grunniens mutus]
Length = 397
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 86 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 142
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA+++VYHL CF C CN GD F + D+ + C +E
Sbjct: 143 SEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFE 188
>gi|351708127|gb|EHB11046.1| LIM/homeobox protein Lhx9 [Heterocephalus glaber]
Length = 397
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 86 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 142
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA+++VYHL CF C CN GD F + D+ + C +E
Sbjct: 143 SEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFE 188
>gi|348578260|ref|XP_003474901.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 1 [Cavia
porcellus]
Length = 397
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 86 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 142
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA+++VYHL CF C CN GD F + D+ + C +E
Sbjct: 143 SEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFE 188
>gi|281354175|gb|EFB29759.1| hypothetical protein PANDA_007956 [Ailuropoda melanoleuca]
Length = 382
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 86 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 142
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA+++VYHL CF C CN GD F + D+ + C +E
Sbjct: 143 SEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFE 188
>gi|403307412|ref|XP_003944189.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 1 [Saimiri boliviensis
boliviensis]
Length = 399
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 86 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 142
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA+++VYHL CF C CN GD F + D+ + C +E
Sbjct: 143 SEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFE 188
>gi|114571656|ref|XP_001139158.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Pan troglodytes]
Length = 399
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 86 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 142
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA+++VYHL CF C CN GD F + D+ + C +E
Sbjct: 143 SEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFE 188
>gi|410986204|ref|XP_003999402.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Felis catus]
Length = 380
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 67 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 123
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA+++VYHL CF C CN GD F + D+ + C +E
Sbjct: 124 SEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFE 169
>gi|344254817|gb|EGW10921.1| LIM/homeobox protein Lhx9 [Cricetulus griseus]
Length = 311
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 67 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 123
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA+++VYHL CF C CN GD F + D+ + C +E
Sbjct: 124 SEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFE 169
>gi|6180222|emb|CAB59909.1| putative LIM homeodomain protein [Mus musculus]
Length = 299
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 55 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 111
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA+++VYHL CF C CN GD F + D+ + C +E
Sbjct: 112 SEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFE 157
>gi|397505116|ref|XP_003823119.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 1 [Pan paniscus]
gi|441624364|ref|XP_004088986.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Nomascus
leucogenys]
Length = 399
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 86 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 142
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA+++VYHL CF C CN GD F + D+ + C +E
Sbjct: 143 SEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFE 188
>gi|66792874|ref|NP_001019715.1| LIM/homeobox protein Lhx9 [Bos taurus]
gi|61555226|gb|AAX46681.1| LIM homeobox 9 [Bos taurus]
gi|296478851|tpg|DAA20966.1| TPA: LIM/homeobox protein Lhx9 [Bos taurus]
Length = 378
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 67 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 123
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA+++VYHL CF C CN GD F + D+ + C +E
Sbjct: 124 SEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFE 169
>gi|348578264|ref|XP_003474903.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 3 [Cavia
porcellus]
Length = 321
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 77 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 133
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA+++VYHL CF C CN GD F + D+ + C +E
Sbjct: 134 SEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFE 179
>gi|119611698|gb|EAW91292.1| LIM homeobox 9, isoform CRA_f [Homo sapiens]
Length = 321
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 77 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 133
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA+++VYHL CF C CN GD F + D+ + C +E
Sbjct: 134 SEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFE 179
>gi|291402698|ref|XP_002717725.1| PREDICTED: LIM homeobox protein 9-like isoform 3 [Oryctolagus
cuniculus]
Length = 321
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 77 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 133
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA+++VYHL CF C CN GD F + D+ + C +E
Sbjct: 134 SEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFE 179
>gi|119611694|gb|EAW91288.1| LIM homeobox 9, isoform CRA_b [Homo sapiens]
Length = 378
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 67 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 123
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA+++VYHL CF C CN GD F + D+ + C +E
Sbjct: 124 SEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFE 169
>gi|444717046|gb|ELW57882.1| LIM/homeobox protein Lhx9 [Tupaia chinensis]
Length = 378
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 67 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 123
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA+++VYHL CF C CN GD F + D+ + C +E
Sbjct: 124 SEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFE 169
>gi|410986202|ref|XP_003999401.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 1 [Felis catus]
Length = 388
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 77 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 133
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA+++VYHL CF C CN GD F + D+ + C +E
Sbjct: 134 SEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFE 179
>gi|345110700|pdb|2L6Y|B Chain B, Haddock Model Of Gata1nf:lmo2lim2-Ldb1lid
gi|345110703|pdb|2L6Z|C Chain C, Haddock Model Of Gata1nf:lmo2lim2-Ldb1lid With Fog
Length = 96
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 45/67 (67%)
Query: 40 YLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKIL 99
YLRLFG G CA+C K I A+EM MR K+ VYHLECF C C F VGDR+ L ++ I+
Sbjct: 1 YLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIV 60
Query: 100 CEYDYEE 106
CE D E
Sbjct: 61 CEQDIYE 67
>gi|345803062|ref|XP_857156.2| PREDICTED: LIM/homeobox protein Lhx9 isoform 4 [Canis lupus
familiaris]
Length = 380
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 67 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 123
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA+++VYHL CF C CN GD F + D+ + C +E
Sbjct: 124 SEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFE 169
>gi|354485100|ref|XP_003504722.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 1 [Cricetulus
griseus]
gi|118763751|gb|AAI28723.1| Lhx9 protein [Rattus norvegicus]
Length = 321
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 77 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 133
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA+++VYHL CF C CN GD F + D+ + C +E
Sbjct: 134 SEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFE 179
>gi|110611159|ref|NP_001036042.1| LIM/homeobox protein Lhx9 isoform c [Mus musculus]
gi|224471884|sp|Q9WUH2.3|LHX9_MOUSE RecName: Full=LIM/homeobox protein Lhx9; Short=LIM homeobox protein
9
Length = 397
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 86 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 142
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA+++VYHL CF C CN GD F + D+ + C +E
Sbjct: 143 SEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFE 188
>gi|62859451|ref|NP_001015899.1| LIM homeobox 8 [Xenopus (Silurana) tropicalis]
gi|89268071|emb|CAJ83129.1| LIM homeobox 7/8 [Xenopus (Silurana) tropicalis]
gi|110645724|gb|AAI18740.1| LIM homeobox 8 [Xenopus (Silurana) tropicalis]
Length = 374
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
DL WH CL C C LG ++ Y K I CK DY R +GT C+ C + I A +
Sbjct: 110 DLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIYCKLDYFRRYGT--RCSRCGRHIHATDW 166
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RAK NVYHL CFAC C + G+ F L + K+LC Y+
Sbjct: 167 VRRAKGNVYHLACFACYSCKRQLSTGEEFALVEEKVLCRVHYD 209
>gi|345805844|ref|XP_003435360.1| PREDICTED: LIM homeobox transcription factor 1-beta [Canis lupus
familiaris]
Length = 487
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 40/103 (38%), Positives = 57/103 (55%), Gaps = 5/103 (4%)
Query: 6 WHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMR 65
WHE+CL+C C L ++ Y + + CK+DY +LF C+ C + I E VMR
Sbjct: 161 WHEECLQCAACQQALT---TSCYFRDRKLYCKQDYQQLFAAK--CSGCMEKIAPTEFVMR 215
Query: 66 AKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQ 108
A VYHL CF C C + GD F L + ++LC+ DYE+ +
Sbjct: 216 ALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLCKGDYEKEK 258
>gi|6754542|ref|NP_034844.1| LIM/homeobox protein Lhx9 isoform b [Mus musculus]
gi|6179608|emb|CAB59907.1| putative LIM-homeodomain alpha isoform [Mus musculus]
gi|148707590|gb|EDL39537.1| LIM homeobox protein 9, isoform CRA_b [Mus musculus]
Length = 321
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 77 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 133
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA+++VYHL CF C CN GD F + D+ + C +E
Sbjct: 134 SEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFE 179
>gi|107602|pir||C39370 rhombotin homolog 3 - human (fragment)
Length = 72
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/42 (88%), Positives = 39/42 (92%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 42
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLR
Sbjct: 31 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLR 72
>gi|253828|gb|AAB22956.1| rhombotin LIM 1 domain [human, brain, Peptide Partial, 69 aa]
gi|55731657|emb|CAH92534.1| hypothetical protein [Pongo abelii]
gi|55733193|emb|CAH93280.1| hypothetical protein [Pongo abelii]
Length = 69
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/42 (88%), Positives = 39/42 (92%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 42
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYLR
Sbjct: 28 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLR 69
>gi|403307414|ref|XP_003944190.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Saimiri boliviensis
boliviensis]
Length = 388
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 77 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 133
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA+++VYHL CF C CN GD F + D+ + C +E
Sbjct: 134 SEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFE 179
>gi|117306370|gb|AAI26705.1| LHX9 protein [Bos taurus]
Length = 388
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 77 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 133
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA+++VYHL CF C CN GD F + D+ + C +E
Sbjct: 134 SEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFE 179
>gi|62241033|ref|NP_001014434.1| LIM/homeobox protein Lhx9 isoform 2 [Homo sapiens]
gi|114571650|ref|XP_525011.2| PREDICTED: LIM/homeobox protein Lhx9 isoform 6 [Pan troglodytes]
gi|297281170|ref|XP_001110674.2| PREDICTED: LIM/homeobox protein Lhx9 isoform 3 [Macaca mulatta]
gi|395729258|ref|XP_002809704.2| PREDICTED: LIM/homeobox protein Lhx9 [Pongo abelii]
gi|397505118|ref|XP_003823120.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Pan paniscus]
gi|402857736|ref|XP_003893401.1| PREDICTED: LIM/homeobox protein Lhx9 [Papio anubis]
gi|426333155|ref|XP_004028150.1| PREDICTED: LIM/homeobox protein Lhx9 [Gorilla gorilla gorilla]
gi|9367761|emb|CAB97493.1| LIM-homeobox 9 [Homo sapiens]
gi|119611697|gb|EAW91291.1| LIM homeobox 9, isoform CRA_e [Homo sapiens]
Length = 388
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 77 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 133
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA+++VYHL CF C CN GD F + D+ + C +E
Sbjct: 134 SEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFE 179
>gi|344276910|ref|XP_003410248.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 1 [Loxodonta africana]
Length = 380
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 67 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 123
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA+++VYHL CF C CN GD F + D+ + C +E
Sbjct: 124 SEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFE 169
>gi|29570244|gb|AAO85392.1| LIM-homeobox protein 9 [Sus scrofa]
Length = 369
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 86 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 142
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA+++VYHL CF C CN GD F + D+ + C +E
Sbjct: 143 SEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFE 188
>gi|301767830|ref|XP_002919335.1| PREDICTED: LIM/homeobox protein Lhx9-like [Ailuropoda melanoleuca]
Length = 447
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 77 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 133
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA+++VYHL CF C CN GD F + D+ + C +E
Sbjct: 134 SEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFE 179
>gi|296236843|ref|XP_002763501.1| PREDICTED: insulin gene enhancer protein ISL-2 [Callithrix jacchus]
Length = 359
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 61/104 (58%), Gaps = 3/104 (2%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+ DL WH CLKC C L E T + + CKRDY+RLFG CA C +
Sbjct: 43 SPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDYVRLFGIK--CAKCQVGFSSS 99
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 104
++VMRA+++VYH+ECF C C+ + GD F L ++++LC D+
Sbjct: 100 DLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRADH 143
>gi|296230329|ref|XP_002760660.1| PREDICTED: LIM/homeobox protein Lhx9 [Callithrix jacchus]
Length = 388
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 77 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 133
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA+++VYHL CF C CN GD F + D+ + C +E
Sbjct: 134 SEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFE 179
>gi|109081997|ref|XP_001105068.1| PREDICTED: insulin gene enhancer protein ISL-2 isoform 2 [Macaca
mulatta]
Length = 359
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 61/104 (58%), Gaps = 3/104 (2%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+ DL WH CLKC C L E T + + CKRDY+RLFG CA C +
Sbjct: 43 SPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDYVRLFGIK--CAKCQVGFSSS 99
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 104
++VMRA+++VYH+ECF C C+ + GD F L ++++LC D+
Sbjct: 100 DLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRADH 143
>gi|348536381|ref|XP_003455675.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 1 [Oreochromis
niloticus]
Length = 399
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 88 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 144
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA+++VYHL CF C CN GD F + D+ + C +E
Sbjct: 145 SEMVMRARDSVYHLSCFTCTTCNKTLTTGDHFGMKDSLVYCRLHFE 190
>gi|47221465|emb|CAG08127.1| unnamed protein product [Tetraodon nigroviridis]
Length = 535
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 41/103 (39%), Positives = 55/103 (53%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + + A +
Sbjct: 36 NLNWHLGCLECSVCRASLRQHNSC-YVKNKEIFCKLDYFSRFGTK--CAQCGRQVYASDW 92
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ +VYHL CFAC C + G+ F L + ++LC Y+
Sbjct: 93 VRRARGSVYHLACFACFSCKRQLSTGEEFGLVEGRVLCRSHYD 135
>gi|335296199|ref|XP_003130643.2| PREDICTED: LIM/homeobox protein Lhx9 isoform 1 [Sus scrofa]
Length = 399
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 86 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 142
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA+++VYHL CF C CN GD F + D+ + C +E
Sbjct: 143 SEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFE 188
>gi|31077136|ref|NP_852032.1| LIM/homeobox protein Lhx9 [Rattus norvegicus]
gi|81895227|sp|Q80W90.1|LHX9_RAT RecName: Full=LIM/homeobox protein Lhx9; Short=LIM homeobox protein
9
gi|30525882|gb|AAP32472.1| LIM-homeodomain type transcription factor Lhx9 [Rattus norvegicus]
Length = 388
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 77 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 133
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA+++VYHL CF C CN GD F + D+ + C +E
Sbjct: 134 SEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFE 179
>gi|395822580|ref|XP_003784594.1| PREDICTED: insulin gene enhancer protein ISL-2 [Otolemur garnettii]
Length = 359
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 61/104 (58%), Gaps = 3/104 (2%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+ DL WH CLKC C L E T + + CKRDY+RLFG CA C +
Sbjct: 43 SPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDYVRLFGIK--CAKCQVGFSSS 99
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 104
++VMRA+++VYH+ECF C C+ + GD F L ++++LC D+
Sbjct: 100 DLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRADH 143
>gi|354485102|ref|XP_003504723.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 2 [Cricetulus
griseus]
Length = 397
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 86 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 142
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA+++VYHL CF C CN GD F + D+ + C +E
Sbjct: 143 SEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFE 188
>gi|4809142|gb|AAD30110.1|AF134761_1 LIM-homeodomain type transcription factor Lhx9 [Mus musculus]
Length = 300
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 77 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 133
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA+++VYHL CF C CN GD F + D+ + C +E
Sbjct: 134 SEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFE 179
>gi|6180221|emb|CAB59908.1| putative LIM homeodomain protein [Mus musculus]
Length = 366
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 55 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 111
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA+++VYHL CF C CN GD F + D+ + C +E
Sbjct: 112 SEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFE 157
>gi|348578262|ref|XP_003474902.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 2 [Cavia
porcellus]
Length = 388
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 77 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 133
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA+++VYHL CF C CN GD F + D+ + C +E
Sbjct: 134 SEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFE 179
>gi|348536383|ref|XP_003455676.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 2 [Oreochromis
niloticus]
Length = 333
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 88 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 144
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA+++VYHL CF C CN GD F + D+ + C +E
Sbjct: 145 SEMVMRARDSVYHLSCFTCTTCNKTLTTGDHFGMKDSLVYCRLHFE 190
>gi|344276912|ref|XP_003410249.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Loxodonta africana]
Length = 388
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 77 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 133
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA+++VYHL CF C CN GD F + D+ + C +E
Sbjct: 134 SEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFE 179
>gi|335296201|ref|XP_003357709.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Sus scrofa]
Length = 388
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 77 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 133
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA+++VYHL CF C CN GD F + D+ + C +E
Sbjct: 134 SEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFE 179
>gi|291402696|ref|XP_002717724.1| PREDICTED: LIM homeobox protein 9-like isoform 2 [Oryctolagus
cuniculus]
Length = 388
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 77 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 133
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA+++VYHL CF C CN GD F + D+ + C +E
Sbjct: 134 SEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFE 179
>gi|149743835|ref|XP_001492921.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 1 [Equus caballus]
Length = 388
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 77 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 133
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA+++VYHL CF C CN GD F + D+ + C +E
Sbjct: 134 SEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFE 179
>gi|426248250|ref|XP_004017877.1| PREDICTED: LOW QUALITY PROTEIN: insulin gene enhancer protein ISL-2
[Ovis aries]
Length = 366
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 61/104 (58%), Gaps = 3/104 (2%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+ DL WH CLKC C L E T + + CKRDY+RLFG CA C +
Sbjct: 43 SPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDYVRLFGIK--CAKCQVGFSSS 99
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 104
++VMRA+++VYH+ECF C C+ + GD F L ++++LC D+
Sbjct: 100 DLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRADH 143
>gi|27923333|gb|AAO27570.1| LIM-homeodomain type transcription factor Lhx9 [Rattus norvegicus]
Length = 325
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 55 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 111
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA+++VYHL CF C CN GD F + D+ + C +E
Sbjct: 112 SEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFE 157
>gi|21956641|ref|NP_665804.1| insulin gene enhancer protein ISL-2 [Homo sapiens]
gi|114658283|ref|XP_001147206.1| PREDICTED: insulin gene enhancer protein ISL-2 isoform 1 [Pan
troglodytes]
gi|297697192|ref|XP_002825752.1| PREDICTED: insulin gene enhancer protein ISL-2 [Pongo abelii]
gi|426379888|ref|XP_004056619.1| PREDICTED: insulin gene enhancer protein ISL-2 isoform 1 [Gorilla
gorilla gorilla]
gi|20978495|sp|Q96A47.1|ISL2_HUMAN RecName: Full=Insulin gene enhancer protein ISL-2; Short=Islet-2
gi|15080438|gb|AAH11967.1| ISL LIM homeobox 2 [Homo sapiens]
gi|15082435|gb|AAH12136.1| ISL LIM homeobox 2 [Homo sapiens]
gi|119619626|gb|EAW99220.1| ISL2 transcription factor, LIM/homeodomain, (islet-2) [Homo
sapiens]
gi|167773881|gb|ABZ92375.1| ISL LIM homeobox 2 [synthetic construct]
gi|193785483|dbj|BAG50849.1| unnamed protein product [Homo sapiens]
Length = 359
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 61/104 (58%), Gaps = 3/104 (2%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+ DL WH CLKC C L E T + + CKRDY+RLFG CA C +
Sbjct: 43 SPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDYVRLFGIK--CAKCQVGFSSS 99
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 104
++VMRA+++VYH+ECF C C+ + GD F L ++++LC D+
Sbjct: 100 DLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRADH 143
>gi|403304937|ref|XP_003943035.1| PREDICTED: insulin gene enhancer protein ISL-2 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 359
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 61/104 (58%), Gaps = 3/104 (2%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+ DL WH CLKC C L E T + + CKRDY+RLFG CA C +
Sbjct: 43 SPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDYVRLFGIK--CAKCQVGFSSS 99
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 104
++VMRA+++VYH+ECF C C+ + GD F L ++++LC D+
Sbjct: 100 DLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRADH 143
>gi|296475432|tpg|DAA17547.1| TPA: ISL LIM homeobox 2 [Bos taurus]
gi|440909295|gb|ELR59218.1| Insulin enhancer protein ISL-2 [Bos grunniens mutus]
Length = 359
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 61/104 (58%), Gaps = 3/104 (2%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+ DL WH CLKC C L E T + + CKRDY+RLFG CA C +
Sbjct: 43 SPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDYVRLFGIK--CAKCQVGFSSS 99
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 104
++VMRA+++VYH+ECF C C+ + GD F L ++++LC D+
Sbjct: 100 DLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRADH 143
>gi|300795417|ref|NP_001178166.1| insulin gene enhancer protein ISL-2 [Bos taurus]
Length = 359
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 61/104 (58%), Gaps = 3/104 (2%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+ DL WH CLKC C L E T + + CKRDY+RLFG CA C +
Sbjct: 43 SPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDYVRLFGIK--CAKCQVGFSSS 99
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 104
++VMRA+++VYH+ECF C C+ + GD F L ++++LC D+
Sbjct: 100 DLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRADH 143
>gi|149691761|ref|XP_001490268.1| PREDICTED: insulin gene enhancer protein ISL-2 [Equus caballus]
Length = 359
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 61/104 (58%), Gaps = 3/104 (2%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+ DL WH CLKC C L E T + + CKRDY+RLFG CA C +
Sbjct: 43 SPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDYVRLFGIK--CAKCQVGFSSS 99
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 104
++VMRA+++VYH+ECF C C+ + GD F L ++++LC D+
Sbjct: 100 DLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRADH 143
>gi|332844416|ref|XP_003314842.1| PREDICTED: insulin gene enhancer protein ISL-2 isoform 2 [Pan
troglodytes]
gi|426379890|ref|XP_004056620.1| PREDICTED: insulin gene enhancer protein ISL-2 isoform 2 [Gorilla
gorilla gorilla]
Length = 360
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 61/104 (58%), Gaps = 3/104 (2%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+ DL WH CLKC C L E T + + CKRDY+RLFG CA C +
Sbjct: 43 SPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDYVRLFGIK--CAKCQVGFSSS 99
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 104
++VMRA+++VYH+ECF C C+ + GD F L ++++LC D+
Sbjct: 100 DLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRADH 143
>gi|301605174|ref|XP_002932200.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 1 [Xenopus
(Silurana) tropicalis]
Length = 331
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 58/106 (54%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 87 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 143
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA+ +VYHL CF C CN GD F + +N + C +E
Sbjct: 144 SEMVMRARESVYHLSCFTCTTCNKTLSTGDHFGMKENLVYCRIHFE 189
>gi|403304939|ref|XP_003943036.1| PREDICTED: insulin gene enhancer protein ISL-2 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 360
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 61/104 (58%), Gaps = 3/104 (2%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+ DL WH CLKC C L E T + + CKRDY+RLFG CA C +
Sbjct: 43 SPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDYVRLFGIK--CAKCQVGFSSS 99
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 104
++VMRA+++VYH+ECF C C+ + GD F L ++++LC D+
Sbjct: 100 DLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRADH 143
>gi|432854590|ref|XP_004067976.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 1 [Oryzias latipes]
Length = 378
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 67 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 123
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA+++VYHL CF C CN GD F + D+ + C +E
Sbjct: 124 SEMVMRARDSVYHLSCFTCTTCNKTLTTGDHFGMKDSLVYCRLHFE 169
>gi|154146254|ref|NP_081673.2| insulin gene enhancer protein ISL-2 [Mus musculus]
gi|408360153|sp|Q9CXV0.2|ISL2_MOUSE RecName: Full=Insulin gene enhancer protein ISL-2; Short=Islet-2
gi|148693907|gb|EDL25854.1| insulin related protein 2 (islet 2) [Mus musculus]
gi|183396835|gb|AAI65972.1| Insulin related protein 2 (islet 2) [synthetic construct]
Length = 359
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 61/104 (58%), Gaps = 3/104 (2%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+ DL WH CLKC C L E T + + CKRDY+RLFG CA C +
Sbjct: 43 SPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDYVRLFGIK--CAQCQVGFSSS 99
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 104
++VMRA+++VYH+ECF C C+ + GD F L ++++LC D+
Sbjct: 100 DLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRADH 143
>gi|301605176|ref|XP_002932201.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 2 [Xenopus
(Silurana) tropicalis]
Length = 398
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 58/106 (54%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 87 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 143
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA+ +VYHL CF C CN GD F + +N + C +E
Sbjct: 144 SEMVMRARESVYHLSCFTCTTCNKTLSTGDHFGMKENLVYCRIHFE 189
>gi|215276334|gb|ACJ65031.1| LHX9 [Xenopus laevis]
Length = 399
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 88 AVDKQWHLRCLKC--CECKLTLESELTCFAKDGSIYCKEDYYRRF-SVKRCARCHLGISA 144
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA+ +VYHL CF C CN GD+F + +N + C +E
Sbjct: 145 SEMVMRARESVYHLSCFTCTTCNKTLSTGDQFGMKENLVYCRIHFE 190
>gi|149041730|gb|EDL95571.1| insulin related protein 2 (islet 2) [Rattus norvegicus]
Length = 359
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 61/104 (58%), Gaps = 3/104 (2%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+ DL WH CLKC C L E T + + CKRDY+RLFG CA C +
Sbjct: 43 SPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDYVRLFGIK--CAQCQVGFSSS 99
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 104
++VMRA+++VYH+ECF C C+ + GD F L ++++LC D+
Sbjct: 100 DLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRADH 143
>gi|12851555|dbj|BAB29088.1| unnamed protein product [Mus musculus]
Length = 359
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 61/104 (58%), Gaps = 3/104 (2%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+ DL WH CLKC C L E T + + CKRDY+RLFG CA C +
Sbjct: 43 SPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDYVRLFGIK--CAQCQVGFSSS 99
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 104
++VMRA+++VYH+ECF C C+ + GD F L ++++LC D+
Sbjct: 100 DLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRADH 143
>gi|410902629|ref|XP_003964796.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like [Takifugu
rubripes]
Length = 376
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 61/108 (56%), Gaps = 6/108 (5%)
Query: 6 WHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMR 65
WHE C+KC C L + T Y + L+ CK DY +LF C++C +VI E++MR
Sbjct: 52 WHETCVKCAVC---LSALTGTCYCRDRLLYCKHDYEKLF--VRKCSSCLQVIGRSELIMR 106
Query: 66 AKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE-ERQVFCV 112
+ VYHL CF C +C R GD F L + ++LC DYE ER++
Sbjct: 107 VQGQVYHLGCFTCCECERRLQRGDEFVLKEGQLLCRMDYEKEREMLAA 154
>gi|391759011|dbj|BAM22649.1| LIM homeobox 3/4, partial [Eptatretus burgeri]
Length = 205
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 59/106 (55%), Gaps = 6/106 (5%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
AL+ WH CL+C C L E + + + CK D+ R FGT CA C + IP
Sbjct: 47 ALERSWHASCLRCRDCQSPLSE---RCFSRDGALYCKEDFFRRFGTK--CAGCRQGIPPS 101
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDN-KILCEYDYE 105
+ V +A+ V+HL CFAC C + GD FYL D+ +++C++DY
Sbjct: 102 QAVRKAQERVFHLHCFACSLCGRQLATGDLFYLLDDARLVCQHDYP 147
>gi|432854592|ref|XP_004067977.1| PREDICTED: LIM/homeobox protein Lhx9 isoform 2 [Oryzias latipes]
Length = 380
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 67 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 123
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA+++VYHL CF C CN GD F + D+ + C +E
Sbjct: 124 SEMVMRARDSVYHLSCFTCTTCNKTLTTGDHFGMKDSLVYCRLHFE 169
>gi|431920332|gb|ELK18367.1| Insulin protein enhancer protein ISL-2 [Pteropus alecto]
Length = 306
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 61/104 (58%), Gaps = 3/104 (2%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+ DL WH CLKC C L E T + + CKRDY+RLFG CA C +
Sbjct: 47 SPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDYVRLFGIK--CAKCQVGFSSS 103
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 104
++VMRA+++VYH+ECF C C+ + GD F L ++++LC D+
Sbjct: 104 DLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRADH 147
>gi|47217395|emb|CAG00755.1| unnamed protein product [Tetraodon nigroviridis]
Length = 343
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 59/107 (55%), Gaps = 4/107 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 27 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 83
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EMVMRA+++VYHL CF C CN GD F + D+ + C +E
Sbjct: 84 SEMVMRARDSVYHLSCFTCTTCNKTLTTGDHFGMKDSLVYCRLHFES 130
>gi|327277087|ref|XP_003223297.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like [Anolis
carolinensis]
Length = 381
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 59/108 (54%), Gaps = 6/108 (5%)
Query: 6 WHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMR 65
WHE C+KC C L + T Y + + CK DY +LF T C+ C K + E +MR
Sbjct: 61 WHEGCVKCAAC---LQPLSGTCYCRNRQLYCKHDYEKLFQTK--CSGCLKAVAPSEFIMR 115
Query: 66 AKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE-ERQVFCV 112
NVYH+ CF+C +C R GD F L + ++LC DYE ER++
Sbjct: 116 VLENVYHVHCFSCCECERRLQRGDEFVLKEGQLLCRSDYEKEREMLSA 163
>gi|9994171|ref|NP_065204.1| insulin gene enhancer protein ISL-2 [Rattus norvegicus]
gi|1708563|sp|P50480.1|ISL2_RAT RecName: Full=Insulin gene enhancer protein ISL-2; Short=Islet-2
gi|531218|gb|AAA62161.1| amino acid feature: homeodomain, bp 647 .. 826; amino acid feature:
LIM1, bp 155 .. 307; amino acid feature: LIM2, bp 341 ..
493 [Rattus norvegicus]
Length = 360
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 60/102 (58%), Gaps = 3/102 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
DL WH CLKC C L E T + + CKRDY+RLFG CA C + ++
Sbjct: 45 DLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDYVRLFGIK--CAQCQVGFSSSDL 101
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 104
VMRA+++VYH+ECF C C+ + GD F L ++++LC D+
Sbjct: 102 VMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRADH 143
>gi|47215186|emb|CAG01452.1| unnamed protein product [Tetraodon nigroviridis]
Length = 272
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
DL WH CL C C L ++ Y K + CK DY R +GT +CA C + I + +
Sbjct: 29 DLCWHVRCLSCSVCHTSLSS-HTSCYIKEKEVFCKLDYFRRYGT--WCACCGRNIHSTDW 85
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RAK NVYHL CFAC C + G+ F L + K+LC Y+
Sbjct: 86 VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYD 128
>gi|405977546|gb|EKC41989.1| LIM/homeobox protein Lhx3 [Crassostrea gigas]
Length = 432
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 81/192 (42%), Gaps = 43/192 (22%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRL------------------ 43
LD WH CL+C C RL + + K + CK D+ R
Sbjct: 63 LDRSWHSRCLQCHDCHARLSD---KCFSKGEKVFCKDDFFRWSYVYLSMQPDLIGPLSDH 119
Query: 44 -----------------FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFC 86
+GT CA C K IP E+V RA++NVYHLECFAC C+ +
Sbjct: 120 GVTRPPKTVRERVGALRYGTK--CAGCEKGIPPTEVVRRAQDNVYHLECFACLMCSRQLN 177
Query: 87 VGDRFYLC-DNKILCEYDYEERQVFCVGDRFYLCDNKILCEYDYEERQVFANIAYN--PS 143
GD FYL D K++C+ DYE + + + NK ++ AYN P
Sbjct: 178 TGDEFYLMEDRKLVCKADYESAKARGINEYDIDAANKRPRTTITAKQLEALKRAYNESPK 237
Query: 144 SLAHLRRQVTLQ 155
H+R Q++ +
Sbjct: 238 PARHVREQLSAE 249
>gi|148707589|gb|EDL39536.1| LIM homeobox protein 9, isoform CRA_a [Mus musculus]
Length = 342
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 77 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 133
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA+++VYHL CF C CN GD F + D+ + C +E
Sbjct: 134 SEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFE 179
>gi|225543484|ref|NP_001139388.1| apterous [Tribolium castaneum]
gi|224459214|gb|ACN43342.1| apterous b [Tribolium castaneum]
Length = 361
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 58/106 (54%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L + T + + I CK DY R+F T C C I A
Sbjct: 45 AVDRQWHASCLKC--CECKLPLDTELTCFARDGNIYCKEDYYRMFAVT-RCGRCQAGISA 101
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
E+VMRA+++VYHL CF+C C GD F + D I C YE
Sbjct: 102 NELVMRARDSVYHLHCFSCTSCGMPLSKGDHFGMRDGLIYCRPHYE 147
>gi|395536948|ref|XP_003770470.1| PREDICTED: LIM/homeobox protein Lhx8-like [Sarcophilus harrisii]
Length = 362
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
DL WH CL C C LG ++ Y K I CK DY R +GT C+ C + I + +
Sbjct: 98 DLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYGT--RCSRCGRHIHSTDW 154
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RAK NVYHL CFAC C + G+ F L + K+LC Y+
Sbjct: 155 VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYD 197
>gi|332018435|gb|EGI59029.1| LIM/homeobox protein Lhx3 [Acromyrmex echinatior]
Length = 467
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 40/106 (37%), Positives = 59/106 (55%), Gaps = 6/106 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
L+ WH CL C C RL + + + + CK D+ + FGT CA C + + +
Sbjct: 103 LERCWHARCLTCRDCGARLTD---KCFARNGHVFCKDDFFKRFGTK--CAGCGQGLAPSQ 157
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYEE 106
+V RA+ VYHL CF+C C+ + GD FYL D K++C+ DYE+
Sbjct: 158 VVRRAQEFVYHLTCFSCALCSRQLDTGDEFYLMEDRKLVCKPDYEQ 203
>gi|432868110|ref|XP_004071416.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like [Oryzias
latipes]
Length = 398
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 61/108 (56%), Gaps = 6/108 (5%)
Query: 6 WHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMR 65
WHE C+KC C L + T Y + L+ CK DY +LF C+AC +VI E++MR
Sbjct: 75 WHETCVKCAVC---LSTLTGTCYCRDRLLYCKLDYEKLF--VRKCSACLQVIGRSELIMR 129
Query: 66 AKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE-ERQVFCV 112
VYHL CF+C +C R GD F L + ++LC DYE ER++
Sbjct: 130 VLGQVYHLGCFSCCECERRLQRGDEFVLKEGQLLCRMDYEKEREMLAA 177
>gi|328708425|ref|XP_001944208.2| PREDICTED: LIM/homeobox protein Lhx3-like [Acyrthosiphon pisum]
Length = 375
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 80/159 (50%), Gaps = 16/159 (10%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
L+ WH CLKC C L + + + ++ CK D+ + +GT CA C IP +
Sbjct: 61 LERTWHARCLKCNECGATLAD---KCFARNGMLFCKDDFFKRYGTK--CAGCDLGIPPTQ 115
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE---ERQVFCV-GDRF 116
+V RA++ VYHL+CFAC C GD FYL D K++C+ DYE ++ C+ GD+
Sbjct: 116 IVRRAQDLVYHLQCFACVMCGRTLNTGDEFYLMEDRKLVCKPDYEAAKTKEGGCLDGDQP 175
Query: 117 YLCDNKILCEYDYEERQVFANIAYN--PSSLAHLRRQVT 153
+ E + +AYN P H+R Q++
Sbjct: 176 NKRPRTTITAKQLETLK----MAYNNSPKPARHVREQLS 210
>gi|328925116|dbj|BAK19073.1| apterous A splicing isoform type A [Bombyx mori]
Length = 376
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 71/145 (48%), Gaps = 6/145 (4%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
AL+ WH CL+C C+C++ + Y + + I CK DY+RL+G CA C VI A
Sbjct: 79 ALERRWHTPCLRC--CECKMPLDSEQRCYARDSNIFCKNDYIRLYGPK-RCARCNTVISA 135
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFCVGDRFYLC 119
E+VMRA++ V+H+ CF+C CN GD + + D + C YE + G +
Sbjct: 136 SELVMRARDLVFHVHCFSCALCNTPLNKGDTYGIRDAAVYCRLHYETMPEY--GPHMAVP 193
Query: 120 DNKILCEYDYEERQVFANIAYNPSS 144
+C Y A+ PS
Sbjct: 194 GPPQMCPGTYAGPPPGAHYPPYPSP 218
>gi|291410745|ref|XP_002721643.1| PREDICTED: ISL LIM homeobox 2 [Oryctolagus cuniculus]
Length = 359
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 61/104 (58%), Gaps = 3/104 (2%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+ DL WH CLKC C L E T + + CKRDY+RLFG CA C +
Sbjct: 43 SPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDYVRLFGIK--CAKCQVGFGSS 99
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 104
++VMRA+++VYH+ECF C C+ + GD F L ++++LC D+
Sbjct: 100 DLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRADH 143
>gi|242009361|ref|XP_002425456.1| LIM/homeobox protein Lhx9, putative [Pediculus humanus corporis]
gi|212509292|gb|EEB12718.1| LIM/homeobox protein Lhx9, putative [Pediculus humanus corporis]
Length = 433
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 60/114 (52%), Gaps = 3/114 (2%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A DL WH CLKC C L E T + + CKRDY+RLFGT C C +
Sbjct: 27 APDLEWHAACLKCAECHQFLDE-NCTCFVRDGKTYCKRDYVRLFGTK--CDKCGQSFSKN 83
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFCVGD 114
+ VMRAK +YH++CF C C + GD F L ++ + C+ D+E C G+
Sbjct: 84 DFVMRAKTKIYHVDCFRCTACERQLVPGDEFALREDGLFCKEDHEVLDKSCTGE 137
>gi|405961382|gb|EKC27193.1| LIM/homeobox protein Lhx9 [Crassostrea gigas]
Length = 415
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 65/117 (55%), Gaps = 7/117 (5%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH +CLKC C+C++G + T + + I CK DY R + C C + I A
Sbjct: 77 AVDKQWHVNCLKC--CECKIGLDSELTCFARDGNIYCKEDYYRRYAVK-RCTRCHQGITA 133
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFCVGDRF 116
E+VMRAK+ V+H+ CF C CN GD+F + D+ I C DYE + GD F
Sbjct: 134 NELVMRAKDLVFHINCFTCASCNKTLTTGDQFGMQDDLIYCRTDYE---IIFQGDYF 187
>gi|299115102|dbj|BAJ09782.1| apterous 1 [Daphnia magna]
Length = 468
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 2/108 (1%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A++ WH +CL+CG C R + + + + + I C+ DY RLFG C C + +
Sbjct: 22 AVERAWHSECLRCGECR-RPLDTALSCFSRQSRIYCRDDYYRLFGVR-RCNRCCLPLGSN 79
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQ 108
E+VMRA++ V+HL CF C CN GD F + D + C YE Q
Sbjct: 80 ELVMRARDAVFHLACFTCAACNQPLTKGDIFGMRDGIVYCRLHYEMLQ 127
>gi|195114382|ref|XP_002001746.1| GI17017 [Drosophila mojavensis]
gi|193912321|gb|EDW11188.1| GI17017 [Drosophila mojavensis]
Length = 533
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 44/106 (41%), Positives = 55/106 (51%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A DL WH CLKC C L E T + + CKRDY+RLFGT C C
Sbjct: 78 APDLEWHAACLKCQECRQFLDE-SCTCFVRDGKTYCKRDYVRLFGTK--CDKCGNSFSKN 134
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKIL-CEYDYE 105
+ VMRAK ++H+ECF C C + GD F L D L C+ D++
Sbjct: 135 DFVMRAKTKIFHIECFRCSACARQLLPGDEFALRDAGALYCKEDHD 180
>gi|328925130|dbj|BAK19080.1| apterous A splicing isoform type C [Bombyx mori]
Length = 385
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 71/145 (48%), Gaps = 6/145 (4%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
AL+ WH CL+C C+C++ + Y + + I CK DY+RL+G CA C VI A
Sbjct: 79 ALERRWHTPCLRC--CECKMPLDSEQRCYARDSNIFCKNDYIRLYGPK-RCARCNTVISA 135
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFCVGDRFYLC 119
E+VMRA++ V+H+ CF+C CN GD + + D + C YE + G +
Sbjct: 136 SELVMRARDLVFHVHCFSCALCNTPLNKGDTYGIRDAAVYCRLHYETMPEY--GPHMAVP 193
Query: 120 DNKILCEYDYEERQVFANIAYNPSS 144
+C Y A+ PS
Sbjct: 194 GPPQMCPGTYAGPPPGAHYPPYPSP 218
>gi|326925561|ref|XP_003208981.1| PREDICTED: LIM/homeobox protein Lhx8-like [Meleagris gallopavo]
Length = 290
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
DL WH CL C C LG ++ Y K I CK DY R +GT C+ C + I + +
Sbjct: 26 DLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYGTR--CSRCGRHIHSTDW 82
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RAK NVYHL CFAC C + G+ F L + K+LC Y+
Sbjct: 83 VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYD 125
>gi|410912158|ref|XP_003969557.1| PREDICTED: insulin gene enhancer protein ISL-3-like [Takifugu
rubripes]
Length = 359
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 60/105 (57%), Gaps = 3/105 (2%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+ DL WH CLKC C L E T + + CKRDY+RLFG CA C +
Sbjct: 43 SPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDYVRLFGIK--CAKCNLGFSSS 99
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
++VMRA+++VYH+ECF C C+ + GD F L + ++LC D+
Sbjct: 100 DLVMRARDHVYHIECFRCSVCSRQLLPGDEFSLREEELLCRADHS 144
>gi|354505197|ref|XP_003514658.1| PREDICTED: LIM domain transcription factor LMO4.2-like, partial
[Cricetulus griseus]
Length = 101
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 48/73 (65%), Gaps = 4/73 (5%)
Query: 31 ANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDR 90
+ILC RLFG +G C+AC + IPA E+VMRA+ NVYHL+CF C C +R GDR
Sbjct: 8 PTIILC----FRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDR 63
Query: 91 FYLCDNKILCEYD 103
F+ + + CE+D
Sbjct: 64 FHYINGSLFCEHD 76
>gi|405971990|gb|EKC36789.1| LIM homeobox transcription factor 1-beta [Crassostrea gigas]
Length = 319
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 58/104 (55%), Gaps = 5/104 (4%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
D WHE+CL+C C RL G T Y K + CK DY +LF G C+ C I E+
Sbjct: 32 DNVWHENCLQCAIC--RLSLSG-TCYSKNGHLYCKSDYDKLF--RGRCSGCGFSINPHEL 86
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
V R +N YHL CF C +C H G+ FY+ D +I C YD+++
Sbjct: 87 VRRVYSNTYHLPCFRCVECGHVLQDGNEFYIRDGQIFCRYDHDK 130
>gi|195433046|ref|XP_002064526.1| GK23894 [Drosophila willistoni]
gi|194160611|gb|EDW75512.1| GK23894 [Drosophila willistoni]
Length = 539
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 44/106 (41%), Positives = 55/106 (51%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A DL WH CLKC C L E T + + CKRDY+RLFGT C C
Sbjct: 68 APDLEWHAACLKCQECRQFLDE-SCTCFVRDGKTYCKRDYVRLFGTK--CDKCGNSFSKN 124
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKIL-CEYDYE 105
+ VMRAK ++H+ECF C C + GD F L D L C+ D++
Sbjct: 125 DFVMRAKTKIFHIECFRCSACARQLLPGDEFALRDAGALYCKEDHD 170
>gi|444723048|gb|ELW63713.1| LIM/homeobox protein Lhx5 [Tupaia chinensis]
Length = 610
Score = 80.1 bits (196), Expect = 2e-13, Method: Composition-based stats.
Identities = 37/104 (35%), Positives = 58/104 (55%), Gaps = 6/104 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH C++C C+C+ + + + + CK D+ R FGT CA C + I +
Sbjct: 21 LDRAWHIKCVQC--CECKT-NLSEKCFSREGKLYCKNDFFRRFGTK--CAGCAQGISPSD 75
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 104
+V +A++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 76 LVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKDDY 119
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 42 RLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILC 100
R FGT CA C + I ++V +A++ V+HL CF C CN + G+ Y+ D NK +C
Sbjct: 168 RRFGTK--CAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVC 225
Query: 101 EYDY 104
+ DY
Sbjct: 226 KDDY 229
>gi|261490776|ref|NP_001159787.1| LIM/homeobox protein Lhx8 [Sus scrofa]
gi|238683613|gb|ACR54090.1| LIM homeobox 8 [Sus scrofa]
Length = 295
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
DL WH CL C C LG ++ Y K I CK DY R +GT C+ C + I + +
Sbjct: 31 DLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYGT--RCSRCGRHIHSTDW 87
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RAK NVYHL CFAC C + G+ F L + K+LC Y+
Sbjct: 88 VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYD 130
>gi|449268911|gb|EMC79740.1| LIM homeobox transcription factor 1-alpha [Columba livia]
Length = 343
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 58/103 (56%), Gaps = 5/103 (4%)
Query: 6 WHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMR 65
WHE C+KC C L + T Y + + CK DY +LF T C++C K I E++MR
Sbjct: 25 WHEGCVKCAVC---LQPLAGTCYCRNRQLYCKHDYEKLFQTK--CSSCLKAIAPSELIMR 79
Query: 66 AKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQ 108
NVYH+ CF C +C R GD F L + ++LC DYE+ +
Sbjct: 80 VLENVYHVHCFYCCECERRLQRGDEFVLKEGQLLCRSDYEKEK 122
>gi|326666245|ref|XP_001922131.3| PREDICTED: LIM homeobox transcription factor 1-alpha-like [Danio
rerio]
Length = 396
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 61/111 (54%), Gaps = 6/111 (5%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WHE C+KC C L T Y + L+ CK DY +LF C+AC + I E+
Sbjct: 77 ELSWHETCVKCAVCRSALS---GTCYCRDRLLYCKHDYEKLF--VRKCSACLQAIGRSEL 131
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE-ERQVFCV 112
+MR VYHL CF+C +C R GD F L + ++LC DYE ER++
Sbjct: 132 IMRVLGQVYHLGCFSCCECERRLQRGDEFVLKEGQLLCRGDYEKEREMLAA 182
>gi|324529696|gb|ADY49033.1| LIM homeobox transcription factor 1-alpha, partial [Ascaris suum]
Length = 179
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 59/104 (56%), Gaps = 3/104 (2%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
+D FWHE+CL C C RL + ST + K + C+ D+ +LF + CA C + +
Sbjct: 1 MDEFWHENCLSCSTCHLRLSD-NSTCFIKDGHVYCREDHAQLF--SARCARCGITLQPTD 57
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V R N+ YH +CF+C CNH GD++ + D +++C DYE
Sbjct: 58 FVFRCLNSTYHAQCFSCVYCNHPLKKGDQYLILDGQVICRADYE 101
>gi|328925128|dbj|BAK19079.1| apterous A splicing isoform type B [Bombyx mori]
Length = 398
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 71/145 (48%), Gaps = 6/145 (4%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
AL+ WH CL+C C+C++ + Y + + I CK DY+RL+G CA C VI A
Sbjct: 79 ALERRWHTPCLRC--CECKMPLDSEQRCYARDSNIFCKNDYIRLYGPK-RCARCNTVISA 135
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFCVGDRFYLC 119
E+VMRA++ V+H+ CF+C CN GD + + D + C YE + G +
Sbjct: 136 SELVMRARDLVFHVHCFSCALCNTPLNKGDTYGIRDAAVYCRLHYETMPEY--GPHMAVP 193
Query: 120 DNKILCEYDYEERQVFANIAYNPSS 144
+C Y A+ PS
Sbjct: 194 GPPQMCPGTYAGPPPGAHYPPYPSP 218
>gi|297473064|ref|XP_002686347.1| PREDICTED: LIM/homeobox protein Lhx8 [Bos taurus]
gi|296489244|tpg|DAA31357.1| TPA: LIM domain family member (lim-4)-like [Bos taurus]
Length = 346
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
DL WH CL C C LG ++ Y K I CK DY R +GT C+ C + I + +
Sbjct: 82 DLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYGT--RCSRCGRHIHSTDW 138
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RAK NVYHL CFAC C + G+ F L + K+LC Y+
Sbjct: 139 VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYD 181
>gi|410922098|ref|XP_003974520.1| PREDICTED: insulin gene enhancer protein isl-1-like [Takifugu
rubripes]
Length = 331
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 61/116 (52%), Gaps = 5/116 (4%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+ DL WH CLKC C L E T + + CKRDY+RL+G CA C
Sbjct: 33 SPDLEWHAACLKCAECSQYLDE-SCTCFVRDGKTYCKRDYIRLYGIK--CAKCNIGFSKN 89
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE--ERQVFCVGD 114
+ VMRA++ VYH+ECF C C+ + GD F L D+ + C D++ ER GD
Sbjct: 90 DFVMRARSKVYHIECFRCVACSRQLIPGDEFALRDDGLFCRADHDVVERASLASGD 145
>gi|307174398|gb|EFN64917.1| LIM/homeobox protein Lhx3 [Camponotus floridanus]
Length = 467
Score = 80.1 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 40/106 (37%), Positives = 59/106 (55%), Gaps = 6/106 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
L+ WH CL C C RL + + + + CK D+ + FGT CA C + + +
Sbjct: 103 LERCWHARCLTCRDCGARLTD---KCFARNGHVFCKDDFFKRFGTK--CAGCGQGLAPSQ 157
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYEE 106
+V RA+ VYHL CF+C C+ + GD FYL D K++C+ DYE+
Sbjct: 158 VVRRAQELVYHLTCFSCALCSRQLDTGDEFYLMEDRKLVCKPDYEQ 203
>gi|94957756|ref|NP_001035556.1| LIM/homeobox protein Lhx8 [Gallus gallus]
gi|71800649|gb|AAZ41374.1| LIM homeodomain protein [Gallus gallus]
Length = 347
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
DL WH CL C C LG ++ Y K I CK DY R +GT C+ C + I + +
Sbjct: 83 DLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYGT--RCSRCGRHIHSTDW 139
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RAK NVYHL CFAC C + G+ F L + K+LC Y+
Sbjct: 140 VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYD 182
>gi|345321288|ref|XP_001521123.2| PREDICTED: LIM/homeobox protein Lhx8 isoform 1 [Ornithorhynchus
anatinus]
Length = 347
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
DL WH CL C C LG ++ Y K I CK DY R +GT C+ C + I + +
Sbjct: 83 DLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYGT--RCSRCGRHIHSTDW 139
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RAK NVYHL CFAC C + G+ F L + K+LC Y+
Sbjct: 140 VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYD 182
>gi|328925120|dbj|BAK19075.1| Bmptp-Z and Bmap-A fusion protein beta [Bombyx mori]
Length = 444
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 71/145 (48%), Gaps = 6/145 (4%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
AL+ WH CL+C C+C++ + Y + + I CK DY+RL+G CA C VI A
Sbjct: 147 ALERRWHTPCLRC--CECKMPLDSEQRCYARDSNIFCKNDYIRLYGPK-RCARCNTVISA 203
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFCVGDRFYLC 119
E+VMRA++ V+H+ CF+C CN GD + + D + C YE + G +
Sbjct: 204 SELVMRARDLVFHVHCFSCALCNTPLNKGDTYGIRDAAVYCRLHYETMPEY--GPHMAVP 261
Query: 120 DNKILCEYDYEERQVFANIAYNPSS 144
+C Y A+ PS
Sbjct: 262 GPPQMCPGTYAGPPPGAHYPPYPSP 286
>gi|403257739|ref|XP_003921454.1| PREDICTED: LIM/homeobox protein Lhx8 [Saimiri boliviensis
boliviensis]
Length = 346
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
DL WH CL C C LG ++ Y K I CK DY R +GT C+ C + I + +
Sbjct: 82 DLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYGT--RCSRCGRHIHSTDW 138
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RAK NVYHL CFAC C + G+ F L + K+LC Y+
Sbjct: 139 VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYD 181
>gi|355745377|gb|EHH50002.1| hypothetical protein EGM_00758, partial [Macaca fascicularis]
Length = 320
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
DL WH CL C C LG ++ Y K I CK DY R +GT C+ C + I + +
Sbjct: 56 DLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYGT--RCSRCGRHIHSTDW 112
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RAK NVYHL CFAC C + G+ F L + K+LC Y+
Sbjct: 113 VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYD 155
>gi|395821904|ref|XP_003784270.1| PREDICTED: LIM/homeobox protein Lhx8 [Otolemur garnettii]
Length = 346
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
DL WH CL C C LG ++ Y K I CK DY R +GT C+ C + I + +
Sbjct: 82 DLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYGT--RCSRCGRHIHSTDW 138
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RAK NVYHL CFAC C + G+ F L + K+LC Y+
Sbjct: 139 VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYD 181
>gi|224058535|ref|XP_002189228.1| PREDICTED: LIM/homeobox protein Lhx8 [Taeniopygia guttata]
Length = 347
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
DL WH CL C C LG ++ Y K I CK DY R +GT C+ C + I + +
Sbjct: 83 DLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYGT--RCSRCGRHIHSTDW 139
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RAK NVYHL CFAC C + G+ F L + K+LC Y+
Sbjct: 140 VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYD 182
>gi|358411510|ref|XP_589896.5| PREDICTED: LIM/homeobox protein Lhx8 [Bos taurus]
Length = 443
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
DL WH CL C C LG ++ Y K I CK DY R +GT C+ C + I + +
Sbjct: 189 DLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYGTR--CSRCGRHIHSTDW 245
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RAK NVYHL CFAC C + G+ F L + K+LC Y+
Sbjct: 246 VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYD 288
>gi|368711326|ref|NP_001243043.1| LIM/homeobox protein Lhx8 isoform 2 [Homo sapiens]
gi|395730366|ref|XP_003775714.1| PREDICTED: LIM/homeobox protein Lhx8 isoform 2 [Pongo abelii]
gi|410033125|ref|XP_003949492.1| PREDICTED: LIM/homeobox protein Lhx8 isoform 1 [Pan troglodytes]
gi|426330050|ref|XP_004026039.1| PREDICTED: LIM/homeobox protein Lhx8 isoform 2 [Gorilla gorilla
gorilla]
gi|441637563|ref|XP_004090066.1| PREDICTED: LIM/homeobox protein Lhx8 isoform 2 [Nomascus
leucogenys]
Length = 346
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
DL WH CL C C LG ++ Y K I CK DY R +GT C+ C + I + +
Sbjct: 82 DLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYGT--RCSRCGRHIHSTDW 138
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RAK NVYHL CFAC C + G+ F L + K+LC Y+
Sbjct: 139 VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYD 181
>gi|344278994|ref|XP_003411276.1| PREDICTED: LIM/homeobox protein Lhx8 [Loxodonta africana]
Length = 346
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
DL WH CL C C LG ++ Y K I CK DY R +GT C+ C + I + +
Sbjct: 82 DLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYGT--RCSRCGRHIHSTDW 138
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RAK NVYHL CFAC C + G+ F L + K+LC Y+
Sbjct: 139 VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYD 181
>gi|50083287|ref|NP_001001933.1| LIM/homeobox protein Lhx8 isoform 1 [Homo sapiens]
gi|114557210|ref|XP_524738.2| PREDICTED: LIM/homeobox protein Lhx8 isoform 2 [Pan troglodytes]
gi|297664648|ref|XP_002810744.1| PREDICTED: LIM/homeobox protein Lhx8 isoform 1 [Pongo abelii]
gi|397521070|ref|XP_003830626.1| PREDICTED: LIM/homeobox protein Lhx8 [Pan paniscus]
gi|426330048|ref|XP_004026038.1| PREDICTED: LIM/homeobox protein Lhx8 isoform 1 [Gorilla gorilla
gorilla]
gi|296434566|sp|Q68G74.2|LHX8_HUMAN RecName: Full=LIM/homeobox protein Lhx8; Short=LIM homeobox protein
8
Length = 356
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
DL WH CL C C LG ++ Y K I CK DY R +GT C+ C + I + +
Sbjct: 92 DLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYGT--RCSRCGRHIHSTDW 148
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RAK NVYHL CFAC C + G+ F L + K+LC Y+
Sbjct: 149 VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYD 191
>gi|327276679|ref|XP_003223095.1| PREDICTED: LIM/homeobox protein Lhx8-like [Anolis carolinensis]
Length = 379
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
DL WH CL C C LG ++ Y K I CK DY R +GT C+ C + I + +
Sbjct: 115 DLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYGT--RCSRCGRHIHSTDW 171
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RAK NVYHL CFAC C + G+ F L + K+LC Y+
Sbjct: 172 VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYD 214
>gi|440907910|gb|ELR57994.1| LIM/homeobox protein Lhx8 [Bos grunniens mutus]
Length = 375
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
DL WH CL C C LG ++ Y K I CK DY R +GT C+ C + I + +
Sbjct: 111 DLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYGT--RCSRCGRHIHSTDW 167
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RAK NVYHL CFAC C + G+ F L + K+LC Y+
Sbjct: 168 VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYD 210
>gi|281354377|gb|EFB29961.1| hypothetical protein PANDA_005098 [Ailuropoda melanoleuca]
Length = 351
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
DL WH CL C C LG ++ Y K I CK DY R +GT C+ C + I + +
Sbjct: 87 DLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYGT--RCSRCGRHIHSTDW 143
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RAK NVYHL CFAC C + G+ F L + K+LC Y+
Sbjct: 144 VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYD 186
>gi|345321290|ref|XP_003430404.1| PREDICTED: LIM/homeobox protein Lhx8 isoform 2 [Ornithorhynchus
anatinus]
Length = 347
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
DL WH CL C C LG ++ Y K I CK DY R +GT C+ C + I + +
Sbjct: 83 DLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYGT--RCSRCGRHIHSTDW 139
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RAK NVYHL CFAC C + G+ F L + K+LC Y+
Sbjct: 140 VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYD 182
>gi|297278964|ref|XP_001097664.2| PREDICTED: LIM/homeobox protein Lhx8-like [Macaca mulatta]
gi|402854981|ref|XP_003892128.1| PREDICTED: LIM/homeobox protein Lhx8 isoform 1 [Papio anubis]
Length = 356
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
DL WH CL C C LG ++ Y K I CK DY R +GT C+ C + I + +
Sbjct: 92 DLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYGT--RCSRCGRHIHSTDW 148
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RAK NVYHL CFAC C + G+ F L + K+LC Y+
Sbjct: 149 VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYD 191
>gi|51494804|gb|AAH40321.1| LIM homeobox 8 [Homo sapiens]
gi|312150920|gb|ADQ31972.1| LIM homeobox 8 [synthetic construct]
Length = 356
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
DL WH CL C C LG ++ Y K I CK DY R +GT C+ C + I + +
Sbjct: 92 DLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYGT--RCSRCGRHIHSTDW 148
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RAK NVYHL CFAC C + G+ F L + K+LC Y+
Sbjct: 149 VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYD 191
>gi|195484275|ref|XP_002090625.1| GE12696 [Drosophila yakuba]
gi|194176726|gb|EDW90337.1| GE12696 [Drosophila yakuba]
Length = 540
Score = 80.1 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 44/106 (41%), Positives = 55/106 (51%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A DL WH CLKC C L E T + + CKRDY+RLFGT C C
Sbjct: 70 APDLEWHAACLKCQECRQFLDE-SCTCFVRDGKTYCKRDYVRLFGTK--CDKCGNSFSKN 126
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKIL-CEYDYE 105
+ VMRAK ++H+ECF C C + GD F L D L C+ D++
Sbjct: 127 DFVMRAKTKIFHIECFRCSACARQLLPGDEFALRDAGALYCKEDHD 172
>gi|410967547|ref|XP_003990280.1| PREDICTED: LIM/homeobox protein Lhx8 [Felis catus]
Length = 346
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
DL WH CL C C LG ++ Y K I CK DY R +GT C+ C + I + +
Sbjct: 82 DLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYGT--RCSRCGRHIHSTDW 138
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RAK NVYHL CFAC C + G+ F L + K+LC Y+
Sbjct: 139 VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYD 181
>gi|402854983|ref|XP_003892129.1| PREDICTED: LIM/homeobox protein Lhx8 isoform 2 [Papio anubis]
Length = 346
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
DL WH CL C C LG ++ Y K I CK DY R +GT C+ C + I + +
Sbjct: 82 DLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYGT--RCSRCGRHIHSTDW 138
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RAK NVYHL CFAC C + G+ F L + K+LC Y+
Sbjct: 139 VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYD 181
>gi|194879942|ref|XP_001974333.1| GG21675 [Drosophila erecta]
gi|190657520|gb|EDV54733.1| GG21675 [Drosophila erecta]
Length = 534
Score = 80.1 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 44/106 (41%), Positives = 55/106 (51%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A DL WH CLKC C L E T + + CKRDY+RLFGT C C
Sbjct: 70 APDLEWHAACLKCQECRQFLDE-SCTCFVRDGKTYCKRDYVRLFGTK--CDKCGNSFSKN 126
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKIL-CEYDYE 105
+ VMRAK ++H+ECF C C + GD F L D L C+ D++
Sbjct: 127 DFVMRAKTKIFHIECFRCSACARQLLPGDEFALRDAGALYCKEDHD 172
>gi|332222205|ref|XP_003260257.1| PREDICTED: LIM/homeobox protein Lhx8 isoform 1 [Nomascus
leucogenys]
Length = 356
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
DL WH CL C C LG ++ Y K I CK DY R +GT C+ C + I + +
Sbjct: 92 DLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYGT--RCSRCGRHIHSTDW 148
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RAK NVYHL CFAC C + G+ F L + K+LC Y+
Sbjct: 149 VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYD 191
>gi|148237976|ref|NP_001079958.1| LIM homeobox 8 [Xenopus laevis]
gi|34784686|gb|AAH57730.1| MGC68912 protein [Xenopus laevis]
Length = 282
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
DL WH CL C C LG ++ Y K I CK DY R +GT C+ C + I A +
Sbjct: 110 DLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIYCKLDYFRRYGTR--CSRCGRHIHATDW 166
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RAK NVYHL CFAC C + G+ F L + K+LC Y+
Sbjct: 167 VRRAKGNVYHLACFACYSCKRQLSTGEEFALVEEKVLCRVHYD 209
>gi|444727546|gb|ELW68032.1| LIM/homeobox protein Lhx8 [Tupaia chinensis]
Length = 348
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
DL WH CL C C LG ++ Y K I CK DY R +GT C+ C + I + +
Sbjct: 84 DLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYGT--RCSRCGRHIHSTDW 140
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RAK NVYHL CFAC C + G+ F L + K+LC Y+
Sbjct: 141 VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYD 183
>gi|390466088|ref|XP_002751019.2| PREDICTED: LIM/homeobox protein Lhx8 [Callithrix jacchus]
Length = 346
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
DL WH CL C C LG ++ Y K I CK DY R +GT C+ C + I + +
Sbjct: 82 DLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYGT--RCSRCGRHIHSTDW 138
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RAK NVYHL CFAC C + G+ F L + K+LC Y+
Sbjct: 139 VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYD 181
>gi|345802215|ref|XP_547330.3| PREDICTED: LIM/homeobox protein Lhx8 [Canis lupus familiaris]
Length = 462
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
DL WH CL C C LG ++ Y K I CK DY R +GT C+ C + I + +
Sbjct: 208 DLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYGT--RCSRCGRHIHSTDW 264
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RAK NVYHL CFAC C + G+ F L + K+LC Y+
Sbjct: 265 VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYD 307
>gi|224994808|ref|NP_001139341.1| apterous a [Tribolium castaneum]
gi|224459212|gb|ACN43341.1| apterous a [Tribolium castaneum]
Length = 465
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 61/108 (56%), Gaps = 8/108 (7%)
Query: 1 ALDLFWHEDCLKCGCCDCRL---GEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVI 57
A+D WH CL+C C CR GE+ T + + I CK+DY RLFG CA C I
Sbjct: 145 AVDRRWHASCLQC--CQCRNTLDGEI--TCFSRDGNIYCKKDYYRLFGMK-RCARCQATI 199
Query: 58 PAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
+ E+VMRA++ V+H+ CF+C CN GD F + D +LC +E
Sbjct: 200 ISSELVMRARDLVFHVHCFSCAVCNSPLTKGDHFGMRDGAVLCRLHFE 247
>gi|1895062|gb|AAB49892.1| LIM homeobox protein [Drosophila melanogaster]
Length = 534
Score = 79.7 bits (195), Expect = 3e-13, Method: Composition-based stats.
Identities = 44/106 (41%), Positives = 55/106 (51%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A DL WH CLKC C L E T + + CKRDY+RLFGT C C
Sbjct: 70 APDLEWHAACLKCQECRQFLDE-SCTCFVRDGKTYCKRDYVRLFGTK--CDKCGNSFSKN 126
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKIL-CEYDYE 105
+ VMRAK ++H+ECF C C + GD F L D L C+ D++
Sbjct: 127 DFVMRAKTKIFHIECFRCSACARQLLPGDEFALRDAGALYCKEDHD 172
>gi|17136568|ref|NP_476775.1| tailup, isoform A [Drosophila melanogaster]
gi|195580000|ref|XP_002079844.1| GD21801 [Drosophila simulans]
gi|7298500|gb|AAF53720.1| tailup, isoform A [Drosophila melanogaster]
gi|194191853|gb|EDX05429.1| GD21801 [Drosophila simulans]
Length = 534
Score = 79.7 bits (195), Expect = 3e-13, Method: Composition-based stats.
Identities = 44/106 (41%), Positives = 55/106 (51%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A DL WH CLKC C L E T + + CKRDY+RLFGT C C
Sbjct: 70 APDLEWHAACLKCQECRQFLDE-SCTCFVRDGKTYCKRDYVRLFGTK--CDKCGNSFSKN 126
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKIL-CEYDYE 105
+ VMRAK ++H+ECF C C + GD F L D L C+ D++
Sbjct: 127 DFVMRAKTKIFHIECFRCSACARQLLPGDEFALRDAGALYCKEDHD 172
>gi|194223906|ref|XP_001916580.1| PREDICTED: insulin gene enhancer protein ISL-1 [Equus caballus]
Length = 349
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 63/118 (53%), Gaps = 5/118 (4%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+ DL WH CLKC C+ L E T + + CKRDY+RL+G CA C+
Sbjct: 33 SPDLEWHAACLKCAECNQYLDE-SCTCFVRDGKTYCKRDYIRLYGIK--CAKCSIGFSKN 89
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILC--EYDYEERQVFCVGDRF 116
+ VMRA++ VYH+ECF C C+ + GD F L ++ + C E+D ER GD
Sbjct: 90 DFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRAEHDVVERASLGAGDPL 147
>gi|195344936|ref|XP_002039032.1| GM17053 [Drosophila sechellia]
gi|194134162|gb|EDW55678.1| GM17053 [Drosophila sechellia]
Length = 534
Score = 79.7 bits (195), Expect = 3e-13, Method: Composition-based stats.
Identities = 44/106 (41%), Positives = 55/106 (51%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A DL WH CLKC C L E T + + CKRDY+RLFGT C C
Sbjct: 70 APDLEWHAACLKCQECRQFLDE-SCTCFVRDGKTYCKRDYVRLFGTK--CDKCGNSFSKN 126
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKIL-CEYDYE 105
+ VMRAK ++H+ECF C C + GD F L D L C+ D++
Sbjct: 127 DFVMRAKTKIFHIECFRCSACARQLLPGDEFALRDAGALYCKEDHD 172
>gi|441636332|ref|XP_003259172.2| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx4 [Nomascus
leucogenys]
Length = 415
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 55/96 (57%), Gaps = 5/96 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH CLKC C +L + + +A + CK D+ + FGT C AC + IP +
Sbjct: 90 LDRHWHSSCLKCADCQMQLAD---RCFSRAGSVYCKEDFFKRFGTK--CTACQQGIPPTQ 144
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNK 97
+V +A++ VYHL CFAC CN + GD FY D++
Sbjct: 145 VVRKAQDFVYHLHCFACIICNRQLATGDEFYXXDSE 180
>gi|426218775|ref|XP_004003612.1| PREDICTED: LIM/homeobox protein Lhx8 [Ovis aries]
Length = 442
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
DL WH CL C C LG ++ Y K I CK DY R +GT C+ C + I + +
Sbjct: 178 DLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYGT--RCSRCGRHIHSTDW 234
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RAK NVYHL CFAC C + G+ F L + K+LC Y+
Sbjct: 235 VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYD 277
>gi|194758653|ref|XP_001961576.1| GF14867 [Drosophila ananassae]
gi|190615273|gb|EDV30797.1| GF14867 [Drosophila ananassae]
Length = 550
Score = 79.7 bits (195), Expect = 3e-13, Method: Composition-based stats.
Identities = 44/106 (41%), Positives = 55/106 (51%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A DL WH CLKC C L E T + + CKRDY+RLFGT C C
Sbjct: 72 APDLEWHAACLKCQECRQFLDE-SCTCFVRDGKTYCKRDYVRLFGTK--CDKCGNSFSKN 128
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKIL-CEYDYE 105
+ VMRAK ++H+ECF C C + GD F L D L C+ D++
Sbjct: 129 DFVMRAKTKIFHIECFRCSACARQLLPGDEFALRDAGALYCKEDHD 174
>gi|291398678|ref|XP_002715959.1| PREDICTED: LIM homeobox 8 [Oryctolagus cuniculus]
Length = 371
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
DL WH CL C C LG ++ Y K I CK DY R +GT C+ C + I + +
Sbjct: 113 DLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYGTR--CSRCGRHIHSTDW 169
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RAK NVYHL CFAC C + G+ F L + K+LC Y+
Sbjct: 170 VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYD 212
>gi|133778048|gb|AAI27382.2| LIM homeobox 2 [Danio rerio]
gi|182888988|gb|AAI64490.1| Lhx2 protein [Danio rerio]
Length = 396
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 68 AVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF-SVQRCARCHLGISA 124
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA++ VYHL CF C CN GD F + D+ + C+ +E
Sbjct: 125 SEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCKLHFE 170
>gi|193575711|ref|XP_001949543.1| PREDICTED: LIM/homeobox protein Lhx2-like [Acyrthosiphon pisum]
Length = 356
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 67/126 (53%), Gaps = 7/126 (5%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D+ WH CL+C C L + T Y + I CK+DY RLF + CA C I A
Sbjct: 38 AVDMCWHIGCLQCAECKLPL-DTELTCYSRHGNIYCKQDYYRLF-SIKRCARCQGGIGAC 95
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFCVGDRFYLCD 120
++VMRAK+ VYH+ECFAC C C GD + + D + C DYE + R CD
Sbjct: 96 DLVMRAKDLVYHVECFACYACGAVLCKGDYYGVRDGAVFCRPDYER-----LKHRDMACD 150
Query: 121 NKILCE 126
+ +C
Sbjct: 151 LEPMCS 156
>gi|34733871|gb|AAQ81868.1| LIM homeobox gene protein 2 [Ambystoma mexicanum]
Length = 398
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 58/107 (54%), Gaps = 4/107 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 68 AVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF-SVQRCARCHLGISA 124
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EMVMRA++ VYHL CF C CN GD F + D+ + C +E
Sbjct: 125 SEMVMRARDLVYHLNCFTCSTCNKMLTTGDHFGMKDSLVYCRLHFES 171
>gi|198473929|ref|XP_001356494.2| GA10441 [Drosophila pseudoobscura pseudoobscura]
gi|198138172|gb|EAL33558.2| GA10441 [Drosophila pseudoobscura pseudoobscura]
Length = 548
Score = 79.7 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 44/106 (41%), Positives = 55/106 (51%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A DL WH CLKC C L E T + + CKRDY+RLFGT C C
Sbjct: 70 APDLEWHAACLKCQECRQFLDE-SCTCFVRDGKTYCKRDYVRLFGTK--CDKCGNSFSKN 126
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKIL-CEYDYE 105
+ VMRAK ++H+ECF C C + GD F L D L C+ D++
Sbjct: 127 DFVMRAKTKIFHIECFRCSACARQLLPGDEFALRDAGALYCKEDHD 172
>gi|195147414|ref|XP_002014675.1| GL18825 [Drosophila persimilis]
gi|194106628|gb|EDW28671.1| GL18825 [Drosophila persimilis]
Length = 550
Score = 79.7 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 44/106 (41%), Positives = 55/106 (51%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A DL WH CLKC C L E T + + CKRDY+RLFGT C C
Sbjct: 70 APDLEWHAACLKCQECRQFLDE-SCTCFVRDGKTYCKRDYVRLFGTK--CDKCGNSFSKN 126
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKIL-CEYDYE 105
+ VMRAK ++H+ECF C C + GD F L D L C+ D++
Sbjct: 127 DFVMRAKTKIFHIECFRCSACARQLLPGDEFALRDAGALYCKEDHD 172
>gi|326205389|dbj|BAJ84073.1| insulin gene enhancer protein ISL-2 [Homo sapiens]
Length = 189
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 60/102 (58%), Gaps = 3/102 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
DL WH CLKC C L E T + + CKRDY+RLFG CA C + ++
Sbjct: 45 DLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDYVRLFGIK--CAKCQVGFSSSDL 101
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 104
VMRA+++VYH+ECF C C+ + GD F L ++++LC D+
Sbjct: 102 VMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRADH 143
>gi|195386470|ref|XP_002051927.1| GJ24442 [Drosophila virilis]
gi|194148384|gb|EDW64082.1| GJ24442 [Drosophila virilis]
Length = 529
Score = 79.7 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 44/106 (41%), Positives = 55/106 (51%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A DL WH CLKC C L E T + + CKRDY+RLFGT C C
Sbjct: 70 APDLEWHAACLKCQECRQFLDE-SCTCFVRDGKTYCKRDYVRLFGTK--CDKCGNSFSKN 126
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKIL-CEYDYE 105
+ VMRAK ++H+ECF C C + GD F L D L C+ D++
Sbjct: 127 DFVMRAKTKIFHIECFRCSACARQLLPGDEFALRDAGALYCKEDHD 172
>gi|395510266|ref|XP_003759400.1| PREDICTED: insulin gene enhancer protein ISL-1 isoform 2
[Sarcophilus harrisii]
Length = 354
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 63/118 (53%), Gaps = 5/118 (4%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+ DL WH CLKC C+ L E T + + CKRDY+RL+G CA C+
Sbjct: 33 SPDLEWHAACLKCAECNQYLDET-CTCFVRDGKTYCKRDYIRLYGIK--CAKCSIGFSKN 89
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE--ERQVFCVGDRF 116
+ VMRA++ VYH+ECF C C+ + GD F L ++ + C D++ ER GD
Sbjct: 90 DFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVVERASLGAGDPL 147
>gi|444707251|gb|ELW48535.1| LIM/homeobox protein Lhx2 [Tupaia chinensis]
Length = 442
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 58/106 (54%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 68 AVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF-SVQRCARCHLGISA 124
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA++ VYHL CF C CN GD F + D+ + C +E
Sbjct: 125 SEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFE 170
>gi|301768533|ref|XP_002919684.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Ailuropoda
melanoleuca]
Length = 349
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 63/118 (53%), Gaps = 5/118 (4%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+ DL WH CLKC C+ L E T + + CKRDY+RL+G CA C+
Sbjct: 33 SPDLEWHAACLKCAECNQYLDE-SCTCFVRDGKTYCKRDYIRLYGIK--CAKCSIGFSKN 89
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE--ERQVFCVGDRF 116
+ VMRA++ VYH+ECF C C+ + GD F L ++ + C D++ ER GD
Sbjct: 90 DFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVVERASLGTGDPL 147
>gi|51571947|ref|NP_001003980.1| LIM/homeobox protein Lhx8 [Danio rerio]
gi|50953779|gb|AAT90496.1| Lhx7 [Danio rerio]
gi|108742021|gb|AAI17602.1| LIM homeobox 8 [Danio rerio]
Length = 332
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
D+ WH CL C C LG S Y K I CK DY R +GT CA C + I + +
Sbjct: 68 DMCWHVRCLSCSVCQTSLGRHIS-CYIKEKEIFCKLDYFRKYGT--RCAHCGRNIHSNDW 124
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RAK N YHL CFAC C + G+ F L D ++LC Y+
Sbjct: 125 VRRAKGNTYHLACFACFSCKRQLSTGEEFALVDERVLCRVHYD 167
>gi|126315044|ref|XP_001365199.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Monodelphis
domestica]
gi|395510264|ref|XP_003759399.1| PREDICTED: insulin gene enhancer protein ISL-1 isoform 1
[Sarcophilus harrisii]
Length = 349
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 63/118 (53%), Gaps = 5/118 (4%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+ DL WH CLKC C+ L E T + + CKRDY+RL+G CA C+
Sbjct: 33 SPDLEWHAACLKCAECNQYLDET-CTCFVRDGKTYCKRDYIRLYGIK--CAKCSIGFSKN 89
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE--ERQVFCVGDRF 116
+ VMRA++ VYH+ECF C C+ + GD F L ++ + C D++ ER GD
Sbjct: 90 DFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVVERASLGAGDPL 147
>gi|260794979|ref|XP_002592484.1| LIM class homeodomain transcription factor, apterous subclass
[Branchiostoma floridae]
gi|229277704|gb|EEN48495.1| LIM class homeodomain transcription factor, apterous subclass
[Branchiostoma floridae]
Length = 330
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/105 (43%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D WH CLKC CD RL + T + K I C+ DY R F C C I A
Sbjct: 30 AVDRQWHSACLKCCECDVRL-DCELTCFSKDGRIYCREDYYRRFAVQ-RCGRCHLGITAR 87
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA+++VYHL CF C C+ GD F + + I C Y YE
Sbjct: 88 EMVMRARDSVYHLACFTCVTCDKALTTGDEFGMQGSAIYCRYHYE 132
>gi|395505659|ref|XP_003757157.1| PREDICTED: LIM/homeobox protein Lhx2 [Sarcophilus harrisii]
Length = 408
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 58/106 (54%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 68 AVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF-SVQRCARCHLGISA 124
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA++ VYHL CF C CN GD F + D+ + C +E
Sbjct: 125 SEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFE 170
>gi|187171273|ref|NP_001035099.3| LIM/homeobox protein Lhx2 [Danio rerio]
Length = 427
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 58/106 (54%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 99 AVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF-SVQRCARCHLGISA 155
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA++ VYHL CF C CN GD F + D+ + C +E
Sbjct: 156 SEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFE 201
>gi|345304657|ref|XP_001508080.2| PREDICTED: insulin gene enhancer protein ISL-1-like
[Ornithorhynchus anatinus]
Length = 382
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+ DL WH CLKC C+ L E T + + CKRDY+RL+G CA C+
Sbjct: 66 SPDLEWHAACLKCAECNQYLDET-CTCFVRDGKTYCKRDYIRLYGIK--CAKCSIGFSKN 122
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE--ERQVFCVGD 114
+ VMRA++ VYH+ECF C C+ + GD F L ++ + C D++ ER GD
Sbjct: 123 DFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVVERASLGAGD 178
>gi|344243883|gb|EGV99986.1| LIM/homeobox protein Lhx2 [Cricetulus griseus]
Length = 385
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 58/106 (54%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 51 AVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF-SVQRCARCHLGISA 107
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA++ VYHL CF C CN GD F + D+ + C +E
Sbjct: 108 SEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFE 153
>gi|291240697|ref|XP_002740254.1| PREDICTED: LIM class homeodomain transcription factor, Lhx6/8
subclass-like [Saccoglossus kowalevskii]
Length = 283
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 59/101 (58%), Gaps = 3/101 (2%)
Query: 6 WHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMR 65
WH CL+C C LG S + K + I CK DY+R FGT C+ C + I + + V +
Sbjct: 42 WHVRCLRCCICQTGLGGQQS-CFTKDDNIYCKMDYIRQFGT--KCSRCMRNIQSNDWVRK 98
Query: 66 AKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
AKN+VYHL CFAC C + G+ F + +NK+LC+ Y E
Sbjct: 99 AKNHVYHLACFACDNCKRQLSTGEEFAMQENKVLCKTHYLE 139
>gi|432095435|gb|ELK26634.1| LIM/homeobox protein Lhx2 [Myotis davidii]
Length = 389
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 58/106 (54%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 51 AVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF-SVQRCARCHLGISA 107
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA++ VYHL CF C CN GD F + D+ + C +E
Sbjct: 108 SEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFE 153
>gi|190338019|gb|AAI62549.1| LIM homeobox 2 [Danio rerio]
Length = 396
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 58/106 (54%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 68 AVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF-SVQRCARCHLGISA 124
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA++ VYHL CF C CN GD F + D+ + C +E
Sbjct: 125 SEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFE 170
>gi|94400881|ref|NP_059035.3| insulin gene enhancer protein ISL-1 [Rattus norvegicus]
gi|115387114|ref|NP_002193.2| insulin gene enhancer protein ISL-1 [Homo sapiens]
gi|149642655|ref|NP_001092600.1| insulin gene enhancer protein ISL-1 [Bos taurus]
gi|162287065|ref|NP_067434.3| insulin gene enhancer protein ISL-1 [Mus musculus]
gi|291395329|ref|XP_002714072.1| PREDICTED: islet-1 [Oryctolagus cuniculus]
gi|311273676|ref|XP_003133982.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Sus scrofa]
gi|332254884|ref|XP_003276562.1| PREDICTED: insulin gene enhancer protein ISL-1 [Nomascus
leucogenys]
gi|332821395|ref|XP_001150633.2| PREDICTED: insulin gene enhancer protein ISL-1 isoform 2 [Pan
troglodytes]
gi|344272509|ref|XP_003408074.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Loxodonta
africana]
gi|345799577|ref|XP_853721.2| PREDICTED: insulin gene enhancer protein ISL-1 isoform 1 [Canis
lupus familiaris]
gi|348568904|ref|XP_003470238.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Cavia
porcellus]
gi|354472426|ref|XP_003498440.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Cricetulus
griseus]
gi|395818859|ref|XP_003782831.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Otolemur
garnettii]
gi|397514229|ref|XP_003827396.1| PREDICTED: insulin gene enhancer protein ISL-1 [Pan paniscus]
gi|402871509|ref|XP_003899703.1| PREDICTED: insulin gene enhancer protein ISL-1 [Papio anubis]
gi|403267625|ref|XP_003925922.1| PREDICTED: insulin gene enhancer protein ISL-1 [Saimiri boliviensis
boliviensis]
gi|410949527|ref|XP_003981473.1| PREDICTED: insulin gene enhancer protein ISL-1 [Felis catus]
gi|47606422|sp|P61374.1|ISL1_RAT RecName: Full=Insulin gene enhancer protein ISL-1; Short=Islet-1
gi|47606423|sp|P61371.1|ISL1_HUMAN RecName: Full=Insulin gene enhancer protein ISL-1; Short=Islet-1
gi|47606424|sp|P61372.1|ISL1_MOUSE RecName: Full=Insulin gene enhancer protein ISL-1; Short=Islet-1
gi|47606425|sp|P61373.1|ISL1_MESAU RecName: Full=Insulin gene enhancer protein ISL-1; Short=Islet-1
gi|2137056|pir||I67418 transcription factor isl-1 - hamster
gi|4261764|gb|AAD14064.1|S70721_1 homeobox [Homo sapiens]
gi|545787|gb|AAB30128.1| homeobox [Rattus sp.]
gi|4469284|emb|CAB38446.1| Lim-homeodomain protein Islet1 [Mus musculus]
gi|22658390|gb|AAH31213.1| ISL LIM homeobox 1 [Homo sapiens]
gi|30065750|gb|AAP20776.1| Isl-1 [Cricetulus sp.]
gi|119575256|gb|EAW54861.1| ISL1 transcription factor, LIM/homeodomain, (islet-1) [Homo
sapiens]
gi|123996141|gb|ABM85672.1| ISL1 transcription factor, LIM/homeodomain, (islet-1) [synthetic
construct]
gi|124298178|gb|AAI32264.1| ISL1 transcription factor, LIM/homeodomain [Mus musculus]
gi|124375804|gb|AAI32610.1| ISL1 transcription factor, LIM/homeodomain [Mus musculus]
gi|148686421|gb|EDL18368.1| ISL1 transcription factor, LIM/homeodomain, isoform CRA_b [Mus
musculus]
gi|148877422|gb|AAI46164.1| ISL1 protein [Bos taurus]
gi|149059388|gb|EDM10395.1| ISL1 transcription factor, LIM/homeodomain 1 [Rattus norvegicus]
gi|157928248|gb|ABW03420.1| ISL LIM homeobox 1 [synthetic construct]
gi|261861196|dbj|BAI47120.1| ISL LIM homeobox 1 [synthetic construct]
gi|296475787|tpg|DAA17902.1| TPA: islet-1 [Bos taurus]
gi|351712707|gb|EHB15626.1| Insulin gene enhancer protein ISL-1 [Heterocephalus glaber]
gi|355691298|gb|EHH26483.1| Insulin gene enhancer protein ISL-1 [Macaca mulatta]
gi|226841|prf||1608207A insulin gene enhancer binding protein Isl-1
Length = 349
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 63/118 (53%), Gaps = 5/118 (4%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+ DL WH CLKC C+ L E T + + CKRDY+RL+G CA C+
Sbjct: 33 SPDLEWHAACLKCAECNQYLDE-SCTCFVRDGKTYCKRDYIRLYGIK--CAKCSIGFSKN 89
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE--ERQVFCVGDRF 116
+ VMRA++ VYH+ECF C C+ + GD F L ++ + C D++ ER GD
Sbjct: 90 DFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVVERASLGAGDPL 147
>gi|431908581|gb|ELK12174.1| Insulin protein enhancer protein ISL-1 [Pteropus alecto]
Length = 383
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+ DL WH CLKC C+ L E T + + CKRDY+RL+G CA C+
Sbjct: 67 SPDLEWHAACLKCAECNQYLDE-SCTCFVRDGKTYCKRDYIRLYGIK--CAKCSIGFSKN 123
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE--ERQVFCVGD 114
+ VMRA++ VYH+ECF C C+ + GD F L ++ + C D++ ER GD
Sbjct: 124 DFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVVERASLGAGD 179
>gi|426223060|ref|XP_004005697.1| PREDICTED: LIM/homeobox protein Lhx2 [Ovis aries]
Length = 404
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 58/106 (54%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 68 AVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF-SVQRCARCHLGISA 124
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA++ VYHL CF C CN GD F + D+ + C +E
Sbjct: 125 SEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFE 170
>gi|4406518|gb|AAD20013.1| LIM-homeodomain protein HLHX2 [Homo sapiens]
Length = 389
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 58/106 (54%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 51 AVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF-SVQRCARCHLGISA 107
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA++ VYHL CF C CN GD F + D+ + C +E
Sbjct: 108 SEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFE 153
>gi|533419|gb|AAA81946.1| ISL-1 [Homo sapiens]
Length = 346
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+ DL WH CLKC C+ L E T + + CKRDY+RL+G CA C+
Sbjct: 30 SPDLEWHAACLKCAECNQYLDE-SCTCFVRDGKTYCKRDYIRLYGIK--CAKCSIGFSKN 86
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE--ERQVFCVGD 114
+ VMRA++ VYH+ECF C C+ + GD F L ++ + C D++ ER GD
Sbjct: 87 DFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVVERASLGAGD 142
>gi|6754538|ref|NP_034840.1| LIM/homeobox protein Lhx2 [Mus musculus]
gi|157817308|ref|NP_001100041.1| LIM/homeobox protein Lhx2 [Rattus norvegicus]
gi|8134552|sp|Q9Z0S2.1|LHX2_MOUSE RecName: Full=LIM/homeobox protein Lhx2; Short=Homeobox protein
LH-2; Short=LIM homeobox protein 2
gi|4406516|gb|AAD20012.1| LIM-homeodomain protein MLHX2 [Mus musculus]
gi|26343551|dbj|BAC35432.1| unnamed protein product [Mus musculus]
gi|33416474|gb|AAH55741.1| LIM homeobox protein 2 [Mus musculus]
gi|149047902|gb|EDM00518.1| LIM homeobox protein 2 (predicted) [Rattus norvegicus]
Length = 406
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 58/106 (54%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 68 AVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF-SVQRCARCHLGISA 124
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA++ VYHL CF C CN GD F + D+ + C +E
Sbjct: 125 SEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFE 170
>gi|281342386|gb|EFB17970.1| hypothetical protein PANDA_008333 [Ailuropoda melanoleuca]
Length = 340
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+ DL WH CLKC C+ L E T + + CKRDY+RL+G CA C+
Sbjct: 24 SPDLEWHAACLKCAECNQYLDE-SCTCFVRDGKTYCKRDYIRLYGIK--CAKCSIGFSKN 80
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE--ERQVFCVGD 114
+ VMRA++ VYH+ECF C C+ + GD F L ++ + C D++ ER GD
Sbjct: 81 DFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVVERASLGTGD 136
>gi|426246540|ref|XP_004017051.1| PREDICTED: insulin gene enhancer protein ISL-1 [Ovis aries]
Length = 349
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 63/118 (53%), Gaps = 5/118 (4%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+ DL WH CLKC C+ L E T + + CKRDY+RL+G CA C+
Sbjct: 33 SPDLEWHAACLKCAECNQYLDE-SCTCFVRDGKTYCKRDYIRLYGIK--CAKCSIGFSKN 89
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE--ERQVFCVGDRF 116
+ VMRA++ VYH+ECF C C+ + GD F L ++ + C D++ ER GD
Sbjct: 90 DFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVVERASLGAGDPL 147
>gi|296190791|ref|XP_002743350.1| PREDICTED: LIM/homeobox protein Lhx2 [Callithrix jacchus]
Length = 365
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 58/106 (54%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 27 AVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF-SVQRCARCHLGISA 83
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA++ VYHL CF C CN GD F + D+ + C +E
Sbjct: 84 SEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFE 129
>gi|123981310|gb|ABM82484.1| ISL1 transcription factor, LIM/homeodomain, (islet-1) [synthetic
construct]
Length = 349
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+ DL WH CLKC C+ L E T + + CKRDY+RL+G CA C+
Sbjct: 33 SPDLEWHAACLKCAECNQYLDE-SCTCFVRDGKTYCKRDYIRLYGIK--CAKCSIGFSKN 89
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE--ERQVFCVGD 114
+ VMRA++ VYH+ECF C C+ + GD F L ++ + C D++ ER GD
Sbjct: 90 DFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVVERASLGAGD 145
>gi|75993708|gb|ABA33890.1| lim homeobox transcription factor 2 [Danio rerio]
Length = 396
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 58/106 (54%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 68 AVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF-SVQRCARCHLGISA 124
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA++ VYHL CF C CN GD F + D+ + C +E
Sbjct: 125 SEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFE 170
>gi|28569978|dbj|BAC57891.1| transcription factor islet-1 isoform beta [Mus musculus]
gi|148686420|gb|EDL18367.1| ISL1 transcription factor, LIM/homeodomain, isoform CRA_a [Mus
musculus]
Length = 326
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+ DL WH CLKC C+ L E T + + CKRDY+RL+G CA C+
Sbjct: 33 SPDLEWHAACLKCAECNQYLDE-SCTCFVRDGKTYCKRDYIRLYGIK--CAKCSIGFSKN 89
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE--ERQVFCVGD 114
+ VMRA++ VYH+ECF C C+ + GD F L ++ + C D++ ER GD
Sbjct: 90 DFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVVERASLGAGD 145
>gi|344271943|ref|XP_003407796.1| PREDICTED: LIM/homeobox protein Lhx2 [Loxodonta africana]
Length = 365
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 58/106 (54%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 27 AVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF-SVQRCARCHLGISA 83
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA++ VYHL CF C CN GD F + D+ + C +E
Sbjct: 84 SEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFE 129
>gi|340722532|ref|XP_003399658.1| PREDICTED: LIM/homeobox protein Lhx3-like [Bombus terrestris]
Length = 486
Score = 79.3 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 40/109 (36%), Positives = 59/109 (54%), Gaps = 9/109 (8%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYL---RLFGTTGYCAACTKVIP 58
L+ WH CL C C RL + + + + CK D+ R FGT CA C + +
Sbjct: 127 LERCWHARCLTCRDCGARLTD---KCFARNGHVFCKDDFFKYGRRFGTK--CAGCGQGLA 181
Query: 59 AFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYEE 106
++V RA+ +YHL CF+C C+ + GD FYL D K++C+ DYE+
Sbjct: 182 PSQVVRRAQELIYHLTCFSCALCSRQLDTGDEFYLMEDRKLVCKPDYEQ 230
>gi|281427312|ref|NP_001163990.1| LIM/homeobox protein Lhx2 [Sus scrofa]
gi|300794175|ref|NP_001178104.1| LIM/homeobox protein Lhx2 [Bos taurus]
gi|239937382|dbj|BAH79127.1| LIM homeobox protein 2 [Sus scrofa]
gi|296482193|tpg|DAA24308.1| TPA: LIM homeobox protein 2-like [Bos taurus]
Length = 406
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 58/106 (54%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 68 AVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF-SVQRCARCHLGISA 124
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA++ VYHL CF C CN GD F + D+ + C +E
Sbjct: 125 SEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFE 170
>gi|301769255|ref|XP_002920044.1| PREDICTED: LIM/homeobox protein Lhx2-like isoform 1 [Ailuropoda
melanoleuca]
gi|345806102|ref|XP_863668.2| PREDICTED: LIM/homeobox protein Lhx2 isoform 2 [Canis lupus
familiaris]
gi|281350174|gb|EFB25758.1| hypothetical protein PANDA_008723 [Ailuropoda melanoleuca]
Length = 406
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 58/106 (54%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 68 AVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF-SVQRCARCHLGISA 124
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA++ VYHL CF C CN GD F + D+ + C +E
Sbjct: 125 SEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFE 170
>gi|74213688|dbj|BAE35644.1| unnamed protein product [Mus musculus]
Length = 367
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
DL WH CL C C LG ++ Y K I CK DY R +GT C+ C + I + +
Sbjct: 113 DLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYGTR--CSRCGRHIHSIDW 169
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RAK NVYHL CFAC C + G+ F L + K+LC ++
Sbjct: 170 VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHFD 212
>gi|4530371|gb|AAD22008.1| LIM homeobox protein 9 [Mus musculus]
Length = 378
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 67 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 123
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA+++VYHL CF C CN GD F + D+ + C +E
Sbjct: 124 SEMVMRARDSVYHLSCFTCFTCNKTLTTGDHFGMKDSLVYCRAHFE 169
>gi|357622660|gb|EHJ74086.1| apterous a [Danaus plexippus]
Length = 397
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 62/106 (58%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
AL+ WH CL+C C+C++ + Y + + I CK DY RL+G+ C+ C I A
Sbjct: 78 ALERRWHTPCLRC--CECKMPLDSEQRCYARDSNIFCKNDYFRLYGSK-RCSRCNTTISA 134
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
E+VMRA++ V+H+ CF+C C+ R GD F + D+ + C YE
Sbjct: 135 SELVMRARDLVFHVHCFSCALCSARLTKGDTFGIRDSAVYCRLHYE 180
>gi|10257388|dbj|BAB13725.1| transcription factor HpLim1 [Hemicentrotus pulcherrimus]
Length = 480
Score = 79.3 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 36/104 (34%), Positives = 56/104 (53%), Gaps = 6/104 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH C++C C +L E + + + CK D+ R +GT CA C + I +
Sbjct: 21 LDRPWHVKCVQCCECKAKLTE---KCFSREGKLFCKNDFFRRYGTK--CAGCLQGILPSD 75
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 104
+V RA++ V+HL CF C C + G+ Y+ D N+ +C+ DY
Sbjct: 76 LVRRARSKVFHLNCFTCMVCRKQLSTGEELYVVDENQFICKEDY 119
>gi|30795196|ref|NP_004780.3| LIM/homeobox protein Lhx2 [Homo sapiens]
gi|297685314|ref|XP_002820237.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 2 [Pongo abelii]
gi|397473226|ref|XP_003808118.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 1 [Pan paniscus]
gi|426362988|ref|XP_004048630.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 1 [Gorilla gorilla
gorilla]
gi|8247936|sp|P50458.2|LHX2_HUMAN RecName: Full=LIM/homeobox protein Lhx2; Short=Homeobox protein
LH-2; Short=LIM homeobox protein 2
gi|62739692|gb|AAH93662.1| LIM homeobox 2 [Homo sapiens]
gi|85567249|gb|AAI12186.1| LIM homeobox protein 2 [Homo sapiens]
gi|119607982|gb|EAW87576.1| LIM homeobox 2, isoform CRA_a [Homo sapiens]
gi|167773563|gb|ABZ92216.1| LIM homeobox 2 [synthetic construct]
gi|261859194|dbj|BAI46119.1| LIM homeobox 2 [synthetic construct]
Length = 406
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 58/106 (54%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 68 AVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF-SVQRCARCHLGISA 124
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA++ VYHL CF C CN GD F + D+ + C +E
Sbjct: 125 SEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFE 170
>gi|291408369|ref|XP_002720520.1| PREDICTED: LIM homeobox protein 2-like [Oryctolagus cuniculus]
Length = 406
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 58/106 (54%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 68 AVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF-SVQRCARCHLGISA 124
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA++ VYHL CF C CN GD F + D+ + C +E
Sbjct: 125 SEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFE 170
>gi|167859076|gb|ACA04473.1| Lim1 [Strongylocentrotus purpuratus]
Length = 480
Score = 79.3 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 36/104 (34%), Positives = 56/104 (53%), Gaps = 6/104 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH C++C C +L E + + + CK D+ R +GT CA C + I +
Sbjct: 21 LDRPWHVKCVQCCECKAKLTE---KCFSREGKLFCKNDFFRRYGTK--CAGCLQGILPSD 75
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 104
+V RA++ V+HL CF C C + G+ Y+ D N+ +C+ DY
Sbjct: 76 LVRRARSKVFHLNCFTCMVCRKQLSTGEELYVVDENQFICKEDY 119
>gi|403299862|ref|XP_003940693.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 1 [Saimiri boliviensis
boliviensis]
Length = 406
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 58/106 (54%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 68 AVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF-SVQRCARCHLGISA 124
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA++ VYHL CF C CN GD F + D+ + C +E
Sbjct: 125 SEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFE 170
>gi|348570110|ref|XP_003470840.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 3 [Cavia porcellus]
Length = 404
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 58/106 (54%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 67 AVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF-SVQRCARCHLGISA 123
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA++ VYHL CF C CN GD F + D+ + C +E
Sbjct: 124 SEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFE 169
>gi|348570108|ref|XP_003470839.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 2 [Cavia porcellus]
Length = 406
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 58/106 (54%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 68 AVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF-SVQRCARCHLGISA 124
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA++ VYHL CF C CN GD F + D+ + C +E
Sbjct: 125 SEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFE 170
>gi|332229975|ref|XP_003264161.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 1 [Nomascus
leucogenys]
Length = 406
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 58/106 (54%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 68 AVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF-SVQRCARCHLGISA 124
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA++ VYHL CF C CN GD F + D+ + C +E
Sbjct: 125 SEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFE 170
>gi|114626624|ref|XP_528427.2| PREDICTED: LIM/homeobox protein Lhx2 [Pan troglodytes]
Length = 365
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 58/106 (54%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 27 AVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF-SVQRCARCHLGISA 83
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA++ VYHL CF C CN GD F + D+ + C +E
Sbjct: 84 SEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFE 129
>gi|47551255|ref|NP_999810.1| Lim homeodomain transcription factor 1 [Strongylocentrotus
purpuratus]
gi|33286229|gb|AAQ01662.1| Lim homeodomain transcription factor 1 [Strongylocentrotus
purpuratus]
Length = 480
Score = 79.3 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 36/104 (34%), Positives = 56/104 (53%), Gaps = 6/104 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH C++C C +L E + + + CK D+ R +GT CA C + I +
Sbjct: 21 LDRPWHVKCVQCCECKAKLTE---KCFSREGKLFCKNDFFRRYGTK--CAGCLQGILPSD 75
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 104
+V RA++ V+HL CF C C + G+ Y+ D N+ +C+ DY
Sbjct: 76 LVRRARSKVFHLNCFTCMVCRKQLSTGEELYVVDENQFICKEDY 119
>gi|355749907|gb|EHH54245.1| Insulin gene enhancer protein ISL-1 [Macaca fascicularis]
Length = 349
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 63/118 (53%), Gaps = 5/118 (4%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+ DL WH CLKC C+ L E T + + CKRDY+RL+G CA C+
Sbjct: 33 SPDLEWHAACLKCAECNQYLDE-SCTCFVRDGKTYCKRDYIRLYGIK--CAKCSIGFSKN 89
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE--ERQVFCVGDRF 116
+ VMRA++ VYH+ECF C C+ + GD F L ++ + C D++ ER GD
Sbjct: 90 DFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVVERASLGAGDPL 147
>gi|225708026|gb|ACO09859.1| LIM/homeobox protein Lhx9 [Osmerus mordax]
Length = 317
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 58/106 (54%), Gaps = 5/106 (4%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R + CA C I A
Sbjct: 86 AVDKRWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRF--SVQRCARCHLGISA 141
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA+++VYHL CF C CN GD F + D+ + C +E
Sbjct: 142 SEMVMRARDSVYHLSCFTCTTCNKTLTTGDHFGMKDSLVYCRVHFE 187
>gi|395824161|ref|XP_003785339.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 1 [Otolemur garnettii]
Length = 406
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 58/106 (54%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 68 AVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF-SVQRCARCHLGISA 124
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA++ VYHL CF C CN GD F + D+ + C +E
Sbjct: 125 SEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFE 170
>gi|345319701|ref|XP_001512541.2| PREDICTED: LIM domain only protein 3-like, partial
[Ornithorhynchus anatinus]
Length = 70
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/41 (87%), Positives = 38/41 (92%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYL 41
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYL
Sbjct: 30 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYL 70
>gi|270004609|gb|EFA01057.1| hypothetical protein TcasGA2_TC003974 [Tribolium castaneum]
Length = 218
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 58/106 (54%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L + T + + I CK DY R+F T C C I A
Sbjct: 45 AVDRQWHASCLKC--CECKLPLDTELTCFARDGNIYCKEDYYRMFAVT-RCGRCQAGISA 101
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
E+VMRA+++VYHL CF+C C GD F + D I C YE
Sbjct: 102 NELVMRARDSVYHLHCFSCTSCGIPLSKGDHFGMRDGLIYCRPHYE 147
>gi|387763115|ref|NP_001248721.1| LIM/homeobox protein Lhx2 [Macaca mulatta]
gi|402896424|ref|XP_003911300.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 1 [Papio anubis]
gi|380818036|gb|AFE80892.1| LIM/homeobox protein Lhx2 [Macaca mulatta]
Length = 406
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 58/106 (54%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 68 AVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF-SVQRCARCHLGISA 124
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA++ VYHL CF C CN GD F + D+ + C +E
Sbjct: 125 SEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFE 170
>gi|440908077|gb|ELR58138.1| Insulin enhancer protein ISL-1, partial [Bos grunniens mutus]
Length = 359
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 63/118 (53%), Gaps = 5/118 (4%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+ DL WH CLKC C+ L E T + + CKRDY+RL+G CA C+
Sbjct: 43 SPDLEWHAACLKCAECNQYLDE-SCTCFVRDGKTYCKRDYIRLYGIK--CAKCSIGFSKN 99
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE--ERQVFCVGDRF 116
+ VMRA++ VYH+ECF C C+ + GD F L ++ + C D++ ER GD
Sbjct: 100 DFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVVERASLGAGDPL 157
>gi|355567447|gb|EHH23788.1| LIM/homeobox protein Lhx2 [Macaca mulatta]
Length = 406
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 58/106 (54%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 68 AVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF-SVQRCARCHLGISA 124
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA++ VYHL CF C CN GD F + D+ + C +E
Sbjct: 125 SEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFE 170
>gi|301769257|ref|XP_002920045.1| PREDICTED: LIM/homeobox protein Lhx2-like isoform 2 [Ailuropoda
melanoleuca]
Length = 404
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 58/106 (54%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 67 AVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF-SVQRCARCHLGISA 123
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA++ VYHL CF C CN GD F + D+ + C +E
Sbjct: 124 SEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFE 169
>gi|122053881|gb|ABM65925.1| LMO1 [Ateles geoffroyi]
gi|124013575|gb|ABM88039.1| LMO1 [Macaca nemestrina]
gi|124054184|gb|ABM89286.1| LMO1 [Pongo pygmaeus]
Length = 70
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/41 (87%), Positives = 38/41 (92%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYL 41
ALD +WHEDCLKC CCDCRLGEVGSTLY KANLILC+RDYL
Sbjct: 30 ALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYL 70
>gi|431897001|gb|ELK06265.1| LIM/homeobox protein Lhx8 [Pteropus alecto]
Length = 306
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
DL WH CL C C LG ++ Y K I CK DY R +GT C+ C + I + +
Sbjct: 113 DLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYGT--RCSRCGRHIHSTDW 169
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RAK NVYHL CFAC C + G+ F L + K+LC Y+
Sbjct: 170 VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYD 212
>gi|508712|gb|AAB08752.1| LIM-homeobox domain protein [Homo sapiens]
Length = 423
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 58/106 (54%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 67 AVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF-SVQRCARCHLGISA 123
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA++ VYHL CF C CN GD F + D+ + C +E
Sbjct: 124 SEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFE 169
>gi|47217859|emb|CAG02352.1| unnamed protein product [Tetraodon nigroviridis]
Length = 235
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 59/103 (57%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
DL WH CLKC C L E T + + CKRDY+RLFG CA C + ++
Sbjct: 45 DLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDYVRLFGIK--CAKCNLGFSSSDL 101
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
VMRA+++VYH+ECF C C+ + GD F L + ++LC D+
Sbjct: 102 VMRARDHVYHIECFRCSVCSRQLLPGDEFSLREEELLCRADHS 144
>gi|449513065|ref|XP_004175649.1| PREDICTED: LIM domain transcription factor LMO4.2-like, partial
[Taeniopygia guttata]
Length = 98
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 51/93 (54%), Gaps = 2/93 (2%)
Query: 43 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEY 102
LFG +G C+AC + IPA E+VMRA+ NVYHL+CF C C +R GDRF+ + + CE+
Sbjct: 1 LFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEH 60
Query: 103 DYEERQVFCVGDRFYLCDNKILCEYDYEERQVF 135
D G L N +L + Q+
Sbjct: 61 DRPT--ALINGHLNSLQSNPLLPDQKVNTPQLL 91
>gi|57613|emb|CAA37349.1| insulin gene enhancer binding protein [Rattus rattus]
Length = 313
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+ DL WH CLKC C+ L E T + + CKRDY+RL+G CA C+
Sbjct: 30 SPDLEWHAACLKCAECNQYLDE-SCTCFVRDGKTYCKRDYIRLYGIK--CAKCSIGFSKN 86
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE--ERQVFCVGD 114
+ VMRA++ VYH+ECF C C+ + GD F L ++ + C D++ ER GD
Sbjct: 87 DFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVVERASLGAGD 142
>gi|241688853|ref|XP_002411721.1| LIM domain containing protein [Ixodes scapularis]
gi|215504541|gb|EEC14035.1| LIM domain containing protein [Ixodes scapularis]
Length = 173
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 58/105 (55%), Gaps = 3/105 (2%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A DL WH CLKC C L E T + + CKRDY+RLFG C+ C +
Sbjct: 43 APDLEWHAACLKCADCQQFLDET-CTCFVRDGKTYCKRDYVRLFGAK--CSKCQQGFSRT 99
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
+ VMRA+ ++YHL+CF CQ C + GD F L D+ + C D++
Sbjct: 100 DFVMRARQHIYHLDCFRCQACARQLIPGDEFALRDDGLFCRADHD 144
>gi|26355418|dbj|BAC41153.1| unnamed protein product [Mus musculus]
Length = 349
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 63/118 (53%), Gaps = 5/118 (4%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+ DL WH CLKC C+ L E + L + CKRDY+RL+G CA C+
Sbjct: 33 SPDLEWHAACLKCAECNQYLDESCTCLVRDGK-TYCKRDYIRLYGIK--CAKCSIGFSKN 89
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE--ERQVFCVGDRF 116
+ VMRA++ VYH+ECF C C+ + GD F L ++ + C D++ ER GD
Sbjct: 90 DFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVVERASLGAGDPL 147
>gi|18858905|ref|NP_571037.1| insulin gene enhancer protein isl-1 [Danio rerio]
gi|1708559|sp|P53405.1|ISL1_DANRE RecName: Full=Insulin gene enhancer protein isl-1; Short=Islet-1
gi|497898|dbj|BAA04670.1| insulin gene enhancer binding protein [Danio rerio]
gi|38173895|gb|AAH60892.1| Isl1 protein [Danio rerio]
Length = 349
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 62/116 (53%), Gaps = 5/116 (4%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+ DL WH CLKC C+ L E T + + CKRDY+RL+G CA C
Sbjct: 33 SPDLEWHAACLKCAECNQYLDE-SCTCFVRDGKTYCKRDYIRLYGIK--CAKCNIGFSKN 89
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE--ERQVFCVGD 114
+ VMRA++ VYH+ECF C C+ + GD F L ++ + C D++ ER GD
Sbjct: 90 DFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVVERATMGAGD 145
>gi|348570106|ref|XP_003470838.1| PREDICTED: LIM/homeobox protein Lhx2 isoform 1 [Cavia porcellus]
Length = 404
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 58/106 (54%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 67 AVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF-SVQRCARCHLGISA 123
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA++ VYHL CF C CN GD F + D+ + C +E
Sbjct: 124 SEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFE 169
>gi|110748616|gb|ABG89861.1| Lhx6, partial [Astyanax mexicanus]
Length = 303
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 55/103 (53%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S+ Y K I CK DY FGT CA C + I A +
Sbjct: 127 NLIWHXRCLECSVCRTSLRQ-HSSCYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDW 183
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 184 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 226
>gi|348513701|ref|XP_003444380.1| PREDICTED: LIM/homeobox protein Lhx6-like [Oreochromis niloticus]
Length = 375
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 55/103 (53%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S+ Y K I CK DY FGT CA C + I A +
Sbjct: 114 NLIWHVRCLECSVCRTSLRQ-HSSCYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDW 170
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 171 VRRARGNAYHLACFACYSCKRQLSTGEEFGLVEEKVLCRIHYD 213
>gi|123299964|dbj|BAF45328.1| LIM homeobox protein 2 [Sus scrofa]
Length = 373
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 58/106 (54%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 68 AVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF-SVQRCARCHLGISA 124
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA++ VYHL CF C CN GD F + D+ + C +E
Sbjct: 125 SEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFE 170
>gi|426384765|ref|XP_004058922.1| PREDICTED: insulin gene enhancer protein ISL-1 [Gorilla gorilla
gorilla]
Length = 393
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 63/118 (53%), Gaps = 5/118 (4%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+ DL WH CLKC C+ L E T + + CKRDY+RL+G CA C+
Sbjct: 33 SPDLEWHAACLKCAECNQYLDE-SCTCFVRDGKTYCKRDYIRLYGIK--CAKCSIGFSKN 89
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE--ERQVFCVGDRF 116
+ VMRA++ VYH+ECF C C+ + GD F L ++ + C D++ ER GD
Sbjct: 90 DFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVVERASLGAGDPL 147
>gi|270009219|gb|EFA05667.1| lim1 [Tribolium castaneum]
Length = 511
Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 35/104 (33%), Positives = 56/104 (53%), Gaps = 6/104 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
L+ WH DC++C C L + + + N + C+ D+ R +GT C C + I +
Sbjct: 94 LERTWHADCVRCFDCHAPLTD---KCFSRENKLFCRNDFFRRYGTK--CGGCGQGISPSD 148
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFY-LCDNKILCEYDY 104
+V +A++ V+HL CF C C + G+ Y L DNK +C+ DY
Sbjct: 149 LVRKARDKVFHLNCFTCLVCRKQLSTGEELYVLDDNKFICKDDY 192
>gi|6980082|gb|AAF34717.1|AF226616_1 LIM-homeodomain transcription factor islet [Branchiostoma floridae]
Length = 419
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 60/105 (57%), Gaps = 3/105 (2%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A DL WH CLKC C+ L E T + + CKR Y+RLFGT CA C+
Sbjct: 31 APDLEWHAACLKCSDCNQYLDET-CTCFVREGKTYCKRCYVRLFGTK--CAKCSLGFTKN 87
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
+ VMRAKN +YH++CF C C+ + GD F L ++ + C+ D+E
Sbjct: 88 DFVMRAKNKIYHIDCFRCVACSRQLIPGDEFALREDGLFCKADHE 132
>gi|148224455|ref|NP_001087527.1| LIM/homeobox protein Lhx9 [Xenopus laevis]
gi|82198794|sp|Q68EY3.1|LHX9_XENLA RecName: Full=LIM/homeobox protein Lhx9; Short=LIM homeobox protein
9
gi|51258697|gb|AAH80067.1| Lhx9 protein [Xenopus laevis]
Length = 331
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 58/106 (54%), Gaps = 5/106 (4%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R + CA C I A
Sbjct: 88 AVDKQWHLRCLKC--CECKLTLESELTCFAKDGSIYCKEDYYRF--SVKRCARCHLGISA 143
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA+ +VYHL CF C CN GD+F + +N + C +E
Sbjct: 144 SEMVMRARESVYHLSCFTCTTCNKTLSTGDQFGMKENLVYCRIHFE 189
>gi|47223723|emb|CAF99332.1| unnamed protein product [Tetraodon nigroviridis]
Length = 381
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 55/103 (53%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S+ Y K I CK DY FGT CA C + I A +
Sbjct: 63 NLIWHVRCLECSVCRTSLRQ-HSSCYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDW 119
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 120 VRRARGNAYHLACFACYSCKRQLSTGEEFGLVEEKVLCRIHYD 162
>gi|410904301|ref|XP_003965630.1| PREDICTED: LIM/homeobox protein Lhx6-like [Takifugu rubripes]
Length = 373
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 55/103 (53%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S+ Y K I CK DY FGT CA C + I A +
Sbjct: 112 NLIWHVRCLECSVCRTSLRQ-HSSCYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDW 168
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 169 VRRARGNAYHLACFACYSCKRQLSTGEEFGLVEEKVLCRIHYD 211
>gi|348536385|ref|XP_003455677.1| PREDICTED: LIM/homeobox protein Lhx9-like isoform 3 [Oreochromis
niloticus]
Length = 320
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 58/106 (54%), Gaps = 5/106 (4%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R + CA C I A
Sbjct: 88 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRF--SVQRCARCHLGISA 143
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA+++VYHL CF C CN GD F + D+ + C +E
Sbjct: 144 SEMVMRARDSVYHLSCFTCTTCNKTLTTGDHFGMKDSLVYCRLHFE 189
>gi|348504222|ref|XP_003439661.1| PREDICTED: LIM homeobox transcription factor 1-beta-like
[Oreochromis niloticus]
Length = 456
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 59/106 (55%), Gaps = 6/106 (5%)
Query: 6 WHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMR 65
WH+ CL+C C L + T Y + CK DY +LF C+ C I E VMR
Sbjct: 52 WHQKCLQCAACQQPLTD---TCYFRDTKPYCKSDYQQLFAVE--CSNCLGKIAPTEFVMR 106
Query: 66 AKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE-ERQVF 110
A ++VYHL CF C C H+ C GD F L + ++LC+ DYE ER +F
Sbjct: 107 ALDSVYHLSCFCCCVCQHQLCKGDEFVLKEGQLLCKTDYERERTLF 152
>gi|1708562|sp|P53410.1|ISL2_CHICK RecName: Full=Insulin gene enhancer protein ISL-2; Short=Islet-2
gi|531181|gb|AAA62172.1| sequence encoding 37 predicted 5' amino acids has not been
determined, partial [Gallus gallus]
Length = 319
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 58/104 (55%), Gaps = 3/104 (2%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+ DL WH CLKC C L E T + + CKRDY RLFG CA C +
Sbjct: 6 SPDLEWHVACLKCAECGQPLDET-CTCFLRDGKAYCKRDYGRLFGIK--CAQCRAAFSSS 62
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 104
++VMRA+++VYHLECF C C + GD+F L + +LC D+
Sbjct: 63 DLVMRARDHVYHLECFRCAACGRQLLPGDQFCLRERDLLCRADH 106
>gi|224058880|ref|XP_002190501.1| PREDICTED: LIM homeobox transcription factor 1-alpha [Taeniopygia
guttata]
Length = 379
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 62/111 (55%), Gaps = 6/111 (5%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
D WHE C++C C L +T + + + CK DY +LF CA C + I E+
Sbjct: 50 DSLWHEQCVQCASCKEPLQ---TTCFYRDKKLYCKLDYEKLFAVK--CAGCLEPIAPSEL 104
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE-ERQVFCV 112
VMRA+ +VYHL CF C C R GD F L + ++LC+ DYE ER++ +
Sbjct: 105 VMRAQKSVYHLHCFCCCVCERRLQKGDEFVLKEGQLLCKGDYEKERELLSL 155
>gi|395541258|ref|XP_003772563.1| PREDICTED: LIM/homeobox protein Lhx8-like [Sarcophilus harrisii]
Length = 365
Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 57/103 (55%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
D++WH CL C C LG+ +T + K N I CK DYLR FGT C C + + + +
Sbjct: 102 DMYWHMQCLCCSVCQTSLGK-HATCFIKDNTIFCKIDYLRKFGTC--CCGCGRYVCSSDW 158
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V +A+ VYHL CF C C + GD F L + K+LC Y+
Sbjct: 159 VQKARGYVYHLACFVCFSCKRQLSTGDEFALVEEKVLCRIHYD 201
>gi|2285798|dbj|BAA21649.1| LIM-homeodomain protein [Mus musculus]
Length = 426
Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
DL WH CL C C LG ++ Y K I CK DY R +GT C+ C + I + +
Sbjct: 172 DLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYGT--RCSRCGRHIHSTDW 228
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RAK NVYHL CFAC C + G+ F L + K+LC ++
Sbjct: 229 VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHFD 271
>gi|354468096|ref|XP_003496503.1| PREDICTED: LIM/homeobox protein Lhx8-like [Cricetulus griseus]
Length = 344
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 55/102 (53%), Gaps = 3/102 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
DL WH CL C C LG ++ Y K I CK DY R +GT C+ C + I + +
Sbjct: 90 DLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYGT--RCSRCGRHIHSTDW 146
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 104
V RAK NVYHL CFAC C + G+ F L + K+LC +
Sbjct: 147 VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHF 188
>gi|391346181|ref|XP_003747357.1| PREDICTED: LIM homeobox transcription factor 1-beta.1-like
[Metaseiulus occidentalis]
Length = 434
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 55/101 (54%), Gaps = 5/101 (4%)
Query: 6 WHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMR 65
WHE CL C C L ++ Y + I CK DY RLFG CAACT I E+VM+
Sbjct: 79 WHESCLICSVCHQHLA---TSCYSRERRIFCKNDYDRLFGAK--CAACTGSIAPAELVMK 133
Query: 66 AKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
A + VYHL CF C C + GD + L + ++ C D+E+
Sbjct: 134 ALDQVYHLSCFLCCTCGRQLQRGDEYVLRNGRLYCRQDFEK 174
>gi|113195680|ref|NP_034843.2| LIM/homeobox protein Lhx8 [Mus musculus]
gi|341941136|sp|O35652.4|LHX8_MOUSE RecName: Full=LIM/homeobox protein Lhx8; Short=LIM homeobox protein
8; AltName: Full=L3; AltName: Full=LIM/homeobox protein
Lhx7; Short=LIM homeobox protein 7
gi|3172042|dbj|BAA28628.1| LIM-homeodomain protein [Mus musculus]
gi|74227158|dbj|BAE38359.1| unnamed protein product [Mus musculus]
gi|116138618|gb|AAI25284.1| LIM homeobox protein 8 [Mus musculus]
gi|116138795|gb|AAI25282.1| LIM homeobox protein 8 [Mus musculus]
gi|148679947|gb|EDL11894.1| LIM homeobox protein 8, isoform CRA_b [Mus musculus]
gi|219519204|gb|AAI44769.1| LIM homeobox protein 8 [Mus musculus]
gi|1587483|prf||2206477A LIM homeo domain transcription factor
Length = 367
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
DL WH CL C C LG ++ Y K I CK DY R +GT C+ C + I + +
Sbjct: 113 DLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYGT--RCSRCGRHIHSTDW 169
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RAK NVYHL CFAC C + G+ F L + K+LC ++
Sbjct: 170 VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHFD 212
>gi|34733869|gb|AAQ81867.1| islet 2 [Ambystoma mexicanum]
Length = 361
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 59/104 (56%), Gaps = 3/104 (2%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+ DL WH CLKC C L E T + + CKRDY+RLFG CA C +
Sbjct: 43 SPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDYIRLFGVK--CAQCGLGFSSS 99
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 104
++VMRA+ VYH+ECF C CN + GD F L ++++LC ++
Sbjct: 100 DLVMRARERVYHMECFRCSLCNRQLLPGDEFCLREHELLCRAEH 143
>gi|58866006|ref|NP_001012219.1| LIM/homeobox protein Lhx8 [Rattus norvegicus]
gi|58476609|gb|AAH90011.1| LIM homeobox 8 [Rattus norvegicus]
Length = 336
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
DL WH CL C C LG ++ Y K I CK DY R +GT C+ C + I + +
Sbjct: 82 DLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYGT--RCSRCGRHIHSTDW 138
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RAK NVYHL CFAC C + G+ F L + K+LC ++
Sbjct: 139 VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHFD 181
>gi|149026292|gb|EDL82535.1| rCG29002 [Rattus norvegicus]
Length = 367
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
DL WH CL C C LG ++ Y K I CK DY R +GT C+ C + I + +
Sbjct: 113 DLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYGT--RCSRCGRHIHSTDW 169
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RAK NVYHL CFAC C + G+ F L + K+LC ++
Sbjct: 170 VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHFD 212
>gi|45382271|ref|NP_990745.1| insulin gene enhancer protein ISL-1 [Gallus gallus]
gi|1708560|sp|P50211.1|ISL1_CHICK RecName: Full=Insulin gene enhancer protein ISL-1; Short=Islet-1
gi|531179|gb|AAA62171.1| amino acid feature: LIM1, bp 331 .. 483; amino acid feature: LIM2,
bp 517 .. 669; amino acid feature: homeodomain, bp 820
.. 999 [Gallus gallus]
Length = 349
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 62/118 (52%), Gaps = 5/118 (4%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+ DL WH CLKC C+ L E T + + CKRDY+RL+G CA C+
Sbjct: 33 SPDLEWHAACLKCAECNQYLDET-CTCFVRDGKTYCKRDYIRLYGIK--CAKCSIGFSKN 89
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE--ERQVFCVGDRF 116
+ VMRA+ VYH+ECF C C+ + GD F L ++ + C D++ ER GD
Sbjct: 90 DFVMRARAKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVVERASLGAGDPL 147
>gi|358339076|dbj|GAA47203.1| LIM/homeobox protein Lhx2 [Clonorchis sinensis]
Length = 761
Score = 78.6 bits (192), Expect = 9e-13, Method: Composition-based stats.
Identities = 36/103 (34%), Positives = 57/103 (55%), Gaps = 6/103 (5%)
Query: 5 FWHEDCLKCGCCDC-RLGEVGSTLYQKANLILCKRDYLRLFGTTG---YCAACTKVIPAF 60
WH +CL+C C+C + ++ + ++ I CK DY LFG CA C I
Sbjct: 133 LWHTECLRC--CECGKSLHAEASCFNRSGSIYCKEDYHTLFGFASRSISCAVCKIPIGPH 190
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 103
E+++R++++V+H CF C+QCN GDR+ L D + +C D
Sbjct: 191 ELIIRSQSSVFHYVCFNCRQCNRALQPGDRYALIDGQPVCHAD 233
>gi|46276325|gb|AAS86421.1| lhx9 [Oryzias latipes]
Length = 237
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 58/106 (54%), Gaps = 5/106 (4%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R + CA C I A
Sbjct: 2 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRF--SVQRCARCHLGISA 57
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA+++VYHL CF C CN GD F + D+ + C +E
Sbjct: 58 SEMVMRARDSVYHLSCFTCTTCNKTLTTGDHFGMKDSLVYCRLHFE 103
>gi|327262855|ref|XP_003216239.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Anolis
carolinensis]
Length = 349
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 62/118 (52%), Gaps = 5/118 (4%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+ DL WH CLKC C+ L E T + + CKRDY+RL+G CA C
Sbjct: 33 SPDLEWHAACLKCAECNQYLDET-CTCFVRDGKTYCKRDYIRLYGIK--CAKCNIGFSKN 89
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE--ERQVFCVGDRF 116
+ VMRA++ VYH+ECF C C+ + GD F L ++ + C D++ ER GD
Sbjct: 90 DFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVVERASLGPGDPL 147
>gi|312385468|gb|EFR29960.1| hypothetical protein AND_00755 [Anopheles darlingi]
Length = 339
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 58/101 (57%), Gaps = 3/101 (2%)
Query: 6 WHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMR 65
WH CL+C C C L S + + + CK DY++ F T+ CA C + I A + V R
Sbjct: 94 WHGSCLRCSVCYCPLERQASCFLRDGD-VYCKADYIKKFKTS--CAKCARSISATDWVRR 150
Query: 66 AKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
A+ V+HL CFAC C + G++F +C++++LC+ Y E
Sbjct: 151 AREYVFHLACFACDSCGRQLSTGEQFAICEDRVLCKTHYME 191
>gi|189238568|ref|XP_969484.2| PREDICTED: similar to LIM homeobox 1b [Tribolium castaneum]
Length = 497
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 35/104 (33%), Positives = 56/104 (53%), Gaps = 6/104 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
L+ WH DC++C C L + + + N + C+ D+ R +GT C C + I +
Sbjct: 170 LERTWHADCVRCFDCHAPLTD---KCFSRENKLFCRNDFFRRYGTK--CGGCGQGISPSD 224
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFY-LCDNKILCEYDY 104
+V +A++ V+HL CF C C + G+ Y L DNK +C+ DY
Sbjct: 225 LVRKARDKVFHLNCFTCLVCRKQLSTGEELYVLDDNKFICKDDY 268
>gi|345497659|ref|XP_001601152.2| PREDICTED: LIM/homeobox protein Lhx5-like [Nasonia vitripennis]
Length = 475
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 35/104 (33%), Positives = 57/104 (54%), Gaps = 6/104 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH DC++C CDCR + + + + C+ D+ + +GT C C++ I +
Sbjct: 21 LDRAWHADCVRC--CDCR-NPLQEKCFSREAKLFCRNDFFKRYGTK--CGGCSQGINPSD 75
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFY-LCDNKILCEYDY 104
+V +A++ V+HL CF C C + G+ Y L DN +C+ DY
Sbjct: 76 LVRKARDKVFHLNCFTCLVCRKQMSTGEELYVLDDNTFVCKEDY 119
>gi|326925124|ref|XP_003208771.1| PREDICTED: LIM domain transcription factor LMO4.2-like, partial
[Meleagris gallopavo]
Length = 171
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 43/61 (70%)
Query: 43 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEY 102
LFG +G C+AC + IPA E+VMRA+ NVYHL+CF C C +R GDRF+ + + CE+
Sbjct: 86 LFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEH 145
Query: 103 D 103
D
Sbjct: 146 D 146
>gi|328708276|ref|XP_001946004.2| PREDICTED: protein apterous-like [Acyrthosiphon pisum]
Length = 556
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 39/106 (36%), Positives = 56/106 (52%), Gaps = 2/106 (1%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D WH CL+C C L Y+ N I CK DY RL+G C C I
Sbjct: 200 AVDKRWHASCLQCSQCTRTLASEIKCFYRDGN-IYCKADYQRLYGIR-RCGRCHAGISPS 257
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
E+VMRA++ V+H+ CF+C C GD+F + D + C++ Y++
Sbjct: 258 ELVMRARDTVFHVPCFSCTVCLAVLTKGDQFGMRDGAVFCQHHYQQ 303
>gi|51571915|ref|NP_001004015.1| LIM/homeobox protein Lhx6 [Danio rerio]
gi|50953777|gb|AAT90495.1| Lhx6 [Danio rerio]
gi|190336767|gb|AAI62225.1| LIM homeobox 6 [Danio rerio]
Length = 375
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 55/103 (53%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S+ Y K I CK DY FGT CA C + I A +
Sbjct: 114 NLIWHVRCLECSVCRTSLRQ-HSSCYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDW 170
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 171 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 213
>gi|387538435|gb|AFJ79494.1| LIM-homeodomain transcription factor islet, partial [Branchiostoma
lanceolatum]
Length = 162
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 60/105 (57%), Gaps = 3/105 (2%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A DL WH CLKC C+ L E T + + CKR Y+RLFGT CA C+
Sbjct: 2 APDLEWHAACLKCSDCNQYLDET-CTYFVREGKTYCKRCYVRLFGTK--CAKCSLGFTKN 58
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
+ VMRA+N +YH++CF C C+ + GD F L ++ + C+ D+E
Sbjct: 59 DFVMRARNKIYHIDCFRCVACSRQLIPGDEFALREDGLFCKADHE 103
>gi|363740116|ref|XP_001234553.2| PREDICTED: LIM/homeobox protein Lhx5 [Gallus gallus]
Length = 402
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 58/104 (55%), Gaps = 6/104 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH C++C C C L E + + + CK D+ R FGT CA C++ I +
Sbjct: 21 LDRAWHIKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRRFGTK--CAGCSQGISPSD 75
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 104
+V +A+N V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 76 LVRKARNKVFHLNCFTCMVCNKQLSTGEELYIIDENKFVCKEDY 119
>gi|209737368|gb|ACI69553.1| Insulin gene enhancer protein isl-1 [Salmo salar]
Length = 356
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 62/116 (53%), Gaps = 5/116 (4%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+ DL WH CLKC C+ L E T + + CKRDY+RL+G CA C
Sbjct: 33 SPDLEWHAACLKCAECNQYLDE-SCTCFVRDGKTYCKRDYVRLYGIK--CAKCNIGFSKN 89
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE--ERQVFCVGD 114
+ VMRA++ VYH+ECF C C+ + GD F L ++ + C D++ ER GD
Sbjct: 90 DFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVVERATMGSGD 145
>gi|3319763|emb|CAA04012.1| Lhx7 protein [Mus musculus]
Length = 365
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
DL WH CL C C LG ++ Y K I CK DY R +GT C+ C + I + +
Sbjct: 112 DLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYGTR--CSRCGRHIHSTDW 168
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RAK NVYHL CFAC C + G+ F L + K+LC ++
Sbjct: 169 VRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHFD 211
>gi|348555669|ref|XP_003463646.1| PREDICTED: insulin gene enhancer protein ISL-2-like [Cavia
porcellus]
Length = 371
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 60/104 (57%), Gaps = 3/104 (2%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+ DL WH CLKC C L E T + + CKRDY RLFG CA C +
Sbjct: 43 SPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDYARLFGIK--CAKCQVGFSSS 99
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 104
++VMRA+++V+H+ECF C C+ + GD F L ++++LC D+
Sbjct: 100 DLVMRARDSVFHVECFRCAVCSRQLLPGDEFSLREHELLCRADH 143
>gi|156552953|ref|XP_001603153.1| PREDICTED: insulin gene enhancer protein ISL-1-like [Nasonia
vitripennis]
Length = 458
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 59/115 (51%), Gaps = 5/115 (4%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A DL WH CLKC C L E T + + CK DY+RLFGT C C +
Sbjct: 63 APDLEWHAACLKCAACQQFLDES-CTCFVRDGKTYCKDDYVRLFGTK--CDKCRQSFNKN 119
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE--ERQVFCVG 113
+ VMRAK +YHLECF C C + GD F L + + C +D++ E + C G
Sbjct: 120 DFVMRAKTKIYHLECFRCSACMRQLVPGDEFALRSDGLFCRHDHDALEGEKICGG 174
>gi|158296021|ref|XP_316578.4| AGAP006540-PA [Anopheles gambiae str. PEST]
gi|157016312|gb|EAA11207.4| AGAP006540-PA [Anopheles gambiae str. PEST]
Length = 334
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 57/101 (56%), Gaps = 3/101 (2%)
Query: 6 WHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMR 65
WH CL+C C L S + + I CK DY + FGT CA C++ I A + V R
Sbjct: 43 WHSACLRCCICHTPLDHQPS-CFLRERQIYCKTDYTKRFGTK--CARCSRTISATDWVRR 99
Query: 66 AKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
A++ ++HL CFAC C + G++F L D+K+LC+ Y E
Sbjct: 100 ARDLIFHLACFACDSCGRQLSTGEQFALVDDKVLCKTHYSE 140
>gi|158254920|dbj|BAF83431.1| unnamed protein product [Homo sapiens]
Length = 349
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 63/118 (53%), Gaps = 5/118 (4%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+ DL WH CLKC C+ L E T + + CKRDY+RL+G CA C+
Sbjct: 33 SPDLEWHAACLKCAECNQCLDE-SCTCFVRDGKTYCKRDYIRLYGIK--CAKCSIGFSKN 89
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE--ERQVFCVGDRF 116
+ VMRA++ VYH+ECF C C+ + GD F L ++ + C D++ ER GD
Sbjct: 90 DFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVVERASLGAGDPL 147
>gi|259013283|ref|NP_001158443.1| lim homeobox 2/9 protein [Saccoglossus kowalevskii]
gi|197320559|gb|ACH68441.1| lim homeobox 2/9 protein [Saccoglossus kowalevskii]
Length = 402
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 58/107 (54%), Gaps = 6/107 (5%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTL--YQKANLILCKRDYLRLFGTTGYCAACTKVIP 58
A+D WH CLKC C+C+L + S L + K I CK DY R F + CA C I
Sbjct: 74 AVDKQWHMQCLKC--CECKL-RLDSELTCFAKDGSIYCKDDYYRRF-SVKRCARCHLGIS 129
Query: 59 AFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
A EMVMRA++ VYHL CF C CN GD F + D + C YE
Sbjct: 130 ASEMVMRARDLVYHLSCFTCATCNKALATGDHFGMKDAMVYCRSHYE 176
>gi|432092293|gb|ELK24915.1| LIM/homeobox protein Lhx9, partial [Myotis davidii]
Length = 420
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 57/107 (53%), Gaps = 4/107 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 27 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 83
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EMVMRA++ VYHL CF C C+ GD F + D + C +E
Sbjct: 84 SEMVMRARDAVYHLSCFTCSTCSKTLATGDHFGMKDGLVYCRAHFES 130
>gi|154147696|ref|NP_001093698.1| LIM homeobox 1 [Xenopus (Silurana) tropicalis]
gi|138519843|gb|AAI35732.1| lhx1 protein [Xenopus (Silurana) tropicalis]
Length = 409
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 57/104 (54%), Gaps = 6/104 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH C++C C C L E + + + CK D+ R FGT CA C + I +
Sbjct: 20 LDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRRFGTK--CAGCAQGISPSD 74
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 104
+V RA++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 75 LVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
>gi|348539206|ref|XP_003457080.1| PREDICTED: insulin gene enhancer protein isl-1-like isoform 2
[Oreochromis niloticus]
Length = 357
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 61/116 (52%), Gaps = 5/116 (4%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+ DL WH CLKC C L E T + + CKRDY+RL+G CA C
Sbjct: 33 SPDLEWHAACLKCAECSQYLDE-SCTCFVRDGKTYCKRDYIRLYGIK--CAKCNIGFSKN 89
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE--ERQVFCVGD 114
+ VMRA++ VYH+ECF C C+ + GD F L ++ + C D++ ER GD
Sbjct: 90 DFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVVERASLGPGD 145
>gi|351696280|gb|EHA99198.1| LIM/homeobox protein Lhx8 [Heterocephalus glaber]
Length = 348
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 54/100 (54%), Gaps = 3/100 (3%)
Query: 6 WHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMR 65
WH CL C C LG ++ Y K I CK DY R +GT C+ C + I + + V R
Sbjct: 87 WHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLDYFRRYGT--RCSRCGRHIHSTDWVRR 143
Query: 66 AKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
AK NVYHL CFAC C + G+ F L + K+LC Y+
Sbjct: 144 AKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYD 183
>gi|348539204|ref|XP_003457079.1| PREDICTED: insulin gene enhancer protein isl-1-like isoform 1
[Oreochromis niloticus]
Length = 349
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 61/116 (52%), Gaps = 5/116 (4%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+ DL WH CLKC C L E T + + CKRDY+RL+G CA C
Sbjct: 33 SPDLEWHAACLKCAECSQYLDE-SCTCFVRDGKTYCKRDYIRLYGIK--CAKCNIGFSKN 89
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE--ERQVFCVGD 114
+ VMRA++ VYH+ECF C C+ + GD F L ++ + C D++ ER GD
Sbjct: 90 DFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVVERASLGPGD 145
>gi|345329744|ref|XP_001512364.2| PREDICTED: LIM/homeobox protein Lhx6 [Ornithorhynchus anatinus]
Length = 364
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 55/103 (53%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S+ Y K I CK DY FGT CA C + I A +
Sbjct: 88 NLIWHVRCLECSVCRTSLRQQ-SSCYIKNKEIFCKVDYFSRFGTK--CARCGRQIYASDW 144
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 145 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 187
>gi|348535176|ref|XP_003455077.1| PREDICTED: LIM/homeobox protein Lhx2-like [Oreochromis niloticus]
Length = 417
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 58/106 (54%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 89 AVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF-SVQRCARCHLGISA 145
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA++ VYHL CF C C+ GD F + D+ + C +E
Sbjct: 146 SEMVMRARDLVYHLNCFTCTTCSKMLTTGDHFGMKDSLVYCRLHFE 191
>gi|324511084|gb|ADY44626.1| LIM/homeobox protein Awh [Ascaris suum]
Length = 384
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 60/102 (58%), Gaps = 3/102 (2%)
Query: 5 FWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVM 64
FWH +CL+C C L + S + K ++I CK Y R FGT C++C ++I + V
Sbjct: 138 FWHTECLRCSQCSVHLDQYPS-CFIKEDIIYCKPCYNRQFGT--KCSSCRRLIQPTDWVR 194
Query: 65 RAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
RA++ VYHL CFAC QC + G+ F L D ++LC+ Y E
Sbjct: 195 RARSFVYHLACFACDQCKRQLSTGEEFALQDCRLLCKQHYVE 236
>gi|260829945|ref|XP_002609922.1| LIM class homeodomain transcription factor, islet subclass
[Branchiostoma floridae]
gi|229295284|gb|EEN65932.1| LIM class homeodomain transcription factor, islet subclass
[Branchiostoma floridae]
Length = 430
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 60/105 (57%), Gaps = 3/105 (2%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A DL WH CLKC C+ L E T + + CKR Y+RLFGT CA C+
Sbjct: 42 APDLEWHAACLKCSDCNQYLDET-CTCFVREGKTYCKRCYVRLFGTK--CAKCSLGFTKN 98
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
+ VMRA+N +YH++CF C C+ + GD F L ++ + C+ D+E
Sbjct: 99 DFVMRARNKIYHIDCFRCVACSRQLIPGDEFALREDGLFCKADHE 143
>gi|13516919|dbj|BAB40339.1| islet [Halocynthia roretzi]
Length = 432
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 64/121 (52%), Gaps = 4/121 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A +L WH CLKC C L E T + + CK+DY+ LFGT C C
Sbjct: 41 APNLEWHAGCLKCADCGLHLDE-SRTCFVRDGKTYCKQDYIMLFGTK--CNKCGLGFTKN 97
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFC-VGDRFYLC 119
+ VMRA+N +YH+ECF C C+ + GD F L ++ + C+ D++ + C VGD L
Sbjct: 98 DFVMRARNKIYHIECFKCVACSKQLIPGDEFALREDGLFCKADHDVVERNCLVGDVLSLS 157
Query: 120 D 120
+
Sbjct: 158 N 158
>gi|148225925|ref|NP_001084128.1| LIM/homeobox protein Lhx1 [Xenopus laevis]
gi|267419|sp|P29674.1|LHX1_XENLA RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein
1; AltName: Full=Homeobox protein Lim-1; Short=Xlim1;
Short=x-Lhx1; Short=xLIM-1
gi|64830|emb|CAA45353.1| homeobox protein [Xenopus laevis]
gi|213623130|gb|AAI69338.1| Homeobox protein [Xenopus laevis]
gi|213623134|gb|AAI69340.1| Homeobox protein [Xenopus laevis]
Length = 403
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 57/104 (54%), Gaps = 6/104 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH C++C C C L E + + + CK D+ R FGT CA C + I +
Sbjct: 20 LDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRRFGTK--CAGCAQGISPSD 74
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 104
+V RA++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 75 LVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
>gi|332229915|ref|XP_003264132.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Nomascus
leucogenys]
Length = 365
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 105 NLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDW 161
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 162 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 204
>gi|390356846|ref|XP_785118.3| PREDICTED: LIM/homeobox protein Awh-like [Strongylocentrotus
purpuratus]
Length = 335
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 58/103 (56%), Gaps = 3/103 (2%)
Query: 4 LFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMV 63
L WH CL+C CD L S ++ N + C++ Y R FGT CA C + I A + V
Sbjct: 56 LSWHSSCLRCLECDESLSSHQSCYFKDQN-VFCRKCYSREFGTK--CARCLRNIDASDWV 112
Query: 64 MRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
RA+ N+YHL CFAC C + G+ F + +N++LC+ Y E
Sbjct: 113 RRARENIYHLACFACDNCKRQLSTGEEFAMIENRVLCKSHYLE 155
>gi|444724034|gb|ELW64656.1| LIM/homeobox protein Lhx6 [Tupaia chinensis]
Length = 336
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 65 NLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDW 121
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 122 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 164
>gi|332229917|ref|XP_003264133.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Nomascus
leucogenys]
Length = 376
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 116 NLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDW 172
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 173 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 215
>gi|308097158|gb|ADO14133.1| ISL1 transcription factor [Notophthalmus viridescens]
Length = 349
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 62/118 (52%), Gaps = 5/118 (4%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+ DL WH CLKC C+ L E T + + CKRDY+RL+G CA C
Sbjct: 33 SPDLEWHAACLKCAECNQYLDET-CTCFVRDGKTYCKRDYIRLYGIK--CAKCNIGFSKN 89
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE--ERQVFCVGDRF 116
+ VMRA++ VYH+ECF+C C+ + GD F L ++ + C D++ ER D
Sbjct: 90 DFVMRARSKVYHIECFSCVACSRQLIPGDEFALREDGLFCRADHDVVERASLGAADPL 147
>gi|410929509|ref|XP_003978142.1| PREDICTED: LIM/homeobox protein Lhx2-like [Takifugu rubripes]
Length = 417
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 58/106 (54%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 89 AVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF-SVQRCARCHLGISA 145
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA++ VYHL CF C C+ GD F + D+ + C +E
Sbjct: 146 SEMVMRARDLVYHLNCFTCTTCSKMLTTGDHFGMKDSLVYCRLHFE 191
>gi|426362927|ref|XP_004048601.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Gorilla gorilla
gorilla]
Length = 384
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 109 NLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDW 165
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 166 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 208
>gi|426362929|ref|XP_004048602.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Gorilla gorilla
gorilla]
Length = 369
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 109 NLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDW 165
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 166 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 208
>gi|410978995|ref|XP_003995872.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Felis catus]
Length = 363
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 87 NLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDW 143
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 144 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 186
>gi|158296017|ref|XP_001237835.2| AGAP006537-PA [Anopheles gambiae str. PEST]
gi|157016310|gb|EAU76621.2| AGAP006537-PA [Anopheles gambiae str. PEST]
Length = 271
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 59/101 (58%), Gaps = 3/101 (2%)
Query: 6 WHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMR 65
WH CL+C C C L E + Y + + CK DY++ F T+ CA C + I A + V R
Sbjct: 28 WHGSCLRCTVCFCPL-ERQVSCYLRDGDMYCKSDYIKKFKTS--CAKCARSISATDWVRR 84
Query: 66 AKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
A+ V+HL CFAC C + G++F +C++++LC+ Y E
Sbjct: 85 AREYVFHLACFACDSCGRQLSTGEQFAICEDRVLCKTHYME 125
>gi|321464128|gb|EFX75138.1| hypothetical protein DAPPUDRAFT_323670 [Daphnia pulex]
Length = 278
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 59/105 (56%), Gaps = 6/105 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH +CLKC C L + + + CK D+ R FGT CA C + I +
Sbjct: 57 LDRPWHTECLKCMDCGTHLVD---KCFVRGGSTYCKEDFFRRFGTK--CACCDQGIAPSQ 111
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYE 105
+V RA+++VYHLECF C C + GD FYL D K++C+ DYE
Sbjct: 112 IVRRAQHHVYHLECFQCVLCGRQLDTGDEFYLMEDRKLVCKADYE 156
>gi|5738960|dbj|BAA83423.1| LIM-homeodomain (LHX) protein 6.1b [Homo sapiens]
Length = 348
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 87 NLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDW 143
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 144 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 186
>gi|402896489|ref|XP_003911330.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx6 [Papio
anubis]
Length = 390
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 116 NLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDW 172
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 173 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 215
>gi|332229919|ref|XP_003264134.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 3 [Nomascus
leucogenys]
Length = 391
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 116 NLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDW 172
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 173 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 215
>gi|344271983|ref|XP_003407816.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Loxodonta africana]
Length = 377
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 116 NLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDW 172
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 173 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 215
>gi|224090443|ref|XP_002197098.1| PREDICTED: insulin gene enhancer protein ISL-1 [Taeniopygia
guttata]
Length = 349
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 62/118 (52%), Gaps = 5/118 (4%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+ DL WH CLKC C+ L E T + + CKRDY+RL+G CA C+
Sbjct: 33 SPDLEWHAACLKCAECNQYLDET-CTCFVRDGKTYCKRDYIRLYGIK--CAKCSIGFSKN 89
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE--ERQVFCVGDRF 116
+ VMRA+ VYH+ECF C C+ + GD F L ++ + C D++ ER GD
Sbjct: 90 DFVMRARAKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVVERASLGGGDPL 147
>gi|351694308|gb|EHA97226.1| LIM/homeobox protein Lhx6 [Heterocephalus glaber]
Length = 294
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 65 NLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDW 121
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 122 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 164
>gi|410978997|ref|XP_003995873.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Felis catus]
Length = 404
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 105 NLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDW 161
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 162 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 204
>gi|390458309|ref|XP_003732088.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Callithrix jacchus]
Length = 348
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 87 NLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDW 143
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 144 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 186
>gi|355567465|gb|EHH23806.1| hypothetical protein EGK_07356 [Macaca mulatta]
Length = 363
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 87 NLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDW 143
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 144 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 186
>gi|74355622|gb|AAI03937.1| LIM homeobox 6 [Homo sapiens]
gi|119607921|gb|EAW87515.1| LIM homeobox 6, isoform CRA_a [Homo sapiens]
Length = 348
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 87 NLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDW 143
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 144 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 186
>gi|390458307|ref|XP_002806566.2| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Callithrix jacchus]
Length = 363
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 87 NLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDW 143
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 144 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 186
>gi|348570158|ref|XP_003470864.1| PREDICTED: LIM/homeobox protein Lhx6-like [Cavia porcellus]
Length = 363
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 87 NLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDW 143
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 144 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 186
>gi|297270222|ref|XP_001089041.2| PREDICTED: LIM/homeobox protein Lhx6 isoform 3 [Macaca mulatta]
Length = 392
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 116 NLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDW 172
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 173 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 215
>gi|300797193|ref|NP_001179777.1| LIM/homeobox protein Lhx6 [Bos taurus]
gi|296482368|tpg|DAA24483.1| TPA: LIM homeobox 6 isoform 1 [Bos taurus]
Length = 392
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 116 NLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDW 172
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 173 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 215
>gi|134284361|ref|NP_954629.2| LIM/homeobox protein Lhx6 isoform 2 [Homo sapiens]
gi|297685272|ref|XP_002820219.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Pongo abelii]
Length = 377
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 116 NLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDW 172
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 173 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 215
>gi|395824119|ref|XP_003785318.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 3 [Otolemur garnettii]
Length = 366
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 105 NLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDW 161
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 162 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 204
>gi|395824115|ref|XP_003785316.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Otolemur garnettii]
Length = 392
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 116 NLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDW 172
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 173 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 215
>gi|167773589|gb|ABZ92229.1| LIM homeobox 6 [synthetic construct]
Length = 363
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 87 NLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDW 143
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 144 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 186
>gi|344271985|ref|XP_003407817.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 3 [Loxodonta africana]
Length = 366
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 105 NLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDW 161
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 162 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 204
>gi|344271981|ref|XP_003407815.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Loxodonta africana]
Length = 392
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 116 NLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDW 172
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 173 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 215
>gi|297270224|ref|XP_001088818.2| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Macaca mulatta]
Length = 377
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 116 NLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDW 172
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 173 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 215
>gi|5738958|dbj|BAA83422.1| LIM-homeodomain (LHX) protein 6.1a [Homo sapiens]
Length = 363
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 87 NLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDW 143
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 144 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 186
>gi|403266045|ref|XP_003925208.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Saimiri boliviensis
boliviensis]
Length = 366
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 105 NLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDW 161
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 162 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 204
>gi|297685274|ref|XP_002820220.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 3 [Pongo abelii]
Length = 366
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 105 NLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDW 161
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 162 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 204
>gi|296482369|tpg|DAA24484.1| TPA: LIM homeobox 6 isoform 2 [Bos taurus]
Length = 377
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 116 NLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDW 172
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 173 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 215
>gi|134284359|ref|NP_055183.2| LIM/homeobox protein Lhx6 isoform 1 [Homo sapiens]
gi|297685270|ref|XP_002820218.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Pongo abelii]
gi|221042862|dbj|BAH13108.1| unnamed protein product [Homo sapiens]
Length = 392
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 116 NLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDW 172
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 173 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 215
>gi|410043123|ref|XP_003312314.2| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Pan troglodytes]
Length = 348
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 87 NLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDW 143
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 144 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 186
>gi|395824117|ref|XP_003785317.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Otolemur garnettii]
Length = 377
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 116 NLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDW 172
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 173 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 215
>gi|334191691|ref|NP_001229263.1| LIM/homeobox protein Lhx6 isoform 4 [Homo sapiens]
gi|90185239|sp|Q9UPM6.2|LHX6_HUMAN RecName: Full=LIM/homeobox protein Lhx6; Short=LIM homeobox protein
6; AltName: Full=LIM/homeobox protein Lhx6.1
gi|7018428|emb|CAB66505.1| hypothetical protein [Homo sapiens]
gi|74353529|gb|AAI03938.1| LIM homeobox 6 [Homo sapiens]
gi|117646920|emb|CAL37575.1| hypothetical protein [synthetic construct]
gi|119607922|gb|EAW87516.1| LIM homeobox 6, isoform CRA_b [Homo sapiens]
gi|119607923|gb|EAW87517.1| LIM homeobox 6, isoform CRA_b [Homo sapiens]
gi|158260677|dbj|BAF82516.1| unnamed protein product [Homo sapiens]
gi|189054037|dbj|BAG36544.1| unnamed protein product [Homo sapiens]
Length = 363
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 87 NLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDW 143
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 144 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 186
>gi|403266043|ref|XP_003925207.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Saimiri boliviensis
boliviensis]
Length = 381
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 105 NLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDW 161
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 162 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 204
>gi|390458313|ref|XP_003732090.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 4 [Callithrix jacchus]
Length = 366
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 105 NLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDW 161
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 162 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 204
>gi|397526998|ref|XP_003833397.1| PREDICTED: LIM/homeobox protein Lhx6 [Pan paniscus]
Length = 377
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 101 NLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDW 157
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 158 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 200
>gi|390458311|ref|XP_003732089.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 3 [Callithrix jacchus]
Length = 381
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 105 NLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDW 161
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 162 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 204
>gi|345806127|ref|XP_548475.3| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Canis lupus
familiaris]
Length = 363
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 87 NLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDW 143
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 144 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 186
>gi|301760410|ref|XP_002916006.1| PREDICTED: LIM/homeobox protein Lhx6-like [Ailuropoda melanoleuca]
Length = 390
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 114 NLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDW 170
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 171 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 213
>gi|297270226|ref|XP_002800034.1| PREDICTED: LIM/homeobox protein Lhx6 [Macaca mulatta]
Length = 366
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 105 NLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDW 161
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 162 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 204
>gi|334191689|ref|NP_001229262.1| LIM/homeobox protein Lhx6 isoform 3 [Homo sapiens]
gi|221041678|dbj|BAH12516.1| unnamed protein product [Homo sapiens]
Length = 366
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 105 NLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDW 161
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 162 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 204
>gi|547852|sp|P36198.1|LHX2_RAT RecName: Full=LIM/homeobox protein Lhx2; Short=Homeobox protein
LH-2; Short=LIM homeobox protein 2
Length = 426
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 57/106 (53%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I
Sbjct: 67 AVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF-SVQRCARCHLGISE 123
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA++ VYHL CF C CN GD F + D+ + C +E
Sbjct: 124 SEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFE 169
>gi|326924822|ref|XP_003208624.1| PREDICTED: LOW QUALITY PROTEIN: LIM homeobox transcription factor
1-alpha-like [Meleagris gallopavo]
Length = 367
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 62/111 (55%), Gaps = 6/111 (5%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
D WHE C++C C L +T + + + CK DY +LF CA C + I E+
Sbjct: 39 DSLWHERCVQCTSCKEPLH---TTCFYRDKKLYCKLDYEKLFAVK--CAGCLESIAPSEL 93
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE-ERQVFCV 112
VMRA+ +VYHL CF C C R GD F L + ++LC+ DYE ER++ +
Sbjct: 94 VMRAQQSVYHLHCFCCCVCERRLQKGDEFVLKEGQLLCKGDYEKERELLSL 144
>gi|383792181|ref|NP_001244317.1| LIM homeobox transcription factor 1-alpha [Gallus gallus]
Length = 380
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 62/111 (55%), Gaps = 6/111 (5%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
D WHE C++C C L +T + + + CK DY +LF CA C + I E+
Sbjct: 52 DSLWHERCVQCTSCKEPLH---TTCFYRDKKLYCKLDYEKLFAVK--CAGCLESIAPSEL 106
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE-ERQVFCV 112
VMRA+ +VYHL CF C C R GD F L + ++LC+ DYE ER++ +
Sbjct: 107 VMRAQQSVYHLHCFCCCVCERRLQKGDEFVLKEGQLLCKGDYEKERELLSL 157
>gi|281337700|gb|EFB13284.1| hypothetical protein PANDA_004030 [Ailuropoda melanoleuca]
Length = 360
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 89 NLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDW 145
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 146 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 188
>gi|440906624|gb|ELR56864.1| LIM/homeobox protein Lhx6, partial [Bos grunniens mutus]
Length = 360
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 89 NLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDW 145
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 146 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 188
>gi|332832786|ref|XP_001135172.2| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Pan troglodytes]
Length = 392
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 116 NLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDW 172
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 173 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 215
>gi|345806125|ref|XP_003435390.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Canis lupus
familiaris]
Length = 392
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 116 NLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDW 172
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 173 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 215
>gi|410043125|ref|XP_003951564.1| PREDICTED: LIM/homeobox protein Lhx6 [Pan troglodytes]
Length = 366
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 105 NLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDW 161
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 162 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 204
>gi|334311482|ref|XP_001364897.2| PREDICTED: LIM/homeobox protein Lhx6 [Monodelphis domestica]
Length = 391
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 115 NLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIFASDW 171
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 172 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 214
>gi|321477982|gb|EFX88940.1| hypothetical protein DAPPUDRAFT_4176 [Daphnia pulex]
Length = 199
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 6 WHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMR 65
WH CL+C C L S + +A I C+ DY R FG CA C++ I A + V R
Sbjct: 21 WHSTCLRCSVCRTALDNQPS-CFVRAGAIYCRADYTRTFG--AKCARCSRSISAADWVRR 77
Query: 66 AKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 104
A+ +VYHL CFAC C + G+ F L + ++LC+ Y
Sbjct: 78 AREHVYHLACFACDACRRQLSTGEEFALHEGRVLCKTHY 116
>gi|301623765|ref|XP_002941184.1| PREDICTED: LIM/homeobox protein Lhx6-like [Xenopus (Silurana)
tropicalis]
Length = 389
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 113 NLIWHVRCLECSVCRTSLRQHNS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDW 169
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 170 VRRARGNAYHLACFACYSCKRQLSTGEEFGLVEEKVLCRIHYD 212
>gi|432876050|ref|XP_004072952.1| PREDICTED: LIM/homeobox protein Lhx2-like [Oryzias latipes]
Length = 380
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 57/106 (53%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 89 AVDKQWHMRCLKC--CECKLNLESELTCFSKDGSIYCKEDYYRRF-SVQRCARCHLGISA 145
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA++ VYHL CF C C GD F + D+ + C +E
Sbjct: 146 SEMVMRARDLVYHLNCFTCTTCGKMLTTGDHFGMKDSLVYCRLHFE 191
>gi|395505631|ref|XP_003757143.1| PREDICTED: LIM/homeobox protein Lhx6 [Sarcophilus harrisii]
Length = 363
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 87 NLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIFASDW 143
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 144 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 186
>gi|350579610|ref|XP_003480648.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx6-like [Sus
scrofa]
Length = 332
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 116 NLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDW 172
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 173 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 215
>gi|443701941|gb|ELU00131.1| hypothetical protein CAPTEDRAFT_168913 [Capitella teleta]
Length = 481
Score = 77.0 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 35/104 (33%), Positives = 55/104 (52%), Gaps = 6/104 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH C+ C C L + + + + C++D+ R +GT C C + I +
Sbjct: 22 LDRAWHAQCVLCVDCQAPLTD---KCFSRDGRLYCRQDFYRRYGTK--CGGCAEGISPND 76
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 104
+V RA+N V+HL+CF C C + G+ Y+ D NK +C+ DY
Sbjct: 77 LVRRARNKVFHLKCFTCMVCRKQLSTGEELYVLDENKFICKSDY 120
>gi|148676721|gb|EDL08668.1| LIM homeobox protein 6, isoform CRA_b [Mus musculus]
Length = 380
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 119 NLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIYCKMDYFSRFGTK--CARCGRQIYASDW 175
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 176 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 218
>gi|432113616|gb|ELK35898.1| LIM/homeobox protein Lhx1 [Myotis davidii]
Length = 272
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 57/104 (54%), Gaps = 6/104 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH C++C C C L E + + + CK D+ R FGT CA C + I +
Sbjct: 20 LDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRCFGTK--CAGCAQGISPSD 74
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 104
+V RA++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 75 LVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
>gi|195353746|ref|XP_002043364.1| GM16501 [Drosophila sechellia]
gi|194127487|gb|EDW49530.1| GM16501 [Drosophila sechellia]
Length = 535
Score = 77.0 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 40/104 (38%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A++ WH CL+C C L E S+ Y + I CK DY FGT C+ C I +
Sbjct: 229 AVEKRWHASCLQCYACRQPL-ERESSCYSRDGNIYCKNDYYSFFGTR-RCSRCLASISSN 286
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 104
E+VMRA+N V+H+ CF C C+ GD++ + D I C Y
Sbjct: 287 ELVMRARNLVFHVNCFCCTVCHTPLTKGDQYGIIDALIYCRTHY 330
>gi|194390004|dbj|BAG60518.1| unnamed protein product [Homo sapiens]
Length = 301
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 57/104 (54%), Gaps = 6/104 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH C++C C C L E + + + CK D+ R FGT CA C + I +
Sbjct: 20 LDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRCFGTK--CAGCAQGISPSD 74
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 104
+V RA++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 75 LVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
>gi|431890885|gb|ELK01764.1| LIM/homeobox protein Lhx1 [Pteropus alecto]
Length = 406
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 57/104 (54%), Gaps = 6/104 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH C++C C C L E + + + CK D+ R FGT CA C + I +
Sbjct: 20 LDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRCFGTK--CAGCAQGISPSD 74
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 104
+V RA++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 75 LVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
>gi|268567057|ref|XP_002639879.1| C. briggsae CBR-LIN-11 protein [Caenorhabditis briggsae]
Length = 411
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 6/132 (4%)
Query: 6 WHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMR 65
WH+ CL+C CDCR + T + K LILCK DY R +G CA C + ++V R
Sbjct: 95 WHQSCLRC--CDCR-APMSMTCFSKDGLILCKTDYSRRYG--HRCAGCDGKLEKEDLVRR 149
Query: 66 AKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFCVGDRFY-LCDNKIL 124
A++ V+H+ CF C C GD+ Y+ + +C+ D++ + N
Sbjct: 150 ARDKVFHIRCFQCSVCQRLLDTGDQLYIMEGNRMCQNDFQTATKTSTPTSMHRPISNGSE 209
Query: 125 CEYDYEERQVFA 136
C D EE V A
Sbjct: 210 CNSDIEEDNVDA 221
>gi|30410785|ref|NP_005559.2| LIM/homeobox protein Lhx1 [Homo sapiens]
gi|60416412|sp|P48742.2|LHX1_HUMAN RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein
1; AltName: Full=Homeobox protein Lim-1; Short=hLim-1
gi|75517203|gb|AAI01675.1| LIM homeobox 1 [Homo sapiens]
gi|85565997|gb|AAI11937.1| LIM homeobox 1 [Homo sapiens]
gi|119577978|gb|EAW57574.1| LIM homeobox 1 [Homo sapiens]
gi|167773161|gb|ABZ92015.1| LIM homeobox 1 [synthetic construct]
gi|208966670|dbj|BAG73349.1| LIM homeobox 1 [synthetic construct]
Length = 406
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 57/104 (54%), Gaps = 6/104 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH C++C C C L E + + + CK D+ R FGT CA C + I +
Sbjct: 20 LDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRCFGTK--CAGCAQGISPSD 74
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 104
+V RA++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 75 LVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
>gi|296201935|ref|XP_002748333.1| PREDICTED: LIM/homeobox protein Lhx1 [Callithrix jacchus]
Length = 406
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 57/104 (54%), Gaps = 6/104 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH C++C C C L E + + + CK D+ R FGT CA C + I +
Sbjct: 20 LDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRCFGTK--CAGCAQGISPSD 74
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 104
+V RA++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 75 LVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
>gi|301776020|ref|XP_002923422.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx1-like
[Ailuropoda melanoleuca]
Length = 405
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 57/104 (54%), Gaps = 6/104 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH C++C C C L E + + + CK D+ R FGT CA C + I +
Sbjct: 20 LDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRCFGTK--CAGCAQGISPSD 74
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 104
+V RA++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 75 LVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
>gi|55846812|gb|AAV67410.1| LIM homeobox protein 1 [Macaca fascicularis]
Length = 403
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 57/104 (54%), Gaps = 6/104 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH C++C C C L E + + + CK D+ R FGT CA C + I +
Sbjct: 17 LDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRCFGTK--CAGCAQGISPSD 71
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 104
+V RA++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 72 LVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 115
>gi|44194074|gb|AAS46773.1| insulin enhancer binding protein [Rattus norvegicus]
Length = 326
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 62/116 (53%), Gaps = 5/116 (4%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+ DL WH CLKC C+ L E T + + KRDY+RL+G CA C+
Sbjct: 33 SPDLEWHAACLKCAECNQYLDE-SCTCFVRDGKTYSKRDYIRLYGIK--CAKCSIGFSKN 89
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE--ERQVFCVGD 114
+ VMRA++ VYH+ECF C C+ + GD F L ++ + C D++ ER GD
Sbjct: 90 DFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVVERASLGAGD 145
>gi|76573889|ref|NP_001029088.1| LIM/homeobox protein Lhx1 [Pan troglodytes]
gi|297700651|ref|XP_002827352.1| PREDICTED: LIM/homeobox protein Lhx1 [Pongo abelii]
gi|311267821|ref|XP_003131754.1| PREDICTED: LIM/homeobox protein Lhx1-like [Sus scrofa]
gi|348567695|ref|XP_003469634.1| PREDICTED: LIM/homeobox protein Lhx1-like [Cavia porcellus]
gi|359320451|ref|XP_003639347.1| PREDICTED: LIM/homeobox protein Lhx1-like [Canis lupus familiaris]
gi|397494263|ref|XP_003818003.1| PREDICTED: LIM/homeobox protein Lhx1 [Pan paniscus]
gi|402899902|ref|XP_003912923.1| PREDICTED: LIM/homeobox protein Lhx1 [Papio anubis]
gi|403274736|ref|XP_003929119.1| PREDICTED: LIM/homeobox protein Lhx1 [Saimiri boliviensis
boliviensis]
gi|410980542|ref|XP_003996636.1| PREDICTED: LIM/homeobox protein Lhx1 [Felis catus]
gi|426348609|ref|XP_004041924.1| PREDICTED: LIM/homeobox protein Lhx1 [Gorilla gorilla gorilla]
gi|60389888|sp|Q5IS44.1|LHX1_PANTR RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein
1; AltName: Full=Homeobox protein Lim-1
gi|60389889|sp|Q5IS89.1|LHX1_SAIBB RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein
1; AltName: Full=Homeobox protein Lim-1
gi|56122252|gb|AAV74277.1| LIM homeobox protein 1 [Saimiri boliviensis]
gi|56122342|gb|AAV74322.1| LIM homeobox protein 1 [Pan troglodytes]
gi|355568607|gb|EHH24888.1| LIM/homeobox protein Lhx1 [Macaca mulatta]
gi|444720995|gb|ELW61755.1| LIM/homeobox protein Lhx1 [Tupaia chinensis]
Length = 406
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 57/104 (54%), Gaps = 6/104 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH C++C C C L E + + + CK D+ R FGT CA C + I +
Sbjct: 20 LDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRCFGTK--CAGCAQGISPSD 74
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 104
+V RA++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 75 LVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
>gi|157428018|ref|NP_001098917.1| LIM/homeobox protein Lhx1 [Bos taurus]
gi|358417202|ref|XP_003583582.1| PREDICTED: LIM/homeobox protein Lhx1-like [Bos taurus]
gi|157279406|gb|AAI53213.1| LHX1 protein [Bos taurus]
gi|296477035|tpg|DAA19150.1| TPA: LIM homeobox protein 1 [Bos taurus]
gi|440905066|gb|ELR55504.1| LIM/homeobox protein Lhx1 [Bos grunniens mutus]
Length = 406
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 57/104 (54%), Gaps = 6/104 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH C++C C C L E + + + CK D+ R FGT CA C + I +
Sbjct: 20 LDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRCFGTK--CAGCAQGISPSD 74
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 104
+V RA++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 75 LVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
>gi|405973461|gb|EKC38176.1| LIM/homeobox protein Awh [Crassostrea gigas]
Length = 278
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 60/102 (58%), Gaps = 5/102 (4%)
Query: 6 WHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVM 64
WH CL+C C C++G E ++ + + + I C+ DY R FGT CA C + I + + V
Sbjct: 65 WHVGCLRC--CICQIGLERQTSCFIREDNIYCRNDYSREFGTK--CAKCYRTIQSTDWVR 120
Query: 65 RAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
RA+ NVYHL CFAC C + G+ F L +++LC+ Y E
Sbjct: 121 RARENVYHLACFACDSCKRQLSTGEEFALHGDRVLCKSHYME 162
>gi|395531962|ref|XP_003768042.1| PREDICTED: LIM/homeobox protein Lhx1 [Sarcophilus harrisii]
Length = 406
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 57/104 (54%), Gaps = 6/104 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH C++C C C L E + + + CK D+ R FGT CA C + I +
Sbjct: 20 LDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRCFGTK--CAGCAQGISPSD 74
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 104
+V RA++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 75 LVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
>gi|148676722|gb|EDL08669.1| LIM homeobox protein 6, isoform CRA_c [Mus musculus]
Length = 395
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 119 NLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIYCKMDYFSRFGTK--CARCGRQIYASDW 175
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 176 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 218
>gi|6678688|ref|NP_032524.1| LIM/homeobox protein Lhx1 [Mus musculus]
gi|94400804|ref|NP_665887.3| LIM/homeobox protein Lhx1 [Rattus norvegicus]
gi|354477124|ref|XP_003500772.1| PREDICTED: LIM/homeobox protein Lhx1-like [Cricetulus griseus]
gi|51702761|sp|P63007.1|LHX1_RAT RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein
1; AltName: Full=Homeobox protein Lim-1; Short=Rlim
gi|51702763|sp|P63006.1|LHX1_MOUSE RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein
1; AltName: Full=Homeobox protein Lim-1
gi|51702764|sp|P63008.1|LHX1_MESAU RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein
1; AltName: Full=Homeobox protein LMX-2; AltName:
Full=Homeobox protein Lim-1
gi|2144068|pir||I58187 homeotic protein lim-1 - rat
gi|425217|emb|CAA81797.1| lim1 [Mus musculus]
gi|559636|gb|AAC60696.1| transcription factor [Rattus sp.]
gi|587463|emb|CAA57164.1| lmx2 [Mesocricetus auratus]
gi|4104801|gb|AAD02169.1| homeobox protein Lim1 [Mus musculus]
gi|62201098|gb|AAH92374.1| Lhx1 protein [Mus musculus]
gi|148683791|gb|EDL15738.1| LIM homeobox protein 1 [Mus musculus]
gi|149053699|gb|EDM05516.1| LIM homeobox protein 1 [Rattus norvegicus]
Length = 406
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 57/104 (54%), Gaps = 6/104 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH C++C C C L E + + + CK D+ R FGT CA C + I +
Sbjct: 20 LDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRCFGTK--CAGCAQGISPSD 74
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 104
+V RA++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 75 LVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
>gi|395845905|ref|XP_003795658.1| PREDICTED: LIM/homeobox protein Lhx1 [Otolemur garnettii]
Length = 407
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 57/104 (54%), Gaps = 6/104 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH C++C C C L E + + + CK D+ R FGT CA C + I +
Sbjct: 20 LDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRCFGTK--CAGCAQGISPSD 74
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 104
+V RA++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 75 LVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
>gi|74187870|dbj|BAE24561.1| unnamed protein product [Mus musculus]
Length = 406
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 57/104 (54%), Gaps = 6/104 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH C++C C C L E + + + CK D+ R FGT CA C + I +
Sbjct: 20 LDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRCFGTK--CAGCAQGISPSD 74
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 104
+V RA++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 75 LVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
>gi|291405647|ref|XP_002719296.1| PREDICTED: LIM homeobox protein 5 [Oryctolagus cuniculus]
Length = 406
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 57/104 (54%), Gaps = 6/104 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH C++C C C L E + + + CK D+ R FGT CA C + I +
Sbjct: 20 LDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRCFGTK--CAGCAQGISPSD 74
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 104
+V RA++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 75 LVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
>gi|344285733|ref|XP_003414614.1| PREDICTED: LIM/homeobox protein Lhx1-like [Loxodonta africana]
Length = 406
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 57/104 (54%), Gaps = 6/104 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH C++C C C L E + + + CK D+ R FGT CA C + I +
Sbjct: 20 LDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRCFGTK--CAGCAQGISPSD 74
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 104
+V RA++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 75 LVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
>gi|405976917|gb|EKC41395.1| LIM/homeobox protein Awh [Crassostrea gigas]
Length = 280
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 54/95 (56%), Gaps = 3/95 (3%)
Query: 6 WHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMR 65
WH DCL+C C C E + + K I C+RDY+ FGT C+ C + I A + V R
Sbjct: 72 WHTDCLRCCVC-CSSLEQEESCFVKDENIYCRRDYISEFGTK--CSKCYRKIQATDWVRR 128
Query: 66 AKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILC 100
A+ NVYHL CFAC C + G+ F L +++LC
Sbjct: 129 ARENVYHLACFACDSCQRQLSTGEEFALSGDQLLC 163
>gi|70570020|dbj|BAE06522.1| transcription factor protein [Ciona intestinalis]
Length = 402
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 57/105 (54%), Gaps = 3/105 (2%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A +L WH CLKC C L E T + + CKRDY RLFGT C C
Sbjct: 56 APNLEWHAGCLKCADCGQYLDET-CTCFVRDGKTYCKRDYTRLFGTK--CNKCGLCFSKN 112
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
+ VMRA++ +YH++CF C C+ + GD F L D+ + C+ D+E
Sbjct: 113 DFVMRARDKIYHIQCFKCVACSRQLIPGDEFALRDDGLFCKADHE 157
>gi|62859483|ref|NP_001016082.1| LIM homeobox 5 [Xenopus (Silurana) tropicalis]
gi|89269010|emb|CAJ81605.1| LIM homeobox 5 [Xenopus (Silurana) tropicalis]
gi|189441838|gb|AAI67665.1| LIM homeobox 5 [Xenopus (Silurana) tropicalis]
gi|213624072|gb|AAI70608.1| LIM homeobox 5 [Xenopus (Silurana) tropicalis]
gi|213624092|gb|AAI70634.1| LIM homeobox 5 [Xenopus (Silurana) tropicalis]
Length = 402
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 57/104 (54%), Gaps = 6/104 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH C++C C C L E + + + CK D+ R FGT CA C+ I +
Sbjct: 21 LDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKTDFFRRFGTK--CAGCSLGISPSD 75
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 104
+V +A+N V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 76 LVRKARNKVFHLNCFTCMVCNKQLSTGEELYIIDENKFVCKEDY 119
>gi|71361857|gb|AAZ30032.1| LIM homeodomain protein, partial [Gallus gallus]
Length = 235
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 47 NLIWHVRCLECSVCRTSLRQQHS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDW 103
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 104 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 146
>gi|147902022|ref|NP_001084038.1| LIM/homeobox protein Lhx5 [Xenopus laevis]
gi|1708831|sp|P37137.2|LHX5_XENLA RecName: Full=LIM/homeobox protein Lhx5; Short=LIM homeobox protein
5; AltName: Full=Homeobox protein LIM-5; Short=xLIM-5;
AltName: Full=xLIM-2A
gi|840658|gb|AAA99464.1| LIM class homeodomain protein [Xenopus laevis]
gi|54311470|gb|AAH84744.1| Lim5/Lhx5 protein [Xenopus laevis]
Length = 402
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 57/104 (54%), Gaps = 6/104 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH C++C C C L E + + + CK D+ R FGT CA C+ I +
Sbjct: 21 LDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKTDFFRRFGTK--CAGCSLGISPSD 75
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 104
+V +A+N V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 76 LVRKARNKVFHLNCFTCMVCNKQLSTGEELYIIDENKFVCKEDY 119
>gi|340710825|ref|XP_003393984.1| PREDICTED: LIM/homeobox protein Lhx5-like [Bombus terrestris]
Length = 479
Score = 76.6 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 37/104 (35%), Positives = 57/104 (54%), Gaps = 6/104 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH +C++C DCR ++A L C+ D+ R +GT C+ C + I +
Sbjct: 21 LDRAWHVECVRC--FDCRTTLQDKCFSREAKL-FCREDFFRRYGTK--CSGCLQGISPQD 75
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFY-LCDNKILCEYDY 104
+V +A++ V+HL CF C C + G+ Y L DNK +C+ DY
Sbjct: 76 LVRKARDKVFHLNCFTCLVCRKQMSTGEELYVLDDNKFVCKQDY 119
>gi|158292633|ref|XP_558527.3| AGAP005137-PA [Anopheles gambiae str. PEST]
gi|157017083|gb|EAL40471.3| AGAP005137-PA [Anopheles gambiae str. PEST]
Length = 432
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 62/129 (48%), Gaps = 26/129 (20%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGY----------- 49
+ D FWHE CL C C CR+ ++ T Y K + CK DY R+FG +
Sbjct: 35 SPDQFWHEQCLLC--CICRI-QLSQTCYTKNTKVYCKDDYYRIFGVSSVHQQNQQHHQQH 91
Query: 50 ------------CAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNK 97
C C + I EMVMRAK+ VYHL CF C CN G+ F + K
Sbjct: 92 GQQQQQQQHQRDCYGCGERIAPIEMVMRAKHLVYHLHCFLCYTCNRPLQKGEPFSIRAGK 151
Query: 98 ILCEYDYEE 106
++C++D E+
Sbjct: 152 LICQHDLEK 160
>gi|193786574|dbj|BAG51357.1| unnamed protein product [Homo sapiens]
Length = 406
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 57/106 (53%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K CK DY R F + CA C I A
Sbjct: 68 AVDKQWHMRCLKC--CECKLNLESELTCFSKDGSSYCKEDYYRRF-SVQRCARCHLGISA 124
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA++ VYHL CF C CN GD F + D+ + C +E
Sbjct: 125 SEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFE 170
>gi|62020648|gb|AAH20470.1| LHX1 protein, partial [Homo sapiens]
Length = 260
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 57/104 (54%), Gaps = 6/104 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH C++C C C L E + + + CK D+ R FGT CA C + I +
Sbjct: 20 LDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRCFGTK--CAGCAQGISPSD 74
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 104
+V RA++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 75 LVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
>gi|5738956|dbj|BAA83421.1| LIM-homeodomain (LHX) protein 6.1a [Mus musculus]
Length = 363
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 87 NLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIYCKMDYFSRFGTK--CARCGRQIYASDW 143
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 144 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 186
>gi|351696664|gb|EHA99582.1| LIM/homeobox protein Lhx1 [Heterocephalus glaber]
Length = 406
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 57/104 (54%), Gaps = 6/104 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH C++C C C L E + + + CK D+ R FGT CA C + I +
Sbjct: 20 LDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRCFGTK--CAGCAQGISPSD 74
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 104
+V RA++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 75 LVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
>gi|344241263|gb|EGV97366.1| LIM/homeobox protein Lhx6 [Cricetulus griseus]
Length = 363
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 87 NLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIYCKMDYFSRFGTK--CARCGRQIYASDW 143
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 144 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 186
>gi|133893073|ref|NP_001076594.1| LIM/homeobox protein Lhx6 isoform 2 [Mus musculus]
Length = 377
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 116 NLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIYCKMDYFSRFGTK--CARCGRQIYASDW 172
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 173 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 215
>gi|332258740|ref|XP_003278453.1| PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx1 [Nomascus
leucogenys]
Length = 374
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 57/104 (54%), Gaps = 6/104 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH C++C C C L E + + + CK D+ R FGT CA C + I +
Sbjct: 20 LDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRCFGTK--CAGCAQGISPSD 74
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 104
+V RA++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 75 LVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
>gi|5738954|dbj|BAA83420.1| LIM-homeodomain (LHX) protein 6.1b [Mus musculus]
Length = 348
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 87 NLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIYCKMDYFSRFGTK--CARCGRQIYASDW 143
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 144 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 186
>gi|449478466|ref|XP_002188127.2| PREDICTED: LIM/homeobox protein Lhx6 [Taeniopygia guttata]
Length = 421
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 145 NLIWHVRCLECSVCRTSLRQQHS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDW 201
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 202 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 244
>gi|45382269|ref|NP_990744.1| LIM/homeobox protein Lhx1 [Gallus gallus]
gi|1708826|sp|P53411.1|LHX1_CHICK RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein
1; AltName: Full=Homeobox protein Lim-1
gi|531183|gb|AAA62173.1| amino acid feature: homeodomain, bp 674 .. 853; amino acid feature:
LIM2, bp 326 .. 481; amino acid feature: LIM1, bp 149
..292 [Gallus gallus]
Length = 406
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 57/104 (54%), Gaps = 6/104 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH C++C C C L E + + + CK D+ R FGT CA C + I +
Sbjct: 20 LDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRCFGTK--CAGCAQGISPSD 74
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 104
+V RA++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 75 LVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
>gi|354500653|ref|XP_003512413.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 2 [Cricetulus griseus]
Length = 377
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 116 NLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIYCKMDYFSRFGTK--CARCGRQIYASDW 172
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 173 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 215
>gi|149038911|gb|EDL93131.1| LIM homeobox protein 6 (predicted), isoform CRA_b [Rattus
norvegicus]
Length = 373
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 112 NLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIYCKMDYFSRFGTK--CARCGRQIYASDW 168
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 169 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 211
>gi|133892051|ref|NP_001076596.1| LIM/homeobox protein Lhx6 isoform 4 [Mus musculus]
gi|148676720|gb|EDL08667.1| LIM homeobox protein 6, isoform CRA_a [Mus musculus]
Length = 348
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 87 NLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIYCKMDYFSRFGTK--CARCGRQIYASDW 143
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 144 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 186
>gi|133892446|ref|NP_001076595.1| LIM/homeobox protein Lhx6 isoform 3 [Mus musculus]
gi|341940899|sp|Q9R1R0.2|LHX6_MOUSE RecName: Full=LIM/homeobox protein Lhx6; Short=LIM homeobox protein
6; AltName: Full=LIM/homeobox protein Lhx6.1
gi|40787713|gb|AAH65077.1| Lhx6 protein [Mus musculus]
Length = 363
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 87 NLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIYCKMDYFSRFGTK--CARCGRQIYASDW 143
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 144 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 186
>gi|354500655|ref|XP_003512414.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 3 [Cricetulus griseus]
Length = 366
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 105 NLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIYCKMDYFSRFGTK--CARCGRQIYASDW 161
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 162 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 204
>gi|354500651|ref|XP_003512412.1| PREDICTED: LIM/homeobox protein Lhx6 isoform 1 [Cricetulus griseus]
Length = 392
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 116 NLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIYCKMDYFSRFGTK--CARCGRQIYASDW 172
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 173 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 215
>gi|122053813|gb|ABM65885.1| LHX6 [Ateles geoffroyi]
Length = 113
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 3 NLIWHVRCLECSVCRTSLRQQNSC-YIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDW 59
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 60 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 102
>gi|133891794|ref|NP_032526.2| LIM/homeobox protein Lhx6 isoform 1 [Mus musculus]
Length = 392
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 116 NLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIYCKMDYFSRFGTK--CARCGRQIYASDW 172
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 173 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 215
>gi|74096249|ref|NP_001027767.1| LIM homeodomain protein [Ciona intestinalis]
gi|3150146|emb|CAA06919.1| LIM homeodomain protein [Ciona intestinalis]
Length = 381
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 57/105 (54%), Gaps = 3/105 (2%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A +L WH CLKC C L E T + + CKRDY RLFGT C C
Sbjct: 35 APNLEWHAGCLKCADCGQYLDET-CTCFVRDGKTYCKRDYTRLFGTK--CNKCGLCFSKN 91
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
+ VMRA++ +YH++CF C C+ + GD F L D+ + C+ D+E
Sbjct: 92 DFVMRARDKIYHIQCFKCVACSRQLIPGDEFALRDDGLFCKADHE 136
>gi|432861700|ref|XP_004069695.1| PREDICTED: insulin gene enhancer protein isl-2a-like [Oryzias
latipes]
Length = 358
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 59/105 (56%), Gaps = 3/105 (2%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+ DL WH CLKC C+ L E T + + CKRDY RLFG CA C +
Sbjct: 43 SPDLEWHAACLKCAECNQYLDET-CTCFVRDGKTYCKRDYARLFGIK--CAKCNTGFCSS 99
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
++VMRA+ VYH+ECF C C+ GD F L ++++LC +++
Sbjct: 100 DLVMRAREKVYHMECFRCSVCSRHLLPGDEFSLREDELLCRANHD 144
>gi|52354701|gb|AAH82847.1| Unknown (protein for MGC:81549) [Xenopus laevis]
Length = 402
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 58/104 (55%), Gaps = 6/104 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH C++C C C L E + + + + CK D+ R FGT CA C+ I +
Sbjct: 21 LDRAWHVKCVQCCECKCNLTE---KCFSRDSKLYCKTDFFRRFGTK--CAGCSLGISPSD 75
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 104
+V +A+N V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 76 LVRKARNKVFHLNCFTCMVCNKQLSTGEELYIIDENKFVCKEDY 119
>gi|157821727|ref|NP_001101307.1| LIM/homeobox protein Lhx6 [Rattus norvegicus]
gi|149038910|gb|EDL93130.1| LIM homeobox protein 6 (predicted), isoform CRA_a [Rattus
norvegicus]
Length = 388
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 112 NLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIYCKMDYFSRFGTK--CARCGRQIYASDW 168
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 169 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 211
>gi|338720274|ref|XP_001916843.2| PREDICTED: LIM/homeobox protein Lhx6-like [Equus caballus]
Length = 239
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 87 NLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDW 143
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 144 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 186
>gi|148676723|gb|EDL08670.1| LIM homeobox protein 6, isoform CRA_d [Mus musculus]
Length = 388
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 112 NLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIYCKMDYFSRFGTK--CARCGRQIYASDW 168
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 169 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 211
>gi|120974023|gb|ABM46619.1| LHX6 [Gorilla gorilla]
gi|121221779|gb|ABM47587.1| LHX6 [Saguinus labiatus]
Length = 114
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 3 NLIWHVRCLECSVCRTSLRQQNSC-YIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDW 59
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 60 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 102
>gi|259013450|ref|NP_001158468.1| ISL LIM homeobox 1 [Saccoglossus kowalevskii]
gi|197320557|gb|ACH68440.1| islet homeobox protein [Saccoglossus kowalevskii]
Length = 383
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 60/105 (57%), Gaps = 3/105 (2%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A DL WH CLKC C+ L E T + + + CKR Y+RLFGT CA C
Sbjct: 32 APDLEWHASCLKCTDCNQYLDET-CTCFVRDSKTYCKRCYVRLFGTK--CAKCNLGFSKN 88
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
+ VMRA+N ++H++CF C C+ + GD F L D+ + C+ D++
Sbjct: 89 DFVMRARNKIFHIDCFRCVACSRQLIPGDEFALRDDGLFCKADHD 133
>gi|121483796|gb|ABM54189.1| LHX6 [Pan paniscus]
gi|124054101|gb|ABM89234.1| LHX6 [Pongo pygmaeus]
Length = 198
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 87 NLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDW 143
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 144 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 186
>gi|443696308|gb|ELT97041.1| hypothetical protein CAPTEDRAFT_43751, partial [Capitella teleta]
Length = 271
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A++ WH +CL+C C L + T Y + I CK DY RLF C+ C I A
Sbjct: 17 AVERAWHANCLRCAQCKLPL-DSEVTCYARDGSIFCKEDYYRLFAIK-RCSGCHLAISAN 74
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
E+VM+A+++VYH+ CF C C+ G+ F + +N I C YE
Sbjct: 75 ELVMKARDSVYHMNCFTCASCHKLLITGEHFGMKENLIYCRMHYE 119
>gi|122934839|gb|ABM68157.1| LHX6 [Lagothrix lagotricha]
Length = 198
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 87 NLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDW 143
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 144 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 186
>gi|341889206|gb|EGT45141.1| CBN-LIN-11 protein [Caenorhabditis brenneri]
Length = 372
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 66/133 (49%), Gaps = 7/133 (5%)
Query: 6 WHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMR 65
WH+ CL+C CDCR + T + K LILCK DY R +G CA C + ++V R
Sbjct: 95 WHQSCLRC--CDCR-APMSMTCFSKDGLILCKSDYSRRYG--HRCAGCDGKLEKEDLVRR 149
Query: 66 AKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDYEERQVFCVGDRFY-LCDNKI 123
A++ V+H+ CF C C GD+ Y+ + N+ +C+ D++ + N
Sbjct: 150 ARDKVFHIRCFQCSVCQRLLDTGDQLYIMEGNRFMCQNDFQTATKTSTPTSMHRPVSNGS 209
Query: 124 LCEYDYEERQVFA 136
C D EE V A
Sbjct: 210 ECNSDMEEDNVDA 222
>gi|18858973|ref|NP_571291.1| LIM/homeobox protein Lhx1 [Danio rerio]
gi|2497670|sp|Q90476.1|LHX1_DANRE RecName: Full=LIM/homeobox protein Lhx1; Short=LIM homeobox protein
1; AltName: Full=Homeobox protein Lim-1
gi|577525|gb|AAA92157.1| homeodomain protein [Danio rerio]
gi|190336961|gb|AAI62664.1| LIM homeobox 1a [Danio rerio]
gi|190339482|gb|AAI62396.1| LIM homeobox 1a [Danio rerio]
Length = 405
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 57/104 (54%), Gaps = 6/104 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH C++C C C L E + + + CK D+ R FGT CA C + I +
Sbjct: 20 LDRAWHIKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRRFGTK--CAGCAQGISPND 74
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 104
+V RA++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 75 LVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKDDY 118
>gi|47225812|emb|CAF98292.1| unnamed protein product [Tetraodon nigroviridis]
Length = 360
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 58/104 (55%), Gaps = 3/104 (2%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+ DL WH CLKC C L E T + + CKRDY R+FG CA C +
Sbjct: 43 SPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDYARIFGIK--CAKCNVGFCSS 99
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 104
++VMRA++NVYH+ECF C C GD F L ++++LC D+
Sbjct: 100 DLVMRARDNVYHMECFRCSVCCRHLLPGDEFSLREDELLCRADH 143
>gi|549846|gb|AAA21644.1| LIM domain transcription factor LIM-1 [Homo sapiens]
Length = 404
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 57/104 (54%), Gaps = 6/104 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH C++C C C L E + + + CK D+ R FGT CA C + I +
Sbjct: 20 LDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRCFGTK--CAGCRQGISPSD 74
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 104
+V RA++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 75 LVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDY 118
>gi|124111083|gb|ABM91915.1| LHX6 [Pan troglodytes]
Length = 198
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 87 NLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDW 143
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 144 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 186
>gi|195402627|ref|XP_002059906.1| apterous [Drosophila virilis]
gi|27374202|gb|AAN87274.1| ap [Drosophila virilis]
gi|194140772|gb|EDW57243.1| apterous [Drosophila virilis]
Length = 472
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 40/104 (38%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A++ WH CL+C C L E S+ Y + I CK DY FGT C+ C I +
Sbjct: 165 AVEKRWHASCLQCYACRQPL-ERESSCYSRDGNIYCKNDYYSFFGTR-RCSRCLASISSN 222
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 104
E+VMRA+N V+H+ CF C C+ GD++ + D I C Y
Sbjct: 223 ELVMRARNLVFHVNCFCCTVCHTPLTKGDQYGIIDALIYCRTHY 266
>gi|281360182|ref|NP_001163058.1| apterous, isoform C [Drosophila melanogaster]
gi|17862966|gb|AAL39960.1| SD05618p [Drosophila melanogaster]
gi|272432345|gb|ACZ94338.1| apterous, isoform C [Drosophila melanogaster]
Length = 468
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 40/104 (38%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A++ WH CL+C C L E S+ Y + I CK DY FGT C+ C I +
Sbjct: 162 AVEKRWHASCLQCYACRQPL-ERESSCYSRDGNIYCKNDYYSFFGTR-RCSRCLASISSN 219
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 104
E+VMRA+N V+H+ CF C C+ GD++ + D I C Y
Sbjct: 220 ELVMRARNLVFHVNCFCCTVCHTPLTKGDQYGIIDALIYCRTHY 263
>gi|195119850|ref|XP_002004442.1| GI19612 [Drosophila mojavensis]
gi|193909510|gb|EDW08377.1| GI19612 [Drosophila mojavensis]
Length = 485
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 40/104 (38%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A++ WH CL+C C L E S+ Y + I CK DY FGT C+ C I +
Sbjct: 178 AVEKRWHASCLQCYACRQPL-ERESSCYSRDGNIYCKNDYYSFFGTR-RCSRCLASISSN 235
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 104
E+VMRA+N V+H+ CF C C+ GD++ + D I C Y
Sbjct: 236 ELVMRARNLVFHVNCFCCTVCHTPLTKGDQYGIIDALIYCRTHY 279
>gi|24585889|ref|NP_724428.1| apterous, isoform A [Drosophila melanogaster]
gi|195580840|ref|XP_002080242.1| GD10352 [Drosophila simulans]
gi|231559|sp|P29673.1|APTE_DROME RecName: Full=Protein apterous
gi|7601|emb|CAA46276.1| developmental regulatory protein [Drosophila melanogaster]
gi|157822|gb|AAA28673.1| LIM-homeodomain apterous protein [Drosophila melanogaster]
gi|7302219|gb|AAF57314.1| apterous, isoform A [Drosophila melanogaster]
gi|28912908|gb|AAO61758.1| HL02012p [Drosophila melanogaster]
gi|194192251|gb|EDX05827.1| GD10352 [Drosophila simulans]
gi|220942502|gb|ACL83794.1| ap-PA [synthetic construct]
gi|220952712|gb|ACL88899.1| ap-PA [synthetic construct]
Length = 469
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 40/104 (38%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A++ WH CL+C C L E S+ Y + I CK DY FGT C+ C I +
Sbjct: 163 AVEKRWHASCLQCYACRQPL-ERESSCYSRDGNIYCKNDYYSFFGTR-RCSRCLASISSN 220
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 104
E+VMRA+N V+H+ CF C C+ GD++ + D I C Y
Sbjct: 221 ELVMRARNLVFHVNCFCCTVCHTPLTKGDQYGIIDALIYCRTHY 264
>gi|383853574|ref|XP_003702297.1| PREDICTED: LIM/homeobox protein Lhx5-like [Megachile rotundata]
Length = 485
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 37/104 (35%), Positives = 57/104 (54%), Gaps = 6/104 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH +C++C DCR ++A L C+ D+ R +GT C+ C + I +
Sbjct: 21 LDRAWHVECVRC--FDCRTTLQDKCFSREAKL-FCREDFFRRYGTK--CSGCLQGISPQD 75
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFY-LCDNKILCEYDY 104
+V +A++ V+HL CF C C + G+ Y L DNK +C+ DY
Sbjct: 76 LVRKARDKVFHLNCFTCLVCRKQMSTGEELYVLDDNKFVCKQDY 119
>gi|125810912|ref|XP_001361667.1| ap [Drosophila pseudoobscura pseudoobscura]
gi|195154388|ref|XP_002018104.1| GL16944 [Drosophila persimilis]
gi|27374288|gb|AAO01041.1| ap-PA [Drosophila pseudoobscura]
gi|54636843|gb|EAL26246.1| ap [Drosophila pseudoobscura pseudoobscura]
gi|194113900|gb|EDW35943.1| GL16944 [Drosophila persimilis]
Length = 469
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 40/104 (38%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A++ WH CL+C C L E S+ Y + I CK DY FGT C+ C I +
Sbjct: 163 AVEKRWHASCLQCYACRQPL-ERESSCYSRDGNIYCKNDYYSFFGTR-RCSRCLASISSN 220
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 104
E+VMRA+N V+H+ CF C C+ GD++ + D I C Y
Sbjct: 221 ELVMRARNLVFHVNCFCCTVCHTPLTKGDQYGIIDALIYCRTHY 264
>gi|195425678|ref|XP_002061119.1| apterous [Drosophila willistoni]
gi|27374312|gb|AAO01060.1| ap-PA [Drosophila willistoni]
gi|194157204|gb|EDW72105.1| apterous [Drosophila willistoni]
Length = 469
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 40/104 (38%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A++ WH CL+C C L E S+ Y + I CK DY FGT C+ C I +
Sbjct: 164 AVEKRWHASCLQCYACRQPL-ERESSCYSRDGNIYCKNDYYSFFGTR-RCSRCLASISSN 221
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 104
E+VMRA+N V+H+ CF C C+ GD++ + D I C Y
Sbjct: 222 ELVMRARNLVFHVNCFCCTVCHTPLTKGDQYGIIDALIYCRTHY 265
>gi|195475694|ref|XP_002090119.1| GE19443 [Drosophila yakuba]
gi|194176220|gb|EDW89831.1| GE19443 [Drosophila yakuba]
Length = 469
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 40/104 (38%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A++ WH CL+C C L E S+ Y + I CK DY FGT C+ C I +
Sbjct: 163 AVEKRWHASCLQCYACRQPL-ERESSCYSRDGNIYCKNDYYSFFGTR-RCSRCLASISSN 220
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 104
E+VMRA+N V+H+ CF C C+ GD++ + D I C Y
Sbjct: 221 ELVMRARNLVFHVNCFCCTVCHTPLTKGDQYGIIDALIYCRSHY 264
>gi|194864184|ref|XP_001970812.1| ap [Drosophila erecta]
gi|190662679|gb|EDV59871.1| ap [Drosophila erecta]
Length = 469
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 40/104 (38%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A++ WH CL+C C L E S+ Y + I CK DY FGT C+ C I +
Sbjct: 163 AVEKRWHASCLQCYACRQPL-ERESSCYSRDGNIYCKNDYYSFFGTR-RCSRCLASISSN 220
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 104
E+VMRA+N V+H+ CF C C+ GD++ + D I C Y
Sbjct: 221 ELVMRARNLVFHVNCFCCTVCHTPLTKGDQYGIIDALIYCRTHY 264
>gi|300797454|ref|NP_001178254.1| LIM homeobox transcription factor 1-alpha [Bos taurus]
gi|296489924|tpg|DAA32037.1| TPA: LIM homeobox transcription factor 1 alpha-like [Bos taurus]
Length = 382
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 61/111 (54%), Gaps = 6/111 (5%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
D FWHE C++C C L +T + + + CK DY +LF C C + I E
Sbjct: 52 DSFWHEQCVQCASCKEPLE---TTCFYRDKKLYCKYDYEKLFAVK--CGGCFEAIAPNEF 106
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE-ERQVFCV 112
VMRA+ +VYHL CF C C + GD F L + ++LC+ DYE ER++ +
Sbjct: 107 VMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKERELLSL 157
>gi|426217051|ref|XP_004002767.1| PREDICTED: LIM homeobox transcription factor 1-alpha [Ovis aries]
Length = 382
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 61/111 (54%), Gaps = 6/111 (5%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
D FWHE C++C C L +T + + + CK DY +LF C C + I E
Sbjct: 52 DSFWHEQCVQCASCKEPLE---TTCFYRDKKLYCKYDYEKLFAVK--CGGCFEAIAPNEF 106
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE-ERQVFCV 112
VMRA+ +VYHL CF C C + GD F L + ++LC+ DYE ER++ +
Sbjct: 107 VMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKERELLSL 157
>gi|403272543|ref|XP_003928115.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 1
[Saimiri boliviensis boliviensis]
gi|403272545|ref|XP_003928116.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 2
[Saimiri boliviensis boliviensis]
Length = 382
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 61/111 (54%), Gaps = 6/111 (5%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
D FWHE C++C C L +T + + + CK DY +LF C C + I E
Sbjct: 52 DSFWHEQCVQCASCKEPLE---TTCFYRDKKLYCKYDYEKLFAVK--CGGCFEAIAPNEF 106
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE-ERQVFCV 112
VMRA+ +VYHL CF C C + GD F L + ++LC+ DYE ER++ +
Sbjct: 107 VMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKERELLSL 157
>gi|91077954|ref|XP_967240.1| PREDICTED: similar to CG32105 CG32105-PB [Tribolium castaneum]
Length = 472
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 38/104 (36%), Positives = 54/104 (51%), Gaps = 5/104 (4%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
D WHE CL C C +L + Y + + CK DY R+FG C+ C + EM
Sbjct: 145 DASWHEHCLTCSICGVQLAH---SCYTRNTKLYCKADYDRIFGVK--CSRCGDRLLPHEM 199
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
VMRA+ +V+HL CF C C G++F L ++ C D+E+
Sbjct: 200 VMRAQQHVFHLPCFVCVVCCQPLQKGEQFVLRAGQLFCRQDFEK 243
>gi|410986575|ref|XP_003999585.1| PREDICTED: LIM homeobox transcription factor 1-alpha [Felis catus]
Length = 382
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 61/111 (54%), Gaps = 6/111 (5%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
D FWHE C++C C L +T + + + CK DY +LF C C + I E
Sbjct: 52 DSFWHEQCVQCASCKEPLE---TTCFYRDKKLYCKYDYEKLFAVK--CGGCFEAIAPNEF 106
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE-ERQVFCV 112
VMRA+ +VYHL CF C C + GD F L + ++LC+ DYE ER++ +
Sbjct: 107 VMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKERELLSL 157
>gi|395825137|ref|XP_003785798.1| PREDICTED: LIM homeobox transcription factor 1-alpha [Otolemur
garnettii]
Length = 382
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 61/111 (54%), Gaps = 6/111 (5%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
D FWHE C++C C L +T + + + CK DY +LF C C + I E
Sbjct: 52 DSFWHEQCVQCASCKEPLE---TTCFYRDKKLYCKYDYEKLFAVK--CGGCFEAIAPNEF 106
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE-ERQVFCV 112
VMRA+ +VYHL CF C C + GD F L + ++LC+ DYE ER++ +
Sbjct: 107 VMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKERELLSL 157
>gi|28893581|ref|NP_796372.1| LIM homeobox transcription factor 1-alpha [Homo sapiens]
gi|291327513|ref|NP_001167540.1| LIM homeobox transcription factor 1-alpha [Homo sapiens]
gi|109019319|ref|XP_001084612.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 2
[Macaca mulatta]
gi|109019321|ref|XP_001084727.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 3
[Macaca mulatta]
gi|114561083|ref|XP_001174539.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 2 [Pan
troglodytes]
gi|114561085|ref|XP_001174542.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 3 [Pan
troglodytes]
gi|296229940|ref|XP_002760489.1| PREDICTED: LIM homeobox transcription factor 1-alpha [Callithrix
jacchus]
gi|397508364|ref|XP_003824628.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 1 [Pan
paniscus]
gi|397508366|ref|XP_003824629.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 2 [Pan
paniscus]
gi|402858034|ref|XP_003893535.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 1
[Papio anubis]
gi|402858036|ref|XP_003893536.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 2
[Papio anubis]
gi|426332555|ref|XP_004027869.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 1
[Gorilla gorilla gorilla]
gi|426332557|ref|XP_004027870.1| PREDICTED: LIM homeobox transcription factor 1-alpha isoform 2
[Gorilla gorilla gorilla]
gi|27923801|sp|Q8TE12.1|LMX1A_HUMAN RecName: Full=LIM homeobox transcription factor 1-alpha; AltName:
Full=LIM/homeobox protein 1.1; Short=LMX-1.1; AltName:
Full=LIM/homeobox protein LMX1A
gi|19879681|gb|AAL82892.1| LIM homeobox transcription factor 1 alpha [Homo sapiens]
gi|119611150|gb|EAW90744.1| LIM homeobox transcription factor 1, alpha, isoform CRA_b [Homo
sapiens]
gi|182887815|gb|AAI60062.1| LIM homeobox transcription factor 1, alpha [synthetic construct]
gi|193785405|dbj|BAG54558.1| unnamed protein product [Homo sapiens]
gi|208966672|dbj|BAG73350.1| LIM homeobox transcription factor 1, alpha [synthetic construct]
gi|355558990|gb|EHH15770.1| hypothetical protein EGK_01906 [Macaca mulatta]
gi|355746154|gb|EHH50779.1| hypothetical protein EGM_01656 [Macaca fascicularis]
Length = 382
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 61/111 (54%), Gaps = 6/111 (5%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
D FWHE C++C C L +T + + + CK DY +LF C C + I E
Sbjct: 52 DSFWHEQCVQCASCKEPLE---TTCFYRDKKLYCKYDYEKLFAVK--CGGCFEAIAPNEF 106
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE-ERQVFCV 112
VMRA+ +VYHL CF C C + GD F L + ++LC+ DYE ER++ +
Sbjct: 107 VMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKERELLSL 157
>gi|348525932|ref|XP_003450475.1| PREDICTED: LIM/homeobox protein Lhx1-like [Oreochromis niloticus]
Length = 399
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 57/105 (54%), Gaps = 6/105 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH C++C C C L E + + + CK D+ R FGT CA C + I +
Sbjct: 20 LDRPWHIKCVQCCDCKCSLTE---KCFSREGKLYCKNDFFRKFGTK--CAGCAQGILPSD 74
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDN-KILCEYDYE 105
+V RAK+ V+HL CF C CN + G+ Y+ D K +C+ DYE
Sbjct: 75 LVRRAKSKVFHLNCFTCVMCNKQLSTGEELYILDEFKFVCKEDYE 119
>gi|311253923|ref|XP_003125689.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like [Sus
scrofa]
Length = 382
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 61/111 (54%), Gaps = 6/111 (5%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
D FWHE C++C C L +T + + + CK DY +LF C C + I E
Sbjct: 52 DSFWHEQCVQCASCKEPLE---TTCFYRDKKLYCKYDYEKLFAVK--CGGCFEAIAPNEF 106
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE-ERQVFCV 112
VMRA+ +VYHL CF C C + GD F L + ++LC+ DYE ER++ +
Sbjct: 107 VMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKERELLSL 157
>gi|348565813|ref|XP_003468697.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like [Cavia
porcellus]
Length = 382
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 61/111 (54%), Gaps = 6/111 (5%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
D FWHE C++C C L +T + + + CK DY +LF C C + I E
Sbjct: 52 DSFWHEQCVQCASCKEPLE---TTCFYRDKKLYCKYDYEKLFAVK--CGGCFEAIAPNEF 106
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE-ERQVFCV 112
VMRA+ +VYHL CF C C + GD F L + ++LC+ DYE ER++ +
Sbjct: 107 VMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKERELLSL 157
>gi|195027475|ref|XP_001986608.1| GH20430 [Drosophila grimshawi]
gi|193902608|gb|EDW01475.1| GH20430 [Drosophila grimshawi]
Length = 469
Score = 76.3 bits (186), Expect = 5e-12, Method: Composition-based stats.
Identities = 40/104 (38%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A++ WH CL+C C L E S+ Y + I CK DY FGT C+ C I +
Sbjct: 163 AVEKRWHASCLQCYACRQPL-ERESSCYSRDGNIYCKNDYYSFFGTR-RCSRCLASISSN 220
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 104
E+VMRA+N V+H+ CF C C+ GD++ + D I C Y
Sbjct: 221 ELVMRARNLVFHVNCFCCTVCHTPLTKGDQYGIIDALIYCRTHY 264
>gi|332220030|ref|XP_003259160.1| PREDICTED: LOW QUALITY PROTEIN: LIM homeobox transcription factor
1-alpha [Nomascus leucogenys]
Length = 368
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 61/111 (54%), Gaps = 6/111 (5%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
D FWHE C++C C L +T + + + CK DY +LF C C + I E
Sbjct: 52 DSFWHEQCVQCASCKEPLE---TTCFYRDKKLYCKYDYEKLFAVK--CGGCFEAIAPNEF 106
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE-ERQVFCV 112
VMRA+ +VYHL CF C C + GD F L + ++LC+ DYE ER++ +
Sbjct: 107 VMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKERELLSL 157
>gi|291397514|ref|XP_002715925.1| PREDICTED: LIM homeobox transcription factor 1 alpha-like
[Oryctolagus cuniculus]
Length = 382
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 61/111 (54%), Gaps = 6/111 (5%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
D FWHE C++C C L +T + + + CK DY +LF C C + I E
Sbjct: 52 DSFWHEQCVQCASCKEPLE---TTCFYRDKKLYCKYDYEKLFAVK--CGGCFEAIAPNEF 106
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE-ERQVFCV 112
VMRA+ +VYHL CF C C + GD F L + ++LC+ DYE ER++ +
Sbjct: 107 VMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKERELLSL 157
>gi|351696220|gb|EHA99138.1| LIM homeobox transcription factor 1-alpha [Heterocephalus glaber]
Length = 382
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 61/111 (54%), Gaps = 6/111 (5%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
D FWHE C++C C L +T + + + CK DY +LF C C + I E
Sbjct: 52 DSFWHEQCVQCASCKEPLE---TTCFYRDKKLYCKYDYEKLFAVK--CGGCFEAIAPNEF 106
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE-ERQVFCV 112
VMRA+ +VYHL CF C C + GD F L + ++LC+ DYE ER++ +
Sbjct: 107 VMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKERELLSL 157
>gi|345797790|ref|XP_851352.2| PREDICTED: LIM homeobox transcription factor 1-alpha [Canis lupus
familiaris]
Length = 382
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 61/111 (54%), Gaps = 6/111 (5%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
D FWHE C++C C L +T + + + CK DY +LF C C + I E
Sbjct: 52 DSFWHEQCVQCASCKEPLE---TTCFYRDKKLYCKYDYEKLFAVK--CGGCFEAIAPNEF 106
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE-ERQVFCV 112
VMRA+ +VYHL CF C C + GD F L + ++LC+ DYE ER++ +
Sbjct: 107 VMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKERELLSL 157
>gi|149755774|ref|XP_001493379.1| PREDICTED: LIM homeobox transcription factor 1-alpha [Equus
caballus]
Length = 382
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 61/111 (54%), Gaps = 6/111 (5%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
D FWHE C++C C L +T + + + CK DY +LF C C + I E
Sbjct: 52 DSFWHEQCVQCASCKEPLE---TTCFYRDKKLYCKYDYEKLFAVK--CGGCFEAIAPNEF 106
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE-ERQVFCV 112
VMRA+ +VYHL CF C C + GD F L + ++LC+ DYE ER++ +
Sbjct: 107 VMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKERELLSL 157
>gi|348532229|ref|XP_003453609.1| PREDICTED: LIM/homeobox protein Lhx1-like [Oreochromis niloticus]
Length = 407
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 57/104 (54%), Gaps = 6/104 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH C++C C C L E + + + CK D+ R FGT C C++ I +
Sbjct: 20 LDRAWHVKCVQCCECKCNLTE---KCFSREGRLYCKNDFFRRFGTK--CGGCSQGISPND 74
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 104
+V RA++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 75 LVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKDDY 118
>gi|124013499|gb|ABM87992.1| LHX6 [Macaca nemestrina]
Length = 198
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 87 NLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIXCKMDYFSRFGTK--CARCGRQIYASDW 143
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CFAC C + G+ F L + K+LC Y+
Sbjct: 144 VRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYD 186
>gi|194758260|ref|XP_001961380.1| GF13843 [Drosophila ananassae]
gi|190622678|gb|EDV38202.1| GF13843 [Drosophila ananassae]
Length = 469
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 40/104 (38%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A++ WH CL+C C L E S+ Y + I CK DY FGT C+ C I +
Sbjct: 163 AVEKRWHASCLQCYACRQPL-ERESSCYSRDGNIYCKNDYYSFFGTR-RCSRCLASISSN 220
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 104
E+VMRA+N V+H+ CF C C+ GD++ + D I C Y
Sbjct: 221 ELVMRARNLVFHVNCFCCTVCHTPLTKGDQYGIIDALIYCRTHY 264
>gi|307200797|gb|EFN80850.1| LIM/homeobox protein Lhx3 [Harpegnathos saltator]
Length = 421
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 77/154 (50%), Gaps = 11/154 (7%)
Query: 6 WHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMR 65
WH CL C C RL + + + + C+ D+ + FGT CA C++ + ++V R
Sbjct: 108 WHARCLTCRDCGARLTD---KCFARNGHVFCREDFFKRFGTK--CAGCSQGLSPSQVVRR 162
Query: 66 AKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYEERQVFCVGDRFYL---CDN 121
A+ VYHL CF+C C+ + GD FYL D K++C+ DYE+ + + D + N
Sbjct: 163 AQELVYHLTCFSCALCSRQLDTGDEFYLMEDRKLVCKPDYEQAKAKELADGGSIDGDQPN 222
Query: 122 KILCEYDYEERQVFANIAYN--PSSLAHLRRQVT 153
K ++ +AYN P H+R Q++
Sbjct: 223 KRPRTTITAKQLETLKLAYNTSPKPARHVREQLS 256
>gi|258504095|gb|ACV72753.1| LIN-11 [Caenorhabditis remanei]
gi|258504097|gb|ACV72754.1| LIN-11 [Caenorhabditis remanei]
gi|258504103|gb|ACV72757.1| LIN-11 [Caenorhabditis remanei]
gi|258504107|gb|ACV72759.1| LIN-11 [Caenorhabditis remanei]
gi|258504109|gb|ACV72760.1| LIN-11 [Caenorhabditis remanei]
gi|258504111|gb|ACV72761.1| LIN-11 [Caenorhabditis remanei]
gi|258504117|gb|ACV72764.1| LIN-11 [Caenorhabditis remanei]
gi|258504119|gb|ACV72765.1| LIN-11 [Caenorhabditis remanei]
Length = 383
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 66/133 (49%), Gaps = 7/133 (5%)
Query: 6 WHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMR 65
WH+ CL+C CDCR + T + K LILCK DY R +G CA C + ++V R
Sbjct: 83 WHQSCLRC--CDCR-APMSMTCFSKDGLILCKTDYSRRYG--HRCAGCDGKLEKEDLVRR 137
Query: 66 AKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDYEERQVFCVGDRFY-LCDNKI 123
A++ V+H+ CF C C GD+ Y+ + N+ +C+ D++ + N
Sbjct: 138 ARDKVFHIRCFQCSVCQRLLDTGDQLYIMEGNRFMCQNDFQTATKTSTPTSMHRPISNGS 197
Query: 124 LCEYDYEERQVFA 136
C D EE V A
Sbjct: 198 ECNSDMEEDAVDA 210
>gi|157137277|ref|XP_001663968.1| arrowhead [Aedes aegypti]
gi|108869746|gb|EAT33971.1| AAEL013763-PA, partial [Aedes aegypti]
Length = 211
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 58/101 (57%), Gaps = 3/101 (2%)
Query: 6 WHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMR 65
WH CL+C C C L E + Y K + CK DY++ F + CA C++ I + V R
Sbjct: 33 WHGSCLRCSICYCSL-ERQVSCYFKDGEVYCKTDYIKKFKAS--CAKCSRSISPSDWVRR 89
Query: 66 AKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
A++ V+HL CFAC C + G++F + D+++LC+ Y E
Sbjct: 90 ARDFVFHLACFACDSCGRQLSTGEQFAIIDDRVLCKTHYME 130
>gi|126306172|ref|XP_001363612.1| PREDICTED: LIM homeobox transcription factor 1-alpha [Monodelphis
domestica]
Length = 382
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 61/111 (54%), Gaps = 6/111 (5%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
D FWHE C++C C L +T + + + CK DY +LF C C + I E
Sbjct: 52 DSFWHEQCVQCASCKEPLE---TTCFYRDKKLYCKYDYEKLFAVK--CGGCFEAIAPNEF 106
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE-ERQVFCV 112
VMRA+ +VYHL CF C C + GD F L + ++LC+ DYE ER++ +
Sbjct: 107 VMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKERELLSL 157
>gi|119616776|gb|EAW96370.1| LIM domain only 3 (rhombotin-like 2), isoform CRA_a [Homo sapiens]
gi|119616779|gb|EAW96373.1| LIM domain only 3 (rhombotin-like 2), isoform CRA_a [Homo sapiens]
gi|119616780|gb|EAW96374.1| LIM domain only 3 (rhombotin-like 2), isoform CRA_a [Homo sapiens]
Length = 57
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/45 (75%), Positives = 40/45 (88%)
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
MVMRAK+NVYHL+CFACQ CN RFCVGD+F+L +N ILC+ DYEE
Sbjct: 1 MVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEE 45
>gi|308485364|ref|XP_003104881.1| CRE-LIN-11 protein [Caenorhabditis remanei]
gi|308257579|gb|EFP01532.1| CRE-LIN-11 protein [Caenorhabditis remanei]
Length = 415
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 66/133 (49%), Gaps = 7/133 (5%)
Query: 6 WHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMR 65
WH+ CL+C CDCR + T + K LILCK DY R +G CA C + ++V R
Sbjct: 98 WHQSCLRC--CDCR-APMSMTCFSKDGLILCKTDYSRRYG--HRCAGCDGKLEKEDLVRR 152
Query: 66 AKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDYEERQVFCVGDRFY-LCDNKI 123
A++ V+H+ CF C C GD+ Y+ + N+ +C+ D++ + N
Sbjct: 153 ARDKVFHIRCFQCSVCQRLLDTGDQLYIMEGNRFMCQNDFQTATKTSTPTSMHRPISNGS 212
Query: 124 LCEYDYEERQVFA 136
C D EE V A
Sbjct: 213 ECNSDMEEDAVDA 225
>gi|18858977|ref|NP_571293.1| LIM/homeobox protein Lhx5 [Danio rerio]
gi|1708830|sp|P52889.1|LHX5_DANRE RecName: Full=LIM/homeobox protein Lhx5; Short=LIM homeobox protein
5; AltName: Full=Homeobox protein LIM-5
gi|840664|gb|AAA99465.1| LIM class homeodomain protein [Danio rerio]
gi|68534671|gb|AAH98523.1| LIM homeobox 5 [Danio rerio]
Length = 399
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 58/104 (55%), Gaps = 6/104 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH C++C C+C L E + + + CK D+ R FGT CA C + I +
Sbjct: 21 LDRAWHAKCVQCCECNCNLTE---KCFSRDGKLYCKIDFFRRFGTK--CAGCLQGISPSD 75
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 104
+V RA++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 76 LVRRARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKEDY 119
>gi|258504089|gb|ACV72750.1| LIN-11 [Caenorhabditis remanei]
gi|258504091|gb|ACV72751.1| LIN-11 [Caenorhabditis remanei]
gi|258504093|gb|ACV72752.1| LIN-11 [Caenorhabditis remanei]
gi|258504099|gb|ACV72755.1| LIN-11 [Caenorhabditis remanei]
gi|258504113|gb|ACV72762.1| LIN-11 [Caenorhabditis remanei]
gi|258504115|gb|ACV72763.1| LIN-11 [Caenorhabditis remanei]
Length = 383
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 66/133 (49%), Gaps = 7/133 (5%)
Query: 6 WHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMR 65
WH+ CL+C CDCR + T + K LILCK DY R +G CA C + ++V R
Sbjct: 83 WHQSCLRC--CDCR-APMSMTCFSKDGLILCKTDYSRRYG--HRCAGCDGKLEKEDLVRR 137
Query: 66 AKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDYEERQVFCVGDRFY-LCDNKI 123
A++ V+H+ CF C C GD+ Y+ + N+ +C+ D++ + N
Sbjct: 138 ARDKVFHIRCFQCSVCQRLLDTGDQLYIMEGNRFMCQNDFQTATKTSTPTSMHRPISNGS 197
Query: 124 LCEYDYEERQVFA 136
C D EE V A
Sbjct: 198 ECNSDMEEDAVDA 210
>gi|395530698|ref|XP_003767425.1| PREDICTED: LIM homeobox transcription factor 1-alpha [Sarcophilus
harrisii]
Length = 382
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 61/111 (54%), Gaps = 6/111 (5%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
D FWHE C++C C L +T + + + CK DY +LF C C + I E
Sbjct: 52 DSFWHEQCVQCASCKEPLE---TTCFYRDKKLYCKYDYEKLFAVK--CGGCFEAIAPNEF 106
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE-ERQVFCV 112
VMRA+ +VYHL CF C C + GD F L + ++LC+ DYE ER++ +
Sbjct: 107 VMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKERELLSL 157
>gi|258504101|gb|ACV72756.1| LIN-11 [Caenorhabditis remanei]
gi|258504105|gb|ACV72758.1| LIN-11 [Caenorhabditis remanei]
Length = 383
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 66/133 (49%), Gaps = 7/133 (5%)
Query: 6 WHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMR 65
WH+ CL+C CDCR + T + K LILCK DY R +G CA C + ++V R
Sbjct: 83 WHQSCLRC--CDCR-APMSMTCFSKDGLILCKTDYSRRYG--HRCAGCDGKLEKEDLVRR 137
Query: 66 AKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDYEERQVFCVGDRFY-LCDNKI 123
A++ V+H+ CF C C GD+ Y+ + N+ +C+ D++ + N
Sbjct: 138 ARDKVFHIRCFQCSVCQRLLDTGDQLYIMEGNRFMCQNDFQTATKTSTPTSMHRPISNGS 197
Query: 124 LCEYDYEERQVFA 136
C D EE V A
Sbjct: 198 ECNSDMEEDAVDA 210
>gi|410908008|ref|XP_003967483.1| PREDICTED: insulin gene enhancer protein ISL-2A-like [Takifugu
rubripes]
Length = 359
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 58/104 (55%), Gaps = 3/104 (2%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+ DL WH CLKC C L E T + + CKRDY RLFG CA C +
Sbjct: 43 SPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDYARLFGIK--CAKCNMGFCSS 99
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 104
++VMRA+++VYH+ECF C C GD F L ++++LC D+
Sbjct: 100 DLVMRARDSVYHMECFRCSVCCRHLLPGDEFSLREDELLCRADH 143
>gi|47214973|emb|CAG01307.1| unnamed protein product [Tetraodon nigroviridis]
Length = 396
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 58/106 (54%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CL+C C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 68 AVDKQWHMRCLRC--CECKLHLESELTCFSKDGSIYCKEDYYRRF-SVQRCARCHLGISA 124
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA++ VYHL CF C C+ GD F + D+ + C +E
Sbjct: 125 SEMVMRARDLVYHLNCFTCTTCSKMLTTGDHFGMKDSLVYCRLHFE 170
>gi|170034020|ref|XP_001844873.1| arrowhead [Culex quinquefasciatus]
gi|167875281|gb|EDS38664.1| arrowhead [Culex quinquefasciatus]
Length = 304
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 55/101 (54%), Gaps = 3/101 (2%)
Query: 6 WHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMR 65
WH CL+C C L + S + + I CK DY FG CA C++ I A + V R
Sbjct: 30 WHSACLRCCICHTPLDQQPS-CFLRDRQIYCKADYASTFGAK--CARCSRSISASDWVRR 86
Query: 66 AKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
A+ ++HL CFAC C + G++F L D+K+LC+ Y E
Sbjct: 87 ARKMIFHLACFACDSCGRQLSTGEQFALADDKVLCKKHYSE 127
>gi|117645548|emb|CAL38240.1| hypothetical protein [synthetic construct]
Length = 363
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 53/103 (51%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S Y K I CK DY FGT CA C + I A +
Sbjct: 87 NLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFGTK--CARCGRQIYASDW 143
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ N YHL CF C C + G+ F L + K+LC Y+
Sbjct: 144 VRRARGNAYHLACFTCFSCKRQLSTGEEFGLVEEKVLCRIHYD 186
>gi|431916082|gb|ELK16336.1| LIM homeobox transcription factor 1-alpha [Pteropus alecto]
Length = 374
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 60/111 (54%), Gaps = 6/111 (5%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
D FWHE+C++C C L +T + + + CK DY +LF C C + I E
Sbjct: 44 DSFWHEECVQCASCKEPLE---TTCFYRDKKLYCKCDYEKLFAVK--CGGCFEAIAPNEF 98
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE-ERQVFCV 112
VMRA+ VYHL CF C C + GD F L D ++LC DYE ER++ +
Sbjct: 99 VMRAQKTVYHLGCFCCCVCERQLQKGDEFVLKDGQLLCRGDYEKERELLSL 149
>gi|319740961|gb|ADV69000.1| lim-homeobox 2/9 [Patiria miniata]
Length = 304
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 57/107 (53%), Gaps = 4/107 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A D WH +CL+C C+C++ + T + K I CK Y R FG CA C I A
Sbjct: 63 AADQQWHTECLRC--CECKVTLDNELTCFAKDGGIYCKEHYFRRFGVK-KCARCGTGIAA 119
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EMVMRA++ VYHL CF C C+ GD + + D ++ C YE
Sbjct: 120 HEMVMRARSLVYHLSCFTCSACSMALTTGDYYGMRDTQVYCRLHYES 166
>gi|301756737|ref|XP_002914217.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like
[Ailuropoda melanoleuca]
Length = 382
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 61/111 (54%), Gaps = 6/111 (5%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
D FWHE C++C C L +T + + + CK DY +LF C C + + E
Sbjct: 52 DSFWHEQCVQCASCKEPLE---TTCFYRDKKLYCKYDYEKLFAVK--CGGCFEAVAPNEF 106
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE-ERQVFCV 112
VMRA+ +VYHL CF C C + GD F L + ++LC+ DYE ER++ +
Sbjct: 107 VMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKERELLSL 157
>gi|50253600|gb|AAT72002.1| isl1, partial [Xenopus (Silurana) tropicalis]
Length = 268
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 60/116 (51%), Gaps = 5/116 (4%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+ DL WH CLKC C L E T + + CKRDY+RL+G CA C
Sbjct: 33 SPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDYIRLYGIK--CAKCNIGFSKN 89
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE--ERQVFCVGD 114
+ VMRA++ VYH+ECF C C+ + GD F L ++ + C D++ ER D
Sbjct: 90 DFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVVERASLGASD 145
>gi|281348858|gb|EFB24442.1| hypothetical protein PANDA_002084 [Ailuropoda melanoleuca]
Length = 368
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 61/111 (54%), Gaps = 6/111 (5%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
D FWHE C++C C L +T + + + CK DY +LF C C + + E
Sbjct: 38 DSFWHEQCVQCASCKEPLE---TTCFYRDKKLYCKYDYEKLFAVK--CGGCFEAVAPNEF 92
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE-ERQVFCV 112
VMRA+ +VYHL CF C C + GD F L + ++LC+ DYE ER++ +
Sbjct: 93 VMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKERELLSL 143
>gi|334327218|ref|XP_001378455.2| PREDICTED: LIM/homeobox protein Lhx5-like [Monodelphis domestica]
Length = 303
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 57/104 (54%), Gaps = 6/104 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH C++C C C L E + + + CK D+ R FGT CA C + I +
Sbjct: 21 LDRAWHIKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRRFGTK--CAGCAQGISPSD 75
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 104
+V +A++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 76 LVRKARSKVFHLNCFTCMVCNKQLSTGEELYIIDENKFVCKEDY 119
>gi|332025538|gb|EGI65701.1| LIM domain transcription factor LMO4.1 [Acromyrmex echinatior]
Length = 179
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 43/64 (67%)
Query: 43 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEY 102
+FG++G C +C IPA EMVMRA ++V+H++CF C +C + GDR+YL +CE
Sbjct: 1 MFGSSGVCGSCGNAIPANEMVMRAGDSVFHVKCFNCNKCGGQLVSGDRYYLLSGSPICES 60
Query: 103 DYEE 106
D+ +
Sbjct: 61 DWHK 64
>gi|183985542|gb|AAI66037.1| isl1 protein [Xenopus (Silurana) tropicalis]
Length = 335
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 60/116 (51%), Gaps = 5/116 (4%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+ DL WH CLKC C L E T + + CKRDY+RL+G CA C
Sbjct: 33 SPDLEWHAACLKCAECSQYLDET-CTCFVRDGKTYCKRDYIRLYGIK--CAKCNIGFSKN 89
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE--ERQVFCVGD 114
+ VMRA++ VYH+ECF C C+ + GD F L ++ + C D++ ER D
Sbjct: 90 DFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVVERASLGASD 145
>gi|124377604|dbj|BAF46219.1| LIM homeobox gene 9 delta protein [Glandirana rugosa]
Length = 312
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 57/106 (53%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 68 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 124
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
E+VMRA+ +VYHL CF C CN GD F + +N + +E
Sbjct: 125 SEIVMRARESVYHLSCFTCTXCNKTLSTGDHFGMKENLVYRRAHFE 170
>gi|224493106|sp|A2PZF9.1|LHX9_RANRU RecName: Full=LIM/homeobox protein Lhx9; Short=LIM homeobox protein
9
gi|124377598|dbj|BAF46216.1| LIM homeobox gene 9 alpha protein [Glandirana rugosa]
Length = 379
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 57/106 (53%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 68 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 124
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
E+VMRA+ +VYHL CF C CN GD F + +N + +E
Sbjct: 125 SEIVMRARESVYHLSCFTCTTCNKTLSTGDHFGMKENLVYRRAHFE 170
>gi|327282632|ref|XP_003226046.1| PREDICTED: LIM/homeobox protein Lhx5-like [Anolis carolinensis]
Length = 400
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 56/104 (53%), Gaps = 6/104 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH C++C C C L E + + + CK D+ R FGT CA C + I +
Sbjct: 21 LDRAWHIKCVQCCECKCNLTE---KCFSREGKLYCKNDFFRRFGTK--CAGCAQGISPSD 75
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 104
+V +A+ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 76 LVRKARGKVFHLNCFTCMVCNKQLSTGEELYIIDENKFVCKEDY 119
>gi|124377606|dbj|BAF46220.1| LIM homeobox gene 9 epsilon protein [Glandirana rugosa]
Length = 297
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 57/106 (53%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 68 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 124
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
E+VMRA+ +VYHL CF C CN GD F + +N + +E
Sbjct: 125 SEIVMRARESVYHLSCFTCTXCNKTLSTGDHFGMKENLVYRRAHFE 170
>gi|301609265|ref|XP_002934210.1| PREDICTED: LIM homeobox transcription factor 1-alpha-like [Xenopus
(Silurana) tropicalis]
Length = 380
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 58/111 (52%), Gaps = 6/111 (5%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
D WHE C +C C C+ S Y+ L C+ DY +LF C C I E
Sbjct: 52 DSLWHEQCAQC--CTCKEPLESSCFYRDKKL-YCRNDYEKLFAVK--CGTCLDTITPSEF 106
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE-ERQVFCV 112
VMRA+ NVYHL CF C C+ + GD F L D ++LC+ DYE ER + +
Sbjct: 107 VMRAQKNVYHLGCFCCCVCDRQLQKGDEFVLKDGQLLCKSDYERERDLLSL 157
>gi|124377600|dbj|BAF46217.1| LIM homeobox gene 9 beta protein [Glandirana rugosa]
Length = 347
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 44/97 (45%), Positives = 54/97 (55%), Gaps = 4/97 (4%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 68 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 124
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDN 96
E+VMRA+ +VYHL CF C CN GD F + +N
Sbjct: 125 SEIVMRARESVYHLSCFTCTTCNKTLSTGDHFGMKEN 161
>gi|444730606|gb|ELW70984.1| LIM homeobox transcription factor 1-alpha [Tupaia chinensis]
Length = 265
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 61/111 (54%), Gaps = 6/111 (5%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
D FWHE C++C C L +T + + + CK DY +LF C C + I E
Sbjct: 52 DSFWHEQCVQCASCKEPLE---TTCFYRDKKLYCKFDYEKLFAVK--CGGCFEAIAPNEF 106
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE-ERQVFCV 112
VMRA+ +VYHL CF C C + GD F L + ++LC+ DYE ER++ +
Sbjct: 107 VMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDYEKERELLSL 157
>gi|160420135|ref|NP_001104188.1| ISL LIM homeobox 1 [Xenopus laevis]
gi|115528275|gb|AAI24895.1| LOC100126604 protein [Xenopus laevis]
gi|144952770|gb|ABP04039.1| islet-1 [Xenopus laevis]
gi|213626865|gb|AAI70282.1| Islet-1 [Xenopus laevis]
Length = 354
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 57/105 (54%), Gaps = 3/105 (2%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+ DL WH CLKC C L E T + + CKRDY+RL+G CA C
Sbjct: 33 SPDLEWHAACLKCAECSQYLDE-SCTCFVRDGKTYCKRDYIRLYGIK--CAKCNIGFSKN 89
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
+ VMRA++ VYH+ECF C C+ + GD F L ++ + C D++
Sbjct: 90 DFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHD 134
>gi|124377602|dbj|BAF46218.1| LIM homeobox gene 9 gamma protein [Glandirana rugosa]
Length = 331
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 57/106 (53%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK DY R F + CA C I A
Sbjct: 68 AVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRF-SVQRCARCHLGISA 124
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
E+VMRA+ +VYHL CF C CN GD F + +N + +E
Sbjct: 125 SEIVMRARESVYHLSCFTCTTCNKTLSTGDHFGMKENLVYRRAHFE 170
>gi|88954018|gb|ABD59002.1| LIM-homeodomain protein AmphiLim1/5 [Branchiostoma floridae]
Length = 464
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 58/101 (57%), Gaps = 6/101 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH C++C C CRL E + + + + C+ D+ R FGT CA CT+ I +
Sbjct: 21 LDRAWHAKCVRCSDCSCRLTE---KCFTRDSKLYCREDFFRRFGTK--CAGCTQGILPND 75
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCE 101
+V RA+N V+HL+CF C C + G+ ++ D+K +C+
Sbjct: 76 LVRRARNKVFHLKCFTCAACAKQMATGEELFVVDDDKFICK 116
>gi|383858395|ref|XP_003704687.1| PREDICTED: LIM/homeobox protein Lhx3-like [Megachile rotundata]
Length = 463
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 76/154 (49%), Gaps = 11/154 (7%)
Query: 6 WHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMR 65
WH CL C C RL + + + + CK D+ + FGT CA C + + ++V R
Sbjct: 111 WHARCLTCRDCGARLTD---KCFARNGHVFCKDDFFKRFGTK--CAGCGQGLAPSQVVRR 165
Query: 66 AKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYEERQVFCVGDRFYL---CDN 121
A+ VYHL CF+C C+ + GD FYL D K++C+ DYE+ + + D + N
Sbjct: 166 AQELVYHLTCFSCALCSRQLDTGDEFYLMEDRKLVCKPDYEQAKAKELADGGSIDGDQPN 225
Query: 122 KILCEYDYEERQVFANIAYN--PSSLAHLRRQVT 153
K ++ +AYN P H+R Q++
Sbjct: 226 KRPRTTITAKQLETLKLAYNTSPKPARHVREQLS 259
>gi|432885359|ref|XP_004074682.1| PREDICTED: LIM/homeobox protein Lhx5-like [Oryzias latipes]
Length = 396
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 58/104 (55%), Gaps = 6/104 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH C++C C+C L E + + + CK D+ R FGT CA C + I +
Sbjct: 21 LDRAWHAKCVQCCDCNCNLTE---KCFSRDGKLYCKMDFFRRFGTK--CAGCLQGISPND 75
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY 104
+V +A++ V+HL CF C CN + G+ Y+ D NK +C+ DY
Sbjct: 76 LVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCKEDY 119
>gi|322793254|gb|EFZ16911.1| hypothetical protein SINV_14186 [Solenopsis invicta]
Length = 392
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 76/154 (49%), Gaps = 11/154 (7%)
Query: 6 WHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMR 65
WH CL C C RL + + + + CK D+ + FGT CA C + + ++V R
Sbjct: 26 WHARCLTCRDCGARLTD---KCFARNGHVFCKDDFFKRFGTK--CAGCGQGLAPSQVVRR 80
Query: 66 AKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYEERQVFCVGDRFYL---CDN 121
A+ VYHL CF+C C+ + GD FYL D K++C+ DYE+ + + D + N
Sbjct: 81 AQEFVYHLTCFSCALCSRQLDTGDEFYLMEDRKLVCKPDYEQAKAKELADGGSIDGDQPN 140
Query: 122 KILCEYDYEERQVFANIAYN--PSSLAHLRRQVT 153
K ++ +AYN P H+R Q++
Sbjct: 141 KRPRTTITAKQLETLKLAYNTSPKPARHVREQLS 174
>gi|125823566|ref|XP_001339831.1| PREDICTED: LIM/homeobox protein Lhx8-like [Danio rerio]
Length = 356
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 53/104 (50%), Gaps = 3/104 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
D+ WH CL C C L E +T Y + I CK Y R F T +C+ C + + + +
Sbjct: 103 DMCWHARCLSCSVCQTTLSE-QTTCYVREREIFCKLHYFRRFQT--WCSCCRETLHSSDW 159
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
V RAK NVYHL CF+C C + G+ F L K+LC Y
Sbjct: 160 VHRAKGNVYHLACFSCFSCKRQLSTGEEFALVGEKLLCRIHYSS 203
>gi|241688400|ref|XP_002401762.1| lim-only, putative [Ixodes scapularis]
gi|215504535|gb|EEC14029.1| lim-only, putative [Ixodes scapularis]
Length = 87
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 45/63 (71%)
Query: 41 LRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILC 100
L LFGT+G C+ C ++IPA + VMRA NVYH++CFAC +C+ + GDR+ L + +LC
Sbjct: 2 LWLFGTSGACSGCGQMIPANDYVMRAAQNVYHVKCFACVKCHSQLVPGDRYNLVNGSVLC 61
Query: 101 EYD 103
E D
Sbjct: 62 EQD 64
>gi|391342697|ref|XP_003745652.1| PREDICTED: LIM/homeobox protein Lhx1-like [Metaseiulus
occidentalis]
Length = 363
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 74/163 (45%), Gaps = 17/163 (10%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
LD WH C++C C C L E + + + C+ D+ + FGT CA C + I +
Sbjct: 22 LDRSWHAKCVQCSDCRCSLSE---KCFSRDGKLFCRSDFYKRFGTK--CAGCAQGISPTD 76
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD-NKILCEYDY--EERQVFCVGDRFYL 118
+V RA++ V+HL+CF C C + G+ Y+ D N+ +C+ DY + +Q + +
Sbjct: 77 LVRRARSKVFHLKCFTCLVCRKQLSTGEELYVLDENRFICKEDYLNQRQQGSGPESQMNV 136
Query: 119 CDNKILCEYDYEERQVF---------ANIAYNPSSLAHLRRQV 152
D+ + R A A P H+R Q+
Sbjct: 137 ADDGNGSQKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQL 179
>gi|432872837|ref|XP_004072149.1| PREDICTED: LIM/homeobox protein Lhx6-like [Oryzias latipes]
Length = 346
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 3 DLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEM 62
+L WH CL+C C L + S+ Y K I CK DY FGT CA C + + A +
Sbjct: 85 NLNWHLGCLECSVCRASLHQ-HSSCYVKNKEIYCKLDYFSRFGTK--CAQCGRQVYASDW 141
Query: 63 VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
V RA+ +VYHL CFAC C + G+ F L + ++LC Y+
Sbjct: 142 VRRARGSVYHLACFACFSCKRQLSTGEEFGLVEGRVLCRSHYD 184
>gi|76667074|dbj|BAE45356.1| LIM homeodomain type transcription factor Lhx2 [Danio rerio]
Length = 395
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 57/106 (53%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLG-EVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A+D WH CLKC C+C+L E T + K I CK +Y R F + CA C I A
Sbjct: 68 AVDKQWHMRCLKC--CECKLNLESELTCFDKDGSIYCKEEYYRRF-SVQRCARCHLGISA 124
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
EMVMRA++ VYHL CF C CN GD + D+ + C +E
Sbjct: 125 SEMVMRARDLVYHLNCFTCTTCNKMLTTGDHVGMKDSLVYCRLHFE 170
>gi|307166312|gb|EFN60494.1| LIM/homeobox protein Lhx9 [Camponotus floridanus]
Length = 487
Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 41/106 (38%), Positives = 53/106 (50%), Gaps = 4/106 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGS-TLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59
A D WH CL+C C CR+ T + + I CK DY RLF + C+ C I A
Sbjct: 152 AADRAWHCGCLRC--CHCRVPLAAELTCFARDGNIYCKEDYYRLFAVS-RCSRCRAGISA 208
Query: 60 FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
E+VMRA++ VYH+ CF C C GD F + + C YE
Sbjct: 209 SELVMRARDLVYHVACFTCASCGTPLNKGDHFGQRNGLVYCRPHYE 254
>gi|198469300|ref|XP_001354984.2| GA10943 [Drosophila pseudoobscura pseudoobscura]
gi|198146805|gb|EAL32040.2| GA10943 [Drosophila pseudoobscura pseudoobscura]
Length = 528
Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 33/104 (31%), Positives = 58/104 (55%), Gaps = 6/104 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
L+ WH C++C C+C L + + + + + C+ D+ R +GT C+ C + I +
Sbjct: 43 LERAWHASCVRC--CEC-LQPLTDKCFSRESKLYCRNDFFRRYGTK--CSGCGQGIAPSD 97
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFY-LCDNKILCEYDY 104
+V + ++ V+HL CF C C + G++ Y L DNK +C+ DY
Sbjct: 98 LVRKPRDKVFHLNCFTCCICRKQLSTGEQLYVLDDNKFICKDDY 141
>gi|195480019|ref|XP_002101106.1| GE17432 [Drosophila yakuba]
gi|194188630|gb|EDX02214.1| GE17432 [Drosophila yakuba]
Length = 500
Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 33/104 (31%), Positives = 58/104 (55%), Gaps = 6/104 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
L+ WH C++C C+C L + + + + + C+ D+ R +GT C+ C + I +
Sbjct: 43 LERAWHASCVRC--CEC-LQPLTDKCFSRESKLYCRNDFFRRYGTK--CSGCGQGIAPSD 97
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFY-LCDNKILCEYDY 104
+V + ++ V+HL CF C C + G++ Y L DNK +C+ DY
Sbjct: 98 LVRKPRDKVFHLNCFTCCICRKQLSTGEQLYVLDDNKFICKDDY 141
>gi|195456664|ref|XP_002075233.1| GK16904 [Drosophila willistoni]
gi|194171318|gb|EDW86219.1| GK16904 [Drosophila willistoni]
Length = 506
Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 33/104 (31%), Positives = 58/104 (55%), Gaps = 6/104 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
L+ WH C++C C+C L + + + + + C+ D+ R +GT C+ C + I +
Sbjct: 43 LERAWHASCVRC--CEC-LQPLTDKCFSRESKLYCRNDFFRRYGTK--CSGCGQGIAPSD 97
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFY-LCDNKILCEYDY 104
+V + ++ V+HL CF C C + G++ Y L DNK +C+ DY
Sbjct: 98 LVRKPRDKVFHLNCFTCCICRKQLSTGEQLYVLDDNKFICKDDY 141
>gi|195400977|ref|XP_002059092.1| GJ15180 [Drosophila virilis]
gi|194141744|gb|EDW58161.1| GJ15180 [Drosophila virilis]
Length = 498
Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 33/104 (31%), Positives = 58/104 (55%), Gaps = 6/104 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
L+ WH C++C C+C L + + + + + C+ D+ R +GT C+ C + I +
Sbjct: 43 LERAWHASCVRC--CEC-LQPLTDKCFSRESKLYCRNDFFRRYGTK--CSGCGQGIAPSD 97
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFY-LCDNKILCEYDY 104
+V + ++ V+HL CF C C + G++ Y L DNK +C+ DY
Sbjct: 98 LVRKPRDKVFHLNCFTCCICRKQLSTGEQLYVLDDNKFICKDDY 141
>gi|195130757|ref|XP_002009817.1| GI15570 [Drosophila mojavensis]
gi|193908267|gb|EDW07134.1| GI15570 [Drosophila mojavensis]
Length = 503
Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 33/104 (31%), Positives = 58/104 (55%), Gaps = 6/104 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
L+ WH C++C C+C L + + + + + C+ D+ R +GT C+ C + I +
Sbjct: 43 LERAWHASCVRC--CEC-LQPLTDKCFSRESKLYCRNDFFRRYGTK--CSGCGQGIAPSD 97
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFY-LCDNKILCEYDY 104
+V + ++ V+HL CF C C + G++ Y L DNK +C+ DY
Sbjct: 98 LVRKPRDKVFHLNCFTCCICRKQLSTGEQLYVLDDNKFICKDDY 141
>gi|195049216|ref|XP_001992673.1| GH24084 [Drosophila grimshawi]
gi|193893514|gb|EDV92380.1| GH24084 [Drosophila grimshawi]
Length = 501
Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 33/104 (31%), Positives = 58/104 (55%), Gaps = 6/104 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
L+ WH C++C C+C L + + + + + C+ D+ R +GT C+ C + I +
Sbjct: 43 LERAWHASCVRC--CEC-LQPLTDKCFSRESKLYCRNDFFRRYGTK--CSGCGQGIAPSD 97
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFY-LCDNKILCEYDY 104
+V + ++ V+HL CF C C + G++ Y L DNK +C+ DY
Sbjct: 98 LVRKPRDKVFHLNCFTCCICRKQLSTGEQLYVLDDNKFICKDDY 141
>gi|194890894|ref|XP_001977402.1| GG19023 [Drosophila erecta]
gi|190649051|gb|EDV46329.1| GG19023 [Drosophila erecta]
Length = 504
Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 33/104 (31%), Positives = 58/104 (55%), Gaps = 6/104 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
L+ WH C++C C+C L + + + + + C+ D+ R +GT C+ C + I +
Sbjct: 43 LERAWHASCVRC--CEC-LQPLTDKCFSRESKLYCRNDFFRRYGTK--CSGCGQGIAPSD 97
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFY-LCDNKILCEYDY 104
+V + ++ V+HL CF C C + G++ Y L DNK +C+ DY
Sbjct: 98 LVRKPRDKVFHLNCFTCCICRKQLSTGEQLYVLDDNKFICKDDY 141
>gi|194769270|ref|XP_001966729.1| GF19125 [Drosophila ananassae]
gi|190618250|gb|EDV33774.1| GF19125 [Drosophila ananassae]
Length = 500
Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 33/104 (31%), Positives = 58/104 (55%), Gaps = 6/104 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
L+ WH C++C C+C L + + + + + C+ D+ R +GT C+ C + I +
Sbjct: 43 LERAWHASCVRC--CEC-LQPLTDKCFSRESKLYCRNDFFRRYGTK--CSGCGQGIAPSD 97
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFY-LCDNKILCEYDY 104
+V + ++ V+HL CF C C + G++ Y L DNK +C+ DY
Sbjct: 98 LVRKPRDKVFHLNCFTCCICRKQLSTGEQLYVLDDNKFICKDDY 141
>gi|18858205|ref|NP_572505.1| Lim1, isoform A [Drosophila melanogaster]
gi|39841014|gb|AAD55417.2|AF181631_1 GH04929p [Drosophila melanogaster]
gi|6252420|dbj|BAA86224.1| dLim1 [Drosophila melanogaster]
gi|22833027|gb|AAF46413.2| Lim1, isoform A [Drosophila melanogaster]
gi|220943666|gb|ACL84376.1| Lim1-PA [synthetic construct]
gi|220953602|gb|ACL89344.1| Lim1-PA [synthetic construct]
Length = 505
Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 33/104 (31%), Positives = 58/104 (55%), Gaps = 6/104 (5%)
Query: 2 LDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFE 61
L+ WH C++C C+C L + + + + + C+ D+ R +GT C+ C + I +
Sbjct: 43 LERAWHASCVRC--CEC-LQPLTDKCFSRESKLYCRNDFFRRYGTK--CSGCGQGIAPSD 97
Query: 62 MVMRAKNNVYHLECFACQQCNHRFCVGDRFY-LCDNKILCEYDY 104
+V + ++ V+HL CF C C + G++ Y L DNK +C+ DY
Sbjct: 98 LVRKPRDKVFHLNCFTCCICRKQLSTGEQLYVLDDNKFICKDDY 141
>gi|332023208|gb|EGI63464.1| Insulin gene enhancer protein ISL-1 [Acromyrmex echinatior]
Length = 432
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 60/115 (52%), Gaps = 5/115 (4%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A +L WH CLKC C L E T + + CKRDY+RLFGT C C++
Sbjct: 45 APNLEWHAACLKCAECQQFLDEK-CTCFVRDGKTYCKRDYVRLFGTK--CDKCSRCFSKN 101
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE--ERQVFCVG 113
+ VMRAK +YH+ECF C C+ R GD F L + + C D++ E C G
Sbjct: 102 DYVMRAKTKIYHVECFRCCACSRRLETGDEFALRQDGLFCRLDHDVLEGGKHCTG 156
>gi|345132129|gb|AEN75257.1| apterous [Neanthes arenaceodentata]
Length = 420
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D WH +CLKC C L + T + K I CK DY R F C+ C + I A
Sbjct: 76 AVDKQWHINCLKCADCHLPL-DSELTCFAKDGEIFCKEDYYRRFAVK-RCSRCHQAISAN 133
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
E+VMRA+ +V+H+ CF C C+ GD F + D+ I C YE
Sbjct: 134 ELVMRAREHVFHIGCFTCASCSKALTTGDYFGMKDHLIYCRSHYE 178
>gi|350418514|ref|XP_003491882.1| PREDICTED: LIM/homeobox protein Lhx3-like [Bombus impatiens]
Length = 463
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 76/154 (49%), Gaps = 11/154 (7%)
Query: 6 WHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMR 65
WH CL C C RL + + + + CK D+ + FGT CA C + + ++V R
Sbjct: 111 WHARCLTCRDCGARLTD---KCFARNGHVFCKDDFFKRFGTK--CAGCGQGLAPSQVVRR 165
Query: 66 AKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYEERQVFCVGDRFYL---CDN 121
A+ +YHL CF+C C+ + GD FYL D K++C+ DYE+ + + D + N
Sbjct: 166 AQELIYHLTCFSCALCSRQLDTGDEFYLMEDRKLVCKPDYEQAKAKELADGGSIDGDQPN 225
Query: 122 KILCEYDYEERQVFANIAYN--PSSLAHLRRQVT 153
K ++ +AYN P H+R Q++
Sbjct: 226 KRPRTTITAKQLETLKLAYNTSPKPARHVREQLS 259
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.331 0.144 0.496
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,444,775,384
Number of Sequences: 23463169
Number of extensions: 91826315
Number of successful extensions: 235866
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1734
Number of HSP's successfully gapped in prelim test: 3316
Number of HSP's that attempted gapping in prelim test: 218856
Number of HSP's gapped (non-prelim): 12705
length of query: 155
length of database: 8,064,228,071
effective HSP length: 117
effective length of query: 38
effective length of database: 9,614,004,594
effective search space: 365332174572
effective search space used: 365332174572
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 71 (32.0 bits)