Query psy12215
Match_columns 155
No_of_seqs 174 out of 1418
Neff 9.0
Searched_HMMs 29240
Date Fri Aug 16 21:46:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12215.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12215hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xjy_A Rhombotin-2; oncoprotei 100.0 6.9E-30 2.4E-34 173.8 7.8 108 1-108 20-127 (131)
2 2xqn_T Testin, TESS; metal-bin 100.0 9.4E-29 3.2E-33 167.1 7.7 103 1-108 21-125 (126)
3 1rut_X Flinc4, fusion protein 99.9 8.6E-29 2.9E-33 178.0 5.9 117 1-121 23-139 (188)
4 1b8t_A Protein (CRP1); LIM dom 99.9 2.1E-28 7.2E-33 176.5 7.3 115 1-123 25-185 (192)
5 2rgt_A Fusion of LIM/homeobox 99.9 8.6E-27 2.9E-31 164.9 7.7 103 1-108 24-127 (169)
6 2jtn_A LIM domain-binding prot 99.9 1.3E-26 4.3E-31 165.9 7.0 103 1-108 78-181 (182)
7 2cup_A Skeletal muscle LIM-pro 99.9 6.2E-24 2.1E-28 138.2 4.9 78 1-82 24-101 (101)
8 2ehe_A Four and A half LIM dom 99.8 6.7E-22 2.3E-26 123.9 2.9 80 31-117 1-80 (82)
9 1x63_A Skeletal muscle LIM-pro 99.8 1.3E-20 4.5E-25 117.9 6.3 79 31-116 1-79 (82)
10 2cuq_A Four and A half LIM dom 99.8 1E-20 3.4E-25 117.9 4.6 78 31-117 1-78 (80)
11 1x3h_A Leupaxin; paxillin fami 99.8 1.1E-20 3.9E-25 117.7 4.5 78 31-117 1-78 (80)
12 2egq_A FHL1 protein; LIM domai 99.8 4.3E-20 1.5E-24 114.2 4.6 73 31-106 1-76 (77)
13 2dlo_A Thyroid receptor-intera 99.8 4.1E-20 1.4E-24 115.4 4.4 77 31-117 2-79 (81)
14 1m3v_A FLIN4, fusion of the LI 99.8 4.7E-21 1.6E-25 128.7 -0.1 92 1-108 23-114 (122)
15 1x6a_A LIMK-2, LIM domain kina 99.8 1.8E-19 6E-24 112.5 4.3 73 32-108 2-75 (81)
16 2cup_A Skeletal muscle LIM-pro 99.8 8.1E-20 2.8E-24 118.6 0.8 88 49-144 7-94 (101)
17 2xqn_T Testin, TESS; metal-bin 99.7 7.2E-19 2.4E-23 118.4 1.5 87 49-144 5-93 (126)
18 1j2o_A FLIN2, fusion of rhombo 99.7 1.3E-18 4.4E-23 115.4 0.2 86 1-108 21-106 (114)
19 1v6g_A Actin binding LIM prote 99.7 2E-17 6.9E-22 103.1 4.9 73 32-108 2-74 (81)
20 2xjy_A Rhombotin-2; oncoprotei 99.7 6.8E-18 2.3E-22 114.3 1.4 88 49-144 4-94 (131)
21 1x4k_A Skeletal muscle LIM-pro 99.7 8.8E-17 3E-21 97.9 5.6 68 43-117 3-70 (72)
22 1x68_A FHL5 protein; four-and- 99.7 3.3E-17 1.1E-21 100.9 3.6 71 43-120 3-75 (76)
23 1wyh_A SLIM 2, skeletal muscle 99.7 1.2E-16 4.2E-21 97.3 5.9 68 43-117 3-70 (72)
24 2jtn_A LIM domain-binding prot 99.6 3.4E-17 1.1E-21 116.8 2.6 102 31-144 43-147 (182)
25 1rut_X Flinc4, fusion protein 99.6 4.2E-17 1.4E-21 116.9 1.4 88 49-144 7-97 (188)
26 1iml_A CRIP, cysteine rich int 99.6 2.4E-16 8.3E-21 97.0 4.6 70 49-124 2-72 (76)
27 1g47_A Pinch protein; LIM doma 99.6 2.4E-16 8.1E-21 97.2 4.3 64 49-117 13-76 (77)
28 1x4l_A Skeletal muscle LIM-pro 99.6 5.3E-16 1.8E-20 94.5 4.5 59 49-108 7-67 (72)
29 1m3v_A FLIN4, fusion of the LI 99.6 2E-16 6.9E-21 105.9 2.7 71 49-124 7-80 (122)
30 2dar_A PDZ and LIM domain prot 99.6 9E-16 3.1E-20 97.4 5.3 74 35-117 15-88 (90)
31 1nyp_A Pinch protein; LIM doma 99.6 9.7E-16 3.3E-20 91.7 5.2 61 43-108 3-63 (66)
32 2cur_A Skeletal muscle LIM-pro 99.6 6.7E-16 2.3E-20 93.2 4.4 62 49-117 7-68 (69)
33 1a7i_A QCRP2 (LIM1); LIM domai 99.6 5.9E-16 2E-20 96.4 4.0 67 49-121 9-75 (81)
34 3f6q_B LIM and senescent cell 99.6 1E-15 3.6E-20 92.9 5.0 64 42-108 8-71 (72)
35 2d8z_A Four and A half LIM dom 99.6 8.2E-16 2.8E-20 93.1 4.5 65 44-117 4-68 (70)
36 2l3k_A Rhombotin-2, linker, LI 99.6 3.5E-16 1.2E-20 104.9 3.0 81 40-124 1-81 (123)
37 1x61_A Thyroid receptor intera 99.6 1.8E-15 6.3E-20 92.0 5.0 59 49-108 7-65 (72)
38 2cu8_A Cysteine-rich protein 2 99.6 1.7E-15 5.8E-20 93.2 4.4 67 43-117 7-74 (76)
39 2rgt_A Fusion of LIM/homeobox 99.6 2.4E-16 8.2E-21 111.2 0.2 86 49-144 8-93 (169)
40 1wig_A KIAA1808 protein; LIM d 99.6 3.2E-15 1.1E-19 91.3 4.3 62 43-108 3-64 (73)
41 1b8t_A Protein (CRP1); LIM dom 99.5 7.4E-16 2.5E-20 110.7 1.2 59 48-108 8-66 (192)
42 2iyb_E Testin, TESS, TES; LIM 99.5 5.6E-15 1.9E-19 88.2 4.6 58 49-107 4-64 (65)
43 2dj7_A Actin-binding LIM prote 99.5 4.7E-15 1.6E-19 92.1 3.9 62 49-117 17-78 (80)
44 2d8x_A Protein pinch; LIM doma 99.5 1.5E-14 5.2E-19 87.4 5.2 57 49-108 7-63 (70)
45 1x64_A Alpha-actinin-2 associa 99.5 1.6E-14 5.5E-19 91.4 5.0 62 49-117 27-88 (89)
46 1iml_A CRIP, cysteine rich int 99.5 7.5E-15 2.6E-19 90.2 3.0 54 1-58 18-72 (76)
47 1j2o_A FLIN2, fusion of rhombo 99.5 1.3E-14 4.4E-19 96.0 4.3 67 49-120 5-72 (114)
48 2d8y_A Eplin protein; LIM doma 99.5 1.2E-14 4.2E-19 92.3 3.7 66 49-120 17-82 (91)
49 1x62_A C-terminal LIM domain p 99.5 7.9E-15 2.7E-19 90.8 2.4 61 49-116 17-77 (79)
50 1x68_A FHL5 protein; four-and- 99.5 1.7E-14 5.8E-19 88.7 3.1 50 1-54 26-75 (76)
51 2cor_A Pinch protein; LIM doma 99.5 4E-14 1.4E-18 87.7 4.8 56 49-108 17-72 (79)
52 1a7i_A QCRP2 (LIM1); LIM domai 99.5 1.5E-14 5E-19 90.0 1.8 53 1-57 25-77 (81)
53 2l4z_A DNA endonuclease RBBP8, 99.4 5.3E-14 1.8E-18 94.2 4.0 59 49-108 63-122 (123)
54 1wyh_A SLIM 2, skeletal muscle 99.4 6.2E-14 2.1E-18 85.1 3.4 48 1-52 24-71 (72)
55 2d8z_A Four and A half LIM dom 99.4 4.1E-14 1.4E-18 85.5 2.4 48 1-52 22-69 (70)
56 2cur_A Skeletal muscle LIM-pro 99.4 4.6E-14 1.6E-18 85.1 2.1 48 1-52 22-69 (69)
57 1x4k_A Skeletal muscle LIM-pro 99.4 7E-14 2.4E-18 84.9 2.4 48 1-52 24-71 (72)
58 2ehe_A Four and A half LIM dom 99.4 1.8E-13 6E-18 85.2 4.3 48 1-52 34-81 (82)
59 1nyp_A Pinch protein; LIM doma 99.4 1.1E-13 3.8E-18 82.6 3.1 44 1-46 22-65 (66)
60 2dj7_A Actin-binding LIM prote 99.4 8E-14 2.7E-18 86.5 2.5 47 1-52 33-79 (80)
61 1x4l_A Skeletal muscle LIM-pro 99.4 1.2E-13 4.2E-18 83.8 2.8 44 1-46 26-69 (72)
62 2dar_A PDZ and LIM domain prot 99.4 8.1E-14 2.8E-18 88.3 2.0 48 1-52 42-89 (90)
63 2cu8_A Cysteine-rich protein 2 99.4 1.3E-13 4.6E-18 84.6 2.4 48 1-52 27-75 (76)
64 2co8_A NEDD9 interacting prote 99.4 1E-13 3.6E-18 86.4 1.8 58 49-108 17-76 (82)
65 1g47_A Pinch protein; LIM doma 99.4 1E-13 3.4E-18 85.3 1.4 47 1-51 30-76 (77)
66 2cuq_A Four and A half LIM dom 99.4 2.8E-13 9.5E-18 83.9 2.9 48 1-52 32-79 (80)
67 1x64_A Alpha-actinin-2 associa 99.3 3.9E-13 1.3E-17 85.0 3.0 47 1-51 42-88 (89)
68 1x3h_A Leupaxin; paxillin fami 99.3 2.2E-13 7.5E-18 84.3 1.8 48 1-52 32-79 (80)
69 2dlo_A Thyroid receptor-intera 99.3 2.9E-13 9.8E-18 84.1 1.7 48 1-52 32-80 (81)
70 1x61_A Thyroid receptor intera 99.3 5.2E-13 1.8E-17 81.0 2.7 48 1-53 24-71 (72)
71 1x63_A Skeletal muscle LIM-pro 99.3 7.6E-13 2.6E-17 82.3 3.3 47 1-51 34-80 (82)
72 2d8x_A Protein pinch; LIM doma 99.3 5.2E-13 1.8E-17 80.6 2.3 44 1-46 22-65 (70)
73 2cor_A Pinch protein; LIM doma 99.3 1.2E-12 4E-17 81.0 3.7 43 1-46 32-74 (79)
74 1x62_A C-terminal LIM domain p 99.3 2.6E-13 9E-18 83.9 0.5 44 1-46 32-75 (79)
75 1wig_A KIAA1808 protein; LIM d 99.3 2.1E-12 7.1E-17 78.7 3.4 45 1-46 22-66 (73)
76 2d8y_A Eplin protein; LIM doma 99.3 6.9E-13 2.4E-17 84.2 1.2 47 1-51 33-79 (91)
77 2l3k_A Rhombotin-2, linker, LI 99.2 5.1E-12 1.7E-16 84.5 4.3 56 1-59 27-82 (123)
78 2l4z_A DNA endonuclease RBBP8, 99.2 9.6E-13 3.3E-17 88.1 0.6 45 1-45 79-123 (123)
79 3f6q_B LIM and senescent cell 99.2 2E-12 6.7E-17 78.2 1.3 43 1-45 30-72 (72)
80 1x6a_A LIMK-2, LIM domain kina 99.2 5.3E-12 1.8E-16 78.2 2.8 48 1-51 32-80 (81)
81 2co8_A NEDD9 interacting prote 99.2 5E-12 1.7E-16 78.7 2.3 44 1-46 33-78 (82)
82 2iyb_E Testin, TESS, TES; LIM 99.2 1E-11 3.4E-16 73.9 2.2 41 1-43 21-64 (65)
83 2egq_A FHL1 protein; LIM domai 99.1 7.6E-12 2.6E-16 76.8 1.4 40 1-42 37-76 (77)
84 1v6g_A Actin binding LIM prote 98.9 7.8E-10 2.7E-14 68.3 2.7 45 1-46 32-76 (81)
85 1zfo_A LAsp-1; LIM domain, zin 97.9 4.2E-06 1.5E-10 41.9 1.4 27 49-76 5-31 (31)
86 4ap4_A E3 ubiquitin ligase RNF 94.1 0.048 1.6E-06 35.5 3.6 110 9-124 6-124 (133)
87 1t1h_A Gspef-atpub14, armadill 86.1 0.84 2.9E-05 26.6 3.5 49 8-59 6-55 (78)
88 2ect_A Ring finger protein 126 84.1 0.83 2.8E-05 26.6 2.8 50 10-59 15-64 (78)
89 1iym_A EL5; ring-H2 finger, ub 82.4 1.1 3.7E-05 24.1 2.7 47 11-57 6-53 (55)
90 2ecm_A Ring finger and CHY zin 79.3 1.1 3.9E-05 24.0 2.0 48 11-58 6-54 (55)
91 2kre_A Ubiquitin conjugation f 79.0 2.5 8.5E-05 26.3 3.8 49 8-59 27-75 (100)
92 2djb_A Polycomb group ring fin 78.7 0.78 2.7E-05 26.4 1.2 48 9-59 14-62 (72)
93 2ep4_A Ring finger protein 24; 77.7 1.8 6.3E-05 24.8 2.7 49 11-59 16-64 (74)
94 2jrp_A Putative cytoplasmic pr 77.7 5.4 0.00018 24.0 4.7 60 11-86 3-62 (81)
95 2jne_A Hypothetical protein YF 77.4 5.1 0.00018 24.9 4.7 59 11-85 33-91 (101)
96 2kiz_A E3 ubiquitin-protein li 76.0 1.6 5.5E-05 24.7 2.1 48 11-58 15-62 (69)
97 2kr4_A Ubiquitin conjugation f 75.7 1.6 5.6E-05 26.1 2.2 49 8-59 12-60 (85)
98 2ecn_A Ring finger protein 141 75.2 1.6 5.6E-05 24.7 2.0 46 10-59 15-60 (70)
99 2xeu_A Ring finger protein 4; 75.0 1.8 6.2E-05 23.8 2.1 49 11-59 4-56 (64)
100 4ayc_A E3 ubiquitin-protein li 74.1 2.1 7.3E-05 28.0 2.6 45 11-58 54-98 (138)
101 2csy_A Zinc finger protein 183 72.5 1.8 6.1E-05 25.4 1.7 46 10-58 15-60 (81)
102 1jjd_A Metallothionein, SMTA; 72.2 1.5 5.1E-05 24.4 1.2 30 12-43 9-39 (55)
103 2d8t_A Dactylidin, ring finger 72.2 7.5 0.00026 21.9 4.4 45 76-124 16-60 (71)
104 1t1h_A Gspef-atpub14, armadill 72.1 5.5 0.00019 22.9 3.9 48 74-124 7-54 (78)
105 1x4j_A Ring finger protein 38; 71.0 2.4 8.4E-05 24.4 2.1 8 78-85 63-70 (75)
106 1wgm_A Ubiquitin conjugation f 70.5 4.1 0.00014 25.1 3.2 49 8-59 20-69 (98)
107 3vk6_A E3 ubiquitin-protein li 69.9 2.8 9.7E-05 26.3 2.2 48 13-62 4-52 (101)
108 2l0b_A E3 ubiquitin-protein li 69.8 3.2 0.00011 25.0 2.5 8 78-85 80-87 (91)
109 2y43_A E3 ubiquitin-protein li 69.8 1.6 5.3E-05 26.8 1.1 45 11-58 23-68 (99)
110 2ecy_A TNF receptor-associated 69.5 1.4 4.9E-05 24.7 0.8 48 9-59 14-62 (66)
111 2ct2_A Tripartite motif protei 68.0 3 0.0001 24.6 2.1 51 9-59 14-68 (88)
112 1chc_A Equine herpes virus-1 r 68.0 2.8 9.5E-05 23.5 1.8 46 11-58 6-51 (68)
113 3ng2_A RNF4, snurf, ring finge 68.0 1.8 6.1E-05 24.5 1.0 50 10-59 10-63 (71)
114 2eqg_A Tumor necrosis factor, 67.9 1.7 6E-05 22.8 0.8 18 91-108 22-39 (49)
115 2gvi_A Conserved hypothetical 67.8 2.3 7.9E-05 30.1 1.7 30 76-106 173-202 (204)
116 2ckl_A Polycomb group ring fin 67.4 2.5 8.5E-05 26.3 1.7 46 10-58 15-61 (108)
117 4ayc_A E3 ubiquitin-protein li 66.8 5.7 0.00019 25.9 3.4 46 76-125 54-99 (138)
118 2bay_A PRE-mRNA splicing facto 65.5 5.3 0.00018 22.3 2.7 48 10-60 3-51 (61)
119 3hct_A TNF receptor-associated 65.4 3.4 0.00012 26.2 2.0 47 10-59 18-65 (118)
120 3hcs_A TNF receptor-associated 64.9 3.3 0.00011 28.0 2.0 49 9-60 17-66 (170)
121 2ysl_A Tripartite motif-contai 63.6 8.3 0.00029 21.7 3.4 48 75-124 20-68 (73)
122 2c2l_A CHIP, carboxy terminus 63.0 4.6 0.00016 29.2 2.6 49 8-59 206-255 (281)
123 2ecw_A Tripartite motif-contai 61.1 4.7 0.00016 23.4 2.0 47 76-124 20-70 (85)
124 2e5r_A Dystrobrevin alpha; ZZ 60.8 15 0.0005 20.7 4.0 37 68-107 6-45 (63)
125 1jm7_B BARD1, BRCA1-associated 60.6 4.6 0.00016 25.5 2.0 45 10-59 22-67 (117)
126 3ztg_A E3 ubiquitin-protein li 59.2 5.5 0.00019 23.7 2.1 47 75-123 13-60 (92)
127 2yur_A Retinoblastoma-binding 59.0 6.4 0.00022 22.5 2.3 46 76-123 16-62 (74)
128 2ckl_A Polycomb group ring fin 58.5 10 0.00036 23.3 3.4 46 75-124 15-61 (108)
129 2ea6_A Ring finger protein 4; 57.6 2.3 7.8E-05 23.8 0.1 48 10-57 15-66 (69)
130 2ckl_B Ubiquitin ligase protei 57.4 3.8 0.00013 27.5 1.2 45 11-58 55-101 (165)
131 2ecv_A Tripartite motif-contai 56.7 3.7 0.00013 23.8 1.0 47 10-59 19-71 (85)
132 1rmd_A RAG1; V(D)J recombinati 56.2 5.3 0.00018 25.0 1.7 46 11-59 24-70 (116)
133 2egp_A Tripartite motif-contai 56.0 4.3 0.00015 23.3 1.2 46 10-58 12-64 (79)
134 3lrq_A E3 ubiquitin-protein li 54.4 4 0.00014 25.0 0.9 46 11-59 23-70 (100)
135 1g25_A CDK-activating kinase a 53.2 9.1 0.00031 21.1 2.2 49 11-59 4-55 (65)
136 3l11_A E3 ubiquitin-protein li 52.0 8 0.00027 24.1 2.1 46 10-58 15-61 (115)
137 3fl2_A E3 ubiquitin-protein li 51.8 12 0.00042 23.6 3.0 47 75-124 52-98 (124)
138 2f42_A STIP1 homology and U-bo 51.6 8.3 0.00028 26.7 2.2 49 8-59 104-153 (179)
139 3knv_A TNF receptor-associated 49.0 6.6 0.00023 25.9 1.3 47 9-58 30-77 (141)
140 2ko5_A Ring finger protein Z; 48.8 17 0.00059 22.4 3.0 33 93-127 43-75 (99)
141 1z6u_A NP95-like ring finger p 47.4 9.5 0.00032 25.3 1.9 46 11-59 79-125 (150)
142 2das_A Zinc finger MYM-type pr 46.7 12 0.00042 21.0 2.0 26 11-37 21-48 (62)
143 1jm7_A BRCA1, breast cancer ty 45.4 6.6 0.00023 24.2 0.9 46 11-59 22-70 (112)
144 2vpb_A Hpygo1, pygopus homolog 42.8 9.3 0.00032 21.7 1.1 27 49-75 10-39 (65)
145 1bor_A Transcription factor PM 42.5 7.6 0.00026 20.9 0.7 42 11-58 7-48 (56)
146 2ysj_A Tripartite motif-contai 41.5 25 0.00086 19.0 2.9 32 75-108 20-51 (63)
147 1pft_A TFIIB, PFTFIIBN; N-term 39.3 13 0.00044 19.6 1.3 10 11-20 6-16 (50)
148 3oue_A Cytochrome C family pro 36.7 3.1 0.00011 28.2 -1.9 109 11-119 28-155 (158)
149 1e4u_A Transcriptional repress 35.4 13 0.00045 21.7 1.0 50 10-59 11-62 (78)
150 2ecj_A Tripartite motif-contai 35.2 23 0.0008 18.6 2.0 31 76-108 16-46 (58)
151 2ctu_A Zinc finger protein 483 35.0 13 0.00044 20.2 0.9 11 11-21 19-29 (73)
152 2dmj_A Poly (ADP-ribose) polym 35.0 13 0.00044 23.3 1.0 13 49-61 27-39 (106)
153 1v9x_A Poly (ADP-ribose) polym 35.0 13 0.00044 23.7 1.0 13 49-61 22-34 (114)
154 3gj3_B Nuclear pore complex pr 34.8 14 0.00047 18.1 0.8 25 32-56 6-30 (33)
155 2c2l_A CHIP, carboxy terminus 33.8 23 0.0008 25.3 2.4 50 72-124 205-254 (281)
156 3gj5_B Nuclear pore complex pr 30.9 22 0.00075 17.5 1.2 26 31-56 5-30 (34)
157 2d8v_A Zinc finger FYVE domain 29.8 14 0.00048 21.2 0.4 29 78-108 11-39 (67)
158 4ic3_A E3 ubiquitin-protein li 29.6 44 0.0015 18.9 2.7 41 76-124 25-66 (74)
159 2vje_B MDM4 protein; proto-onc 29.6 41 0.0014 18.4 2.4 27 96-124 28-55 (63)
160 1znf_A 31ST zinc finger from X 29.5 19 0.00064 14.9 0.8 10 11-20 2-11 (27)
161 2lk0_A RNA-binding protein 5; 29.4 29 0.001 16.5 1.5 26 32-57 4-29 (32)
162 3j20_Y 30S ribosomal protein S 29.4 41 0.0014 17.9 2.3 8 32-39 36-43 (50)
163 2hf1_A Tetraacyldisaccharide-1 29.3 27 0.00091 20.0 1.6 25 11-40 9-33 (68)
164 3odc_A Poly [ADP-ribose] polym 29.2 15 0.0005 23.3 0.5 13 49-61 21-33 (111)
165 3od8_A Poly [ADP-ribose] polym 29.2 14 0.00047 23.7 0.4 13 49-61 40-52 (116)
166 2jny_A Uncharacterized BCR; st 28.6 28 0.00095 19.9 1.6 26 10-40 10-35 (67)
167 2jr6_A UPF0434 protein NMA0874 28.6 28 0.00097 19.9 1.6 25 11-40 9-33 (68)
168 2js4_A UPF0434 protein BB2007; 28.3 27 0.00092 20.1 1.5 25 11-40 9-33 (70)
169 2e6s_A E3 ubiquitin-protein li 28.0 48 0.0017 19.3 2.6 45 32-77 9-57 (77)
170 3py7_A Maltose-binding peripla 27.9 38 0.0013 26.8 2.8 91 11-104 401-514 (523)
171 1ard_A Yeast transcription fac 27.4 21 0.00071 14.9 0.8 10 11-20 3-12 (29)
172 2kvh_A Zinc finger and BTB dom 27.3 17 0.00059 15.2 0.4 10 11-20 4-13 (27)
173 2xb1_A Pygopus homolog 2, B-ce 26.8 37 0.0013 21.0 2.1 27 49-75 5-34 (105)
174 1uw0_A DNA ligase III; DNA rep 26.7 19 0.00064 23.0 0.7 13 49-61 17-29 (117)
175 1vq8_U 50S ribosomal protein L 26.7 35 0.0012 19.5 1.8 24 12-35 5-29 (66)
176 3j21_V 50S ribosomal protein L 26.5 38 0.0013 19.3 1.9 24 12-35 6-30 (66)
177 2ds5_A CLPX, ATP-dependent CLP 26.0 80 0.0027 16.9 3.1 31 76-106 12-42 (51)
178 2ayj_A 50S ribosomal protein L 25.7 25 0.00086 19.4 1.0 23 32-54 18-40 (56)
179 2yu4_A E3 SUMO-protein ligase 25.6 70 0.0024 19.0 3.2 32 75-108 7-39 (94)
180 2k1p_A Zinc finger RAN-binding 25.3 26 0.00089 16.9 0.9 25 32-56 5-29 (33)
181 1ovx_A ATP-dependent CLP prote 24.6 77 0.0026 18.1 2.9 32 76-107 19-50 (67)
182 2ebr_A Nuclear pore complex pr 24.3 19 0.00065 19.1 0.3 33 27-59 5-37 (47)
183 2lbz_A Thuricin17, thurincin H 24.3 30 0.001 16.0 0.9 12 9-20 6-17 (31)
184 1paa_A Yeast transcription fac 24.2 26 0.00088 14.8 0.8 10 11-20 3-12 (30)
185 2lvu_A Zinc finger and BTB dom 29.8 16 0.00056 15.0 0.0 10 11-20 3-12 (26)
186 3d00_A Tungsten formylmethanof 23.9 20 0.00069 25.0 0.4 25 76-107 164-188 (191)
187 2ct0_A Non-SMC element 1 homol 23.1 22 0.00076 20.7 0.5 11 49-59 17-27 (74)
188 2m0f_A Zinc finger and BTB dom 23.1 22 0.00076 14.8 0.4 10 11-20 3-12 (29)
189 2pk7_A Uncharacterized protein 22.9 29 0.00099 19.9 0.9 25 11-40 9-33 (69)
190 2kvf_A Zinc finger and BTB dom 22.8 23 0.00079 14.8 0.4 10 11-20 4-13 (28)
191 3htk_C E3 SUMO-protein ligase 22.8 86 0.003 23.1 3.7 48 75-124 181-231 (267)
192 2dip_A Zinc finger SWIM domain 22.6 96 0.0033 19.0 3.4 36 70-107 27-65 (98)
193 1klr_A Zinc finger Y-chromosom 22.5 28 0.00095 14.5 0.7 10 11-20 3-12 (30)
194 2m0e_A Zinc finger and BTB dom 22.4 28 0.00094 14.4 0.7 10 11-20 3-12 (29)
195 3nw0_A Non-structural maintena 22.1 28 0.00097 25.0 1.0 27 49-76 182-208 (238)
196 1rik_A E6APC1 peptide; E6-bind 21.4 26 0.00089 14.6 0.4 10 11-20 3-12 (29)
197 2kvg_A Zinc finger and BTB dom 21.4 23 0.00078 14.8 0.2 10 11-20 4-13 (27)
198 1fyb_A Na-propi, proteinase in 20.8 1.7E+02 0.0057 18.4 5.1 83 13-104 4-87 (111)
199 2lvr_A Zinc finger and BTB dom 26.2 21 0.00071 15.1 0.0 11 11-21 4-14 (30)
200 1wim_A KIAA0161 protein; ring 20.7 82 0.0028 18.5 2.8 47 76-122 6-61 (94)
201 2k0a_A PRE-mRNA-splicing facto 20.6 42 0.0014 21.0 1.3 58 34-105 23-80 (109)
202 2ebq_A Nuclear pore complex pr 20.6 43 0.0015 17.7 1.2 30 30-59 8-37 (47)
203 2ecl_A Ring-box protein 2; RNF 20.1 1.2E+02 0.0042 17.2 3.4 19 67-85 48-74 (81)
No 1
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.96 E-value=6.9e-30 Score=173.79 Aligned_cols=108 Identities=58% Similarity=1.222 Sum_probs=99.2
Q ss_pred CCCccccccCcccccCCcccccCCCeEEEeCCeeecccchhccccccccccccccccccCceEEeccCcccccccccccc
Q psy12215 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQ 80 (155)
Q Consensus 1 A~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~c~~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~ 80 (155)
|+|+.||++||+|+.|+++|++.+..|+.++|++||++||.+++++.++|..|+++|.+.+.++.+.++.||++||+|..
T Consensus 20 a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~ 99 (131)
T 2xjy_A 20 AIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAA 99 (131)
T ss_dssp ETTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECTTSEEEEETTEEEEGGGCBCTT
T ss_pred ECCCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCccceeEeeCCceECccCcccCC
Confidence 68999999999999999999754568999999999999999999875579999999998778899999999999999999
Q ss_pred CCcccccCCeEEeeCCeeecHHhHHhhh
Q psy12215 81 CNHRFCVGDRFYLCDNKILCEYDYEERQ 108 (155)
Q Consensus 81 C~~~l~~~~~~~~~~~~~~C~~c~~~~~ 108 (155)
|+++|..+..|+..++++||..||.+++
T Consensus 100 C~~~L~~g~~f~~~~~~~~C~~c~~~~~ 127 (131)
T 2xjy_A 100 CQKHFCVGDRYLLINSDIVCEQDIYEWT 127 (131)
T ss_dssp TCCBCCTTCEEEEETTEEEEGGGHHHHH
T ss_pred CCCCCCCCCEEEEECCEEEcHHHHHHHh
Confidence 9999966788999999999999999876
No 2
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.95 E-value=9.4e-29 Score=167.15 Aligned_cols=103 Identities=24% Similarity=0.547 Sum_probs=95.7
Q ss_pred CCCccccccCcccccCCcccccCCCeEEEeCCeeecccchhccccccccccccccccccCceEEeccCcccc--cccccc
Q psy12215 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYH--LECFAC 78 (155)
Q Consensus 1 A~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~c~~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H--~~Cf~C 78 (155)
|+|+.||++||+|+.|+++|+ +..|+.++|++||+.||.+++++ +|.+|+++|.+++.++.+.++.|| ++||+|
T Consensus 21 a~~~~~H~~CF~C~~C~~~L~--~~~f~~~~g~~yC~~cy~~~~~~--~C~~C~~~I~~~~~~~~a~~~~~H~~~~CF~C 96 (126)
T 2xqn_T 21 AENQNWHLKHFCCFDCDSILA--GEIYVMVNDKPVCKPCYVKNHAV--VCQGCHNAIDPEVQRVTYNNFSWHASTECFLC 96 (126)
T ss_dssp ETTEEECGGGSBCTTTCCBCT--TSEEEEETTEEEEHHHHHHHSCC--BCTTTCSBCCTTSCEEEETTEEEESSTTTSBC
T ss_pred eCCCCccCCCCCcCCCCCCCC--cCEEEeECCEEechHHhCcCcCc--cCcccCCcCCcCceEEECCCCEeeCCCCCcCc
Confidence 679999999999999999994 56899999999999999999999 999999999976688899999999 999999
Q ss_pred ccCCcccccCCeEEeeCCeeecHHhHHhhh
Q psy12215 79 QQCNHRFCVGDRFYLCDNKILCEYDYEERQ 108 (155)
Q Consensus 79 ~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~ 108 (155)
..|+++| .+..|+..+|++||..+|.+++
T Consensus 97 ~~C~~~l-~~~~f~~~~~~~yC~~~~~~~f 125 (126)
T 2xqn_T 97 SCCSKCL-IGQKFMPVEGMVFCSVECKKRM 125 (126)
T ss_dssp TTTCCBC-TTSEEEEETTEEESSHHHHHSC
T ss_pred CCCCCcc-CCCeeEeECCEEcchHHhhhhc
Confidence 9999999 6888999999999998887764
No 3
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.95 E-value=8.6e-29 Score=178.01 Aligned_cols=117 Identities=44% Similarity=1.006 Sum_probs=99.3
Q ss_pred CCCccccccCcccccCCcccccCCCeEEEeCCeeecccchhccccccccccccccccccCceEEeccCcccccccccccc
Q psy12215 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQ 80 (155)
Q Consensus 1 A~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~c~~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~ 80 (155)
|+|+.||++||+|+.|+++|...+..|+.++|++||+.||.++++++++|..|+++|.+.+.++.+.++.||+.||+|..
T Consensus 23 a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~~e~~i~a~~~~~H~~CF~C~~ 102 (188)
T 1rut_X 23 AMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCST 102 (188)
T ss_dssp ETTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEECTTSEEEEETTEEECGGGCBCTT
T ss_pred ecCcEecccCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccccCcEEEEcCCCEEeCCCCeECC
Confidence 67899999999999999999642468999999999999999999874469999999998778889999999999999999
Q ss_pred CCcccccCCeEEeeCCeeecHHhHHhhhcccCCCeeeecCC
Q psy12215 81 CNHRFCVGDRFYLCDNKILCEYDYEERQVFCVGDRFYLCDN 121 (155)
Q Consensus 81 C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~~~~~c~~c~~ 121 (155)
|+++|..+..|+..++++||..||.+++ ++++.....
T Consensus 103 C~~~L~~g~~f~~~~g~~yC~~c~~~~~----~~~~~~~g~ 139 (188)
T 1rut_X 103 CRNRLVPGDRFHYINGSLFCEHDRPTAL----INGHLNSGG 139 (188)
T ss_dssp TCCBCCTTCEEEEETTEEEEGGGCCTTT----C--------
T ss_pred CCCCCCCCCeEEEECCeEECHHHHHHHh----cccccccCC
Confidence 9999955778999999999999999888 777765543
No 4
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.95 E-value=2.1e-28 Score=176.49 Aligned_cols=115 Identities=22% Similarity=0.468 Sum_probs=102.3
Q ss_pred CCCccccccCcccccCCcccccCCCeEEEeCCeeecccchhcccccc---------------------------------
Q psy12215 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTT--------------------------------- 47 (155)
Q Consensus 1 A~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~c~~~~~~~~--------------------------------- 47 (155)
|+|+.||++||+|+.|+++|.. ..|+.++|++||+.||.++|++.
T Consensus 25 a~g~~wH~~CF~C~~C~~~L~~--~~~~~~~g~~yC~~cy~~~f~~~c~~c~~~~g~~~~~~~~~~~~~~~~~~~~~p~~ 102 (192)
T 1b8t_A 25 CEGSSFHKSCFLCMVCKKNLDS--TTVAVHGDEIYCKSCYGKKYGPKGKGKGMGAGTLSTDKGESLGIKYEEGQSHRPTN 102 (192)
T ss_dssp ETTEEECTTTCBCTTTCCBCCS--SSEEEETTEEEEHHHHHHHHSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_pred eCCceecCCCCcCcccCCcCCC--CeeEecCCEeeChhhhHhhcCccccccccccccEecCCCcccccccccccccCCCC
Confidence 5799999999999999999954 46999999999999999998762
Q ss_pred -------------ccccccccccccCceEEeccCccccccccccccCCcccccCCeEEeeCCeeecHHhHHhhhcccCCC
Q psy12215 48 -------------GYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFCVGD 114 (155)
Q Consensus 48 -------------~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~~~~ 114 (155)
.+|.+|+++|.+.+ .+.+.++.||++||+|..|+++| .+..|+.+++++||+.||.+++ ++
T Consensus 103 ~~~~~~~~~~~~~~~C~~C~~~I~~~~-~v~a~~~~~H~~CF~C~~C~~~L-~~~~~~~~~g~~yC~~cy~~~f----~~ 176 (192)
T 1b8t_A 103 PNASRMAQKVGGSDGCPRCGQAVYAAE-KVIGAGKSWHKSCFRCAKCGKSL-ESTTLADKDGEIYCKGCYAKNF----GP 176 (192)
T ss_dssp CCCCCCCCCCCCCEECTTTSCEECSSS-CEEETTEEECTTTCBCTTTCCBC-CSSSEEEETTEEEEHHHHHHHT----CC
T ss_pred cCccccccccCCCCcCCCCCCEecCcE-EEecCCCccchhcCCccccCCCC-CCCcccccCCEEeCHHHHHHhc----CC
Confidence 13889999998754 45689999999999999999999 5667999999999999999999 99
Q ss_pred eeeecCCee
Q psy12215 115 RFYLCDNKI 123 (155)
Q Consensus 115 ~c~~c~~~i 123 (155)
+|..|++.+
T Consensus 177 kc~~C~~~~ 185 (192)
T 1b8t_A 177 KGFGFGQGA 185 (192)
T ss_dssp CCCCCCCCC
T ss_pred cCCCCCCcc
Confidence 999999865
No 5
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.93 E-value=8.6e-27 Score=164.94 Aligned_cols=103 Identities=45% Similarity=0.993 Sum_probs=93.1
Q ss_pred CCCccccccCcccccCCcccccCCCeEEEeCCeeecccchhccccccccccccccccccCceEEeccCcccccccccccc
Q psy12215 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQ 80 (155)
Q Consensus 1 A~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~c~~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~ 80 (155)
|+|+.||+.||+|+.|+++|.. .. +.++|++||+.||.++|++ +|.+|+++|.+.+.++.+.+..||+.||+|..
T Consensus 24 a~~~~wH~~CF~C~~C~~~L~~--~~-f~~~g~~yC~~~y~~~f~~--~C~~C~~~I~~~~~v~~a~~~~~H~~CF~C~~ 98 (169)
T 2rgt_A 24 ALDRHWHSKCLKCSDCHVPLAE--RC-FSRGESVYCKDDFFKRFGT--KCAACQLGIPPTQVVRRAQDFVYHLHCFACVV 98 (169)
T ss_dssp CSSCEECTTTSBCTTTCCBCCS--CC-EESSSCEECHHHHHHHHSC--BCTTTCCBCCTTSEEEEETTEEEEGGGCBCTT
T ss_pred ECCcEEccccCccCCCCCcCCC--CC-cccCCeeeecccccccccc--cccccccccCCCcEEEEcCCceEeeCCCcCCC
Confidence 6899999999999999999953 33 5899999999999999999 99999999998777888999999999999999
Q ss_pred CCcccccCCeEEe-eCCeeecHHhHHhhh
Q psy12215 81 CNHRFCVGDRFYL-CDNKILCEYDYEERQ 108 (155)
Q Consensus 81 C~~~l~~~~~~~~-~~~~~~C~~c~~~~~ 108 (155)
|+++|..+..|+. .+|++||..||.+++
T Consensus 99 C~~~L~~g~~f~~~~~g~~~C~~c~~~~~ 127 (169)
T 2rgt_A 99 CKRQLATGDEFYLMEDSRLVCKADYETAK 127 (169)
T ss_dssp TCCBCCTTCEEEECTTSCEEEHHHHHHHH
T ss_pred CCCCCCCCCceEEccCCeEECHHHHHHHh
Confidence 9999955777765 589999999999887
No 6
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.93 E-value=1.3e-26 Score=165.88 Aligned_cols=103 Identities=45% Similarity=0.993 Sum_probs=91.5
Q ss_pred CCCccccccCcccccCCcccccCCCeEEEeCCeeecccchhccccccccccccccccccCceEEeccCcccccccccccc
Q psy12215 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQ 80 (155)
Q Consensus 1 A~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~c~~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~ 80 (155)
|+|+.||+.||+|+.|+++|.. .. +.++|++||+.||.++|++ +|..|+++|.+.+.++.+.+..||+.||+|..
T Consensus 78 a~~~~wH~~CF~C~~C~~~L~~--~~-f~~~g~~yC~~~y~~~f~~--kC~~C~~~I~~~~~v~~a~~~~~H~~CF~C~~ 152 (182)
T 2jtn_A 78 ALDRHWHSKCLKCSDCHVPLAE--RC-FSRGESVYCKDDFFKRFGT--KCAACQLGIPPTQVVRRAQDFVYHLHCFACVV 152 (182)
T ss_dssp ETTEEECSSTTSCTTTCCCCSS--CC-EEETTEEECHHHHHHTTSC--CCTTTCCCCCSSCCCCEETTEECCTTTCCCTT
T ss_pred ecCCeEccccCccCCCCCccCC--Cc-eeECCEeeecCcccccccc--ccccCCCccCCCceEEecCCCCEEeCCCcCCC
Confidence 5799999999999999999953 34 5799999999999999999 99999999998666778999999999999999
Q ss_pred CCcccccCCeEEe-eCCeeecHHhHHhhh
Q psy12215 81 CNHRFCVGDRFYL-CDNKILCEYDYEERQ 108 (155)
Q Consensus 81 C~~~l~~~~~~~~-~~~~~~C~~c~~~~~ 108 (155)
|+++|..+..|+. .++++||..||.++.
T Consensus 153 C~~~L~~g~~f~~~~~g~~yC~~cy~~~~ 181 (182)
T 2jtn_A 153 CKRQLATGDEFYLMEDSRLVCKADYETAK 181 (182)
T ss_dssp TCCCCCTTCEEEECTTSCEECHHHHHHHT
T ss_pred CCCCCCCCCceEEccCCEEECHHHHHHhh
Confidence 9999955677764 579999999998753
No 7
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.89 E-value=6.2e-24 Score=138.16 Aligned_cols=78 Identities=31% Similarity=0.602 Sum_probs=72.4
Q ss_pred CCCccccccCcccccCCcccccCCCeEEEeCCeeecccchhccccccccccccccccccCceEEeccCcccccccccccc
Q psy12215 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQ 80 (155)
Q Consensus 1 A~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~c~~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~ 80 (155)
|+|+.||+.||+|+.|+++|. +..|+.++|++||+.||.+++++ +|.+|+++|.+++.++.+.++.||++||+|..
T Consensus 24 a~~~~~H~~CF~C~~C~~~L~--~~~~~~~~g~~yC~~cy~~~~~~--~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~ 99 (101)
T 2cup_A 24 YKNRFWHDTCFRCAKCLHPLA--NETFVAKDNKILCNKCTTREDSP--KCKGCFKAIVAGDQNVEYKGTVWHKDCFSGPS 99 (101)
T ss_dssp ETTEEEETTTCCCSSSCCCTT--SSCCEEETTEEECHHHHTTCCCC--BCSSSCCBCCSSSCEEESSSCEEETTTCCCTT
T ss_pred ECccChhhcCCcccccCCCCC--cCeeECcCCEEEChhHhhhhcCC--ccccCCCccccCCeEEEeCCcchHHhCCCCCC
Confidence 578999999999999999994 45799999999999999999999 99999999986667899999999999999999
Q ss_pred CC
Q psy12215 81 CN 82 (155)
Q Consensus 81 C~ 82 (155)
|+
T Consensus 100 C~ 101 (101)
T 2cup_A 100 SG 101 (101)
T ss_dssp CC
T ss_pred CC
Confidence 85
No 8
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=6.7e-22 Score=123.88 Aligned_cols=80 Identities=20% Similarity=0.367 Sum_probs=73.5
Q ss_pred CCeeecccchhccccccccccccccccccCceEEeccCccccccccccccCCcccccCCeEEeeCCeeecHHhHHhhhcc
Q psy12215 31 ANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVF 110 (155)
Q Consensus 31 ~~~~~C~~c~~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~ 110 (155)
+|++||++||.+++++ +|.+|+++|.+++.++.+.++.||++||+|..|+++| .+..|+..++++||..||.+++
T Consensus 1 ~g~~yC~~~y~~~~~~--~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L-~~~~f~~~~~~~~C~~c~~~~~-- 75 (82)
T 2ehe_A 1 GSSGSSGPCYDNTFAN--TCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSL-ADEPFTCQDSELLCNDCYCSAF-- 75 (82)
T ss_dssp CCCCCCCCCCCCCCSC--BCTTTCCBCCSSCCBCCCSSCCCBTTTSBCTTTCCBC-SSCCEEEETTEEEETTTSSCCG--
T ss_pred CCceechhHhCcccCC--cCccCCCccccCcEEEEeCCccccccCCeecCCCCcc-CCCccEeeCCEEECHHHHhhhc--
Confidence 5789999999999999 9999999999656788999999999999999999999 6778999999999999999988
Q ss_pred cCCCeee
Q psy12215 111 CVGDRFY 117 (155)
Q Consensus 111 ~~~~~c~ 117 (155)
+++|.
T Consensus 76 --~~~C~ 80 (82)
T 2ehe_A 76 --SSGPS 80 (82)
T ss_dssp --GGSSC
T ss_pred --CCCCC
Confidence 77664
No 9
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.82 E-value=1.3e-20 Score=117.92 Aligned_cols=79 Identities=20% Similarity=0.322 Sum_probs=72.0
Q ss_pred CCeeecccchhccccccccccccccccccCceEEeccCccccccccccccCCcccccCCeEEeeCCeeecHHhHHhhhcc
Q psy12215 31 ANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVF 110 (155)
Q Consensus 31 ~~~~~C~~c~~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~ 110 (155)
++.+||++||.+++++ +|.+|+++|.+.+.++.+.++.||++||+|..|+++| .+..|+.+++++||+.||.+++
T Consensus 1 ~~~~yC~~cy~~~~~~--~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L-~~~~~~~~~~~~yC~~cy~~~f-- 75 (82)
T 1x63_A 1 GSSGSSGKCTTREDSP--KCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVI-GTGSFFPKGEDFYCVTCHETKF-- 75 (82)
T ss_dssp CCSCCCCCCCSCCCSC--BCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCC-TTSCEEEETTEEEEHHHHHHHT--
T ss_pred CCCcCchhHHccccCC--cCccCCcccccCceEEEECccccccccCchhhCCCcc-CCCccEeeCCEEECHHHHHHHh--
Confidence 3679999999999998 9999999999767888999999999999999999999 5668999999999999999998
Q ss_pred cCCCee
Q psy12215 111 CVGDRF 116 (155)
Q Consensus 111 ~~~~~c 116 (155)
++++
T Consensus 76 --~~~~ 79 (82)
T 1x63_A 76 --ASGP 79 (82)
T ss_dssp --SCCC
T ss_pred --CCCC
Confidence 6654
No 10
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.81 E-value=1e-20 Score=117.92 Aligned_cols=78 Identities=21% Similarity=0.380 Sum_probs=71.4
Q ss_pred CCeeecccchhccccccccccccccccccCceEEeccCccccccccccccCCcccccCCeEEeeCCeeecHHhHHhhhcc
Q psy12215 31 ANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVF 110 (155)
Q Consensus 31 ~~~~~C~~c~~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~ 110 (155)
+|++||++||.+++++ +|.+|+++|.+ ..+.+.++.||++||+|..|+++| .+..|+..++++||+.||.+++
T Consensus 1 gg~~yC~~cy~~~~~~--~C~~C~~~I~~--~~v~a~~~~~H~~CF~C~~C~~~L-~~~~~~~~~~~~yC~~cy~~~f-- 73 (80)
T 2cuq_A 1 GSSGSSGPCYENKFAP--RCARCSKTLTQ--GGVTYRDQPWHRECLVCTGCQTPL-AGQQFTSRDEDPYCVACFGELF-- 73 (80)
T ss_dssp CCCCSCCCCCCCCSSC--CCTTTCCCCCS--CCEESSSSEECTTTCBCSSSCCBC-TTCCEEECSSSEEEHHHHHHHT--
T ss_pred CCcEEcHHHHccccCC--cCCCCCCEecC--cEEEECCchhhhhhCCcccCCCcC-CCCeeEeECCEEECHHHHHHHc--
Confidence 4789999999999998 99999999986 367899999999999999999999 6778999999999999999999
Q ss_pred cCCCeee
Q psy12215 111 CVGDRFY 117 (155)
Q Consensus 111 ~~~~~c~ 117 (155)
+++|.
T Consensus 74 --~~~c~ 78 (80)
T 2cuq_A 74 --ASGPS 78 (80)
T ss_dssp --TCSTT
T ss_pred --CCCCC
Confidence 77764
No 11
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.81 E-value=1.1e-20 Score=117.66 Aligned_cols=78 Identities=27% Similarity=0.634 Sum_probs=71.2
Q ss_pred CCeeecccchhccccccccccccccccccCceEEeccCccccccccccccCCcccccCCeEEeeCCeeecHHhHHhhhcc
Q psy12215 31 ANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVF 110 (155)
Q Consensus 31 ~~~~~C~~c~~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~ 110 (155)
+|++||++||.+++++ +|.+|+++|.+ ..+.+.++.||++||+|..|+++| .+..|+.+++++||+.||.+++
T Consensus 1 gg~~yC~~~y~~~~~~--~C~~C~~~I~~--~~v~a~~~~~H~~CF~C~~C~~~L-~~~~~~~~~~~~yC~~~y~~~f-- 73 (80)
T 1x3h_A 1 GSSGSSGKDFLAMFSP--KCGGCNRPVLE--NYLSAMDTVWHPECFVCGDCFTSF-STGSFFELDGRPFCELHYHHRR-- 73 (80)
T ss_dssp CCCCCCCCCCCCCCSC--BCTTTCCBCCS--SCEEETTEEECTTTCBCSSSCCBS-CSSCCEESSSCEECHHHHHHHH--
T ss_pred CCCccchhHHhhhcCC--ccccCCCeecc--eeEEECCCeEecCcCChhhCCCCC-CCCcEEeECCEEECHHHHHHHc--
Confidence 4789999999999998 99999999986 467899999999999999999999 5567999999999999999999
Q ss_pred cCCCeee
Q psy12215 111 CVGDRFY 117 (155)
Q Consensus 111 ~~~~~c~ 117 (155)
+++|.
T Consensus 74 --~~~C~ 78 (80)
T 1x3h_A 74 --GSGPS 78 (80)
T ss_dssp --SSSCC
T ss_pred --CCCCC
Confidence 88775
No 12
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=4.3e-20 Score=114.21 Aligned_cols=73 Identities=19% Similarity=0.429 Sum_probs=66.9
Q ss_pred CCeeecccchhcccccccccccccccccc---CceEEeccCccccccccccccCCcccccCCeEEeeCCeeecHHhHHh
Q psy12215 31 ANLILCKRDYLRLFGTTGYCAACTKVIPA---FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106 (155)
Q Consensus 31 ~~~~~C~~c~~~~~~~~~~C~~C~~~I~~---~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~ 106 (155)
++++||++||.+++++ +|++|+++|.+ .+.++.+.++.||++||+|..|+++| .+..|+..++++||+.||.+
T Consensus 1 g~~~yC~~cy~~~~~~--~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~L-~~~~f~~~~~~~yC~~cy~~ 76 (77)
T 2egq_A 1 GSSGSSGDCYKNFVAK--KCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNL-ANKRFVFHQEQVYCPDCAKK 76 (77)
T ss_dssp CCSSCCTTCCCSCCCC--CCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCBC-TTSCCCEETTEECCHHHHHH
T ss_pred CCCeEchhHhchhhCc--cCcccCCcccCCCCCceeEEECcceeCcccCEehhcCCCC-CCCccEeECCEEEChHHhcc
Confidence 3689999999999998 99999999996 45788999999999999999999999 67789999999999999975
No 13
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.79 E-value=4.1e-20 Score=115.44 Aligned_cols=77 Identities=23% Similarity=0.430 Sum_probs=69.1
Q ss_pred CCeeecccchhccccccccccccccccccCceEEeccCccccccccccccCCcccccCCeEEee-CCeeecHHhHHhhhc
Q psy12215 31 ANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYEERQV 109 (155)
Q Consensus 31 ~~~~~C~~c~~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~-~~~~~C~~c~~~~~~ 109 (155)
||++||++||. ++++ +|.+|+++|.+ .++.+.++.||++||+|..|+++| .+..|+.. ++++||..||.+++
T Consensus 2 ~g~~yC~~~y~-~~~~--~C~~C~~~I~~--~~~~a~~~~~H~~CF~C~~C~~~L-~~~~f~~~~~g~~yC~~cy~~~f- 74 (81)
T 2dlo_A 2 SSGSSGEGCYV-ATLE--KCATCSQPILD--RILRAMGKAYHPGCFTCVVCHRGL-DGIPFTVDATSQIHCIEDFHRKF- 74 (81)
T ss_dssp CCCCCCCCCCC-SSCC--BCTTTCCBCCS--CCEEETTEEECTTTCBCSSSCCBC-TTSCEECCTTCCCEEHHHHHHHT-
T ss_pred cCCEECHHHhh-cCCC--ccccCCCeecc--eeEEECCccccHHhcCcccCCCcc-CCCeeEECCCCEEECHHHHHHHh-
Confidence 68999999999 6777 99999999985 578999999999999999999999 57778776 68999999999999
Q ss_pred ccCCCeee
Q psy12215 110 FCVGDRFY 117 (155)
Q Consensus 110 ~~~~~~c~ 117 (155)
+++|.
T Consensus 75 ---~~~C~ 79 (81)
T 2dlo_A 75 ---ASGPS 79 (81)
T ss_dssp ---TSSSC
T ss_pred ---cCcCC
Confidence 88775
No 14
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.79 E-value=4.7e-21 Score=128.65 Aligned_cols=92 Identities=29% Similarity=0.695 Sum_probs=77.6
Q ss_pred CCCccccccCcccccCCcccccCCCeEEEeCCeeecccchhccccccccccccccccccCceEEeccCcccccccccccc
Q psy12215 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQ 80 (155)
Q Consensus 1 A~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~c~~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~ 80 (155)
|+++.||++||+|+.|+++|.+.+..|+.++|++||+.||.++|+++++|++|+++|.+ ..+.+.+.
T Consensus 23 a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~--~~~~~~g~----------- 89 (122)
T 1m3v_A 23 AMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSG--GDVMVVGE----------- 89 (122)
T ss_dssp ETTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCC--EESSSSSS-----------
T ss_pred ECCceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCc--hheEEcCC-----------
Confidence 57899999999999999999532457999999999999999999987789999999986 23344442
Q ss_pred CCcccccCCeEEeeCCeeecHHhHHhhh
Q psy12215 81 CNHRFCVGDRFYLCDNKILCEYDYEERQ 108 (155)
Q Consensus 81 C~~~l~~~~~~~~~~~~~~C~~c~~~~~ 108 (155)
..| .++.|+.+++++||..||.++.
T Consensus 90 --~~l-~g~~f~~~~~~~yC~~~~~~~~ 114 (122)
T 1m3v_A 90 --PTL-MGGEFGDEDERLITRLENTQFD 114 (122)
T ss_dssp --SSC-CSCTTCCTTCCCCEECTTTTTT
T ss_pred --cCC-CCCccEecCCEeEccCcchhch
Confidence 245 7889999999999999998775
No 15
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.77 E-value=1.8e-19 Score=112.51 Aligned_cols=73 Identities=27% Similarity=0.528 Sum_probs=66.5
Q ss_pred CeeecccchhccccccccccccccccccCceEEeccCccccccccccccCCcccccCCeEE-eeCCeeecHHhHHhhh
Q psy12215 32 NLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFY-LCDNKILCEYDYEERQ 108 (155)
Q Consensus 32 ~~~~C~~c~~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~-~~~~~~~C~~c~~~~~ 108 (155)
+.+||++||.+++++ +|.+|+++|.+ .++.+.++.||++||+|..|+++|..+..|. ..++++||..||.+++
T Consensus 2 ~~~yC~~~y~~~~~~--~C~~C~~~I~~--~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~ 75 (81)
T 1x6a_A 2 SSGSSGKDYWGKFGE--FCHGCSLLMTG--PFMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVV 75 (81)
T ss_dssp CCCCCCCCSSCCSSC--BCTTTCCBCCS--CCBCCTTCCBCTTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHH
T ss_pred CCccchhHHhhhcCC--cCccCCCCcCc--eEEEECCceeccccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHh
Confidence 579999999999999 99999999984 5788999999999999999999995567787 4889999999999988
No 16
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.75 E-value=8.1e-20 Score=118.55 Aligned_cols=88 Identities=25% Similarity=0.485 Sum_probs=77.3
Q ss_pred cccccccccccCceEEeccCccccccccccccCCcccccCCeEEeeCCeeecHHhHHhhhcccCCCeeeecCCeecchhh
Q psy12215 49 YCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFCVGDRFYLCDNKILCEYD 128 (155)
Q Consensus 49 ~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~~~~~c~~c~~~i~c~~~ 128 (155)
+|.+|+++|.+++.++.+.++.||++||+|..|+++| .+..|+.++|++||+.||.+++ +++|..|+++|...
T Consensus 7 ~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L-~~~~~~~~~g~~yC~~cy~~~~----~~~C~~C~~~I~~~-- 79 (101)
T 2cup_A 7 GCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPL-ANETFVAKDNKILCNKCTTRED----SPKCKGCFKAIVAG-- 79 (101)
T ss_dssp BCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCT-TSSCCEEETTEEECHHHHTTCC----CCBCSSSCCBCCSS--
T ss_pred cCcccCCcccCCceEEEECccChhhcCCcccccCCCC-CcCeeECcCCEEEChhHhhhhc----CCccccCCCccccC--
Confidence 8999999998645788999999999999999999999 6778999999999999999999 99999999999721
Q ss_pred HHHHHHHHhhcCCCCc
Q psy12215 129 YEERQVFANIAYNPSS 144 (155)
Q Consensus 129 ~~~~~~~~~~~~hp~~ 144 (155)
+..+.++|+.|||..
T Consensus 80 -~~~~~a~~~~~H~~C 94 (101)
T 2cup_A 80 -DQNVEYKGTVWHKDC 94 (101)
T ss_dssp -SCEEESSSCEEETTT
T ss_pred -CeEEEeCCcchHHhC
Confidence 234567888999974
No 17
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.72 E-value=7.2e-19 Score=118.44 Aligned_cols=87 Identities=24% Similarity=0.510 Sum_probs=76.6
Q ss_pred cccccccccccCceEEeccCccccccccccccCCcccccCCeEEeeCCeeecHHhHHhhhcccCCCeeeecCCeecchhh
Q psy12215 49 YCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFCVGDRFYLCDNKILCEYD 128 (155)
Q Consensus 49 ~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~~~~~c~~c~~~i~c~~~ 128 (155)
+|.+|+++|.+. .++.+.++.||++||+|..|+++| .+..|+.++|++||..||.+++ +++|..|+++|...
T Consensus 5 ~C~~C~~~I~~~-~~~~a~~~~~H~~CF~C~~C~~~L-~~~~f~~~~g~~yC~~cy~~~~----~~~C~~C~~~I~~~-- 76 (126)
T 2xqn_T 5 RCAGCDELIFSN-EYTQAENQNWHLKHFCCFDCDSIL-AGEIYVMVNDKPVCKPCYVKNH----AVVCQGCHNAIDPE-- 76 (126)
T ss_dssp BBTTTSSBCCSS-CEEEETTEEECGGGSBCTTTCCBC-TTSEEEEETTEEEEHHHHHHHS----CCBCTTTCSBCCTT--
T ss_pred CCccCCCEeCCc-eEEeeCCCCccCCCCCcCCCCCCC-CcCEEEeECCEEechHHhCcCc----CccCcccCCcCCcC--
Confidence 899999999863 477899999999999999999999 6778999999999999999999 99999999999821
Q ss_pred HHHHHHHHhhcCC--CCc
Q psy12215 129 YEERQVFANIAYN--PSS 144 (155)
Q Consensus 129 ~~~~~~~~~~~~h--p~~ 144 (155)
+..++++++.|| |..
T Consensus 77 -~~~~~a~~~~~H~~~~C 93 (126)
T 2xqn_T 77 -VQRVTYNNFSWHASTEC 93 (126)
T ss_dssp -SCEEEETTEEEESSTTT
T ss_pred -ceEEECCCCEeeCCCCC
Confidence 134667889999 863
No 18
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.70 E-value=1.3e-18 Score=115.37 Aligned_cols=86 Identities=40% Similarity=0.728 Sum_probs=70.5
Q ss_pred CCCccccccCcccccCCcccccCCCeEEEeCCeeecccchhccccccccccccccccccCceEEeccCcccccccccccc
Q psy12215 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQ 80 (155)
Q Consensus 1 A~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~c~~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~ 80 (155)
|+++.||+.||+|+.|+++|.+.+..|+.++|++||+.||.++|++ +|..|.. + .++.
T Consensus 21 a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~--~c~~c~~---~--~~~~--------------- 78 (114)
T 1j2o_A 21 AIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGS--GGHMGSG---G--DVMV--------------- 78 (114)
T ss_dssp CSSSEECTTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTS--CCSSCBS---C--SCCC---------------
T ss_pred ECchhHHHhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCc--ccCcCCC---C--ceeE---------------
Confidence 6899999999999999999964345799999999999999999999 8887762 1 2221
Q ss_pred CCcccccCCeEEeeCCeeecHHhHHhhh
Q psy12215 81 CNHRFCVGDRFYLCDNKILCEYDYEERQ 108 (155)
Q Consensus 81 C~~~l~~~~~~~~~~~~~~C~~c~~~~~ 108 (155)
|+..+..++.|+..++++||..|+.++.
T Consensus 79 ~~~~~~~g~~f~~~~~~~~C~~~~~~~~ 106 (114)
T 1j2o_A 79 VGEPTLMGGEFGDEDERLITRLENTQFD 106 (114)
T ss_dssp SSCSSTTSSBCCCSSSCCCEEEECTTCC
T ss_pred cCCccCCCCeeEEcCCEeecchhhhccc
Confidence 3455447889999999999999988765
No 19
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.69 E-value=2e-17 Score=103.10 Aligned_cols=73 Identities=30% Similarity=0.574 Sum_probs=63.2
Q ss_pred CeeecccchhccccccccccccccccccCceEEeccCccccccccccccCCcccccCCeEEeeCCeeecHHhHHhhh
Q psy12215 32 NLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQ 108 (155)
Q Consensus 32 ~~~~C~~c~~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~ 108 (155)
..+||++||.+++++ +|..|+++|.+ .++.+.++.||++||+|..|+++|..+..+...++.+||..||.+.+
T Consensus 2 ~~~yC~~dy~~~~~~--~C~~C~~~I~~--~~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~~~~C~~C~~~~~ 74 (81)
T 1v6g_A 2 SSGSSGLDYQRLYGT--RCFSCDQFIEG--EVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLPVS 74 (81)
T ss_dssp CCCCCCSCGGGSCCC--BCTTTCCBCCS--CCEEETTEEECTTTSSCSSSCCCCCSSSCEEEETTEEEEHHHHSCCS
T ss_pred CCCcchHHHHhHhCC--cCccccCEecc--ceEEECCceeCccCCccccCCCCCCCCCEEEeCCCCEEChhhhcccC
Confidence 468999999999999 99999999985 57889999999999999999999954555556666789999997765
No 20
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.67 E-value=6.8e-18 Score=114.30 Aligned_cols=88 Identities=25% Similarity=0.529 Sum_probs=75.1
Q ss_pred cccccccccccCceEEeccCccccccccccccCCccccc-CCeEEeeCCeeecHHhHHhhhcccCCC--eeeecCCeecc
Q psy12215 49 YCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCV-GDRFYLCDNKILCEYDYEERQVFCVGD--RFYLCDNKILC 125 (155)
Q Consensus 49 ~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~-~~~~~~~~~~~~C~~c~~~~~~~~~~~--~c~~c~~~i~c 125 (155)
+|.+|+++|.+ ..++.+.++.||++||+|..|+.+|.. +..|+.++|++||..||.+++ ++ +|..|.++|..
T Consensus 4 ~C~~C~~~I~~-~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~----~~~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 4 TCGGCQQNIGD-RYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLF----GQDGLCASCDKRIRA 78 (131)
T ss_dssp BBTTTCCBCCS-SEEEEETTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHH----CCCEECTTTCCEECT
T ss_pred cCcCCCCEeCC-cEEEEECCCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhC----CCccChhhcCCccCc
Confidence 79999999986 446789999999999999999999952 468999999999999999999 88 99999999972
Q ss_pred hhhHHHHHHHHhhcCCCCc
Q psy12215 126 EYDYEERQVFANIAYNPSS 144 (155)
Q Consensus 126 ~~~~~~~~~~~~~~~hp~~ 144 (155)
. +..+.+.++.|||..
T Consensus 79 ~---e~~~~a~~~~~H~~C 94 (131)
T 2xjy_A 79 Y---EMTMRVKDKVYHLEC 94 (131)
T ss_dssp T---SEEEEETTEEEEGGG
T ss_pred c---ceeEeeCCceECccC
Confidence 1 123456788999863
No 21
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.66 E-value=8.8e-17 Score=97.89 Aligned_cols=68 Identities=25% Similarity=0.431 Sum_probs=61.2
Q ss_pred cccccccccccccccccCceEEeccCccccccccccccCCcccccCCeEEeeCCeeecHHhHHhhhcccCCCeee
Q psy12215 43 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFCVGDRFY 117 (155)
Q Consensus 43 ~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~~~~~c~ 117 (155)
++++ +|..|+++|.+.+.++.+.++.||++||+|..|+++| .+..|+..++++||..||.+++ +++|.
T Consensus 3 ~~~~--~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L-~~~~~~~~~~~~yC~~cy~~~f----~~~C~ 70 (72)
T 1x4k_A 3 SGSS--GCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPI-GTKSFIPKDNQNFCVPCYEKQH----ASGPS 70 (72)
T ss_dssp SCCC--CBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCCC-CSSSEEEETTEEEEHHHHHHHT----SSCCC
T ss_pred ccCC--CCccCCCcccCCceEEEECcCeecccCCcccccCCcc-CCCccCccCCeEECHHHHhHHh----CCCCC
Confidence 4566 8999999999766788999999999999999999999 5668999999999999999999 88775
No 22
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.66 E-value=3.3e-17 Score=100.93 Aligned_cols=71 Identities=24% Similarity=0.427 Sum_probs=63.5
Q ss_pred ccccccccccccccccc--CceEEeccCccccccccccccCCcccccCCeEEeeCCeeecHHhHHhhhcccCCCeeeecC
Q psy12215 43 LFGTTGYCAACTKVIPA--FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFCVGDRFYLCD 120 (155)
Q Consensus 43 ~~~~~~~C~~C~~~I~~--~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~~~~~c~~c~ 120 (155)
++++ +|.+|+++|.+ .+.++.+.++.||++||+|..|+++| .+..|+..++++||..||.+++ +++|..++
T Consensus 3 ~~~~--~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L-~~~~f~~~~g~~yC~~cy~~~f----~~~C~~~s 75 (76)
T 1x68_A 3 SGSS--GCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSL-VGKGFLTQNKEIFCQKCGSGMD----TDISGPSS 75 (76)
T ss_dssp TCCC--CCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBC-SSSCEEEETTEEEETTTTCCCC----CCSSSSSC
T ss_pred ccCC--CCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcC-CCCceEeECCEEECHHHhhhhh----CCcCCCCC
Confidence 4666 89999999986 45788999999999999999999999 6788999999999999999999 88887664
No 23
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.66 E-value=1.2e-16 Score=97.27 Aligned_cols=68 Identities=18% Similarity=0.327 Sum_probs=60.9
Q ss_pred cccccccccccccccccCceEEeccCccccccccccccCCcccccCCeEEeeCCeeecHHhHHhhhcccCCCeee
Q psy12215 43 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFCVGDRFY 117 (155)
Q Consensus 43 ~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~~~~~c~ 117 (155)
++++ +|.+|+++|.+.+.++.+.++.||++||+|..|+++| .+..|+..++++||..||.+++ +++|.
T Consensus 3 ~~~~--~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L-~~~~~~~~~~~~yC~~cy~~~f----~~~C~ 70 (72)
T 1wyh_A 3 SGSS--GCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPL-GSRSFVPDKGAHYCVPCYENKF----ASGPS 70 (72)
T ss_dssp CCCC--BCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCBT-TTSCEEEETTEEEEHHHHHHHT----SCCCC
T ss_pred ccCC--CCccCCCccccCccEEEECccccCcccCeECCCCCcC-CCCccCCcCCeEECHHHHHHHc----cCcCC
Confidence 4555 8999999999756788999999999999999999999 6667999999999999999999 88775
No 24
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.65 E-value=3.4e-17 Score=116.84 Aligned_cols=102 Identities=17% Similarity=0.308 Sum_probs=81.7
Q ss_pred CCeeecccchh---ccccccccccccccccccCceEEeccCccccccccccccCCcccccCCeEEeeCCeeecHHhHHhh
Q psy12215 31 ANLILCKRDYL---RLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEER 107 (155)
Q Consensus 31 ~~~~~C~~c~~---~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~ 107 (155)
++..+|...+. ....+ +|.+|+++|.+ ..++.+.++.||+.||+|..|+++| .+..| .++|++||..||.++
T Consensus 43 ~~~~~~~~~~~~~~~~~~~--~C~~C~~~I~~-~~~~~a~~~~wH~~CF~C~~C~~~L-~~~~f-~~~g~~yC~~~y~~~ 117 (182)
T 2jtn_A 43 DDEGGSGGHMGSGGTPEIP--MCAGCDQHILD-RFILKALDRHWHSKCLKCSDCHVPL-AERCF-SRGESVYCKDDFFKR 117 (182)
T ss_dssp SSSCSSSSSCCCCCCCSCC--BCBTSSSBCCC-SEEEEETTEEECSSTTSCTTTCCCC-SSCCE-EETTEEECHHHHHHT
T ss_pred ccccccccccccCCCCCCC--cCccCCCCccC-ceeEEecCCeEccccCccCCCCCcc-CCCce-eECCEeeecCccccc
Confidence 45678887775 23334 89999999987 4567899999999999999999999 44444 789999999999999
Q ss_pred hcccCCCeeeecCCeecchhhHHHHHHHHhhcCCCCc
Q psy12215 108 QVFCVGDRFYLCDNKILCEYDYEERQVFANIAYNPSS 144 (155)
Q Consensus 108 ~~~~~~~~c~~c~~~i~c~~~~~~~~~~~~~~~hp~~ 144 (155)
+ +++|..|.++|.... ..+.+.+..||+..
T Consensus 118 f----~~kC~~C~~~I~~~~---~v~~a~~~~~H~~C 147 (182)
T 2jtn_A 118 F----GTKCAACQLGIPPTQ---VVRRAQDFVYHLHC 147 (182)
T ss_dssp T----SCCCTTTCCCCCSSC---CCCEETTEECCTTT
T ss_pred c----ccccccCCCccCCCc---eEEecCCCCEEeCC
Confidence 9 999999999997311 12246778999864
No 25
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.63 E-value=4.2e-17 Score=116.93 Aligned_cols=88 Identities=24% Similarity=0.467 Sum_probs=75.1
Q ss_pred cccccccccccCceEEeccCccccccccccccCCccccc-CCeEEeeCCeeecHHhHHhhhcccCCC--eeeecCCeecc
Q psy12215 49 YCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCV-GDRFYLCDNKILCEYDYEERQVFCVGD--RFYLCDNKILC 125 (155)
Q Consensus 49 ~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~-~~~~~~~~~~~~C~~c~~~~~~~~~~~--~c~~c~~~i~c 125 (155)
+|.+|+++|.+ ..++.+.++.||++||+|..|+++|.. +..|+.++|++||..||.+++ ++ +|..|.++|..
T Consensus 7 ~C~~C~~~I~~-~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~----~~~~~C~~C~~~I~~ 81 (188)
T 1rut_X 7 RCAGCGGKIAD-RFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLF----GNSGACSACGQSIPA 81 (188)
T ss_dssp BBTTTCCBCCC-SEEEEETTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHH----SCCEECTTTCCEECT
T ss_pred cCccCCCEeCC-ceeEEecCcEecccCcccCCCCcccccCCceEEEeCCcccccccccccc----ccCCccccCCCcccc
Confidence 89999999986 457789999999999999999999944 578999999999999999999 77 79999999972
Q ss_pred hhhHHHHHHHHhhcCCCCc
Q psy12215 126 EYDYEERQVFANIAYNPSS 144 (155)
Q Consensus 126 ~~~~~~~~~~~~~~~hp~~ 144 (155)
. +..+.+.++.|||..
T Consensus 82 ~---e~~i~a~~~~~H~~C 97 (188)
T 1rut_X 82 S---ELVMRAQGNVYHLKC 97 (188)
T ss_dssp T---SEEEEETTEEECGGG
T ss_pred C---cEEEEcCCCEEeCCC
Confidence 1 123456788999864
No 26
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.63 E-value=2.4e-16 Score=97.00 Aligned_cols=70 Identities=17% Similarity=0.340 Sum_probs=62.4
Q ss_pred cccccccccccCceEEeccCccccccccccccCCcccccCCeEEeeCCeeecH-HhHHhhhcccCCCeeeecCCeec
Q psy12215 49 YCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCE-YDYEERQVFCVGDRFYLCDNKIL 124 (155)
Q Consensus 49 ~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~-~c~~~~~~~~~~~~c~~c~~~i~ 124 (155)
+|.+|+++|.+.+ .+.+.++.||++||+|..|+++| .+..|+..++.+||. .||.+++ +++|..|++.+.
T Consensus 2 ~C~~C~~~I~~~~-~v~a~~~~~H~~CF~C~~C~~~L-~~~~~~~~~g~~yC~~~cy~~~f----~~~C~~C~~~~~ 72 (76)
T 1iml_A 2 KCPKCDKEVYFAE-RVTSLGKDWHRPCLKCEKCGKTL-TSGGHAEHEGKPYCNHPCYSAMF----GPKGFGRGGAES 72 (76)
T ss_dssp BCTTTSSBCCGGG-EEEETTEEEETTTCBCTTTCCBC-CTTTEEEETTEEEETTTHHHHHS----SCCCSSCCCSSS
T ss_pred cCCCCCCEEECce-EEEECCccccCCCCCccccCccC-CCCceECcCCeEeeCHHHHHHHh----CccCCCcCCcee
Confidence 7999999998644 56888999999999999999999 556799999999999 6999999 999999987654
No 27
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.62 E-value=2.4e-16 Score=97.18 Aligned_cols=64 Identities=25% Similarity=0.622 Sum_probs=57.2
Q ss_pred cccccccccccCceEEeccCccccccccccccCCcccccCCeEEeeCCeeecHHhHHhhhcccCCCeee
Q psy12215 49 YCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFCVGDRFY 117 (155)
Q Consensus 49 ~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~~~~~c~ 117 (155)
+|.+|+++|.+.+.++.+.++.||++||+|..|+++| .+..|+..+|++||+.||.+++ +++|.
T Consensus 13 ~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L-~~~~~~~~~g~~yC~~~y~~~f----~~~C~ 76 (77)
T 1g47_A 13 TCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQF-PEGLFYEFEGRKYCEHDFQMLF----APCWI 76 (77)
T ss_dssp BCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCC-GGGCSEEETTEEECHHHHHHHC----CCC--
T ss_pred CchhcCCccCCCceEEEeCccEeccccCeECCCCCCC-CCCCeEeECCeEeCHHHHHHHh----hcccC
Confidence 8999999998767888999999999999999999999 5557899999999999999999 88875
No 28
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.61 E-value=5.3e-16 Score=94.48 Aligned_cols=59 Identities=27% Similarity=0.569 Sum_probs=54.7
Q ss_pred ccccccccccc--CceEEeccCccccccccccccCCcccccCCeEEeeCCeeecHHhHHhhh
Q psy12215 49 YCAACTKVIPA--FEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQ 108 (155)
Q Consensus 49 ~C~~C~~~I~~--~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~ 108 (155)
+|.+|+++|.+ ++.++.+.++.||++||+|..|+++| .+..|+.+++++||..||.+++
T Consensus 7 ~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L-~~~~f~~~~g~~yC~~c~~~~~ 67 (72)
T 1x4l_A 7 GCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSL-VGRGFLTERDDILCPDCGKDIS 67 (72)
T ss_dssp SBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBC-TTSCCEECSSSEECHHHHHTCC
T ss_pred CCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcC-CCCccEeECCEEEChhHcCccc
Confidence 89999999986 45788999999999999999999999 6788999999999999999988
No 29
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.60 E-value=2e-16 Score=105.92 Aligned_cols=71 Identities=24% Similarity=0.427 Sum_probs=64.3
Q ss_pred cccccccccccCceEEeccCccccccccccccCCccccc-CCeEEeeCCeeecHHhHHhhhcccCCC--eeeecCCeec
Q psy12215 49 YCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCV-GDRFYLCDNKILCEYDYEERQVFCVGD--RFYLCDNKIL 124 (155)
Q Consensus 49 ~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~-~~~~~~~~~~~~C~~c~~~~~~~~~~~--~c~~c~~~i~ 124 (155)
+|.+|+++|.+. .++.+.++.||++||+|..|+++|.. +..|+.++|++||..||.+++ ++ +|..|+++|.
T Consensus 7 ~C~~C~~~I~~~-~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f----~~~~~C~~C~~~I~ 80 (122)
T 1m3v_A 7 RCAGCGGKIADR-FLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLF----GNSGAGGSGGHMGS 80 (122)
T ss_dssp CBSSSSSCCCSS-CCEEETTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHH----CCCCSSSCSSCCSC
T ss_pred CCcccCCEeCCc-EEEEECCceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHc----CCCCccccCCCCcC
Confidence 899999999873 45789999999999999999999942 467999999999999999999 88 9999999998
No 30
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.60 E-value=9e-16 Score=97.45 Aligned_cols=74 Identities=22% Similarity=0.305 Sum_probs=63.5
Q ss_pred ecccchhccccccccccccccccccCceEEeccCccccccccccccCCcccccCCeEEeeCCeeecHHhHHhhhcccCCC
Q psy12215 35 LCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFCVGD 114 (155)
Q Consensus 35 ~C~~c~~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~~~~ 114 (155)
..+..+...+.+ +|.+|+++|.+ .++.+.++.||++||+|..|+++| .+..|+..++++||..||.+++ ++
T Consensus 15 ~~~~~~~~~~~~--~C~~C~~~I~~--~~v~a~~~~~H~~CF~C~~C~~~L-~~~~f~~~~g~~yC~~cy~~~f----~~ 85 (90)
T 2dar_A 15 RAEHIPAGKRTP--MCAHCNQVIRG--PFLVALGKSWHPEEFNCAHCKNTM-AYIGFVEEKGALYCELCYEKFF----AS 85 (90)
T ss_dssp CCEEECTTTCCC--BBSSSCCBCCS--CEEEETTEEECTTTCBCSSSCCBC-SSSCBEESSSCEECHHHHHHHT----SC
T ss_pred hcccCCCCCCCC--CCccCCCEecc--eEEEECCccccccCCccCCCCCCC-CCCEeEeECCEEECHHHHHHHc----CC
Confidence 344445666777 89999999964 577899999999999999999999 5677999999999999999999 88
Q ss_pred eee
Q psy12215 115 RFY 117 (155)
Q Consensus 115 ~c~ 117 (155)
+|.
T Consensus 86 ~c~ 88 (90)
T 2dar_A 86 GPS 88 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 775
No 31
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.60 E-value=9.7e-16 Score=91.74 Aligned_cols=61 Identities=30% Similarity=0.630 Sum_probs=55.0
Q ss_pred cccccccccccccccccCceEEeccCccccccccccccCCcccccCCeEEeeCCeeecHHhHHhhh
Q psy12215 43 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQ 108 (155)
Q Consensus 43 ~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~ 108 (155)
++++ +|++|+++|.+ .++.+.++.||++||+|..|+++| .+..|+..++.+||..||.+++
T Consensus 3 ~~~~--~C~~C~~~I~~--~~~~a~~~~~H~~CF~C~~C~~~L-~~~~~~~~~g~~yC~~~y~~~f 63 (66)
T 1nyp_A 3 MGVP--ICGACRRPIEG--RVVNAMGKQWHVEHFVCAKCEKPF-LGHRHYERKGLAYCETHYNQLF 63 (66)
T ss_dssp CCCC--EETTTTEECCS--CEECCTTSBEETTTCBCTTTCCBC-SSSCCEEETTEEECHHHHHHHC
T ss_pred cCCC--CCcccCCEecc--eEEEECccccccCcCEECCCCCCC-CCCceEeECCcEECHHHHHHHh
Confidence 3455 89999999984 578999999999999999999999 6778999999999999999988
No 32
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.60 E-value=6.7e-16 Score=93.24 Aligned_cols=62 Identities=23% Similarity=0.591 Sum_probs=56.8
Q ss_pred cccccccccccCceEEeccCccccccccccccCCcccccCCeEEeeCCeeecHHhHHhhhcccCCCeee
Q psy12215 49 YCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFCVGDRFY 117 (155)
Q Consensus 49 ~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~~~~~c~ 117 (155)
+|..|+++|.+ + .+.+.++.||++||+|..|+++| .+..|+..++++||..||.+++ +++|.
T Consensus 7 ~C~~C~~~I~~-~-~~~a~~~~~H~~CF~C~~C~~~L-~~~~~~~~~~~~yC~~cy~~~f----~~~C~ 68 (69)
T 2cur_A 7 GCVKCNKAITS-G-GITYQDQPWHADCFVCVTCSKKL-AGQRFTAVEDQYYCVDCYKNFV----SGPSS 68 (69)
T ss_dssp CCSSSCCCCCT-T-CEEETTEEECTTTTBCTTTCCBC-TTSCEEECSSCEEEHHHHHHHH----TCSCC
T ss_pred CCcccCCEeCc-c-eEEECccccccCcCEECCCCCCC-CCCccEeECCEEECHHHhHHHh----cCCCC
Confidence 89999999986 3 57899999999999999999999 6778999999999999999999 88875
No 33
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.59 E-value=5.9e-16 Score=96.40 Aligned_cols=67 Identities=21% Similarity=0.518 Sum_probs=54.2
Q ss_pred cccccccccccCceEEeccCccccccccccccCCcccccCCeEEeeCCeeecHHhHHhhhcccCCCeeeecCC
Q psy12215 49 YCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFCVGDRFYLCDN 121 (155)
Q Consensus 49 ~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~~~~~c~~c~~ 121 (155)
+|..|+++|.+.+ .+.+.++.||++||+|..|+++| .+..|+..++++||..||.+++ +++|..|++
T Consensus 9 ~C~~C~~~I~~~~-~~~a~~~~~H~~CF~C~~C~~~L-~~~~~~~~~~~~yC~~cy~~~f----~~~c~gcg~ 75 (81)
T 1a7i_A 9 KCGACGRTVYHAE-EVQCDGRSFHRCCFLCMVCRKNL-DSTTVAIHDAEVYCKSCYGKKY----GPKGYGYGQ 75 (81)
T ss_dssp BCSSSCCBCSSTT-EEEETTEEEESSSEECSSSCCEE-CSSCCEEETTEEECSHHHHHHC----C--------
T ss_pred cCcCcCccccCce-eEEeCCcccccccCccCCCCCCC-CCCCeEeeCCEEECHHHHHHHh----CCcccccCC
Confidence 8999999998645 67899999999999999999999 6667999999999999999999 999999875
No 34
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.59 E-value=1e-15 Score=92.91 Aligned_cols=64 Identities=25% Similarity=0.590 Sum_probs=56.9
Q ss_pred ccccccccccccccccccCceEEeccCccccccccccccCCcccccCCeEEeeCCeeecHHhHHhhh
Q psy12215 42 RLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQ 108 (155)
Q Consensus 42 ~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~ 108 (155)
..+++ +|.+|+++|.+.+.++.+.++.||++||+|..|+++|. +..|+..+|++||..||.++|
T Consensus 8 ~~~~~--~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~-~~~~~~~~g~~yC~~~y~~lf 71 (72)
T 3f6q_B 8 GSASA--TCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFP-EGLFYEFEGRKYCEHDFQMLF 71 (72)
T ss_dssp CCTTC--BCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCG-GGCCEEETTEEECHHHHHHHT
T ss_pred CcCCc--cchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCC-CCCeEeECCeEeCHHHHHHhh
Confidence 35566 89999999998777888999999999999999999994 447889999999999999887
No 35
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.59 E-value=8.2e-16 Score=93.09 Aligned_cols=65 Identities=23% Similarity=0.458 Sum_probs=57.9
Q ss_pred ccccccccccccccccCceEEeccCccccccccccccCCcccccCCeEEeeCCeeecHHhHHhhhcccCCCeee
Q psy12215 44 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFCVGDRFY 117 (155)
Q Consensus 44 ~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~~~~~c~ 117 (155)
+++ +|.+|+++|.+ ..+.+.++.||++||+|..|+++| .+..|+..++++||..||.+++ +++|.
T Consensus 4 ~~~--~C~~C~~~I~~--~~~~a~~~~~H~~CF~C~~C~~~L-~~~~~~~~~~~~yC~~cy~~~f----~~~c~ 68 (70)
T 2d8z_A 4 GSS--GCVQCKKPITT--GGVTYREQPWHKECFVCTACRKQL-SGQRFTARDDFAYCLNCFCDLY----ASGPS 68 (70)
T ss_dssp CCC--BCSSSCCBCCS--SEEESSSSEEETTTSBCSSSCCBC-TTSCCEESSSSEECHHHHHHHT----CCCCT
T ss_pred CCC--CCcccCCeecc--ceEEECccccCCCCCccCCCCCcC-CcCceEeeCCeEECHHHHHHHh----ccccC
Confidence 445 89999999986 357899999999999999999999 6778999999999999999999 88764
No 36
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.59 E-value=3.5e-16 Score=104.90 Aligned_cols=81 Identities=47% Similarity=0.846 Sum_probs=69.0
Q ss_pred hhccccccccccccccccccCceEEeccCccccccccccccCCcccccCCeEEeeCCeeecHHhHHhhhcccCCCeeeec
Q psy12215 40 YLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFCVGDRFYLC 119 (155)
Q Consensus 40 ~~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~~~~~c~~c 119 (155)
|.++|+++.+|..|+++|.+.+.++.+.++.||+.||+|..|+++|..+..|+..++.+||..||.+++ +++|..+
T Consensus 1 Y~r~fg~~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~----~~~~~~~ 76 (123)
T 2l3k_A 1 YLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWT----KINGGSG 76 (123)
T ss_dssp CCSSSSSSCCCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHH----HHHTCCC
T ss_pred ChhhhCCCCcccCCCCeecCCceEEEECCcccccccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHh----ccccCCC
Confidence 456666545799999999976778899999999999999999999966778999999999999999998 7777776
Q ss_pred CCeec
Q psy12215 120 DNKIL 124 (155)
Q Consensus 120 ~~~i~ 124 (155)
...+.
T Consensus 77 ~~~~~ 81 (123)
T 2l3k_A 77 GSGGS 81 (123)
T ss_dssp CCCSC
T ss_pred CCCCc
Confidence 65543
No 37
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.58 E-value=1.8e-15 Score=92.01 Aligned_cols=59 Identities=25% Similarity=0.616 Sum_probs=55.2
Q ss_pred cccccccccccCceEEeccCccccccccccccCCcccccCCeEEeeCCeeecHHhHHhhh
Q psy12215 49 YCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQ 108 (155)
Q Consensus 49 ~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~ 108 (155)
+|.+|+++|.+.+.++.+.++.||+.||+|..|+++| .+..|+.+++++||..||.+++
T Consensus 7 ~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L-~~~~~~~~~~~~yC~~cy~~~~ 65 (72)
T 1x61_A 7 GCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQL-RGQHFYAVERRAYCEGCYVATL 65 (72)
T ss_dssp CCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBC-TTSCEEESSSCEEEHHHHHHHH
T ss_pred CCccCCCccCCCceEEEECCCeEcccCCcccccCCcC-CcCcCEeeCCeEECHHHHHHHH
Confidence 8999999998766788999999999999999999999 7788999999999999999887
No 38
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.57 E-value=1.7e-15 Score=93.15 Aligned_cols=67 Identities=19% Similarity=0.367 Sum_probs=58.6
Q ss_pred cccccccccccccccccCceEEeccCccccccccccccCCcccccCCeEEeeCCeeecH-HhHHhhhcccCCCeee
Q psy12215 43 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCE-YDYEERQVFCVGDRFY 117 (155)
Q Consensus 43 ~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~-~c~~~~~~~~~~~~c~ 117 (155)
.+++ +|.+|+++|.+.+ .+.+.++.||++||+|..|+++| .+..|+.+++++||. .||.+++ +++|.
T Consensus 7 ~~~~--~C~~C~~~I~~~~-~v~a~~~~~H~~CF~C~~C~~~L-~~~~~~~~~g~~yC~~~cy~~~f----~~kc~ 74 (76)
T 2cu8_A 7 GMAS--KCPKCDKTVYFAE-KVSSLGKDWHKFCLKCERCSKTL-TPGGHAEHDGKPFCHKPCYATLF----GSGPS 74 (76)
T ss_dssp CCCC--BCTTTCCBCCTTT-EEEETTEEEETTTCBCSSSCCBC-CTTSCEEETTEEECTTTHHHHHS----CSSCS
T ss_pred CCCC--CCcCCCCEeECCe-EEEECCeEeeCCCCCCCCCCCcc-CCCceEeECCEEecchHHHHHhc----ccccC
Confidence 3455 8999999999645 56799999999999999999999 677899999999999 7999999 88775
No 39
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.56 E-value=2.4e-16 Score=111.16 Aligned_cols=86 Identities=19% Similarity=0.461 Sum_probs=71.5
Q ss_pred cccccccccccCceEEeccCccccccccccccCCcccccCCeEEeeCCeeecHHhHHhhhcccCCCeeeecCCeecchhh
Q psy12215 49 YCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFCVGDRFYLCDNKILCEYD 128 (155)
Q Consensus 49 ~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~~~~~c~~c~~~i~c~~~ 128 (155)
+|.+|+++|.+ ..++.+.++.||+.||+|..|+++| .+.. +.++|++||..||.+++ +++|..|+++|....
T Consensus 8 ~C~~C~~~I~~-~~~~~a~~~~wH~~CF~C~~C~~~L-~~~~-f~~~g~~yC~~~y~~~f----~~~C~~C~~~I~~~~- 79 (169)
T 2rgt_A 8 MCAGCDQHILD-RFILKALDRHWHSKCLKCSDCHVPL-AERC-FSRGESVYCKDDFFKRF----GTKCAACQLGIPPTQ- 79 (169)
T ss_dssp BBSSSSSBCCS-SSCEECSSCEECTTTSBCTTTCCBC-CSCC-EESSSCEECHHHHHHHH----SCBCTTTCCBCCTTS-
T ss_pred ccccCCCccCC-cEEEEECCcEEccccCccCCCCCcC-CCCC-cccCCeeeecccccccc----cccccccccccCCCc-
Confidence 89999999986 4467899999999999999999999 4444 47899999999999999 999999999997211
Q ss_pred HHHHHHHHhhcCCCCc
Q psy12215 129 YEERQVFANIAYNPSS 144 (155)
Q Consensus 129 ~~~~~~~~~~~~hp~~ 144 (155)
..+.+.+..||+..
T Consensus 80 --~v~~a~~~~~H~~C 93 (169)
T 2rgt_A 80 --VVRRAQDFVYHLHC 93 (169)
T ss_dssp --EEEEETTEEEEGGG
T ss_pred --EEEEcCCceEeeCC
Confidence 11246678999863
No 40
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.55 E-value=3.2e-15 Score=91.33 Aligned_cols=62 Identities=26% Similarity=0.505 Sum_probs=55.7
Q ss_pred cccccccccccccccccCceEEeccCccccccccccccCCcccccCCeEEeeCCeeecHHhHHhhh
Q psy12215 43 LFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQ 108 (155)
Q Consensus 43 ~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~ 108 (155)
++++ +|++|+++|.+ .++.+.++.||++||+|..|+++|..+..|+..++++||..||.+.+
T Consensus 3 ~~~~--~C~~C~~~I~~--~~v~a~~~~wH~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~ 64 (73)
T 1wig_A 3 SGSS--GCDSCEKYITG--RVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAAR 64 (73)
T ss_dssp CSCC--SCSSSCCCCSS--CCBCCSSCCBCTTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTS
T ss_pred cCcC--CcccCCCEecC--eeEEeCCCCCCCCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhh
Confidence 4566 89999999986 57789999999999999999999944788999999999999999876
No 41
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.54 E-value=7.4e-16 Score=110.73 Aligned_cols=59 Identities=20% Similarity=0.546 Sum_probs=53.0
Q ss_pred ccccccccccccCceEEeccCccccccccccccCCcccccCCeEEeeCCeeecHHhHHhhh
Q psy12215 48 GYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQ 108 (155)
Q Consensus 48 ~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~ 108 (155)
.+|..|+++|...+ .+.+.++.||++||+|..|+++| .+..|+.+++++||+.||.+++
T Consensus 8 ~~C~~C~~~I~~~~-~v~a~g~~wH~~CF~C~~C~~~L-~~~~~~~~~g~~yC~~cy~~~f 66 (192)
T 1b8t_A 8 KKCGVCQKAVYFAE-EVQCEGSSFHKSCFLCMVCKKNL-DSTTVAVHGDEIYCKSCYGKKY 66 (192)
T ss_dssp EECTTTCCEECSSC-CEEETTEEECTTTCBCTTTCCBC-CSSSEEEETTEEEEHHHHHHHH
T ss_pred CcCccCCCeeccee-EEEeCCceecCCCCcCcccCCcC-CCCeeEecCCEeeChhhhHhhc
Confidence 38999999998644 55789999999999999999999 5667999999999999999998
No 42
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.54 E-value=5.6e-15 Score=88.20 Aligned_cols=58 Identities=22% Similarity=0.548 Sum_probs=52.8
Q ss_pred cccccccccccCceEEeccCcccc--ccccccccCCcccccCCeEEeeCCeeec-HHhHHhh
Q psy12215 49 YCAACTKVIPAFEMVMRAKNNVYH--LECFACQQCNHRFCVGDRFYLCDNKILC-EYDYEER 107 (155)
Q Consensus 49 ~C~~C~~~I~~~~~~~~~~~~~~H--~~Cf~C~~C~~~l~~~~~~~~~~~~~~C-~~c~~~~ 107 (155)
+|.+|+++|.+++..+.+.++.|| ++||+|..|+++| .+..|+.++|++|| ..||.++
T Consensus 4 ~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L-~~~~f~~~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 4 VCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCL-IGQKFMPVEGMVFCSVECKKRM 64 (65)
T ss_dssp ECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBC-TTSCCEEETTEEESSHHHHHTT
T ss_pred CCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcC-CCCceEEECCEEecCHHHhhhh
Confidence 899999999975578899999999 9999999999999 78889999999999 8998754
No 43
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.53 E-value=4.7e-15 Score=92.15 Aligned_cols=62 Identities=29% Similarity=0.581 Sum_probs=55.3
Q ss_pred cccccccccccCceEEeccCccccccccccccCCcccccCCeEEeeCCeeecHHhHHhhhcccCCCeee
Q psy12215 49 YCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFCVGDRFY 117 (155)
Q Consensus 49 ~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~~~~~c~ 117 (155)
+|.+|+++|.+. ..+.+.++.||++||+|..|+++| .+ .|+.+++++||..||.+++ +++|.
T Consensus 17 ~C~~C~~~I~~~-~~v~a~~~~wH~~CF~C~~C~~~L-~~-~~~~~~g~~yC~~~y~~~f----g~~C~ 78 (80)
T 2dj7_A 17 HCAGCKEEIKHG-QSLLALDKQWHVSCFKCQTCSVIL-TG-EYISKDGVPYCESDYHAQF----GSGPS 78 (80)
T ss_dssp CCTTTCCCCSSS-CCEEETTEEECTTTCBCSSSCCBC-SS-CCEEETTEEECTTHHHHHT----TCCST
T ss_pred CCcCcCCeeCCC-eEEEECCcccccccCCcCcCCCCc-CC-CeEEECCEEECHHHHHHHc----CCCCC
Confidence 799999999864 456889999999999999999999 44 6899999999999999999 88774
No 44
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.52 E-value=1.5e-14 Score=87.43 Aligned_cols=57 Identities=28% Similarity=0.561 Sum_probs=52.4
Q ss_pred cccccccccccCceEEeccCccccccccccccCCcccccCCeEEeeCCeeecHHhHHhhh
Q psy12215 49 YCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQ 108 (155)
Q Consensus 49 ~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~ 108 (155)
+|..|+++|.+ .++.+.++.||++||+|..|+++| .+..|+.+++++||..||.+++
T Consensus 7 ~C~~C~~~I~~--~~~~a~~~~~H~~CF~C~~C~~~L-~~~~f~~~~g~~yC~~c~~~~~ 63 (70)
T 2d8x_A 7 GCHQCGEFIIG--RVIKAMNNSWHPECFRCDLCQEVL-ADIGFVKNAGRHLCRPCHNREK 63 (70)
T ss_dssp BCSSSCCBCCS--CCEEETTEEECTTTSBCSSSCCBC-SSSCCEEETTEEECHHHHHHHH
T ss_pred cCccCCCEecc--eEEEECcccccccCCEeCCCCCcC-CCCccEeECCeEECHHHhhhhc
Confidence 89999999985 567899999999999999999999 5567889999999999999998
No 45
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.51 E-value=1.6e-14 Score=91.41 Aligned_cols=62 Identities=24% Similarity=0.614 Sum_probs=55.5
Q ss_pred cccccccccccCceEEeccCccccccccccccCCcccccCCeEEeeCCeeecHHhHHhhhcccCCCeee
Q psy12215 49 YCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFCVGDRFY 117 (155)
Q Consensus 49 ~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~~~~~c~ 117 (155)
+|..|+++|.+ .++.+.++.||++||+|..|++.| .+..|+..++.+||..||.+++ ++++.
T Consensus 27 ~C~~C~~~I~~--~~~~a~~~~~H~~CF~C~~C~~~L-~~~~~~~~~g~~yC~~~y~~~f----~p~~~ 88 (89)
T 1x64_A 27 LCDKCGSGIVG--AVVKARDKYRHPECFVCADCNLNL-KQKGYFFVEGELYCETHARART----SGPSS 88 (89)
T ss_dssp BCTTTCCBCCS--CCEESSSCEECTTTCCCSSSCCCT-TTSCCEEETTEEECHHHHHHHS----SSCCC
T ss_pred CcccCCCEecc--cEEEECCceECccCCEecCCCCCC-CCCCeEeECCEEECHHHHHHHh----CCCCC
Confidence 79999999986 567899999999999999999999 5667889999999999999998 66543
No 46
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.50 E-value=7.5e-15 Score=90.24 Aligned_cols=54 Identities=24% Similarity=0.417 Sum_probs=48.6
Q ss_pred CCCccccccCcccccCCcccccCCCeEEEeCCeeecc-cchhccccccccccccccccc
Q psy12215 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCK-RDYLRLFGTTGYCAACTKVIP 58 (155)
Q Consensus 1 A~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~-~c~~~~~~~~~~C~~C~~~I~ 58 (155)
|+|+.||++||+|+.|+++|.. ..|+.++|++||+ .||.++|++ +|.+|++.+.
T Consensus 18 a~~~~~H~~CF~C~~C~~~L~~--~~~~~~~g~~yC~~~cy~~~f~~--~C~~C~~~~~ 72 (76)
T 1iml_A 18 SLGKDWHRPCLKCEKCGKTLTS--GGHAEHEGKPYCNHPCYSAMFGP--KGFGRGGAES 72 (76)
T ss_dssp ETTEEEETTTCBCTTTCCBCCT--TTEEEETTEEEETTTHHHHHSSC--CCSSCCCSSS
T ss_pred ECCccccCCCCCccccCccCCC--CceECcCCeEeeCHHHHHHHhCc--cCCCcCCcee
Confidence 5789999999999999999953 4699999999999 699999999 9999987664
No 47
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.50 E-value=1.3e-14 Score=96.00 Aligned_cols=67 Identities=25% Similarity=0.579 Sum_probs=59.1
Q ss_pred cccccccccccCceEEeccCccccccccccccCCccccc-CCeEEeeCCeeecHHhHHhhhcccCCCeeeecC
Q psy12215 49 YCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCV-GDRFYLCDNKILCEYDYEERQVFCVGDRFYLCD 120 (155)
Q Consensus 49 ~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~-~~~~~~~~~~~~C~~c~~~~~~~~~~~~c~~c~ 120 (155)
+|.+|+++|.+ ..++.+.++.||+.||+|..|+++|.. +..|+.+++++||+.||.+++ +++|..|.
T Consensus 5 ~C~~C~~~I~~-~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f----~~~c~~c~ 72 (114)
T 1j2o_A 5 TCGGCQQNIGD-RYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLG----GSGGHMGS 72 (114)
T ss_dssp CBSSSCSCBCS-SEEEECSSSEECTTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHH----TSCCSSCB
T ss_pred CCcCCCCeeCC-cEEEEECchhHHHhcCcccccCCchhcCCCeeEEECCeeechHHHHHHh----CcccCcCC
Confidence 89999999986 457889999999999999999999942 368999999999999999999 88876653
No 48
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.49 E-value=1.2e-14 Score=92.31 Aligned_cols=66 Identities=21% Similarity=0.551 Sum_probs=58.4
Q ss_pred cccccccccccCceEEeccCccccccccccccCCcccccCCeEEeeCCeeecHHhHHhhhcccCCCeeeecC
Q psy12215 49 YCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFCVGDRFYLCD 120 (155)
Q Consensus 49 ~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~~~~~c~~c~ 120 (155)
+|..|+++|.+.+ .+.+.++.||++||+|..|+++| .+..|+..++++||..||.+++ +++|..+.
T Consensus 17 ~C~~C~~~I~~~~-~v~a~~~~~H~~CF~C~~C~~~L-~~~~~~~~~g~~yC~~~y~~~f----~~kc~~~~ 82 (91)
T 2d8y_A 17 TCVECQKTVYPME-RLLANQQVFHISCFRCSYCNNKL-SLGTYASLHGRIYCKPHFNQLF----KSKGNYDE 82 (91)
T ss_dssp BCTTTCCBCCTTS-EEECSSSEEETTTCBCTTTCCBC-CTTTCCCSSSCCCCHHHHHHHS----CCCSCCCS
T ss_pred cCccCCCccCCce-eEEECCCEECCCCCeeCCCCCCC-CCCCcEeECCEEECHHHHHHHh----CCCcCccC
Confidence 8999999998755 45899999999999999999999 5556889999999999999999 88887544
No 49
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.49 E-value=7.9e-15 Score=90.84 Aligned_cols=61 Identities=21% Similarity=0.582 Sum_probs=54.9
Q ss_pred cccccccccccCceEEeccCccccccccccccCCcccccCCeEEeeCCeeecHHhHHhhhcccCCCee
Q psy12215 49 YCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFCVGDRF 116 (155)
Q Consensus 49 ~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~~~~~c 116 (155)
+|.+|+++|.+ .++.+.++.||+.||+|..|+++| .+..|+.+++++||..||.+++ +++.
T Consensus 17 ~C~~C~~~I~~--~~~~a~~~~~H~~CF~C~~C~~~L-~~~~~~~~~g~~yC~~cy~~~~----~p~g 77 (79)
T 1x62_A 17 MCDKCGTGIVG--VFVKLRDRHRHPECYVCTDCGTNL-KQKGHFFVEDQIYCEKHARERV----SGPS 77 (79)
T ss_dssp CCSSSCCCCCS--SCEECSSCEECTTTTSCSSSCCCH-HHHCCEESSSCEECHHHHHHHH----SSCC
T ss_pred ccccCCCCccC--cEEEECcceeCcCcCeeCCCCCCC-CCCCeEeECCEEECHHHHHHHh----CCCC
Confidence 89999999986 478999999999999999999999 5667889999999999999998 6654
No 50
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.47 E-value=1.7e-14 Score=88.67 Aligned_cols=50 Identities=22% Similarity=0.524 Sum_probs=45.6
Q ss_pred CCCccccccCcccccCCcccccCCCeEEEeCCeeecccchhccccccccccccc
Q psy12215 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACT 54 (155)
Q Consensus 1 A~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~c~~~~~~~~~~C~~C~ 54 (155)
|+++.||++||+|+.|+++|. +..|+.+++++||+.||.++|++ +|+.++
T Consensus 26 a~~~~wH~~CF~C~~C~~~L~--~~~f~~~~g~~yC~~cy~~~f~~--~C~~~s 75 (76)
T 1x68_A 26 FQDSQWHSECFNCGKCSVSLV--GKGFLTQNKEIFCQKCGSGMDTD--ISGPSS 75 (76)
T ss_dssp ETTEEEEGGGCBCTTTCCBCS--SSCEEEETTEEEETTTTCCCCCC--SSSSSC
T ss_pred ECCcccCcccCChhhCCCcCC--CCceEeECCEEECHHHhhhhhCC--cCCCCC
Confidence 578999999999999999995 56799999999999999999999 898764
No 51
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.47 E-value=4e-14 Score=87.70 Aligned_cols=56 Identities=21% Similarity=0.485 Sum_probs=50.3
Q ss_pred cccccccccccCceEEeccCccccccccccccCCcccccCCeEEeeCCeeecHHhHHhhh
Q psy12215 49 YCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQ 108 (155)
Q Consensus 49 ~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~ 108 (155)
+|.+|+++|.+ ..+.+.++.||++||+|..|+++| .+.. +.+++.+||..||.+++
T Consensus 17 ~C~~C~~~I~~--~~v~a~~~~~H~~CF~C~~C~~~L-~~~~-f~~~g~~yC~~cy~~~f 72 (79)
T 2cor_A 17 ICQKCHAIIDE--QPLIFKNDPYHPDHFNCANCGKEL-TADA-RELKGELYCLPCHDKMG 72 (79)
T ss_dssp BCTTTCCBCCS--CCCCCSSSCCCTTTSBCSSSCCBC-CTTC-EEETTEEECHHHHHTTS
T ss_pred CCccCCCEecc--eEEEECcceeCCCCCEeCCCCCcc-CCCC-EeECCEEeCHHHHHHhC
Confidence 89999999984 567899999999999999999999 4554 48899999999999988
No 52
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.45 E-value=1.5e-14 Score=90.00 Aligned_cols=53 Identities=19% Similarity=0.316 Sum_probs=39.6
Q ss_pred CCCccccccCcccccCCcccccCCCeEEEeCCeeecccchhcccccccccccccccc
Q psy12215 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVI 57 (155)
Q Consensus 1 A~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~c~~~~~~~~~~C~~C~~~I 57 (155)
|+++.||++||+|+.|+++|. +..|+.+++++||+.||.++|++ +|.+|++..
T Consensus 25 a~~~~~H~~CF~C~~C~~~L~--~~~~~~~~~~~yC~~cy~~~f~~--~c~gcg~g~ 77 (81)
T 1a7i_A 25 CDGRSFHRCCFLCMVCRKNLD--STTVAIHDAEVYCKSCYGKKYGP--KGYGYGQGA 77 (81)
T ss_dssp ETTEEEESSSEECSSSCCEEC--SSCCEEETTEEECSHHHHHHCC------------
T ss_pred eCCcccccccCccCCCCCCCC--CCCeEeeCCEEECHHHHHHHhCC--cccccCCcc
Confidence 578999999999999999995 34699999999999999999999 999998754
No 53
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.44 E-value=5.3e-14 Score=94.22 Aligned_cols=59 Identities=27% Similarity=0.600 Sum_probs=53.2
Q ss_pred cccccccccccCceEEeccCccccccccccccCCccccc-CCeEEeeCCeeecHHhHHhhh
Q psy12215 49 YCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCV-GDRFYLCDNKILCEYDYEERQ 108 (155)
Q Consensus 49 ~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~-~~~~~~~~~~~~C~~c~~~~~ 108 (155)
+|.+|+++|.+ ..++.+.++.||+.||+|..|+++|.. +..|+.++|++||+.||.++|
T Consensus 63 ~C~~C~~~I~~-~~~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~~F 122 (123)
T 2l4z_A 63 RCAGCGGKIAD-RFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLF 122 (123)
T ss_dssp BBSSSSSBCCS-SSEEEETTEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHHHHC
T ss_pred cCcCCCCCcCC-cEEEEeCCcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHhhhhc
Confidence 89999999986 446789999999999999999999942 578999999999999999987
No 54
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.43 E-value=6.2e-14 Score=85.13 Aligned_cols=48 Identities=23% Similarity=0.481 Sum_probs=43.4
Q ss_pred CCCccccccCcccccCCcccccCCCeEEEeCCeeecccchhccccccccccc
Q psy12215 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAA 52 (155)
Q Consensus 1 A~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~c~~~~~~~~~~C~~ 52 (155)
|+|+.||++||+|+.|+++|. +..|+.+++++||+.||.++|++ +|+.
T Consensus 24 a~~~~~H~~CF~C~~C~~~L~--~~~~~~~~~~~yC~~cy~~~f~~--~C~~ 71 (72)
T 1wyh_A 24 YGGQTWHEHCFLCSGCEQPLG--SRSFVPDKGAHYCVPCYENKFAS--GPSS 71 (72)
T ss_dssp STTCCEETTTCBCTTTCCBTT--TSCEEEETTEEEEHHHHHHHTSC--CCCC
T ss_pred ECccccCcccCeECCCCCcCC--CCccCCcCCeEECHHHHHHHccC--cCCC
Confidence 678999999999999999995 45699999999999999999999 8863
No 55
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.43 E-value=4.1e-14 Score=85.47 Aligned_cols=48 Identities=19% Similarity=0.572 Sum_probs=43.5
Q ss_pred CCCccccccCcccccCCcccccCCCeEEEeCCeeecccchhccccccccccc
Q psy12215 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAA 52 (155)
Q Consensus 1 A~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~c~~~~~~~~~~C~~ 52 (155)
|+++.||++||+|+.|+++|. +..|+.+++++||+.||.+++++ +|++
T Consensus 22 a~~~~~H~~CF~C~~C~~~L~--~~~~~~~~~~~yC~~cy~~~f~~--~c~~ 69 (70)
T 2d8z_A 22 YREQPWHKECFVCTACRKQLS--GQRFTARDDFAYCLNCFCDLYAS--GPSS 69 (70)
T ss_dssp SSSSEEETTTSBCSSSCCBCT--TSCCEESSSSEECHHHHHHHTCC--CCTT
T ss_pred ECccccCCCCCccCCCCCcCC--cCceEeeCCeEECHHHHHHHhcc--ccCC
Confidence 689999999999999999994 45799999999999999999999 8853
No 56
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.42 E-value=4.6e-14 Score=85.07 Aligned_cols=48 Identities=23% Similarity=0.510 Sum_probs=43.5
Q ss_pred CCCccccccCcccccCCcccccCCCeEEEeCCeeecccchhccccccccccc
Q psy12215 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAA 52 (155)
Q Consensus 1 A~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~c~~~~~~~~~~C~~ 52 (155)
|+++.||++||+|+.|+++|. +..|+.+++++||+.||.++|++ +|++
T Consensus 22 a~~~~~H~~CF~C~~C~~~L~--~~~~~~~~~~~yC~~cy~~~f~~--~C~g 69 (69)
T 2cur_A 22 YQDQPWHADCFVCVTCSKKLA--GQRFTAVEDQYYCVDCYKNFVSG--PSSG 69 (69)
T ss_dssp ETTEEECTTTTBCTTTCCBCT--TSCEEECSSCEEEHHHHHHHHTC--SCCC
T ss_pred ECccccccCcCEECCCCCCCC--CCccEeECCEEECHHHhHHHhcC--CCCC
Confidence 578999999999999999995 45799999999999999999999 8863
No 57
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.40 E-value=7e-14 Score=84.87 Aligned_cols=48 Identities=23% Similarity=0.468 Sum_probs=43.3
Q ss_pred CCCccccccCcccccCCcccccCCCeEEEeCCeeecccchhccccccccccc
Q psy12215 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAA 52 (155)
Q Consensus 1 A~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~c~~~~~~~~~~C~~ 52 (155)
|+|+.||++||+|+.|+++|. +..|+.+++++||+.||.+++++ +|+.
T Consensus 24 a~~~~~H~~CF~C~~C~~~L~--~~~~~~~~~~~yC~~cy~~~f~~--~C~~ 71 (72)
T 1x4k_A 24 YKGSSWHETCFICHRCQQPIG--TKSFIPKDNQNFCVPCYEKQHAS--GPSS 71 (72)
T ss_dssp ETTEEEETTTTCCSSSCCCCC--SSSEEEETTEEEEHHHHHHHTSS--CCCC
T ss_pred ECcCeecccCCcccccCCccC--CCccCccCCeEECHHHHhHHhCC--CCCC
Confidence 578999999999999999995 45799999999999999999999 8863
No 58
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=1.8e-13 Score=85.21 Aligned_cols=48 Identities=23% Similarity=0.491 Sum_probs=43.7
Q ss_pred CCCccccccCcccccCCcccccCCCeEEEeCCeeecccchhccccccccccc
Q psy12215 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAA 52 (155)
Q Consensus 1 A~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~c~~~~~~~~~~C~~ 52 (155)
|+|+.||+.||+|+.|+++|. +..|+.+++++||+.||.+++++ +|++
T Consensus 34 a~~~~~H~~CF~C~~C~~~L~--~~~f~~~~~~~~C~~c~~~~~~~--~C~~ 81 (82)
T 2ehe_A 34 YEDRHFHEGCFRCCRCQRSLA--DEPFTCQDSELLCNDCYCSAFSS--GPSS 81 (82)
T ss_dssp CSSCCCBTTTSBCTTTCCBCS--SCCEEEETTEEEETTTSSCCGGG--SSCC
T ss_pred eCCccccccCCeecCCCCccC--CCccEeeCCEEECHHHHhhhcCC--CCCC
Confidence 679999999999999999995 45799999999999999999998 8864
No 59
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.40 E-value=1.1e-13 Score=82.65 Aligned_cols=44 Identities=30% Similarity=0.715 Sum_probs=40.6
Q ss_pred CCCccccccCcccccCCcccccCCCeEEEeCCeeecccchhccccc
Q psy12215 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGT 46 (155)
Q Consensus 1 A~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~c~~~~~~~ 46 (155)
|+|+.||++||+|+.|+++|. +..|+.++|++||+.||.++|++
T Consensus 22 a~~~~~H~~CF~C~~C~~~L~--~~~~~~~~g~~yC~~~y~~~f~~ 65 (66)
T 1nyp_A 22 AMGKQWHVEHFVCAKCEKPFL--GHRHYERKGLAYCETHYNQLFGD 65 (66)
T ss_dssp CTTSBEETTTCBCTTTCCBCS--SSCCEEETTEEECHHHHHHHCSC
T ss_pred ECccccccCcCEECCCCCCCC--CCceEeECCcEECHHHHHHHhCC
Confidence 689999999999999999995 45799999999999999999986
No 60
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.40 E-value=8e-14 Score=86.53 Aligned_cols=47 Identities=36% Similarity=0.738 Sum_probs=42.6
Q ss_pred CCCccccccCcccccCCcccccCCCeEEEeCCeeecccchhccccccccccc
Q psy12215 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAA 52 (155)
Q Consensus 1 A~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~c~~~~~~~~~~C~~ 52 (155)
|+++.||++||+|..|+++|. + .|+.+++++||+.||.++|++ +|++
T Consensus 33 a~~~~wH~~CF~C~~C~~~L~--~-~~~~~~g~~yC~~~y~~~fg~--~C~~ 79 (80)
T 2dj7_A 33 ALDKQWHVSCFKCQTCSVILT--G-EYISKDGVPYCESDYHAQFGS--GPSS 79 (80)
T ss_dssp ETTEEECTTTCBCSSSCCBCS--S-CCEEETTEEECTTHHHHHTTC--CSTT
T ss_pred ECCcccccccCCcCcCCCCcC--C-CeEEECCEEECHHHHHHHcCC--CCCC
Confidence 578999999999999999995 3 589999999999999999998 8863
No 61
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.39 E-value=1.2e-13 Score=83.84 Aligned_cols=44 Identities=27% Similarity=0.556 Sum_probs=40.7
Q ss_pred CCCccccccCcccccCCcccccCCCeEEEeCCeeecccchhccccc
Q psy12215 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGT 46 (155)
Q Consensus 1 A~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~c~~~~~~~ 46 (155)
|+|+.||++||+|+.|+++|. +..|+.+++++||+.||.++++|
T Consensus 26 a~~~~wH~~CF~C~~C~~~L~--~~~f~~~~g~~yC~~c~~~~~~p 69 (72)
T 1x4l_A 26 FEERQWHNDCFNCKKCSLSLV--GRGFLTERDDILCPDCGKDISGP 69 (72)
T ss_dssp CSSCEECTTTCBCSSSCCBCT--TSCCEECSSSEECHHHHHTCCCS
T ss_pred ECCcccCcccCEeccCCCcCC--CCccEeECCEEEChhHcCcccCC
Confidence 679999999999999999995 56799999999999999999988
No 62
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.39 E-value=8.1e-14 Score=88.33 Aligned_cols=48 Identities=19% Similarity=0.469 Sum_probs=43.4
Q ss_pred CCCccccccCcccccCCcccccCCCeEEEeCCeeecccchhccccccccccc
Q psy12215 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAA 52 (155)
Q Consensus 1 A~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~c~~~~~~~~~~C~~ 52 (155)
|+|+.||++||+|..|+++|. +..|+.+++++||+.||.++|++ +|+.
T Consensus 42 a~~~~~H~~CF~C~~C~~~L~--~~~f~~~~g~~yC~~cy~~~f~~--~c~s 89 (90)
T 2dar_A 42 ALGKSWHPEEFNCAHCKNTMA--YIGFVEEKGALYCELCYEKFFAS--GPSS 89 (90)
T ss_dssp ETTEEECTTTCBCSSSCCBCS--SSCBEESSSCEECHHHHHHHTSC--CCCC
T ss_pred ECCccccccCCccCCCCCCCC--CCEeEeECCEEECHHHHHHHcCC--CCCC
Confidence 578999999999999999995 45699999999999999999999 8863
No 63
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.38 E-value=1.3e-13 Score=84.56 Aligned_cols=48 Identities=29% Similarity=0.532 Sum_probs=43.0
Q ss_pred CCCccccccCcccccCCcccccCCCeEEEeCCeeecc-cchhccccccccccc
Q psy12215 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCK-RDYLRLFGTTGYCAA 52 (155)
Q Consensus 1 A~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~-~c~~~~~~~~~~C~~ 52 (155)
|+++.||++||+|+.|+++|. +..|+.+++++||+ +||.++|++ +|.+
T Consensus 27 a~~~~~H~~CF~C~~C~~~L~--~~~~~~~~g~~yC~~~cy~~~f~~--kc~g 75 (76)
T 2cu8_A 27 SLGKDWHKFCLKCERCSKTLT--PGGHAEHDGKPFCHKPCYATLFGS--GPSS 75 (76)
T ss_dssp ETTEEEETTTCBCSSSCCBCC--TTSCEEETTEEECTTTHHHHHSCS--SCSC
T ss_pred ECCeEeeCCCCCCCCCCCccC--CCceEeECCEEecchHHHHHhccc--ccCC
Confidence 578999999999999999995 45799999999999 799999999 8853
No 64
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.37 E-value=1e-13 Score=86.38 Aligned_cols=58 Identities=19% Similarity=0.525 Sum_probs=50.3
Q ss_pred cccccccccccCceEEeccCccccccccccccCCcccccCCeEE--eeCCeeecHHhHHhhh
Q psy12215 49 YCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFY--LCDNKILCEYDYEERQ 108 (155)
Q Consensus 49 ~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~--~~~~~~~C~~c~~~~~ 108 (155)
+|.+|+++|.+.+. +.+.++.||++||+|..|+++| ....|. .+++++||+.||.+++
T Consensus 17 ~C~~C~~~I~~~e~-v~a~~~~wH~~CF~C~~C~~~L-~~~~~~~~~~~g~~yC~~~y~~~~ 76 (82)
T 2co8_A 17 LCALCGEHLYVLER-LCVNGHFFHRSCFRCHTCEATL-WPGGYEQHPGDGHFYCLQHLPQTD 76 (82)
T ss_dssp BCSSSCCBCCTTTB-CCBTTBCCBTTTCBCSSSCCBC-CTTSEECCTTTCCCEETTTCCCCC
T ss_pred CCcccCCCcccceE-EEECCCeeCCCcCEEcCCCCCc-CCCceeEeCcCCEEEChHHHHhhh
Confidence 89999999986554 4689999999999999999999 566666 4689999999998876
No 65
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.37 E-value=1e-13 Score=85.25 Aligned_cols=47 Identities=23% Similarity=0.540 Sum_probs=41.3
Q ss_pred CCCccccccCcccccCCcccccCCCeEEEeCCeeecccchhcccccccccc
Q psy12215 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCA 51 (155)
Q Consensus 1 A~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~c~~~~~~~~~~C~ 51 (155)
|+|+.||+.||+|..|+++|.. ..|+.++|++||+.||.++|++ +|+
T Consensus 30 a~~~~~H~~CF~C~~C~~~L~~--~~~~~~~g~~yC~~~y~~~f~~--~C~ 76 (77)
T 1g47_A 30 SNGELYHEQCFVCAQCFQQFPE--GLFYEFEGRKYCEHDFQMLFAP--CWI 76 (77)
T ss_dssp ETTEEECTTTCCCTTTCCCCGG--GCSEEETTEEECHHHHHHHCCC--C--
T ss_pred eCccEeccccCeECCCCCCCCC--CCeEeECCeEeCHHHHHHHhhc--ccC
Confidence 5789999999999999999964 4699999999999999999998 775
No 66
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.36 E-value=2.8e-13 Score=83.87 Aligned_cols=48 Identities=25% Similarity=0.521 Sum_probs=43.5
Q ss_pred CCCccccccCcccccCCcccccCCCeEEEeCCeeecccchhccccccccccc
Q psy12215 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAA 52 (155)
Q Consensus 1 A~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~c~~~~~~~~~~C~~ 52 (155)
|+++.||++||+|+.|+++|. +..|+.+++++||+.||.++|++ +|+.
T Consensus 32 a~~~~~H~~CF~C~~C~~~L~--~~~~~~~~~~~yC~~cy~~~f~~--~c~s 79 (80)
T 2cuq_A 32 YRDQPWHRECLVCTGCQTPLA--GQQFTSRDEDPYCVACFGELFAS--GPSS 79 (80)
T ss_dssp SSSSEECTTTCBCSSSCCBCT--TCCEEECSSSEEEHHHHHHHTTC--STTC
T ss_pred ECCchhhhhhCCcccCCCcCC--CCeeEeECCEEECHHHHHHHcCC--CCCC
Confidence 689999999999999999994 45799999999999999999998 7853
No 67
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.34 E-value=3.9e-13 Score=84.96 Aligned_cols=47 Identities=17% Similarity=0.360 Sum_probs=42.1
Q ss_pred CCCccccccCcccccCCcccccCCCeEEEeCCeeecccchhcccccccccc
Q psy12215 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCA 51 (155)
Q Consensus 1 A~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~c~~~~~~~~~~C~ 51 (155)
|+++.||++||+|..|+++|. +..|+.+++++||+.||.++|++ ++.
T Consensus 42 a~~~~~H~~CF~C~~C~~~L~--~~~~~~~~g~~yC~~~y~~~f~p--~~~ 88 (89)
T 1x64_A 42 ARDKYRHPECFVCADCNLNLK--QKGYFFVEGELYCETHARARTSG--PSS 88 (89)
T ss_dssp SSSCEECTTTCCCSSSCCCTT--TSCCEEETTEEECHHHHHHHSSS--CCC
T ss_pred ECCceECccCCEecCCCCCCC--CCCeEeECCEEECHHHHHHHhCC--CCC
Confidence 688999999999999999995 34689999999999999999998 653
No 68
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.34 E-value=2.2e-13 Score=84.33 Aligned_cols=48 Identities=23% Similarity=0.608 Sum_probs=43.3
Q ss_pred CCCccccccCcccccCCcccccCCCeEEEeCCeeecccchhccccccccccc
Q psy12215 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAA 52 (155)
Q Consensus 1 A~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~c~~~~~~~~~~C~~ 52 (155)
|+++.||+.||+|+.|+++|.. ..|+.+++++||+.||.++|++ +|++
T Consensus 32 a~~~~~H~~CF~C~~C~~~L~~--~~~~~~~~~~yC~~~y~~~f~~--~C~~ 79 (80)
T 1x3h_A 32 AMDTVWHPECFVCGDCFTSFST--GSFFELDGRPFCELHYHHRRGS--GPSS 79 (80)
T ss_dssp ETTEEECTTTCBCSSSCCBSCS--SCCEESSSCEECHHHHHHHHSS--SCCC
T ss_pred ECCCeEecCcCChhhCCCCCCC--CcEEeECCEEECHHHHHHHcCC--CCCC
Confidence 5789999999999999999953 4699999999999999999999 8864
No 69
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.33 E-value=2.9e-13 Score=84.07 Aligned_cols=48 Identities=25% Similarity=0.526 Sum_probs=42.2
Q ss_pred CCCccccccCcccccCCcccccCCCeEEEe-CCeeecccchhccccccccccc
Q psy12215 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQK-ANLILCKRDYLRLFGTTGYCAA 52 (155)
Q Consensus 1 A~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~-~~~~~C~~c~~~~~~~~~~C~~ 52 (155)
|+++.||++||+|+.|+++|. +..|+.. ++++||+.||.++|++ +|++
T Consensus 32 a~~~~~H~~CF~C~~C~~~L~--~~~f~~~~~g~~yC~~cy~~~f~~--~C~~ 80 (81)
T 2dlo_A 32 AMGKAYHPGCFTCVVCHRGLD--GIPFTVDATSQIHCIEDFHRKFAS--GPSS 80 (81)
T ss_dssp ETTEEECTTTCBCSSSCCBCT--TSCEECCTTCCCEEHHHHHHHTTS--SSCC
T ss_pred ECCccccHHhcCcccCCCccC--CCeeEECCCCEEECHHHHHHHhcC--cCCC
Confidence 578999999999999999995 4567766 7899999999999999 8864
No 70
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.32 E-value=5.2e-13 Score=81.02 Aligned_cols=48 Identities=25% Similarity=0.593 Sum_probs=42.0
Q ss_pred CCCccccccCcccccCCcccccCCCeEEEeCCeeecccchhcccccccccccc
Q psy12215 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAAC 53 (155)
Q Consensus 1 A~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~c~~~~~~~~~~C~~C 53 (155)
|+++.||+.||+|+.|+++| .+..|+.+++++||+.||.+++.. |..+
T Consensus 24 a~~~~~H~~CF~C~~C~~~L--~~~~~~~~~~~~yC~~cy~~~~~~---~~~~ 71 (72)
T 1x61_A 24 ALDRVFHVGCFVCSTCRAQL--RGQHFYAVERRAYCEGCYVATLES---GPSS 71 (72)
T ss_dssp CSSSEECTTTCBCSSSCCBC--TTSCEEESSSCEEEHHHHHHHHHT---CSSC
T ss_pred ECCCeEcccCCcccccCCcC--CcCcCEeeCCeEECHHHHHHHHcc---CCCC
Confidence 67899999999999999999 456799999999999999998863 6543
No 71
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.32 E-value=7.6e-13 Score=82.27 Aligned_cols=47 Identities=21% Similarity=0.517 Sum_probs=42.2
Q ss_pred CCCccccccCcccccCCcccccCCCeEEEeCCeeecccchhcccccccccc
Q psy12215 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCA 51 (155)
Q Consensus 1 A~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~c~~~~~~~~~~C~ 51 (155)
|+++.||++||+|+.|+++|. +..|+.+++++||+.||.+++++ ++.
T Consensus 34 a~~~~~H~~CF~C~~C~~~L~--~~~~~~~~~~~yC~~cy~~~f~~--~~~ 80 (82)
T 1x63_A 34 YKGTVWHKDCFTCSNCKQVIG--TGSFFPKGEDFYCVTCHETKFAS--GPS 80 (82)
T ss_dssp CSSCEEETTTCCCSSSCCCCT--TSCEEEETTEEEEHHHHHHHTSC--CCS
T ss_pred ECccccccccCchhhCCCccC--CCccEeeCCEEECHHHHHHHhCC--CCC
Confidence 678999999999999999995 45799999999999999999998 553
No 72
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.31 E-value=5.2e-13 Score=80.61 Aligned_cols=44 Identities=25% Similarity=0.554 Sum_probs=40.0
Q ss_pred CCCccccccCcccccCCcccccCCCeEEEeCCeeecccchhccccc
Q psy12215 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGT 46 (155)
Q Consensus 1 A~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~c~~~~~~~ 46 (155)
|+++.||++||+|..|+++|.. ..|+.+++++||+.||.+++++
T Consensus 22 a~~~~~H~~CF~C~~C~~~L~~--~~f~~~~g~~yC~~c~~~~~~~ 65 (70)
T 2d8x_A 22 AMNNSWHPECFRCDLCQEVLAD--IGFVKNAGRHLCRPCHNREKAS 65 (70)
T ss_dssp ETTEEECTTTSBCSSSCCBCSS--SCCEEETTEEECHHHHHHHHCC
T ss_pred ECcccccccCCEeCCCCCcCCC--CccEeECCeEECHHHhhhhcCC
Confidence 5789999999999999999954 4689999999999999999886
No 73
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.31 E-value=1.2e-12 Score=80.97 Aligned_cols=43 Identities=14% Similarity=0.179 Sum_probs=38.8
Q ss_pred CCCccccccCcccccCCcccccCCCeEEEeCCeeecccchhccccc
Q psy12215 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGT 46 (155)
Q Consensus 1 A~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~c~~~~~~~ 46 (155)
|+|+.||++||+|..|+++|.. . ++.++|++||+.||.++|+|
T Consensus 32 a~~~~~H~~CF~C~~C~~~L~~--~-~f~~~g~~yC~~cy~~~f~p 74 (79)
T 2cor_A 32 FKNDPYHPDHFNCANCGKELTA--D-ARELKGELYCLPCHDKMGVS 74 (79)
T ss_dssp CSSSCCCTTTSBCSSSCCBCCT--T-CEEETTEEECHHHHHTTSCC
T ss_pred ECcceeCCCCCEeCCCCCccCC--C-CEeECCEEeCHHHHHHhCCC
Confidence 6899999999999999999963 3 35999999999999999987
No 74
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.30 E-value=2.6e-13 Score=83.89 Aligned_cols=44 Identities=18% Similarity=0.360 Sum_probs=40.5
Q ss_pred CCCccccccCcccccCCcccccCCCeEEEeCCeeecccchhccccc
Q psy12215 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGT 46 (155)
Q Consensus 1 A~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~c~~~~~~~ 46 (155)
|+++.||++||+|..|+++|. +..|+.+++++||+.||.++|++
T Consensus 32 a~~~~~H~~CF~C~~C~~~L~--~~~~~~~~g~~yC~~cy~~~~~p 75 (79)
T 1x62_A 32 LRDRHRHPECYVCTDCGTNLK--QKGHFFVEDQIYCEKHARERVSG 75 (79)
T ss_dssp CSSCEECTTTTSCSSSCCCHH--HHCCEESSSCEECHHHHHHHHSS
T ss_pred ECcceeCcCcCeeCCCCCCCC--CCCeEeECCEEECHHHHHHHhCC
Confidence 689999999999999999995 34689999999999999999988
No 75
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.27 E-value=2.1e-12 Score=78.67 Aligned_cols=45 Identities=20% Similarity=0.304 Sum_probs=40.0
Q ss_pred CCCccccccCcccccCCcccccCCCeEEEeCCeeecccchhccccc
Q psy12215 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGT 46 (155)
Q Consensus 1 A~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~c~~~~~~~ 46 (155)
|+|+.||++||+|+.|+++|.. +..|+..++++||+.||.+.+..
T Consensus 22 a~~~~wH~~CF~C~~C~~~L~~-~~~f~~~~~~~yC~~C~~~~~~~ 66 (73)
T 1wig_A 22 AGEKHYHPSCALCVRCGQMFAE-GEEMYLQGSSIWHPACRQAARTE 66 (73)
T ss_dssp CSSCCBCTTTSCCSSSCCCCCS-SCCCEEETTEEECTTHHHHTSSS
T ss_pred eCCCCCCCCcCEeCCCCCCCCC-CCeeEeeCCEEEChHHChHhhcc
Confidence 7899999999999999999952 45799999999999999987754
No 76
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.27 E-value=6.9e-13 Score=84.16 Aligned_cols=47 Identities=26% Similarity=0.533 Sum_probs=42.9
Q ss_pred CCCccccccCcccccCCcccccCCCeEEEeCCeeecccchhcccccccccc
Q psy12215 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCA 51 (155)
Q Consensus 1 A~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~c~~~~~~~~~~C~ 51 (155)
|+++.||+.||+|+.|+++|.. ..|+.+++++||+.||.+++++ +|.
T Consensus 33 a~~~~~H~~CF~C~~C~~~L~~--~~~~~~~g~~yC~~~y~~~f~~--kc~ 79 (91)
T 2d8y_A 33 ANQQVFHISCFRCSYCNNKLSL--GTYASLHGRIYCKPHFNQLFKS--KGN 79 (91)
T ss_dssp CSSSEEETTTCBCTTTCCBCCT--TTCCCSSSCCCCHHHHHHHSCC--CSC
T ss_pred ECCCEECCCCCeeCCCCCCCCC--CCcEeECCEEECHHHHHHHhCC--CcC
Confidence 6899999999999999999964 4589999999999999999999 886
No 77
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.24 E-value=5.1e-12 Score=84.48 Aligned_cols=56 Identities=18% Similarity=0.350 Sum_probs=49.5
Q ss_pred CCCccccccCcccccCCcccccCCCeEEEeCCeeecccchhcccccccccccccccccc
Q psy12215 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59 (155)
Q Consensus 1 A~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~c~~~~~~~~~~C~~C~~~I~~ 59 (155)
|+++.||+.||+|+.|+++|.. +..|+..++++||+.||.+++++ +|..++..+.+
T Consensus 27 a~~~~~H~~CF~C~~C~~~L~~-g~~f~~~~g~~yC~~cy~~~~~~--~~~~~~~~~~~ 82 (123)
T 2l3k_A 27 VKDKVYHLECFKCAACQKHFSV-GDRYLLINSDIVCEQDIYEWTKI--NGGSGGSGGSG 82 (123)
T ss_dssp CSSCCCCTTTCBCTTTCCBCCT-TCEEEECSSSEEEGGGHHHHHHH--HTCCCCCCSCC
T ss_pred ECCcccccccCccccCCCCCCC-CCcEEeeCCEEEcHHHhHHHhcc--ccCCCCCCCcc
Confidence 6789999999999999999953 35799999999999999999998 89888777654
No 78
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.24 E-value=9.6e-13 Score=88.05 Aligned_cols=45 Identities=51% Similarity=1.312 Sum_probs=40.1
Q ss_pred CCCccccccCcccccCCcccccCCCeEEEeCCeeecccchhcccc
Q psy12215 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 45 (155)
Q Consensus 1 A~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~c~~~~~~ 45 (155)
|+|+.||+.||+|..|+++|.+.+..|+.++|++||+.||.++|+
T Consensus 79 a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~~Fg 123 (123)
T 2l4z_A 79 AMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 123 (123)
T ss_dssp ETTEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHHHHCC
T ss_pred eCCcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHhhhhcC
Confidence 678999999999999999996434579999999999999999875
No 79
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.22 E-value=2e-12 Score=78.21 Aligned_cols=43 Identities=26% Similarity=0.607 Sum_probs=38.4
Q ss_pred CCCccccccCcccccCCcccccCCCeEEEeCCeeecccchhcccc
Q psy12215 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 45 (155)
Q Consensus 1 A~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~c~~~~~~ 45 (155)
|+|+.||++||+|+.|+++|.. ..|+..+|++||+.||.++|+
T Consensus 30 ~~~~~~H~~CF~C~~C~~~L~~--~~~~~~~g~~yC~~~y~~lf~ 72 (72)
T 3f6q_B 30 SNGELYHEQCFVCAQCFQQFPE--GLFYEFEGRKYCEHDFQMLFA 72 (72)
T ss_dssp ETTEEEETTTSSCTTTCCCCGG--GCCEEETTEEECHHHHHHHTC
T ss_pred eCcCeeCcCCCcccCCCCCCCC--CCeEeECCeEeCHHHHHHhhC
Confidence 5789999999999999999964 368999999999999998774
No 80
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.21 E-value=5.3e-12 Score=78.25 Aligned_cols=48 Identities=15% Similarity=0.400 Sum_probs=41.1
Q ss_pred CCCccccccCcccccCCcccccCCCeEE-EeCCeeecccchhcccccccccc
Q psy12215 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLY-QKANLILCKRDYLRLFGTTGYCA 51 (155)
Q Consensus 1 A~~~~~H~~Cf~C~~C~~~l~~~~~~~~-~~~~~~~C~~c~~~~~~~~~~C~ 51 (155)
|+++.||++||+|+.|+++|.. +..|+ ..++++||+.||.+++++ .+.
T Consensus 32 a~~~~~H~~CF~C~~C~~~L~~-g~~f~~~~~~~~~C~~c~~~~~~~--~~s 80 (81)
T 1x6a_A 32 AGEFKYHPECFACMSCKVIIED-GDAYALVQHATLYCGKCHNEVVSG--PSS 80 (81)
T ss_dssp CTTCCBCTTSCBCTTTCCBCCT-TSCEEECSSSCEEEHHHHHHHHCT--TSC
T ss_pred ECCceeccccCCccCCCCccCC-CCcEEEeeCCEEECHHHHHHHhcC--CCC
Confidence 6899999999999999999963 34577 489999999999999987 553
No 81
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.20 E-value=5e-12 Score=78.67 Aligned_cols=44 Identities=16% Similarity=0.388 Sum_probs=38.2
Q ss_pred CCCccccccCcccccCCcccccCCCeEE--EeCCeeecccchhccccc
Q psy12215 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLY--QKANLILCKRDYLRLFGT 46 (155)
Q Consensus 1 A~~~~~H~~Cf~C~~C~~~l~~~~~~~~--~~~~~~~C~~c~~~~~~~ 46 (155)
|+|+.||++||+|+.|+++|.. ..|+ .+++++||+.||.+++.+
T Consensus 33 a~~~~wH~~CF~C~~C~~~L~~--~~~~~~~~~g~~yC~~~y~~~~~~ 78 (82)
T 2co8_A 33 VNGHFFHRSCFRCHTCEATLWP--GGYEQHPGDGHFYCLQHLPQTDSG 78 (82)
T ss_dssp BTTBCCBTTTCBCSSSCCBCCT--TSEECCTTTCCCEETTTCCCCCCC
T ss_pred ECCCeeCCCcCEEcCCCCCcCC--CceeEeCcCCEEEChHHHHhhhcC
Confidence 5789999999999999999954 4566 479999999999998865
No 82
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.15 E-value=1e-11 Score=73.87 Aligned_cols=41 Identities=24% Similarity=0.758 Sum_probs=36.5
Q ss_pred CCCcccc--ccCcccccCCcccccCCCeEEEeCCeeec-ccchhcc
Q psy12215 1 ALDLFWH--EDCLKCGCCDCRLGEVGSTLYQKANLILC-KRDYLRL 43 (155)
Q Consensus 1 A~~~~~H--~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C-~~c~~~~ 43 (155)
|+|+.|| ++||+|+.|+++| .+..|+.++|++|| .+||.++
T Consensus 21 a~~~~wH~~~~CF~C~~C~~~L--~~~~f~~~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 21 YNNFSWHASTECFLCSCCSKCL--IGQKFMPVEGMVFCSVECKKRM 64 (65)
T ss_dssp ETTEEEETTTTTSBCTTTCCBC--TTSCCEEETTEEESSHHHHHTT
T ss_pred ECCCccCCCCCCEECCCCCCcC--CCCceEEECCEEecCHHHhhhh
Confidence 5789999 9999999999999 45679999999999 8888754
No 83
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=7.6e-12 Score=76.76 Aligned_cols=40 Identities=18% Similarity=0.472 Sum_probs=36.1
Q ss_pred CCCccccccCcccccCCcccccCCCeEEEeCCeeecccchhc
Q psy12215 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLR 42 (155)
Q Consensus 1 A~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~c~~~ 42 (155)
|+++.||+.||+|+.|+++|. +..|+.+++++||++||.+
T Consensus 37 a~~~~~H~~CF~C~~C~~~L~--~~~f~~~~~~~yC~~cy~~ 76 (77)
T 2egq_A 37 YEGQSWHDYCFHCKKCSVNLA--NKRFVFHQEQVYCPDCAKK 76 (77)
T ss_dssp ETTEEEETTTCBCSSSCCBCT--TSCCCEETTEECCHHHHHH
T ss_pred ECcceeCcccCEehhcCCCCC--CCccEeECCEEEChHHhcc
Confidence 578999999999999999995 4579999999999999965
No 84
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.88 E-value=7.8e-10 Score=68.32 Aligned_cols=45 Identities=20% Similarity=0.410 Sum_probs=34.9
Q ss_pred CCCccccccCcccccCCcccccCCCeEEEeCCeeecccchhccccc
Q psy12215 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGT 46 (155)
Q Consensus 1 A~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~c~~~~~~~ 46 (155)
|+++.||++||+|+.|+++|... ..|...++.+||+.||.+.++.
T Consensus 32 a~~~~wH~~CF~C~~C~~~L~~~-~~~~~~~~~~~C~~C~~~~~~~ 76 (81)
T 1v6g_A 32 ALGKTYHPDCFVCAVCRLPFPPG-DRVTFNGKECMCQKCSLPVSVS 76 (81)
T ss_dssp ETTEEECTTTSSCSSSCCCCCSS-SCEEEETTEEEEHHHHSCCSSC
T ss_pred ECCceeCccCCccccCCCCCCCC-CEEEeCCCCEEChhhhcccCCC
Confidence 57899999999999999999642 2344455557999999876653
No 85
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=97.88 E-value=4.2e-06 Score=41.93 Aligned_cols=27 Identities=33% Similarity=0.748 Sum_probs=24.0
Q ss_pred cccccccccccCceEEeccCcccccccc
Q psy12215 49 YCAACTKVIPAFEMVMRAKNNVYHLECF 76 (155)
Q Consensus 49 ~C~~C~~~I~~~~~~~~~~~~~~H~~Cf 76 (155)
+|..|++.+++.|.+ .+.|+.||..||
T Consensus 5 ~C~~C~k~Vy~~Ek~-~~~g~~~Hk~CF 31 (31)
T 1zfo_A 5 NCARCGKIVYPTEKV-NCLDKFWHKACF 31 (31)
T ss_dssp BCSSSCSBCCGGGCC-CSSSSCCCGGGC
T ss_pred cCCccCCEEecceeE-EECCeEecccCC
Confidence 899999999987655 688999999997
No 86
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=94.10 E-value=0.048 Score=35.46 Aligned_cols=110 Identities=14% Similarity=0.244 Sum_probs=70.9
Q ss_pred cCcccccCCcccccC----CCeEEEeCCeeecccchhccccccccccccccccccCceEEeccCccccccccccccCCcc
Q psy12215 9 DCLKCGCCDCRLGEV----GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHR 84 (155)
Q Consensus 9 ~Cf~C~~C~~~l~~~----~~~~~~~~~~~~C~~c~~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~ 84 (155)
+=+.|..|-..+.+. .......=|..||.+|..+.......|..|.+.+...+.... ..-..-..|..|...
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l----~i~~~~~~C~iC~~~ 81 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI----YIGSGTVSCPICMDG 81 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEEC----BCSSSSCBCTTTCCB
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccccccc----ccCCCCCCCCCCCCc
Confidence 347888887777431 112456668899999998876544589999999976332211 123445678888887
Q ss_pred ccc----CCe-EEeeCCeeecHHhHHhhhcccCCCeeeecCCeec
Q psy12215 85 FCV----GDR-FYLCDNKILCEYDYEERQVFCVGDRFYLCDNKIL 124 (155)
Q Consensus 85 l~~----~~~-~~~~~~~~~C~~c~~~~~~~~~~~~c~~c~~~i~ 124 (155)
+.. ... ....=|..||..|..+.. .....|..|...+.
T Consensus 82 ~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~--~~~~~CP~Cr~~~~ 124 (133)
T 4ap4_A 82 YSEIVQNGRLIVSTECGHVFCSQCLRDSL--KNANTCPTCRKKIN 124 (133)
T ss_dssp HHHHHHTTCCEEEETTSBEEEHHHHHHHH--HHCSBCTTTCCBCC
T ss_pred cccccccCcceEeCCCCChhhHHHHHHHH--HcCCCCCCCCCcCC
Confidence 732 112 333448999999987654 12457777777665
No 87
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=86.10 E-value=0.84 Score=26.61 Aligned_cols=49 Identities=4% Similarity=0.142 Sum_probs=36.4
Q ss_pred ccCcccccCCcccccCCCeEEEeCCeeecccchhccccc-ccccccccccccc
Q psy12215 8 EDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGT-TGYCAACTKVIPA 59 (155)
Q Consensus 8 ~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~c~~~~~~~-~~~C~~C~~~I~~ 59 (155)
+.-|.|..|...+.+ .....-|..||..|..+.+.. ...|..|...+..
T Consensus 6 ~~~~~C~IC~~~~~~---Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 6 PEYFRCPISLELMKD---PVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSSCTTTSCCCSS---EEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred cccCCCCCccccccC---CEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 345889999888742 456688999999998776532 3379999888864
No 88
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=84.13 E-value=0.83 Score=26.64 Aligned_cols=50 Identities=16% Similarity=0.281 Sum_probs=29.2
Q ss_pred CcccccCCcccccCCCeEEEeCCeeecccchhcccccccccccccccccc
Q psy12215 10 CLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59 (155)
Q Consensus 10 Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~c~~~~~~~~~~C~~C~~~I~~ 59 (155)
-+.|..|-..+..........=+..||..|..+.+.....|..|...|..
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 15 GLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTG 64 (78)
T ss_dssp SCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred CCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCC
Confidence 35677776666433222333456677777776654333367777777754
No 89
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=82.42 E-value=1.1 Score=24.08 Aligned_cols=47 Identities=13% Similarity=0.302 Sum_probs=25.1
Q ss_pred cccccCCcccccCCCeEEEe-CCeeecccchhcccccccccccccccc
Q psy12215 11 LKCGCCDCRLGEVGSTLYQK-ANLILCKRDYLRLFGTTGYCAACTKVI 57 (155)
Q Consensus 11 f~C~~C~~~l~~~~~~~~~~-~~~~~C~~c~~~~~~~~~~C~~C~~~I 57 (155)
..|..|-..+.+........ =+..||.+|..+.......|..|...|
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~ 53 (55)
T 1iym_A 6 VECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53 (55)
T ss_dssp CCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCS
T ss_pred CcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEe
Confidence 45667766664332222222 456677777665443333566666554
No 90
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=79.35 E-value=1.1 Score=23.95 Aligned_cols=48 Identities=13% Similarity=0.201 Sum_probs=25.1
Q ss_pred cccccCCcccccCCC-eEEEeCCeeecccchhccccccccccccccccc
Q psy12215 11 LKCGCCDCRLGEVGS-TLYQKANLILCKRDYLRLFGTTGYCAACTKVIP 58 (155)
Q Consensus 11 f~C~~C~~~l~~~~~-~~~~~~~~~~C~~c~~~~~~~~~~C~~C~~~I~ 58 (155)
..|..|...+.+.+. .....=+..||.+|..+.+.....|..|...|.
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 6 SGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 456666666632211 233344566777776654432225666666553
No 91
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=79.04 E-value=2.5 Score=26.26 Aligned_cols=49 Identities=10% Similarity=0.021 Sum_probs=36.4
Q ss_pred ccCcccccCCcccccCCCeEEEeCCeeecccchhcccccccccccccccccc
Q psy12215 8 EDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59 (155)
Q Consensus 8 ~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~c~~~~~~~~~~C~~C~~~I~~ 59 (155)
+.-|.|..|...+. .......|..||..|..+.+.....|..|+.++..
T Consensus 27 p~~~~CpI~~~~m~---dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLMT---DPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBCS---SEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred cHhhCCcCccCccc---CCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 56789999988774 25677799999998876655333478888888764
No 92
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.66 E-value=0.78 Score=26.41 Aligned_cols=48 Identities=21% Similarity=0.399 Sum_probs=30.7
Q ss_pred cCcccccCCcccccCCCeEEE-eCCeeecccchhcccccccccccccccccc
Q psy12215 9 DCLKCGCCDCRLGEVGSTLYQ-KANLILCKRDYLRLFGTTGYCAACTKVIPA 59 (155)
Q Consensus 9 ~Cf~C~~C~~~l~~~~~~~~~-~~~~~~C~~c~~~~~~~~~~C~~C~~~I~~ 59 (155)
.-+.|..|...+.+ .... .=|..||..|..+.+.....|..|...|..
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 14 PYILCSICKGYLID---ATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQ 62 (72)
T ss_dssp GGGSCTTTSSCCSS---CEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCS
T ss_pred CCCCCCCCChHHHC---cCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCc
Confidence 34677788776632 2333 566788888876654332368888887764
No 93
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.73 E-value=1.8 Score=24.77 Aligned_cols=49 Identities=8% Similarity=0.177 Sum_probs=28.3
Q ss_pred cccccCCcccccCCCeEEEeCCeeecccchhcccccccccccccccccc
Q psy12215 11 LKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59 (155)
Q Consensus 11 f~C~~C~~~l~~~~~~~~~~~~~~~C~~c~~~~~~~~~~C~~C~~~I~~ 59 (155)
..|..|-..+..........=+..||..|..+.+.....|..|...|..
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 16 ELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred CCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 4566776666433222233456677777776644333367777777754
No 94
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=77.66 E-value=5.4 Score=23.95 Aligned_cols=60 Identities=18% Similarity=0.397 Sum_probs=38.5
Q ss_pred cccccCCcccccCCCeEEEeCCeeecccchhccccccccccccccccccCceEEeccCccccccccccccCCcccc
Q psy12215 11 LKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFC 86 (155)
Q Consensus 11 f~C~~C~~~l~~~~~~~~~~~~~~~C~~c~~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~ 86 (155)
..|-.|..+|... ++..+|..|.......+ .|+.|++++. ++.+=|.. =+.|..|+..++
T Consensus 3 ~~CP~C~~~l~~~-------~~~~~C~~C~~~~~~~a-fCPeCgq~Le----~lkACGA~----~yFC~~C~~LiS 62 (81)
T 2jrp_A 3 ITCPVCHHALERN-------GDTAHCETCAKDFSLQA-LCPDCRQPLQ----VLKACGAV----DYFCQNGHGLIS 62 (81)
T ss_dssp CCCSSSCSCCEEC-------SSEEECTTTCCEEEEEE-ECSSSCSCCC----EEEETTEE----EECCTTTTCCCC
T ss_pred CCCCCCCCccccC-------CCceECccccccCCCcc-cCcchhhHHH----HHHhcCCc----CeeeccCCCEee
Confidence 4678888888532 33455888876543322 7999999983 23444433 367888888774
No 95
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=77.36 E-value=5.1 Score=24.91 Aligned_cols=59 Identities=20% Similarity=0.400 Sum_probs=37.7
Q ss_pred cccccCCcccccCCCeEEEeCCeeecccchhccccccccccccccccccCceEEeccCccccccccccccCCccc
Q psy12215 11 LKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRF 85 (155)
Q Consensus 11 f~C~~C~~~l~~~~~~~~~~~~~~~C~~c~~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l 85 (155)
..|..|..+|.. .++..+|..|..... ....|+.|++++ .++.+-|..= |.|..|+..+
T Consensus 33 ~~CP~Cq~eL~~-------~g~~~hC~~C~~~f~-~~a~CPdC~q~L----evLkACGAvd----YFC~~chgLi 91 (101)
T 2jne_A 33 LHCPQCQHVLDQ-------DNGHARCRSCGEFIE-MKALCPDCHQPL----QVLKACGAVD----YFCQHGHGLI 91 (101)
T ss_dssp CBCSSSCSBEEE-------ETTEEEETTTCCEEE-EEEECTTTCSBC----EEEEETTEEE----EEETTTTEEE
T ss_pred ccCccCCCccee-------cCCEEECccccchhh-ccccCcchhhHH----HHHHHhcCcc----hhhccCCcee
Confidence 678899888843 345556877765422 222799999999 2445544221 5677777766
No 96
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=75.96 E-value=1.6 Score=24.66 Aligned_cols=48 Identities=19% Similarity=0.157 Sum_probs=23.4
Q ss_pred cccccCCcccccCCCeEEEeCCeeecccchhccccccccccccccccc
Q psy12215 11 LKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIP 58 (155)
Q Consensus 11 f~C~~C~~~l~~~~~~~~~~~~~~~C~~c~~~~~~~~~~C~~C~~~I~ 58 (155)
..|..|-..+..........=+..||..|..+.+.....|..|...|.
T Consensus 15 ~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 62 (69)
T 2kiz_A 15 EKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIE 62 (69)
T ss_dssp CSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSC
T ss_pred CCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCcccc
Confidence 455666555532222223334556666666554322225666666553
No 97
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=75.67 E-value=1.6 Score=26.13 Aligned_cols=49 Identities=8% Similarity=0.040 Sum_probs=36.4
Q ss_pred ccCcccccCCcccccCCCeEEEeCCeeecccchhcccccccccccccccccc
Q psy12215 8 EDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59 (155)
Q Consensus 8 ~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~c~~~~~~~~~~C~~C~~~I~~ 59 (155)
+.-|.|..|...+.+ ......|..||..|..+.+.....|..|+.++..
T Consensus 12 p~~~~CpI~~~~m~d---PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTD---PVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp CTTTBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred chheECcccCchhcC---CeECCCCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 457899999888742 5667789999998876655333378888888764
No 98
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.18 E-value=1.6 Score=24.71 Aligned_cols=46 Identities=13% Similarity=0.234 Sum_probs=30.7
Q ss_pred CcccccCCcccccCCCeEEEeCCeeecccchhcccccccccccccccccc
Q psy12215 10 CLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59 (155)
Q Consensus 10 Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~c~~~~~~~~~~C~~C~~~I~~ 59 (155)
-+.|..|-..+. . ....=|..||..|..+.+.....|..|...|..
T Consensus 15 ~~~C~IC~~~~~--~--~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 15 EEECCICMDGRA--D--LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTG 60 (70)
T ss_dssp CCCCSSSCCSCC--S--EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTC
T ss_pred CCCCeeCCcCcc--C--cccCCCCcccHHHHHHHHHCcCcCCCcCCcccC
Confidence 456777766663 2 445567788888887654433478888888765
No 99
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=74.99 E-value=1.8 Score=23.81 Aligned_cols=49 Identities=16% Similarity=0.388 Sum_probs=31.8
Q ss_pred cccccCCcccccC----CCeEEEeCCeeecccchhcccccccccccccccccc
Q psy12215 11 LKCGCCDCRLGEV----GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59 (155)
Q Consensus 11 f~C~~C~~~l~~~----~~~~~~~~~~~~C~~c~~~~~~~~~~C~~C~~~I~~ 59 (155)
+.|..|...+.+. .......=|..||.+|..+.......|..|...+..
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 56 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCc
Confidence 5677777766421 112445667788988887655333478888888865
No 100
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=74.08 E-value=2.1 Score=27.99 Aligned_cols=45 Identities=20% Similarity=0.295 Sum_probs=27.0
Q ss_pred cccccCCcccccCCCeEEEeCCeeecccchhccccccccccccccccc
Q psy12215 11 LKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIP 58 (155)
Q Consensus 11 f~C~~C~~~l~~~~~~~~~~~~~~~C~~c~~~~~~~~~~C~~C~~~I~ 58 (155)
++|..|...+.. .....=|..||..|..+.+.....|+.|..+|.
T Consensus 54 ~~C~iC~~~~~~---~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 54 LQCIICSEYFIE---AVTLNCAHSFCSYCINEWMKRKIECPICRKDIK 98 (138)
T ss_dssp SBCTTTCSBCSS---EEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCC
T ss_pred CCCcccCcccCC---ceECCCCCCccHHHHHHHHHcCCcCCCCCCcCC
Confidence 567777776632 344556677777776654333235666666664
No 101
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.54 E-value=1.8 Score=25.40 Aligned_cols=46 Identities=20% Similarity=0.392 Sum_probs=27.6
Q ss_pred CcccccCCcccccCCCeEEEeCCeeecccchhccccccccccccccccc
Q psy12215 10 CLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIP 58 (155)
Q Consensus 10 Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~c~~~~~~~~~~C~~C~~~I~ 58 (155)
=+.|..|...+.+ .....=|..||..|..+.+.....|..|...+.
T Consensus 15 ~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 15 PFRCFICRQAFQN---PVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CSBCSSSCSBCCS---EEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCcCCCchhcC---eeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 3567777666632 344555667777777665433235777777664
No 102
>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding PR; NMR {Synechococcus elongatus} SCOP: g.46.1.1
Probab=72.24 E-value=1.5 Score=24.39 Aligned_cols=30 Identities=20% Similarity=0.391 Sum_probs=21.4
Q ss_pred ccccCCcccccCCCeEEEeCCeeec-ccchhcc
Q psy12215 12 KCGCCDCRLGEVGSTLYQKANLILC-KRDYLRL 43 (155)
Q Consensus 12 ~C~~C~~~l~~~~~~~~~~~~~~~C-~~c~~~~ 43 (155)
.|..|+..+.. ..-+.++|+.|| ++|....
T Consensus 9 aC~~C~c~Vs~--~eai~~dGK~YCSe~Ca~gH 39 (55)
T 1jjd_A 9 ACEPCLCNVDP--SKAIDRNGLYYCSEACADGH 39 (55)
T ss_dssp SSTTCCCCBCT--TTSEESSSCEESSHHHHHTS
T ss_pred cCCCCeeEech--HHhhhcCCeEEehHHHHccC
Confidence 36678887743 346899999998 6666554
No 103
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.18 E-value=7.5 Score=21.92 Aligned_cols=45 Identities=20% Similarity=0.340 Sum_probs=31.3
Q ss_pred cccccCCcccccCCeEEeeCCeeecHHhHHhhhcccCCCeeeecCCeec
Q psy12215 76 FACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFCVGDRFYLCDNKIL 124 (155)
Q Consensus 76 f~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~~~~~c~~c~~~i~ 124 (155)
+.|.+|...+ .......=|..||..|..+.. .....|..|...|.
T Consensus 16 ~~C~IC~~~~--~~~~~~~CgH~fC~~Ci~~~~--~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 16 PECAICLQTC--VHPVSLPCKHVFCYLCVKGAS--WLGKRCALCRQEIP 60 (71)
T ss_dssp CBCSSSSSBC--SSEEEETTTEEEEHHHHHHCT--TCSSBCSSSCCBCC
T ss_pred CCCccCCccc--CCCEEccCCCHHHHHHHHHHH--HCCCcCcCcCchhC
Confidence 5677887776 334444458899999988754 23467888887766
No 104
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=72.11 E-value=5.5 Score=22.89 Aligned_cols=48 Identities=10% Similarity=0.086 Sum_probs=33.9
Q ss_pred cccccccCCcccccCCeEEeeCCeeecHHhHHhhhcccCCCeeeecCCeec
Q psy12215 74 ECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFCVGDRFYLCDNKIL 124 (155)
Q Consensus 74 ~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~~~~~c~~c~~~i~ 124 (155)
+-|.|..|...+ .......-|..||..|..+... .....|..|..++.
T Consensus 7 ~~~~C~IC~~~~--~~Pv~~~CgH~fc~~Ci~~~~~-~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 7 EYFRCPISLELM--KDPVIVSTGQTYERSSIQKWLD-AGHKTCPKSQETLL 54 (78)
T ss_dssp SSSSCTTTSCCC--SSEEEETTTEEEEHHHHHHHHT-TTCCBCTTTCCBCS
T ss_pred ccCCCCCccccc--cCCEEcCCCCeecHHHHHHHHH-HCcCCCCCCcCCCC
Confidence 347788888877 4556666799999999887662 12456777777654
No 105
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=71.03 E-value=2.4 Score=24.36 Aligned_cols=8 Identities=25% Similarity=0.721 Sum_probs=4.3
Q ss_pred cccCCccc
Q psy12215 78 CQQCNHRF 85 (155)
Q Consensus 78 C~~C~~~l 85 (155)
|-.|...+
T Consensus 63 CP~Cr~~~ 70 (75)
T 1x4j_A 63 CPICRADS 70 (75)
T ss_dssp CTTTCCCC
T ss_pred CcCcCCcC
Confidence 55555554
No 106
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=70.53 E-value=4.1 Score=25.12 Aligned_cols=49 Identities=4% Similarity=-0.105 Sum_probs=35.9
Q ss_pred ccCcccccCCcccccCCCeEEEeCC-eeecccchhcccccccccccccccccc
Q psy12215 8 EDCLKCGCCDCRLGEVGSTLYQKAN-LILCKRDYLRLFGTTGYCAACTKVIPA 59 (155)
Q Consensus 8 ~~Cf~C~~C~~~l~~~~~~~~~~~~-~~~C~~c~~~~~~~~~~C~~C~~~I~~ 59 (155)
+.-|.|..|...+. .......| ..||..|..+.+.....|..|+.++..
T Consensus 20 p~~~~CpI~~~~m~---dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 20 CDEFLDPIMSTLMC---DPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp CTTTBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred cHhcCCcCcccccc---CCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 46789999988774 25667788 899998876655333378888888764
No 107
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=69.93 E-value=2.8 Score=26.26 Aligned_cols=48 Identities=15% Similarity=0.333 Sum_probs=29.9
Q ss_pred cccCCcccccCCCeEEEeCCeeecccchhccc-cccccccccccccccCce
Q psy12215 13 CGCCDCRLGEVGSTLYQKANLILCKRDYLRLF-GTTGYCAACTKVIPAFEM 62 (155)
Q Consensus 13 C~~C~~~l~~~~~~~~~~~~~~~C~~c~~~~~-~~~~~C~~C~~~I~~~~~ 62 (155)
|..|+.|+..-+ =...=+-+||-+|+.... ...+.|..|..+|...|.
T Consensus 4 C~~C~~Pi~iyg--RmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~ 52 (101)
T 3vk6_A 4 CDKCGLPIKVYG--RMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQ 52 (101)
T ss_dssp CTTTCSBCSEEE--EEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEE
T ss_pred cCccCCCeEEEe--eeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeEE
Confidence 778888884211 012334589999996532 111279999999975443
No 108
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=69.82 E-value=3.2 Score=25.00 Aligned_cols=8 Identities=38% Similarity=1.066 Sum_probs=3.6
Q ss_pred cccCCccc
Q psy12215 78 CQQCNHRF 85 (155)
Q Consensus 78 C~~C~~~l 85 (155)
|-.|...+
T Consensus 80 CP~Cr~~~ 87 (91)
T 2l0b_A 80 CPVCRCMF 87 (91)
T ss_dssp CTTTCCBS
T ss_pred CcCcCccC
Confidence 44444444
No 109
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=69.78 E-value=1.6 Score=26.76 Aligned_cols=45 Identities=16% Similarity=0.411 Sum_probs=25.8
Q ss_pred cccccCCcccccCCCeEEE-eCCeeecccchhccccccccccccccccc
Q psy12215 11 LKCGCCDCRLGEVGSTLYQ-KANLILCKRDYLRLFGTTGYCAACTKVIP 58 (155)
Q Consensus 11 f~C~~C~~~l~~~~~~~~~-~~~~~~C~~c~~~~~~~~~~C~~C~~~I~ 58 (155)
+.|..|...+.+ .... .=|..||..|..+.+.....|..|...+.
T Consensus 23 ~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 68 (99)
T 2y43_A 23 LRCGICFEYFNI---AMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVT 68 (99)
T ss_dssp TBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCcccCChhhCC---cCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCC
Confidence 567777666632 2333 45667777776654433235666666664
No 110
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.46 E-value=1.4 Score=24.69 Aligned_cols=48 Identities=23% Similarity=0.409 Sum_probs=30.4
Q ss_pred cCcccccCCcccccCCCeEEEeCCeeecccchhccc-ccccccccccccccc
Q psy12215 9 DCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLF-GTTGYCAACTKVIPA 59 (155)
Q Consensus 9 ~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~c~~~~~-~~~~~C~~C~~~I~~ 59 (155)
.=+.|..|...+.+. ....=|..||..|..+.+ .....|..|...|..
T Consensus 14 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 14 DKYKCEKCHLVLCSP---KQTECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCEECTTTCCEESSC---CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred cCCCCCCCChHhcCe---eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 346788887776432 234667788888887655 222268888777754
No 111
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.00 E-value=3 Score=24.59 Aligned_cols=51 Identities=18% Similarity=0.413 Sum_probs=32.9
Q ss_pred cCcccccCCcccccCCC-eEEEeCCeeecccchhcccccc---cccccccccccc
Q psy12215 9 DCLKCGCCDCRLGEVGS-TLYQKANLILCKRDYLRLFGTT---GYCAACTKVIPA 59 (155)
Q Consensus 9 ~Cf~C~~C~~~l~~~~~-~~~~~~~~~~C~~c~~~~~~~~---~~C~~C~~~I~~ 59 (155)
.=+.|..|...+..... .....=|..||..|..+..... ..|..|...+..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred CCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 34678888877753221 3444567788999987654321 268888887754
No 112
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=67.98 E-value=2.8 Score=23.47 Aligned_cols=46 Identities=13% Similarity=0.228 Sum_probs=28.1
Q ss_pred cccccCCcccccCCCeEEEeCCeeecccchhccccccccccccccccc
Q psy12215 11 LKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIP 58 (155)
Q Consensus 11 f~C~~C~~~l~~~~~~~~~~~~~~~C~~c~~~~~~~~~~C~~C~~~I~ 58 (155)
..|..|...+.+ ......=|..||.+|..+.+.....|..|...+.
T Consensus 6 ~~C~IC~~~~~~--~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 6 ERCPICLEDPSN--YSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCSSCCSCCCS--CEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCeeCCccccC--CcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 356677666632 2234455677888887664433336888887775
No 113
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=67.96 E-value=1.8 Score=24.49 Aligned_cols=50 Identities=16% Similarity=0.377 Sum_probs=30.1
Q ss_pred CcccccCCcccccC----CCeEEEeCCeeecccchhcccccccccccccccccc
Q psy12215 10 CLKCGCCDCRLGEV----GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59 (155)
Q Consensus 10 Cf~C~~C~~~l~~~----~~~~~~~~~~~~C~~c~~~~~~~~~~C~~C~~~I~~ 59 (155)
=+.|..|...+.+. .......=|..||.+|..+.......|..|...+..
T Consensus 10 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 10 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp CCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccCh
Confidence 35677777666421 111344556778888886654333368888777754
No 114
>2eqg_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=67.93 E-value=1.7 Score=22.79 Aligned_cols=18 Identities=33% Similarity=0.479 Sum_probs=14.8
Q ss_pred EEeeCCeeecHHhHHhhh
Q psy12215 91 FYLCDNKILCEYDYEERQ 108 (155)
Q Consensus 91 ~~~~~~~~~C~~c~~~~~ 108 (155)
|...+-+++|..||+++.
T Consensus 22 ~mSVnTQP~CHEC~errq 39 (49)
T 2eqg_A 22 FMSVNTQPLCHECSERRQ 39 (49)
T ss_dssp BCCTTTTTSCHHHHHHHH
T ss_pred EEEecCccchHHHHHHHh
Confidence 445678999999999876
No 115
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=67.82 E-value=2.3 Score=30.10 Aligned_cols=30 Identities=23% Similarity=0.422 Sum_probs=24.2
Q ss_pred cccccCCcccccCCeEEeeCCeeecHHhHHh
Q psy12215 76 FACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106 (155)
Q Consensus 76 f~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~ 106 (155)
..|..|+... ...+-...+|+++|..|+.+
T Consensus 173 ~~C~~CGE~~-~~~~~~~~~g~~~C~~C~~~ 202 (204)
T 2gvi_A 173 VRCDVCGEYT-YEADAKLLNGKPVCKPDYYG 202 (204)
T ss_dssp EECTTTCCEE-EGGGCEEETTEEECHHHHHC
T ss_pred eECCCCCCch-hhcceeeeCCcEEChhhhcc
Confidence 4699999988 55556677999999999865
No 116
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=67.42 E-value=2.5 Score=26.30 Aligned_cols=46 Identities=22% Similarity=0.427 Sum_probs=25.8
Q ss_pred CcccccCCcccccCCCeEEE-eCCeeecccchhccccccccccccccccc
Q psy12215 10 CLKCGCCDCRLGEVGSTLYQ-KANLILCKRDYLRLFGTTGYCAACTKVIP 58 (155)
Q Consensus 10 Cf~C~~C~~~l~~~~~~~~~-~~~~~~C~~c~~~~~~~~~~C~~C~~~I~ 58 (155)
-+.|..|...+.+ .... .=|..||..|....+.....|..|...+.
T Consensus 15 ~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 61 (108)
T 2ckl_A 15 HLMCVLCGGYFID---ATTIIECLHSFCKTCIVRYLETSKYCPICDVQVH 61 (108)
T ss_dssp GTBCTTTSSBCSS---EEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSC
T ss_pred cCCCccCChHHhC---cCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccc
Confidence 3567777666632 3343 56667777776554432225666666554
No 117
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=66.78 E-value=5.7 Score=25.87 Aligned_cols=46 Identities=20% Similarity=0.323 Sum_probs=32.7
Q ss_pred cccccCCcccccCCeEEeeCCeeecHHhHHhhhcccCCCeeeecCCeecc
Q psy12215 76 FACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFCVGDRFYLCDNKILC 125 (155)
Q Consensus 76 f~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~~~~~c~~c~~~i~c 125 (155)
+.|..|...+ .......=|..||..|..+.. .....|..|..+|..
T Consensus 54 ~~C~iC~~~~--~~~~~~~CgH~fc~~Ci~~~~--~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 54 LQCIICSEYF--IEAVTLNCAHSFCSYCINEWM--KRKIECPICRKDIKS 99 (138)
T ss_dssp SBCTTTCSBC--SSEEEETTSCEEEHHHHHHHT--TTCSBCTTTCCBCCC
T ss_pred CCCcccCccc--CCceECCCCCCccHHHHHHHH--HcCCcCCCCCCcCCC
Confidence 5688887777 344555558899999987654 335679999887753
No 118
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=65.53 E-value=5.3 Score=22.28 Aligned_cols=48 Identities=13% Similarity=0.066 Sum_probs=35.9
Q ss_pred CcccccCCcccccCCCeEEE-eCCeeecccchhccccccccccccccccccC
Q psy12215 10 CLKCGCCDCRLGEVGSTLYQ-KANLILCKRDYLRLFGTTGYCAACTKVIPAF 60 (155)
Q Consensus 10 Cf~C~~C~~~l~~~~~~~~~-~~~~~~C~~c~~~~~~~~~~C~~C~~~I~~~ 60 (155)
-|.|..+...+. ..... .+|..|+.++..+.+...++|...++++...
T Consensus 3 ~~~CpIs~~~m~---dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~ 51 (61)
T 2bay_A 3 HMLCAISGKVPR---RPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIE 51 (61)
T ss_dssp -CCCTTTCSCCS---SEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred eEEecCCCCCCC---CCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChh
Confidence 377888888874 25666 8999999999887664444798888888653
No 119
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=65.42 E-value=3.4 Score=26.17 Aligned_cols=47 Identities=17% Similarity=0.364 Sum_probs=32.0
Q ss_pred CcccccCCcccccCCCeEEEeCCeeecccchhccccccc-ccccccccccc
Q psy12215 10 CLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTG-YCAACTKVIPA 59 (155)
Q Consensus 10 Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~c~~~~~~~~~-~C~~C~~~I~~ 59 (155)
=|.|..|...+.+ .....=|..||..|..+.+...+ .|..|...+..
T Consensus 18 ~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 18 KYECPICLMALRE---AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp GGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCcCChhhcC---eEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 3678888877742 34456678889888876543222 68888888765
No 120
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=64.87 E-value=3.3 Score=27.99 Aligned_cols=49 Identities=16% Similarity=0.332 Sum_probs=36.4
Q ss_pred cCcccccCCcccccCCCeEEEeCCeeecccchhccccccc-cccccccccccC
Q psy12215 9 DCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTG-YCAACTKVIPAF 60 (155)
Q Consensus 9 ~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~c~~~~~~~~~-~C~~C~~~I~~~ 60 (155)
.=|.|..|...+.+ .....-|..||..|..+.+..+. .|..|...|...
T Consensus 17 ~~~~C~IC~~~~~~---pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 17 SKYECPICLMALRE---AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp GGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCChhhcC---cEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 34789999888843 45567889999999988653222 799999988653
No 121
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.64 E-value=8.3 Score=21.67 Aligned_cols=48 Identities=13% Similarity=0.135 Sum_probs=31.4
Q ss_pred ccccccCCcccccCCeEEeeCCeeecHHhHHhhhcc-cCCCeeeecCCeec
Q psy12215 75 CFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVF-CVGDRFYLCDNKIL 124 (155)
Q Consensus 75 Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~-~~~~~c~~c~~~i~ 124 (155)
-+.|..|...+ .......=|..||..|..+.... .....|..|...+.
T Consensus 20 ~~~C~IC~~~~--~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 20 EVICPICLDIL--QKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVR 68 (73)
T ss_dssp CCBCTTTCSBC--SSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred CCEeccCCccc--CCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence 36778887777 34444545889999998876521 12346777777654
No 122
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=62.98 E-value=4.6 Score=29.19 Aligned_cols=49 Identities=8% Similarity=0.053 Sum_probs=36.3
Q ss_pred ccCcccccCCcccccCCCeEEEeCCeeecccchhccccccc-ccccccccccc
Q psy12215 8 EDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTG-YCAACTKVIPA 59 (155)
Q Consensus 8 ~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~c~~~~~~~~~-~C~~C~~~I~~ 59 (155)
+.-|.|..|...+. .+.....|..||..|..+.+...+ .|+.|+.++..
T Consensus 206 ~~~~~c~i~~~~~~---dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 206 PDYLCGKISFELMR---EPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CSTTBCTTTCSBCS---SEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CcccCCcCcCCHhc---CCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 46789999988874 256777899999999876543211 49999888864
No 123
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=61.09 E-value=4.7 Score=23.39 Aligned_cols=47 Identities=11% Similarity=0.066 Sum_probs=30.1
Q ss_pred cccccCCcccccCCeEEeeCCeeecHHhHHhhhccc----CCCeeeecCCeec
Q psy12215 76 FACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFC----VGDRFYLCDNKIL 124 (155)
Q Consensus 76 f~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~----~~~~c~~c~~~i~ 124 (155)
+.|..|...+ .......=|..||..|..+..... ....|..|...+.
T Consensus 20 ~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 20 VTCPICLELL--KEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP 70 (85)
T ss_dssp TSCTTTCSCC--SSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred CCCcCCChhh--CcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence 6778887777 333444458889999987655322 2456777776654
No 124
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.80 E-value=15 Score=20.74 Aligned_cols=37 Identities=24% Similarity=0.523 Sum_probs=25.6
Q ss_pred CccccccccccccCCcc-cccCCeEEeeC--CeeecHHhHHhh
Q psy12215 68 NNVYHLECFACQQCNHR-FCVGDRFYLCD--NKILCEYDYEER 107 (155)
Q Consensus 68 ~~~~H~~Cf~C~~C~~~-l~~~~~~~~~~--~~~~C~~c~~~~ 107 (155)
...+|+ ..|..|+.. + .+.+|.-.. +--+|..||.+.
T Consensus 6 ~~v~H~--~~Cd~C~~~pi-~G~RykC~~C~d~DLC~~C~~~g 45 (63)
T 2e5r_A 6 SGVFHP--VECSYCHSESM-MGFRYRCQQCHNYQLCQDCFWRG 45 (63)
T ss_dssp SSCCSC--SCCSSSCCCSS-CSCEEEESSCSSCEECHHHHHHC
T ss_pred CCceeC--CCCcCCCCcce-ecceEEecCCCCchhHHHHHhCC
Confidence 455676 788888865 6 666665432 567899999864
No 125
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=60.60 E-value=4.6 Score=25.47 Aligned_cols=45 Identities=24% Similarity=0.416 Sum_probs=30.5
Q ss_pred CcccccCCcccccCCCeEEE-eCCeeecccchhcccccccccccccccccc
Q psy12215 10 CLKCGCCDCRLGEVGSTLYQ-KANLILCKRDYLRLFGTTGYCAACTKVIPA 59 (155)
Q Consensus 10 Cf~C~~C~~~l~~~~~~~~~-~~~~~~C~~c~~~~~~~~~~C~~C~~~I~~ 59 (155)
=+.|..|...+.+ .... .=|..||..|....... .|..|...+..
T Consensus 22 ~~~C~IC~~~~~~---pv~~~~CgH~fC~~Ci~~~~~~--~CP~Cr~~~~~ 67 (117)
T 1jm7_B 22 LLRCSRCTNILRE---PVCLGGCEHIFCSNCVSDCIGT--GCPVCYTPAWI 67 (117)
T ss_dssp TTSCSSSCSCCSS---CBCCCSSSCCBCTTTGGGGTTT--BCSSSCCBCSC
T ss_pred CCCCCCCChHhhC---ccEeCCCCCHHHHHHHHHHhcC--CCcCCCCcCcc
Confidence 4678888776632 2333 56778888888776654 68888877743
No 126
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=59.22 E-value=5.5 Score=23.72 Aligned_cols=47 Identities=11% Similarity=0.145 Sum_probs=32.6
Q ss_pred ccccccCCcccccCCeEEeeC-CeeecHHhHHhhhcccCCCeeeecCCee
Q psy12215 75 CFACQQCNHRFCVGDRFYLCD-NKILCEYDYEERQVFCVGDRFYLCDNKI 123 (155)
Q Consensus 75 Cf~C~~C~~~l~~~~~~~~~~-~~~~C~~c~~~~~~~~~~~~c~~c~~~i 123 (155)
-+.|..|...+ ........ |..||..|..+.........|..|...+
T Consensus 13 ~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 13 ELLCLICKDIM--TDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp TTEETTTTEEC--SSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred CCCCCCCChhh--cCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 36788888877 34555663 8999999987664322235788887765
No 127
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=59.02 E-value=6.4 Score=22.52 Aligned_cols=46 Identities=11% Similarity=0.170 Sum_probs=29.2
Q ss_pred cccccCCcccccCCeEEee-CCeeecHHhHHhhhcccCCCeeeecCCee
Q psy12215 76 FACQQCNHRFCVGDRFYLC-DNKILCEYDYEERQVFCVGDRFYLCDNKI 123 (155)
Q Consensus 76 f~C~~C~~~l~~~~~~~~~-~~~~~C~~c~~~~~~~~~~~~c~~c~~~i 123 (155)
+.|..|...+ ....... =|..||..|..+.........|..|...+
T Consensus 16 ~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 62 (74)
T 2yur_A 16 LLCLICKDIM--TDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 62 (74)
T ss_dssp GSCSSSCCCC--TTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSS
T ss_pred CCCcCCChHH--hCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcC
Confidence 5677777776 3445555 38888888887665322234677776654
No 128
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=58.51 E-value=10 Score=23.30 Aligned_cols=46 Identities=15% Similarity=0.202 Sum_probs=31.4
Q ss_pred ccccccCCcccccCCeEEe-eCCeeecHHhHHhhhcccCCCeeeecCCeec
Q psy12215 75 CFACQQCNHRFCVGDRFYL-CDNKILCEYDYEERQVFCVGDRFYLCDNKIL 124 (155)
Q Consensus 75 Cf~C~~C~~~l~~~~~~~~-~~~~~~C~~c~~~~~~~~~~~~c~~c~~~i~ 124 (155)
-+.|..|...+ ...... .=|..||..|..+.. .....|..|...+.
T Consensus 15 ~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~--~~~~~CP~Cr~~~~ 61 (108)
T 2ckl_A 15 HLMCVLCGGYF--IDATTIIECLHSFCKTCIVRYL--ETSKYCPICDVQVH 61 (108)
T ss_dssp GTBCTTTSSBC--SSEEEETTTCCEEEHHHHHHHH--TSCSBCTTTCCBSC
T ss_pred cCCCccCChHH--hCcCEeCCCCChhhHHHHHHHH--HhCCcCcCCCcccc
Confidence 36677887777 345555 458899999987765 22467888877665
No 129
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.62 E-value=2.3 Score=23.77 Aligned_cols=48 Identities=17% Similarity=0.405 Sum_probs=25.0
Q ss_pred CcccccCCcccccC----CCeEEEeCCeeecccchhcccccccccccccccc
Q psy12215 10 CLKCGCCDCRLGEV----GSTLYQKANLILCKRDYLRLFGTTGYCAACTKVI 57 (155)
Q Consensus 10 Cf~C~~C~~~l~~~----~~~~~~~~~~~~C~~c~~~~~~~~~~C~~C~~~I 57 (155)
=+.|..|...+.+. .......=|..||.+|..+.+.....|..|...|
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 66 (69)
T 2ea6_A 15 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 66 (69)
T ss_dssp CCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCC
T ss_pred CCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCcc
Confidence 35666666655321 0113344556777777665443222566666655
No 130
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=57.40 E-value=3.8 Score=27.54 Aligned_cols=45 Identities=20% Similarity=0.381 Sum_probs=23.5
Q ss_pred cccccCCcccccCCCeEEE-eCCeeecccchhccccc-cccccccccccc
Q psy12215 11 LKCGCCDCRLGEVGSTLYQ-KANLILCKRDYLRLFGT-TGYCAACTKVIP 58 (155)
Q Consensus 11 f~C~~C~~~l~~~~~~~~~-~~~~~~C~~c~~~~~~~-~~~C~~C~~~I~ 58 (155)
+.|..|...+.+ .... .=|..||..|..+.+.. ...|..|...+.
T Consensus 55 ~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 55 LMCPICLDMLKN---TMTTKECLHRFCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HBCTTTSSBCSS---EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCcccChHhhC---cCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 456666665532 2233 45666676666554321 124666666553
No 131
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.70 E-value=3.7 Score=23.84 Aligned_cols=47 Identities=15% Similarity=0.257 Sum_probs=29.7
Q ss_pred CcccccCCcccccCCCeEEEeCCeeecccchhccccc------ccccccccccccc
Q psy12215 10 CLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGT------TGYCAACTKVIPA 59 (155)
Q Consensus 10 Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~c~~~~~~~------~~~C~~C~~~I~~ 59 (155)
=+.|..|...+.+ .....=|..||..|..+.+.. ...|..|...+..
T Consensus 19 ~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 19 EVTCPICLELLTQ---PLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCTTTCSCCSS---CBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCCcccCC---ceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 4678888777742 233456678888888664321 2268888777754
No 132
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=56.21 E-value=5.3 Score=25.03 Aligned_cols=46 Identities=20% Similarity=0.525 Sum_probs=28.9
Q ss_pred cccccCCcccccCCCeEEEeCCeeecccchhccccc-ccccccccccccc
Q psy12215 11 LKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGT-TGYCAACTKVIPA 59 (155)
Q Consensus 11 f~C~~C~~~l~~~~~~~~~~~~~~~C~~c~~~~~~~-~~~C~~C~~~I~~ 59 (155)
+.|..|...+.+ .....=|..||..|..+.... ...|+.|..++..
T Consensus 24 ~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 24 ISCQICEHILAD---PVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp TBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCcHhcC---cEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 567777776632 344566778888887654421 1267777777754
No 133
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=56.02 E-value=4.3 Score=23.33 Aligned_cols=46 Identities=20% Similarity=0.265 Sum_probs=28.3
Q ss_pred CcccccCCcccccCCCeEEEeCCeeecccchhccccc-------cccccccccccc
Q psy12215 10 CLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGT-------TGYCAACTKVIP 58 (155)
Q Consensus 10 Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~c~~~~~~~-------~~~C~~C~~~I~ 58 (155)
=+.|..|...+.+ .....=|..||.+|..+.+.. ...|..|...+.
T Consensus 12 ~~~C~IC~~~~~~---p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 12 EVTCPICLELLTE---PLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS 64 (79)
T ss_dssp CCEETTTTEECSS---CCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred CCCCcCCCcccCC---eeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence 4678888777743 223456677888887764422 125777766664
No 134
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=54.43 E-value=4 Score=25.02 Aligned_cols=46 Identities=15% Similarity=0.365 Sum_probs=29.1
Q ss_pred cccccCCcccccCCCeEE-EeCCeeecccchhcccccc-cccccccccccc
Q psy12215 11 LKCGCCDCRLGEVGSTLY-QKANLILCKRDYLRLFGTT-GYCAACTKVIPA 59 (155)
Q Consensus 11 f~C~~C~~~l~~~~~~~~-~~~~~~~C~~c~~~~~~~~-~~C~~C~~~I~~ 59 (155)
+.|..|...+.+ ... ..=|..||..|..+.+... ..|+.|...+..
T Consensus 23 ~~C~IC~~~~~~---p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 23 FRCFICMEKLRD---ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp TBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCccCCccccC---ccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 567888777632 233 4456778888877654322 268888777754
No 135
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=53.16 E-value=9.1 Score=21.09 Aligned_cols=49 Identities=18% Similarity=0.377 Sum_probs=31.3
Q ss_pred cccccCCc-ccccCCCe-EEEeCCeeecccchhcccc-cccccccccccccc
Q psy12215 11 LKCGCCDC-RLGEVGST-LYQKANLILCKRDYLRLFG-TTGYCAACTKVIPA 59 (155)
Q Consensus 11 f~C~~C~~-~l~~~~~~-~~~~~~~~~C~~c~~~~~~-~~~~C~~C~~~I~~ 59 (155)
+.|..|.. .+...... ....=|..||..|..+.+. ....|..|.+.+..
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 56788877 55322111 2346678899999877632 11269999888865
No 136
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=52.01 E-value=8 Score=24.12 Aligned_cols=46 Identities=24% Similarity=0.426 Sum_probs=26.1
Q ss_pred CcccccCCcccccCCCeEEEeCCeeecccchhccccc-cccccccccccc
Q psy12215 10 CLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGT-TGYCAACTKVIP 58 (155)
Q Consensus 10 Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~c~~~~~~~-~~~C~~C~~~I~ 58 (155)
-|.|..|...+.. .....=|..||..|..+.+.. ...|..|...+.
T Consensus 15 ~~~C~iC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 15 ECQCGICMEILVE---PVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHBCTTTCSBCSS---CEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCccCCcccCc---eeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 3677788776632 234455667777777654421 124666666553
No 137
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=51.80 E-value=12 Score=23.59 Aligned_cols=47 Identities=11% Similarity=0.088 Sum_probs=32.6
Q ss_pred ccccccCCcccccCCeEEeeCCeeecHHhHHhhhcccCCCeeeecCCeec
Q psy12215 75 CFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFCVGDRFYLCDNKIL 124 (155)
Q Consensus 75 Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~~~~~c~~c~~~i~ 124 (155)
-+.|..|...+ .......=|..||..|..+... .....|..|...+.
T Consensus 52 ~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~-~~~~~CP~Cr~~~~ 98 (124)
T 3fl2_A 52 TFQCICCQELV--FRPITTVCQHNVCKDCLDRSFR-AQVFSCPACRYDLG 98 (124)
T ss_dssp HTBCTTTSSBC--SSEEECTTSCEEEHHHHHHHHH-TTCCBCTTTCCBCC
T ss_pred CCCCCcCChHH--cCcEEeeCCCcccHHHHHHHHh-HCcCCCCCCCccCC
Confidence 36788888877 3455555589999999876542 22347888887775
No 138
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=51.65 E-value=8.3 Score=26.69 Aligned_cols=49 Identities=8% Similarity=0.043 Sum_probs=36.1
Q ss_pred ccCcccccCCcccccCCCeEEEeCCeeecccchhccccccc-ccccccccccc
Q psy12215 8 EDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTG-YCAACTKVIPA 59 (155)
Q Consensus 8 ~~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~c~~~~~~~~~-~C~~C~~~I~~ 59 (155)
+.-|.|..|...+. .+.....|..||..|..+.+...+ .|+.|+.++..
T Consensus 104 p~~f~CPI~~elm~---DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMR---EPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cHhhcccCccccCC---CCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 56689999988874 257778999999998766543211 58888888764
No 139
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=48.97 E-value=6.6 Score=25.86 Aligned_cols=47 Identities=17% Similarity=0.300 Sum_probs=32.5
Q ss_pred cCcccccCCcccccCCCeEEEeCCeeecccchhccccccc-cccccccccc
Q psy12215 9 DCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTG-YCAACTKVIP 58 (155)
Q Consensus 9 ~Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~c~~~~~~~~~-~C~~C~~~I~ 58 (155)
.=|.|..|...+.+ .....=|-.||..|..+...... .|..|..+|.
T Consensus 30 ~~~~C~IC~~~~~~---pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 30 AKYLCSACRNVLRR---PFQAQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp GGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred cCcCCCCCChhhcC---cEECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 44788888887742 35567778899999877654221 6888888764
No 140
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=48.77 E-value=17 Score=22.42 Aligned_cols=33 Identities=21% Similarity=0.402 Sum_probs=24.5
Q ss_pred eeCCeeecHHhHHhhhcccCCCeeeecCCeecchh
Q psy12215 93 LCDNKILCEYDYEERQVFCVGDRFYLCDNKILCEY 127 (155)
Q Consensus 93 ~~~~~~~C~~c~~~~~~~~~~~~c~~c~~~i~c~~ 127 (155)
.-.+..+|..|...+ +.+.++|.+|..++..++
T Consensus 43 ~C~dHYLCl~CLtlm--L~~SdrCpIC~~pLPtkl 75 (99)
T 2ko5_A 43 ECNNHYLCLNCLTLL--LSVSNRCPICKMPLPTKL 75 (99)
T ss_dssp ECSSCEEEHHHHHHT--CSSSSEETTTTEECCCCS
T ss_pred eecchhhHHHHHHHH--HhhccCCcccCCcCCcce
Confidence 335667788887654 478999999999988444
No 141
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=47.36 E-value=9.5 Score=25.33 Aligned_cols=46 Identities=22% Similarity=0.439 Sum_probs=24.4
Q ss_pred cccccCCcccccCCCeEEEeCCeeecccchhccccccc-ccccccccccc
Q psy12215 11 LKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTG-YCAACTKVIPA 59 (155)
Q Consensus 11 f~C~~C~~~l~~~~~~~~~~~~~~~C~~c~~~~~~~~~-~C~~C~~~I~~ 59 (155)
+.|..|...+.+ .....=|..||..|....+.... .|..|...+..
T Consensus 79 ~~C~IC~~~~~~---pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 79 FMCVCCQELVYQ---PVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQ 125 (150)
T ss_dssp TBCTTTSSBCSS---EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CEeecCChhhcC---CEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCC
Confidence 566666665532 33445556667766655432111 46666666543
No 142
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=46.68 E-value=12 Score=20.98 Aligned_cols=26 Identities=31% Similarity=0.784 Sum_probs=19.2
Q ss_pred cccccCCcccccCCCeEEEeCCe--eecc
Q psy12215 11 LKCGCCDCRLGEVGSTLYQKANL--ILCK 37 (155)
Q Consensus 11 f~C~~C~~~l~~~~~~~~~~~~~--~~C~ 37 (155)
..|+.|+++|.. +++.|.+.|. +||.
T Consensus 21 v~C~~CKk~lqK-GQtAyqrkGs~~LFCS 48 (62)
T 2das_A 21 ITCANCKKPLQK-GQTAYQRKGSAHLFCS 48 (62)
T ss_dssp CBCTTTCCBCCT-TSCCEECTTCCCEESS
T ss_pred cChhhccchhhc-CceeeeecCchhheec
Confidence 578899999985 6777777664 6764
No 143
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=45.44 E-value=6.6 Score=24.21 Aligned_cols=46 Identities=28% Similarity=0.547 Sum_probs=26.6
Q ss_pred cccccCCcccccCCCeEEEeCCeeecccchhcccccc---cccccccccccc
Q psy12215 11 LKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTT---GYCAACTKVIPA 59 (155)
Q Consensus 11 f~C~~C~~~l~~~~~~~~~~~~~~~C~~c~~~~~~~~---~~C~~C~~~I~~ 59 (155)
+.|..|...+.+ .....=|..||..|..+.+... ..|..|...+..
T Consensus 22 ~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 22 LECPICLELIKE---PVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp TSCSSSCCCCSS---CCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCcccChhhcC---eEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 567777766632 1223456677888876554321 147777666643
No 144
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=42.80 E-value=9.3 Score=21.71 Aligned_cols=27 Identities=19% Similarity=0.443 Sum_probs=17.8
Q ss_pred cccccccccccCceEEecc---Cccccccc
Q psy12215 49 YCAACTKVIPAFEMVMRAK---NNVYHLEC 75 (155)
Q Consensus 49 ~C~~C~~~I~~~~~~~~~~---~~~~H~~C 75 (155)
.|..|.+++.+++..|.-. ...||..|
T Consensus 10 ~C~~C~~p~~~~~~mI~CD~~C~~WfH~~C 39 (65)
T 2vpb_A 10 PCGICTNEVNDDQDAILCEASCQKWFHRIC 39 (65)
T ss_dssp BCTTTCSBCCTTSCEEEBTTTTCCEEEHHH
T ss_pred cCccCCCccCCCCCeEecccCccccCchhc
Confidence 5888888876655555555 45577655
No 145
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=42.46 E-value=7.6 Score=20.91 Aligned_cols=42 Identities=21% Similarity=0.392 Sum_probs=23.1
Q ss_pred cccccCCcccccCCCeEEEeCCeeecccchhccccccccccccccccc
Q psy12215 11 LKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIP 58 (155)
Q Consensus 11 f~C~~C~~~l~~~~~~~~~~~~~~~C~~c~~~~~~~~~~C~~C~~~I~ 58 (155)
+.|..|...+.. .....=|..||..|..+ ... .|..|...+.
T Consensus 7 ~~C~IC~~~~~~---p~~l~CgH~fC~~Ci~~-~~~--~CP~Cr~~~~ 48 (56)
T 1bor_A 7 LRCQQCQAEAKC---PKLLPCLHTLCSGCLEA-SGM--QCPICQAPWP 48 (56)
T ss_dssp SSCSSSCSSCBC---CSCSTTSCCSBTTTCSS-SSS--SCSSCCSSSS
T ss_pred CCceEeCCccCC---eEEcCCCCcccHHHHcc-CCC--CCCcCCcEee
Confidence 567777665532 12233455677777655 222 5777766654
No 146
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.53 E-value=25 Score=18.96 Aligned_cols=32 Identities=9% Similarity=0.091 Sum_probs=22.4
Q ss_pred ccccccCCcccccCCeEEeeCCeeecHHhHHhhh
Q psy12215 75 CFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQ 108 (155)
Q Consensus 75 Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~ 108 (155)
-+.|.+|...+ .......=|..||..|..+..
T Consensus 20 ~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~ 51 (63)
T 2ysj_A 20 EVICPICLDIL--QKPVTIDCGHNFCLKCITQIG 51 (63)
T ss_dssp CCBCTTTCSBC--SSCEECTTSSEECHHHHHHHH
T ss_pred CCCCCcCCchh--CCeEEeCCCCcchHHHHHHHH
Confidence 36778887777 334445458899999987765
No 147
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=39.29 E-value=13 Score=19.63 Aligned_cols=10 Identities=30% Similarity=0.843 Sum_probs=6.2
Q ss_pred cccccCCc-cc
Q psy12215 11 LKCGCCDC-RL 20 (155)
Q Consensus 11 f~C~~C~~-~l 20 (155)
+.|..|+. +|
T Consensus 6 ~~CP~C~~~~l 16 (50)
T 1pft_A 6 KVCPACESAEL 16 (50)
T ss_dssp CSCTTTSCCCE
T ss_pred EeCcCCCCcce
Confidence 46777765 44
No 148
>3oue_A Cytochrome C family protein; multiheme cytochrome-C, electron transfer, Fe reduction, GEO sulfurreducens, cytochrome C7 (C3) fold; HET: HEM; 2.15A {Geobacter sulfurreducens}
Probab=36.69 E-value=3.1 Score=28.25 Aligned_cols=109 Identities=17% Similarity=0.315 Sum_probs=56.9
Q ss_pred cccccCCcccccCC--C-e--EEEeCCeeecccchhc--cccccccccccccccccCceEE------eccCccccccccc
Q psy12215 11 LKCGCCDCRLGEVG--S-T--LYQKANLILCKRDYLR--LFGTTGYCAACTKVIPAFEMVM------RAKNNVYHLECFA 77 (155)
Q Consensus 11 f~C~~C~~~l~~~~--~-~--~~~~~~~~~C~~c~~~--~~~~~~~C~~C~~~I~~~~~~~------~~~~~~~H~~Cf~ 77 (155)
+.|..|...+.... . . +.....--+|-.|... .|.+...|..|...+.+.+... ...+...|..=+.
T Consensus 28 ~~C~~CH~~~~~~~~g~~~~t~a~~~~~~~C~~CH~g~~af~~~~~C~~CH~~~~~~~i~~~~~~~~V~F~H~~H~~~~~ 107 (158)
T 3oue_A 28 YKCNECHTKLFAYKAGAKRFTMADMDKGKSCGACHNGKDAFSSASDCGKCHPGLKPAKLTYKTSVGEAYFDHDIHLSMFK 107 (158)
T ss_dssp CCGGGTBTTTBCSSSCCCCCCHHHHHTTCGGGGTBSSSSBCCTTSCHHHHCGGGCCCCEEEEETTEEEEECHHHHHTTCC
T ss_pred CChhhhccChhcccccccccccccCCCCCchhhhcCCcccCChhhhchhhhhcccccceEeecCCCCccCChhHhCCCCC
Confidence 36888877664221 0 0 1111223579999973 3555346999987443322111 1123345755588
Q ss_pred cccCCcccccC----CeEEee--CCeeecHHhHHhhhcccCCCeeeec
Q psy12215 78 CQQCNHRFCVG----DRFYLC--DNKILCEYDYEERQVFCVGDRFYLC 119 (155)
Q Consensus 78 C~~C~~~l~~~----~~~~~~--~~~~~C~~c~~~~~~~~~~~~c~~c 119 (155)
|..|...+-.. ..+... ....+|..|...+..+.+...|..|
T Consensus 108 C~~CH~~v~~~~~~~~~~tm~~~~~gk~Cg~CH~gk~Af~~~~~C~~C 155 (158)
T 3oue_A 108 CADCHTKVFKYRKGSAPATMADMEKGKSCGVCHNGKDAFSVADDCVKC 155 (158)
T ss_dssp GGGTBTTTBCSSTTSSCCCHHHHHTTCGGGGTBTTTSBCCSSSCGGGT
T ss_pred hhhhccchhhcccCCCCcchhhhhccChhHhhcCCCccCCCcccHHHH
Confidence 99998876221 112111 1224888888655444444455555
No 149
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=35.36 E-value=13 Score=21.73 Aligned_cols=50 Identities=22% Similarity=0.481 Sum_probs=29.1
Q ss_pred CcccccCCcccccCCCeEEE-eCCeeecccchhcccc-cccccccccccccc
Q psy12215 10 CLKCGCCDCRLGEVGSTLYQ-KANLILCKRDYLRLFG-TTGYCAACTKVIPA 59 (155)
Q Consensus 10 Cf~C~~C~~~l~~~~~~~~~-~~~~~~C~~c~~~~~~-~~~~C~~C~~~I~~ 59 (155)
=+.|..|-.++...+..+.. .=|..||..|+.+... ....|..|.+++..
T Consensus 11 ~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 11 PVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 62 (78)
T ss_dssp CCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred CCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence 36777776666322111111 2466788888876541 11268888887754
No 150
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.23 E-value=23 Score=18.56 Aligned_cols=31 Identities=10% Similarity=0.173 Sum_probs=19.5
Q ss_pred cccccCCcccccCCeEEeeCCeeecHHhHHhhh
Q psy12215 76 FACQQCNHRFCVGDRFYLCDNKILCEYDYEERQ 108 (155)
Q Consensus 76 f~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~ 108 (155)
+.|..|...+. ......=|..||..|..+..
T Consensus 16 ~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~ 46 (58)
T 2ecj_A 16 ASCSVCLEYLK--EPVIIECGHNFCKACITRWW 46 (58)
T ss_dssp CBCSSSCCBCS--SCCCCSSCCCCCHHHHHHHT
T ss_pred CCCccCCcccC--ccEeCCCCCccCHHHHHHHH
Confidence 56777777662 22333347788888887764
No 151
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.01 E-value=13 Score=20.23 Aligned_cols=11 Identities=27% Similarity=0.495 Sum_probs=7.0
Q ss_pred cccccCCcccc
Q psy12215 11 LKCGCCDCRLG 21 (155)
Q Consensus 11 f~C~~C~~~l~ 21 (155)
|.|..|++.+.
T Consensus 19 ~~C~~C~k~f~ 29 (73)
T 2ctu_A 19 QKCSKCGIIFI 29 (73)
T ss_dssp EECSSSCCEEE
T ss_pred eeCCcccchhC
Confidence 66777766653
No 152
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens}
Probab=34.99 E-value=13 Score=23.33 Aligned_cols=13 Identities=31% Similarity=0.741 Sum_probs=10.1
Q ss_pred cccccccccccCc
Q psy12215 49 YCAACTKVIPAFE 61 (155)
Q Consensus 49 ~C~~C~~~I~~~~ 61 (155)
.|..|+..|.-++
T Consensus 27 ~Ck~C~~kI~Kge 39 (106)
T 2dmj_A 27 SCKKCSESIPKDS 39 (106)
T ss_dssp BCSSSCCBCCTTC
T ss_pred cchhhCCccCCCC
Confidence 6999999887544
No 153
>1v9x_A Poly (ADP-ribose) polymerase; PARP, DNA repair, inflammation, cell death, structural genomics; NMR {Arabidopsis thaliana}
Probab=34.98 E-value=13 Score=23.75 Aligned_cols=13 Identities=31% Similarity=0.631 Sum_probs=9.8
Q ss_pred cccccccccccCc
Q psy12215 49 YCAACTKVIPAFE 61 (155)
Q Consensus 49 ~C~~C~~~I~~~~ 61 (155)
.|..|+..|.-++
T Consensus 22 ~Ck~Ck~kI~Kge 34 (114)
T 1v9x_A 22 SCKTCKSVINKEN 34 (114)
T ss_dssp BCSSSCCBCCSSS
T ss_pred CchhhCCccCCCC
Confidence 6888888886544
No 154
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=34.78 E-value=14 Score=18.08 Aligned_cols=25 Identities=16% Similarity=0.216 Sum_probs=16.8
Q ss_pred Ceeecccchhccccccccccccccc
Q psy12215 32 NLILCKRDYLRLFGTTGYCAACTKV 56 (155)
Q Consensus 32 ~~~~C~~c~~~~~~~~~~C~~C~~~ 56 (155)
|+=-|..|+..+...+.+|..|..+
T Consensus 6 g~W~C~~C~~~N~~~~~kC~aC~tp 30 (33)
T 3gj3_B 6 GTWDCDTCLVQNKPEAVKCVACETP 30 (33)
T ss_dssp CCEECTTTCCEECTTCSBCTTTCCB
T ss_pred CceeCCcccCCCccccCEEcccCCC
Confidence 3445777887776655578888654
No 155
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=33.77 E-value=23 Score=25.32 Aligned_cols=50 Identities=10% Similarity=-0.050 Sum_probs=36.1
Q ss_pred cccccccccCCcccccCCeEEeeCCeeecHHhHHhhhcccCCCeeeecCCeec
Q psy12215 72 HLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVFCVGDRFYLCDNKIL 124 (155)
Q Consensus 72 H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~~~~~~~~c~~c~~~i~ 124 (155)
-+.-|.|..|...+ ........|..||..|..+.... .+..|..|..++.
T Consensus 205 ~~~~~~c~i~~~~~--~dPv~~~~gh~f~~~~i~~~~~~-~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 205 IPDYLCGKISFELM--REPCITPSGITYDRKDIEEHLQR-VGHFNPVTRSPLT 254 (281)
T ss_dssp CCSTTBCTTTCSBC--SSEEECSSCCEEETTHHHHHHHH-TCSSCTTTCCCCC
T ss_pred CCcccCCcCcCCHh--cCCeECCCCCEECHHHHHHHHHH-CCCCCcCCCCCCc
Confidence 34668899998887 67777778999999997765421 1333888877664
No 156
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1
Probab=30.95 E-value=22 Score=17.49 Aligned_cols=26 Identities=15% Similarity=0.278 Sum_probs=17.9
Q ss_pred CCeeecccchhccccccccccccccc
Q psy12215 31 ANLILCKRDYLRLFGTTGYCAACTKV 56 (155)
Q Consensus 31 ~~~~~C~~c~~~~~~~~~~C~~C~~~ 56 (155)
.|.--|..|+.++.+.+.+|..|..+
T Consensus 5 ~G~W~C~~C~v~N~~~~~kC~aCet~ 30 (34)
T 3gj5_B 5 SGSWDCEVCLVQNKADSTKCIACESA 30 (34)
T ss_dssp -CCEECTTTCCEECSSCSBCTTTCCB
T ss_pred CCceECCeeEeECccccCEEcccCCc
Confidence 44556888888877666678888654
No 157
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=29.79 E-value=14 Score=21.20 Aligned_cols=29 Identities=28% Similarity=0.555 Sum_probs=17.0
Q ss_pred cccCCcccccCCeEEeeCCeeecHHhHHhhh
Q psy12215 78 CQQCNHRFCVGDRFYLCDNKILCEYDYEERQ 108 (155)
Q Consensus 78 C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~~ 108 (155)
|.+|+.-. .-++..=++.+||..||...-
T Consensus 11 C~ICneDA--tlrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 11 CCICNEDA--TLRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CTTTCSCC--CEEETTTTSEEECSSHHHHHT
T ss_pred eEEeCCCC--eEEecCCCCceehHHHHHHHc
Confidence 44554433 223333457889999987653
No 158
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=29.63 E-value=44 Score=18.86 Aligned_cols=41 Identities=20% Similarity=0.307 Sum_probs=21.5
Q ss_pred cccccCCcccccCCeEEeeCCee-ecHHhHHhhhcccCCCeeeecCCeec
Q psy12215 76 FACQQCNHRFCVGDRFYLCDNKI-LCEYDYEERQVFCVGDRFYLCDNKIL 124 (155)
Q Consensus 76 f~C~~C~~~l~~~~~~~~~~~~~-~C~~c~~~~~~~~~~~~c~~c~~~i~ 124 (155)
+.|..|...+ .+.....=|.. +|..|..+. ..|..|..+|.
T Consensus 25 ~~C~iC~~~~--~~~~~~pCgH~~~C~~C~~~~------~~CP~Cr~~i~ 66 (74)
T 4ic3_A 25 KLCKICMDRN--IAIVFVPCGHLVTCKQCAEAV------DKCPMCYTVIT 66 (74)
T ss_dssp TBCTTTSSSB--CCEEEETTCCBCCCHHHHTTC------SBCTTTCCBCS
T ss_pred CCCCCCCCCC--CCEEEcCCCChhHHHHhhhcC------ccCCCcCcCcc
Confidence 3455555544 23333333566 777776543 45666665554
No 159
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=29.59 E-value=41 Score=18.41 Aligned_cols=27 Identities=15% Similarity=0.264 Sum_probs=18.9
Q ss_pred Cee-ecHHhHHhhhcccCCCeeeecCCeec
Q psy12215 96 NKI-LCEYDYEERQVFCVGDRFYLCDNKIL 124 (155)
Q Consensus 96 ~~~-~C~~c~~~~~~~~~~~~c~~c~~~i~ 124 (155)
|.. +|..|..+.. ..+..|.+|..+|.
T Consensus 28 gH~~~C~~C~~~~~--~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 28 GHLVTCFHCARRLK--KAGASCPICKKEIQ 55 (63)
T ss_dssp EEEEECHHHHHHHH--HTTCBCTTTCCBCC
T ss_pred CCHhHHHHHHHHHH--HhCCcCCCcCchhh
Confidence 565 8888887654 22467888888775
No 160
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=29.47 E-value=19 Score=14.86 Aligned_cols=10 Identities=40% Similarity=1.119 Sum_probs=5.9
Q ss_pred cccccCCccc
Q psy12215 11 LKCGCCDCRL 20 (155)
Q Consensus 11 f~C~~C~~~l 20 (155)
|.|..|++.+
T Consensus 2 ~~C~~C~k~f 11 (27)
T 1znf_A 2 YKCGLCERSF 11 (27)
T ss_dssp CBCSSSCCBC
T ss_pred ccCCCCCCcC
Confidence 4566666655
No 161
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=29.42 E-value=29 Score=16.55 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=14.5
Q ss_pred Ceeecccchhcccccccccccccccc
Q psy12215 32 NLILCKRDYLRLFGTTGYCAACTKVI 57 (155)
Q Consensus 32 ~~~~C~~c~~~~~~~~~~C~~C~~~I 57 (155)
|+=.|..|....|.....|..|+.+-
T Consensus 4 gDW~C~~C~~~Nfa~r~~C~~C~~pr 29 (32)
T 2lk0_A 4 EDWLCNKCCLNNFRKRLKCFRCGADK 29 (32)
T ss_dssp SEEECTTTCCEEETTCCBCTTTCCBT
T ss_pred CCCCcCcCcCCcChhcceecCCCCcC
Confidence 45556666655555444566666543
No 162
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=29.41 E-value=41 Score=17.91 Aligned_cols=8 Identities=13% Similarity=0.289 Sum_probs=3.2
Q ss_pred Ceeecccc
Q psy12215 32 NLILCKRD 39 (155)
Q Consensus 32 ~~~~C~~c 39 (155)
++.+|..|
T Consensus 36 ~R~~C~kC 43 (50)
T 3j20_Y 36 DRWACGKC 43 (50)
T ss_dssp SEEECSSS
T ss_pred CeEECCCC
Confidence 34444433
No 163
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=29.29 E-value=27 Score=20.04 Aligned_cols=25 Identities=28% Similarity=0.567 Sum_probs=16.5
Q ss_pred cccccCCcccccCCCeEEEeCCeeecccch
Q psy12215 11 LKCGCCDCRLGEVGSTLYQKANLILCKRDY 40 (155)
Q Consensus 11 f~C~~C~~~l~~~~~~~~~~~~~~~C~~c~ 40 (155)
+.|-.|+.+|. +...++.++|..|-
T Consensus 9 L~CP~ck~~L~-----~~~~~~~LiC~~cg 33 (68)
T 2hf1_A 9 LVCPLCKGPLV-----FDKSKDELICKGDR 33 (68)
T ss_dssp CBCTTTCCBCE-----EETTTTEEEETTTT
T ss_pred eECCCCCCcCe-----EeCCCCEEEcCCCC
Confidence 56778887772 44456777777664
No 164
>3odc_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.80A {Homo sapiens} PDB: 3ode_A 2l31_A
Probab=29.23 E-value=15 Score=23.34 Aligned_cols=13 Identities=23% Similarity=0.506 Sum_probs=9.6
Q ss_pred cccccccccccCc
Q psy12215 49 YCAACTKVIPAFE 61 (155)
Q Consensus 49 ~C~~C~~~I~~~~ 61 (155)
.|..|...|.-++
T Consensus 21 ~Ck~C~~kI~Kg~ 33 (111)
T 3odc_A 21 TCKGCMEKIEKGQ 33 (111)
T ss_dssp BCTTTCCBCCTTC
T ss_pred cccccCCCccCCc
Confidence 6888888886544
No 165
>3od8_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.40A {Homo sapiens} PDB: 3oda_A 4dqy_A*
Probab=29.21 E-value=14 Score=23.71 Aligned_cols=13 Identities=31% Similarity=0.741 Sum_probs=10.2
Q ss_pred cccccccccccCc
Q psy12215 49 YCAACTKVIPAFE 61 (155)
Q Consensus 49 ~C~~C~~~I~~~~ 61 (155)
.|..|.+.|.-++
T Consensus 40 ~Ck~C~~kI~Kge 52 (116)
T 3od8_A 40 SCKKCSESIPKDS 52 (116)
T ss_dssp BCTTTCCBCCTTS
T ss_pred cCcccCCccCCCC
Confidence 6999999887544
No 166
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=28.61 E-value=28 Score=19.91 Aligned_cols=26 Identities=19% Similarity=0.241 Sum_probs=17.8
Q ss_pred CcccccCCcccccCCCeEEEeCCeeecccch
Q psy12215 10 CLKCGCCDCRLGEVGSTLYQKANLILCKRDY 40 (155)
Q Consensus 10 Cf~C~~C~~~l~~~~~~~~~~~~~~~C~~c~ 40 (155)
=+.|-.|+.+| .+...+|.++|..|-
T Consensus 10 iL~CP~ck~~L-----~~~~~~g~LvC~~c~ 35 (67)
T 2jny_A 10 VLACPKDKGPL-----RYLESEQLLVNERLN 35 (67)
T ss_dssp CCBCTTTCCBC-----EEETTTTEEEETTTT
T ss_pred HhCCCCCCCcC-----eEeCCCCEEEcCCCC
Confidence 35788888877 244556788887764
No 167
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=28.60 E-value=28 Score=19.92 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=16.7
Q ss_pred cccccCCcccccCCCeEEEeCCeeecccch
Q psy12215 11 LKCGCCDCRLGEVGSTLYQKANLILCKRDY 40 (155)
Q Consensus 11 f~C~~C~~~l~~~~~~~~~~~~~~~C~~c~ 40 (155)
+.|-.|+.+|. +...++.++|..|-
T Consensus 9 L~CP~ck~~L~-----~~~~~~~LiC~~cg 33 (68)
T 2jr6_A 9 LVCPVTKGRLE-----YHQDKQELWSRQAK 33 (68)
T ss_dssp CBCSSSCCBCE-----EETTTTEEEETTTT
T ss_pred eECCCCCCcCe-----EeCCCCEEEcCCCC
Confidence 57888888772 44456777777664
No 168
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=28.28 E-value=27 Score=20.15 Aligned_cols=25 Identities=28% Similarity=0.632 Sum_probs=17.0
Q ss_pred cccccCCcccccCCCeEEEeCCeeecccch
Q psy12215 11 LKCGCCDCRLGEVGSTLYQKANLILCKRDY 40 (155)
Q Consensus 11 f~C~~C~~~l~~~~~~~~~~~~~~~C~~c~ 40 (155)
+.|-.|+.+|. +...++.++|..|-
T Consensus 9 L~CP~ck~~L~-----~~~~~~~LiC~~cg 33 (70)
T 2js4_A 9 LVCPVCKGRLE-----FQRAQAELVCNADR 33 (70)
T ss_dssp CBCTTTCCBEE-----EETTTTEEEETTTT
T ss_pred eECCCCCCcCE-----EeCCCCEEEcCCCC
Confidence 57888888872 44456778777764
No 169
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.05 E-value=48 Score=19.30 Aligned_cols=45 Identities=20% Similarity=0.207 Sum_probs=23.4
Q ss_pred Ceeecccchhccccc--cccccccccccccCceEEec--cCccccccccc
Q psy12215 32 NLILCKRDYLRLFGT--TGYCAACTKVIPAFEMVMRA--KNNVYHLECFA 77 (155)
Q Consensus 32 ~~~~C~~c~~~~~~~--~~~C~~C~~~I~~~~~~~~~--~~~~~H~~Cf~ 77 (155)
+.++|..|-...... .-.|..|++.-.+. .++.- =+..||..|..
T Consensus 9 ~~~~c~~C~~~~~w~C~~c~C~vC~~~~~~~-~ll~CD~C~~~yH~~Cl~ 57 (77)
T 2e6s_A 9 NDTECDLCGGDPEKKCHSCSCRVCGGKHEPN-MQLLCDECNVAYHIYCLN 57 (77)
T ss_dssp CCCCCTTTCSCSSSCCSSSSCSSSCCCCCST-TEEECSSSCCEEETTSSS
T ss_pred CCccChhhcCCCCeECCCCCCcCcCCcCCCC-CEEEcCCCCccccccccC
Confidence 456666665433110 00367777654432 33332 25778888764
No 170
>3py7_A Maltose-binding periplasmic protein,paxillin LD1, chimera; viral protein; HET: MLR; 2.29A {Escherichia coli}
Probab=27.88 E-value=38 Score=26.83 Aligned_cols=91 Identities=15% Similarity=0.202 Sum_probs=46.3
Q ss_pred cccccCCccccc--------CCCeEEEeCCeee--cccchhcccccccccc-ccccccccCceEEeccCccccccccccc
Q psy12215 11 LKCGCCDCRLGE--------VGSTLYQKANLIL--CKRDYLRLFGTTGYCA-ACTKVIPAFEMVMRAKNNVYHLECFACQ 79 (155)
Q Consensus 11 f~C~~C~~~l~~--------~~~~~~~~~~~~~--C~~c~~~~~~~~~~C~-~C~~~I~~~~~~~~~~~~~~H~~Cf~C~ 79 (155)
+.|--|.+.|.. .....+-++|.+| |..|-...-..--+.. .| .+.+ ..+-...++....-..+|.
T Consensus 401 ~~~~~c~~~l~~~~~~~f~~~~l~~v~r~~~~~~~c~~c~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~irc~ 477 (523)
T 3py7_A 401 LDCLWCREPLTEVDAFRCMVKDFHVVIREGCRYGACTICLENCLATERRLWQGV--PVTG-EEAELLHGKTLDRLCIRCC 477 (523)
T ss_dssp CEETTTCCBCCHHHHHHHHHTTCCCEEETTEEEECCHHHHHHHHHHHHHHSCCE--EECH-HHHHHHTTSCGGGSCCEET
T ss_pred cEEEecCCcCCHHHHHHHHhcCeEEEEECCeeeeehHHHHHHHHHHHHHhCCCc--eeEh-hHHHHHHCCChhheEEEHh
Confidence 567778888852 2234567888888 7776542110000000 00 0111 1111223555566667888
Q ss_pred cCCcccc---------cCCeEEeeC-C--eeecHHhH
Q psy12215 80 QCNHRFC---------VGDRFYLCD-N--KILCEYDY 104 (155)
Q Consensus 80 ~C~~~l~---------~~~~~~~~~-~--~~~C~~c~ 104 (155)
.|.++|. .+..|.... + +-.|..|.
T Consensus 478 ~c~~~l~~~ek~~~~~~~~~~~~~~~~~w~g~c~~c~ 514 (523)
T 3py7_A 478 YCGGKLTKNEKHRHVLFNEPFCKTRANIIRGRCYDCC 514 (523)
T ss_dssp TTCCBCCHHHHHHHHHTTCCEEECGGGCEEECCGGGC
T ss_pred HCCCcCCHHHHHHHHHCCCCEEEEcCCEEEeEChhhC
Confidence 8888874 344555442 3 45666664
No 171
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=27.39 E-value=21 Score=14.94 Aligned_cols=10 Identities=20% Similarity=0.723 Sum_probs=6.5
Q ss_pred cccccCCccc
Q psy12215 11 LKCGCCDCRL 20 (155)
Q Consensus 11 f~C~~C~~~l 20 (155)
|.|..|++.+
T Consensus 3 ~~C~~C~~~f 12 (29)
T 1ard_A 3 FVCEVCTRAF 12 (29)
T ss_dssp CBCTTTCCBC
T ss_pred eECCCCCccc
Confidence 5667776655
No 172
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=27.30 E-value=17 Score=15.15 Aligned_cols=10 Identities=30% Similarity=0.783 Sum_probs=6.9
Q ss_pred cccccCCccc
Q psy12215 11 LKCGCCDCRL 20 (155)
Q Consensus 11 f~C~~C~~~l 20 (155)
|.|..|++.+
T Consensus 4 ~~C~~C~k~f 13 (27)
T 2kvh_A 4 FSCSLCPQRS 13 (27)
T ss_dssp EECSSSSCEE
T ss_pred ccCCCcChhh
Confidence 5677777665
No 173
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=26.83 E-value=37 Score=21.04 Aligned_cols=27 Identities=22% Similarity=0.518 Sum_probs=15.7
Q ss_pred cccccccccccCceEEecc---Cccccccc
Q psy12215 49 YCAACTKVIPAFEMVMRAK---NNVYHLEC 75 (155)
Q Consensus 49 ~C~~C~~~I~~~~~~~~~~---~~~~H~~C 75 (155)
.|..|.++..+.+..|.-. ...||..|
T Consensus 5 ~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~C 34 (105)
T 2xb1_A 5 PCGACRSEVNDDQDAILCEASCQKWFHREC 34 (105)
T ss_dssp BCTTTCSBCCTTSCEEECTTTTCCEEEGGG
T ss_pred CCCCCCCccCCCCCEEEecCCccccccccc
Confidence 5777877764433444443 45567655
No 174
>1uw0_A DNA ligase III; DNA repair, zinc finger, PARP-like finger, cell division, DNA replication, nuclear protein; HET: DNA; NMR {Homo sapiens} SCOP: g.39.1.12
Probab=26.69 E-value=19 Score=23.00 Aligned_cols=13 Identities=23% Similarity=0.322 Sum_probs=9.4
Q ss_pred cccccccccccCc
Q psy12215 49 YCAACTKVIPAFE 61 (155)
Q Consensus 49 ~C~~C~~~I~~~~ 61 (155)
.|..|+..|.-++
T Consensus 17 ~Ck~C~~kI~Kge 29 (117)
T 1uw0_A 17 GCKKCKEKIVKGV 29 (117)
T ss_dssp ECTTSSCEECTTC
T ss_pred cchhhCcccCCCC
Confidence 5888888886544
No 175
>1vq8_U 50S ribosomal protein L24E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.39.1.6 PDB: 1giy_R 1jj2_T 1k73_V* 1k8a_V* 1k9m_V* 1kc8_V* 1kd1_V* 1kqs_T* 1m1k_V* 1m90_V* 1ml5_r* 1n8r_V* 1nji_V* 1q7y_V* 1q81_V* 1q82_V* 1q86_V* 1qvf_T 1qvg_T 1s72_U* ...
Probab=26.66 E-value=35 Score=19.49 Aligned_cols=24 Identities=17% Similarity=0.433 Sum_probs=14.3
Q ss_pred ccccCCcccccC-CCeEEEeCCeee
Q psy12215 12 KCGCCDCRLGEV-GSTLYQKANLIL 35 (155)
Q Consensus 12 ~C~~C~~~l~~~-~~~~~~~~~~~~ 35 (155)
+|+-|+.++.++ |..|+..||++|
T Consensus 5 ~C~Fcg~~IyPG~G~~~Vr~Dgkvf 29 (66)
T 1vq8_U 5 ECDYCGTDIEPGTGTMFVHKDGATT 29 (66)
T ss_dssp BCTTTCCBCCSSCCEEEECTTSCEE
T ss_pred EecCcCCcccCCCceEEEeeCCcEE
Confidence 577777777643 334555666654
No 176
>3j21_V 50S ribosomal protein L24E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=26.54 E-value=38 Score=19.34 Aligned_cols=24 Identities=17% Similarity=0.380 Sum_probs=14.1
Q ss_pred ccccCCcccccC-CCeEEEeCCeee
Q psy12215 12 KCGCCDCRLGEV-GSTLYQKANLIL 35 (155)
Q Consensus 12 ~C~~C~~~l~~~-~~~~~~~~~~~~ 35 (155)
+|+-|+.++.++ +..|+..||+++
T Consensus 6 ~C~Fcg~~IyPG~G~~~Vr~Dgkvf 30 (66)
T 3j21_V 6 VCSYCGKPFEPGTGKMYVRNDGRVL 30 (66)
T ss_dssp BCTTTCSBCCTTCCEEEECSSSCEE
T ss_pred EecCcCCcccCCCCeEEEecCCcEE
Confidence 577777777643 334555666644
No 177
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=26.02 E-value=80 Score=16.89 Aligned_cols=31 Identities=10% Similarity=0.220 Sum_probs=17.8
Q ss_pred cccccCCcccccCCeEEeeCCeeecHHhHHh
Q psy12215 76 FACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106 (155)
Q Consensus 76 f~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~ 106 (155)
.+|+-|++.-........-.+...|..|...
T Consensus 12 ~~CSFCGk~~~ev~~LIaGpgv~IC~eCi~~ 42 (51)
T 2ds5_A 12 LYCSFCGKSQHEVRKLIAGPSVYICDECVDL 42 (51)
T ss_dssp CBCTTTCCBTTTSSCEEECSSCEEEHHHHHH
T ss_pred cEecCCCCCHHHhcccCCCCCCEehHHHHHH
Confidence 3577888776333334333455667777554
No 178
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=25.65 E-value=25 Score=19.42 Aligned_cols=23 Identities=13% Similarity=0.122 Sum_probs=17.4
Q ss_pred Ceeecccchhccccccccccccc
Q psy12215 32 NLILCKRDYLRLFGTTGYCAACT 54 (155)
Q Consensus 32 ~~~~C~~c~~~~~~~~~~C~~C~ 54 (155)
++..|..||.++...+..|..|+
T Consensus 18 ~k~ICrkC~ARnp~~A~~CRKCg 40 (56)
T 2ayj_A 18 LKKVCRKCGALNPIRATKCRRCH 40 (56)
T ss_dssp CCEEETTTCCEECTTCSSCTTTC
T ss_pred chhhhccccCcCCcccccccCCC
Confidence 35678999988876555788886
No 179
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.57 E-value=70 Score=18.98 Aligned_cols=32 Identities=9% Similarity=-0.025 Sum_probs=25.1
Q ss_pred ccccccCCcccccCCeEEee-CCeeecHHhHHhhh
Q psy12215 75 CFACQQCNHRFCVGDRFYLC-DNKILCEYDYEERQ 108 (155)
Q Consensus 75 Cf~C~~C~~~l~~~~~~~~~-~~~~~C~~c~~~~~ 108 (155)
-|.|..|...+ ...+... .|..||+.|-.+..
T Consensus 7 ~~~CPI~~~~~--~dPV~~~~cGh~f~r~cI~~~l 39 (94)
T 2yu4_A 7 GFTCPITKEEM--KKPVKNKVCGHTYEEDAIVRMI 39 (94)
T ss_dssp CCBCTTTCSBC--SSEEEESSSCCEEEHHHHHHHH
T ss_pred EeECcCcCchh--cCCEEcCCCCCeecHHHHHHHH
Confidence 47888888887 5677774 89999999976654
No 180
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=25.26 E-value=26 Score=16.88 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=12.5
Q ss_pred Ceeecccchhccccccccccccccc
Q psy12215 32 NLILCKRDYLRLFGTTGYCAACTKV 56 (155)
Q Consensus 32 ~~~~C~~c~~~~~~~~~~C~~C~~~ 56 (155)
|+=.|..|....|+....|..|+.+
T Consensus 5 gDW~C~~C~~~Nfa~R~~C~~C~~p 29 (33)
T 2k1p_A 5 NDWQCKTCSNVNWARRSECNMCNTP 29 (33)
T ss_dssp SSCBCSSSCCBCCTTCSBCSSSCCB
T ss_pred CCcccCCCCCccccccccccccCCc
Confidence 3444555555555443345555544
No 181
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=24.59 E-value=77 Score=18.11 Aligned_cols=32 Identities=9% Similarity=0.190 Sum_probs=18.6
Q ss_pred cccccCCcccccCCeEEeeCCeeecHHhHHhh
Q psy12215 76 FACQQCNHRFCVGDRFYLCDNKILCEYDYEER 107 (155)
Q Consensus 76 f~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~ 107 (155)
.+|+.|++.-........-.+...|..|....
T Consensus 19 ~~CSFCGK~e~eV~~LIaGpgvyICdeCI~~c 50 (67)
T 1ovx_A 19 LYCSFCGKSQHEVRKLIAGPSVYICDECVDLC 50 (67)
T ss_dssp CCCTTTCCCTTTSSSEEECSSCEEEHHHHHHH
T ss_pred cEecCCCCCHHHHcccCCCCCCChhHHHHHHH
Confidence 35788887763333443334556777776543
No 182
>2ebr_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.33 E-value=19 Score=19.12 Aligned_cols=33 Identities=15% Similarity=0.207 Sum_probs=23.2
Q ss_pred EEEeCCeeecccchhcccccccccccccccccc
Q psy12215 27 LYQKANLILCKRDYLRLFGTTGYCAACTKVIPA 59 (155)
Q Consensus 27 ~~~~~~~~~C~~c~~~~~~~~~~C~~C~~~I~~ 59 (155)
|-..+|.-=|..|+.++.+...+|..|..+=.+
T Consensus 5 fk~~~gsW~C~~C~v~N~a~~~kC~aC~~pkpg 37 (47)
T 2ebr_A 5 SSGPEGSWDCELCLVQNKADSTKCLACESAKPG 37 (47)
T ss_dssp CSSCCSSCCCSSSCCCCCSSCSBCSSSCCBCCC
T ss_pred ccCCCCeeECCeeecCCcCCcceecCcCCCCCC
Confidence 344556667888888877666688888776644
No 183
>2lbz_A Thuricin17, thurincin H; helical loops, crosslinked, antimicrobial protein; HET: DSG 2TL DSN; NMR {Bacillus thuringiensis}
Probab=24.30 E-value=30 Score=15.97 Aligned_cols=12 Identities=42% Similarity=1.198 Sum_probs=7.9
Q ss_pred cCcccccCCccc
Q psy12215 9 DCLKCGCCDCRL 20 (155)
Q Consensus 9 ~Cf~C~~C~~~l 20 (155)
.|+.|..|+..|
T Consensus 6 sclvcaacsvel 17 (31)
T 2lbz_A 6 SCLVCAACSVEL 17 (31)
T ss_dssp GGGGGGGCCSCS
T ss_pred HHHHHHHhHHHH
Confidence 467777776655
No 184
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=24.23 E-value=26 Score=14.81 Aligned_cols=10 Identities=30% Similarity=0.969 Sum_probs=6.3
Q ss_pred cccccCCccc
Q psy12215 11 LKCGCCDCRL 20 (155)
Q Consensus 11 f~C~~C~~~l 20 (155)
|.|..|++.+
T Consensus 3 ~~C~~C~k~f 12 (30)
T 1paa_A 3 YACGLCNRAF 12 (30)
T ss_dssp SBCTTTCCBC
T ss_pred cCCcccCccc
Confidence 5666676655
No 185
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=29.76 E-value=16 Score=15.04 Aligned_cols=10 Identities=30% Similarity=0.743 Sum_probs=6.3
Q ss_pred cccccCCccc
Q psy12215 11 LKCGCCDCRL 20 (155)
Q Consensus 11 f~C~~C~~~l 20 (155)
|.|..|++.+
T Consensus 3 ~~C~~C~k~f 12 (26)
T 2lvu_A 3 YVCERCGKRF 12 (26)
Confidence 4566676655
No 186
>3d00_A Tungsten formylmethanofuran dehydrogenase subunit; FWDE/GAPDH domain-like fold, structural genomics, joint CENT structural genomics; HET: MSE; 1.90A {Syntrophus aciditrophicus}
Probab=23.89 E-value=20 Score=24.95 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=18.8
Q ss_pred cccccCCcccccCCeEEeeCCeeecHHhHHhh
Q psy12215 76 FACQQCNHRFCVGDRFYLCDNKILCEYDYEER 107 (155)
Q Consensus 76 f~C~~C~~~l~~~~~~~~~~~~~~C~~c~~~~ 107 (155)
..|..|+...... |+.+|..|+.+.
T Consensus 164 ~~C~~CGE~~~~~-------g~~~C~~C~~~~ 188 (191)
T 3d00_A 164 VLCPQCREAYPAQ-------DGELCLSCQGGS 188 (191)
T ss_dssp EECTTTCCEEEGG-------GCSSCHHHHTTC
T ss_pred EECCcCCCChhhC-------CCcCCccccCCC
Confidence 4588888877222 889999998654
No 187
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.14 E-value=22 Score=20.66 Aligned_cols=11 Identities=18% Similarity=0.691 Sum_probs=6.5
Q ss_pred ccccccccccc
Q psy12215 49 YCAACTKVIPA 59 (155)
Q Consensus 49 ~C~~C~~~I~~ 59 (155)
.|+.|...|.+
T Consensus 17 ~C~IC~~~i~~ 27 (74)
T 2ct0_A 17 ICNICHSLLIQ 27 (74)
T ss_dssp BCSSSCCBCSS
T ss_pred cCcchhhHccc
Confidence 46666666654
No 188
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=23.10 E-value=22 Score=14.77 Aligned_cols=10 Identities=40% Similarity=0.899 Sum_probs=5.9
Q ss_pred cccccCCccc
Q psy12215 11 LKCGCCDCRL 20 (155)
Q Consensus 11 f~C~~C~~~l 20 (155)
|.|..|++.+
T Consensus 3 ~~C~~C~k~f 12 (29)
T 2m0f_A 3 LKCRECGKQF 12 (29)
T ss_dssp EECTTTSCEE
T ss_pred ccCCCCCCcc
Confidence 4566666554
No 189
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=22.85 E-value=29 Score=19.95 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=16.2
Q ss_pred cccccCCcccccCCCeEEEeCCeeecccch
Q psy12215 11 LKCGCCDCRLGEVGSTLYQKANLILCKRDY 40 (155)
Q Consensus 11 f~C~~C~~~l~~~~~~~~~~~~~~~C~~c~ 40 (155)
+.|-.|+.+|. +...++.++|..|-
T Consensus 9 L~CP~ck~~L~-----~~~~~~~LiC~~cg 33 (69)
T 2pk7_A 9 LACPICKGPLK-----LSADKTELISKGAG 33 (69)
T ss_dssp CCCTTTCCCCE-----ECTTSSEEEETTTT
T ss_pred eeCCCCCCcCe-----EeCCCCEEEcCCCC
Confidence 56788887773 33345677777664
No 190
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=22.84 E-value=23 Score=14.75 Aligned_cols=10 Identities=30% Similarity=0.916 Sum_probs=6.6
Q ss_pred cccccCCccc
Q psy12215 11 LKCGCCDCRL 20 (155)
Q Consensus 11 f~C~~C~~~l 20 (155)
|.|..|++.+
T Consensus 4 ~~C~~C~k~f 13 (28)
T 2kvf_A 4 YSCSVCGKRF 13 (28)
T ss_dssp EECSSSCCEE
T ss_pred ccCCCCCccc
Confidence 5677776655
No 191
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=22.82 E-value=86 Score=23.06 Aligned_cols=48 Identities=6% Similarity=0.022 Sum_probs=34.3
Q ss_pred ccccccCCcccccCCeEEe-eCCeeecHHhHHhhhcccCCCeeee--cCCeec
Q psy12215 75 CFACQQCNHRFCVGDRFYL-CDNKILCEYDYEERQVFCVGDRFYL--CDNKIL 124 (155)
Q Consensus 75 Cf~C~~C~~~l~~~~~~~~-~~~~~~C~~c~~~~~~~~~~~~c~~--c~~~i~ 124 (155)
=|.|..|...+ ...+.. .-|..||+.|..+.........|.. |.+.+.
T Consensus 181 el~CPIcl~~f--~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 181 ELTCPITCKPY--EAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp CSBCTTTSSBC--SSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred eeECcCccCcc--cCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 37888998888 666765 4599999999887653222346887 877664
No 192
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=22.64 E-value=96 Score=18.97 Aligned_cols=36 Identities=19% Similarity=0.430 Sum_probs=22.3
Q ss_pred cccccccccccCCc-ccccCCeEEee--CCeeecHHhHHhh
Q psy12215 70 VYHLECFACQQCNH-RFCVGDRFYLC--DNKILCEYDYEER 107 (155)
Q Consensus 70 ~~H~~Cf~C~~C~~-~l~~~~~~~~~--~~~~~C~~c~~~~ 107 (155)
.+|+. ..|..|+. ++ .+.+|.-. .+--+|..||...
T Consensus 27 ~~H~g-v~Cd~C~~~pI-~G~RykC~~C~d~DLC~~C~~~~ 65 (98)
T 2dip_A 27 DKHLG-IPCNNCKQFPI-EGKCYKCTECIEYHLCQECFDSY 65 (98)
T ss_dssp SSCCC-CCCSSSCCSSC-CSCEEEESSSSSCEEEHHHHHTT
T ss_pred cccCC-CCCcCCCCCCc-ccCeEECCCCCCccHHHHHHccC
Confidence 35554 66777775 45 56665543 2456888888753
No 193
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=22.54 E-value=28 Score=14.52 Aligned_cols=10 Identities=30% Similarity=0.916 Sum_probs=6.4
Q ss_pred cccccCCccc
Q psy12215 11 LKCGCCDCRL 20 (155)
Q Consensus 11 f~C~~C~~~l 20 (155)
|.|..|++.+
T Consensus 3 ~~C~~C~k~f 12 (30)
T 1klr_A 3 YQCQYCEFRS 12 (30)
T ss_dssp CCCSSSSCCC
T ss_pred ccCCCCCCcc
Confidence 5666676665
No 194
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=22.37 E-value=28 Score=14.38 Aligned_cols=10 Identities=40% Similarity=0.933 Sum_probs=6.0
Q ss_pred cccccCCccc
Q psy12215 11 LKCGCCDCRL 20 (155)
Q Consensus 11 f~C~~C~~~l 20 (155)
|.|..|++.+
T Consensus 3 ~~C~~C~~~f 12 (29)
T 2m0e_A 3 HKCPHCDKKF 12 (29)
T ss_dssp CCCSSCCCCC
T ss_pred CcCCCCCccc
Confidence 4566666655
No 195
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=22.06 E-value=28 Score=25.01 Aligned_cols=27 Identities=19% Similarity=0.364 Sum_probs=13.4
Q ss_pred cccccccccccCceEEeccCcccccccc
Q psy12215 49 YCAACTKVIPAFEMVMRAKNNVYHLECF 76 (155)
Q Consensus 49 ~C~~C~~~I~~~~~~~~~~~~~~H~~Cf 76 (155)
.|..|...|..+..-.. -+..||..|+
T Consensus 182 ~C~iC~~iv~~g~~C~~-C~~~~H~~C~ 208 (238)
T 3nw0_A 182 ICNICHSLLIQGQSCET-CGIRMHLPCV 208 (238)
T ss_dssp BCTTTCSBCSSCEECSS-SCCEECHHHH
T ss_pred cCcchhhHHhCCcccCc-cChHHHHHHH
Confidence 57777777754221111 2344555554
No 196
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=21.44 E-value=26 Score=14.63 Aligned_cols=10 Identities=30% Similarity=0.773 Sum_probs=6.2
Q ss_pred cccccCCccc
Q psy12215 11 LKCGCCDCRL 20 (155)
Q Consensus 11 f~C~~C~~~l 20 (155)
|.|..|++.+
T Consensus 3 ~~C~~C~k~f 12 (29)
T 1rik_A 3 FACPECPKRF 12 (29)
T ss_dssp EECSSSSCEE
T ss_pred ccCCCCCchh
Confidence 5566666655
No 197
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=21.35 E-value=23 Score=14.84 Aligned_cols=10 Identities=20% Similarity=0.677 Sum_probs=6.6
Q ss_pred cccccCCccc
Q psy12215 11 LKCGCCDCRL 20 (155)
Q Consensus 11 f~C~~C~~~l 20 (155)
|.|..|++.+
T Consensus 4 ~~C~~C~k~f 13 (27)
T 2kvg_A 4 YRCPLCRAGC 13 (27)
T ss_dssp EEETTTTEEE
T ss_pred cCCCCCCccc
Confidence 5677776655
No 198
>1fyb_A Na-propi, proteinase inhibitor; two-domain protein, hydrolase inhibitor; NMR {Nicotiana alata} SCOP: g.69.1.1 g.69.1.1 PDB: 2jyy_A 1ytp_A
Probab=20.76 E-value=1.7e+02 Score=18.42 Aligned_cols=83 Identities=17% Similarity=0.369 Sum_probs=47.7
Q ss_pred cccCCcccccCCCeEEEeCCeeecccchhccccccccccc-cccccccCceEEeccCccccccccccccCCcccccCCeE
Q psy12215 13 CGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAA-CTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRF 91 (155)
Q Consensus 13 C~~C~~~l~~~~~~~~~~~~~~~C~~c~~~~~~~~~~C~~-C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~ 91 (155)
|+.|-.-- .+-.||+.+|...|+.=...+-+. .|.. |...|.- ..-.+..++..-+.|-.|.. .- .+-.+
T Consensus 4 ctnccag~--kgc~y~s~~gtficeGeSdp~npK--aCp~~CdprIaY-~~CP~Se~kk~~~iCtNCCA---G~-KGC~y 74 (111)
T 1fyb_A 4 CTNCCAGT--KGCKYFSDDGTFVCEGESDPRNPK--ACTLNCDPRIAY-GVCPRSEEKKNDRICTNCCA---GT-KGCKY 74 (111)
T ss_dssp CCCSSSSC--TTSEEEETTTEECCCCSSCTTSCC--CCCCCCCTTEEE-EECCCSCSSSSSSSCCCSSS---SC-TTSEE
T ss_pred cccccCCC--CccceEcCCccEEeCCccCCCCCC--cCccccCCccce-eECCcccccccccccchhcc---cc-ccceE
Confidence 44444433 567899999999997444333222 4654 6655532 12233445555555655432 22 46678
Q ss_pred EeeCCeeecHHhH
Q psy12215 92 YLCDNKILCEYDY 104 (155)
Q Consensus 92 ~~~~~~~~C~~c~ 104 (155)
+..||...|+.-.
T Consensus 75 fsaDGtfiCeGEs 87 (111)
T 1fyb_A 75 FSDDGTFVCEGES 87 (111)
T ss_dssp EETTTEEEEECCC
T ss_pred ECCCCcEEecCCC
Confidence 8888888885443
No 199
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=26.19 E-value=21 Score=15.09 Aligned_cols=11 Identities=18% Similarity=0.552 Sum_probs=7.1
Q ss_pred cccccCCcccc
Q psy12215 11 LKCGCCDCRLG 21 (155)
Q Consensus 11 f~C~~C~~~l~ 21 (155)
|.|..|++.+.
T Consensus 4 ~~C~~C~k~f~ 14 (30)
T 2lvr_A 4 YVCIHCQRQFA 14 (30)
Confidence 56777776653
No 200
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=20.68 E-value=82 Score=18.50 Aligned_cols=47 Identities=13% Similarity=0.229 Sum_probs=27.6
Q ss_pred cccccCCcccccCCeEEeeC-CeeecHHhHHhhhcc----c--CCCeeee--cCCe
Q psy12215 76 FACQQCNHRFCVGDRFYLCD-NKILCEYDYEERQVF----C--VGDRFYL--CDNK 122 (155)
Q Consensus 76 f~C~~C~~~l~~~~~~~~~~-~~~~C~~c~~~~~~~----~--~~~~c~~--c~~~ 122 (155)
+.|.+|-..+.....+.... |..||..|....... . ....|.. |...
T Consensus 6 ~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 6 SGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp CCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred cCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 56777777663233333333 899999997654311 1 1246766 7766
No 201
>2k0a_A PRE-mRNA-splicing factor RDS3; zinc finger, topological knot, mRNA processing, nucleus, spliceosome, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=20.58 E-value=42 Score=21.03 Aligned_cols=58 Identities=19% Similarity=0.352 Sum_probs=34.1
Q ss_pred eecccchhccccccccccccccccccCceEEeccCccccccccccccCCcccccCCeEEeeCCeeecHHhHH
Q psy12215 34 ILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105 (155)
Q Consensus 34 ~~C~~c~~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~c~~ 105 (155)
.+|+.|-- +|..|...+.+...+-.-..-.|-..--+|..|+...+. ....||..|-.
T Consensus 23 ~lCekcdG-------kC~iCDs~Vrp~~~VrICdeCs~G~~~~rCIiCg~~~g~-------~dAYYC~eC~~ 80 (109)
T 2k0a_A 23 LLCEKCDG-------KCPICDSYVRPKRKVRVCENCSFGKQAKNCIICNLNVGV-------NDAFYCWECCR 80 (109)
T ss_dssp EECGGGTT-------CCTTTCCCCCCCEECEEEHHHHTSSTTSBCTTTSSSBCC-------EECEECHHHHH
T ss_pred hhhhhcCC-------cccccCCccCCcceEEECCcCCCCCcCCceEEcCCCCCc-------ccceehHhhhh
Confidence 35777632 799999888774433223333343334567777755522 22678988864
No 202
>2ebq_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.56 E-value=43 Score=17.73 Aligned_cols=30 Identities=17% Similarity=0.206 Sum_probs=21.7
Q ss_pred eCCeeecccchhcccccccccccccccccc
Q psy12215 30 KANLILCKRDYLRLFGTTGYCAACTKVIPA 59 (155)
Q Consensus 30 ~~~~~~C~~c~~~~~~~~~~C~~C~~~I~~ 59 (155)
.+|.--|..|+..+.+...+|..|..+=.+
T Consensus 8 ~~g~W~C~~C~v~N~a~~~kC~aCetpKpg 37 (47)
T 2ebq_A 8 VIGTWDCDTCLVQNKPEAIKCVACETPKPG 37 (47)
T ss_dssp CSSSEECSSSCCEECSSCSBCSSSCCBCSC
T ss_pred CCCceECCeeeccCccCCceecCcCCCCCC
Confidence 345566888888887666689888876543
No 203
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.07 E-value=1.2e+02 Score=17.19 Aligned_cols=19 Identities=26% Similarity=0.793 Sum_probs=11.2
Q ss_pred cCcccccccc--------ccccCCccc
Q psy12215 67 KNNVYHLECF--------ACQQCNHRF 85 (155)
Q Consensus 67 ~~~~~H~~Cf--------~C~~C~~~l 85 (155)
-+..||..|+ .|-.|...+
T Consensus 48 C~H~FH~~Ci~~Wl~~~~~CP~CR~~~ 74 (81)
T 2ecl_A 48 CNHSFHNCCMSLWVKQNNRCPLCQQDW 74 (81)
T ss_dssp TSCEEEHHHHHHHTTTCCBCTTTCCBC
T ss_pred CCCccChHHHHHHHHhCCCCCCcCCCc
Confidence 4566666664 366666665
Done!