RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12215
(155 letters)
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene,
transcription, developmental protein; 2.40A {Homo
sapiens} PDB: 2xjz_A
Length = 131
Score = 133 bits (336), Expect = 4e-41
Identities = 63/106 (59%), Positives = 73/106 (68%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WHEDCL C C CRLGEVG LY K LC+RDYLRLFG G CA+C K I A+
Sbjct: 20 AIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAY 79
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
EM MR K+ VYHLECF C C FCVGDR+ L ++ I+CE D E
Sbjct: 80 EMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYE 125
Score = 50.5 bits (121), Expect = 6e-09
Identities = 29/122 (23%), Positives = 42/122 (34%), Gaps = 41/122 (33%)
Query: 50 CAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFC-VGDRFYLCDNKILCEYDYEER- 107
C C + I ++A + +H +C +C C R VG R Y + LC DY
Sbjct: 5 CGGCQQNIGD-RYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLF 63
Query: 108 --------------------------------------QVFCVGDRFYLCDNKILCEYDY 129
+ FCVGDR+ L ++ I+CE D
Sbjct: 64 GQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDI 123
Query: 130 EE 131
E
Sbjct: 124 YE 125
Score = 34.3 bits (79), Expect = 0.005
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTG 48
D +H +C KC C G + I+C++D G
Sbjct: 85 VKDKVYHLECFKCAACQKHFCV-GDRYLLINSDIVCEQDIYEWTKING 131
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding
protein 1; B-tandem zipper, protein binding; 1.30A {Mus
musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB:
2dfy_X 2xjz_I 2xjy_B
Length = 188
Score = 127 bits (320), Expect = 4e-38
Identities = 52/107 (48%), Positives = 74/107 (69%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WH CLKC C +LG++G++ Y K+ +ILC+ DY+RLFG +G C+AC + IPA
Sbjct: 23 AMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPAS 82
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEER 107
E+VMRA+ NVYHL+CF C C +R GDRF+ + + CE+D
Sbjct: 83 ELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDRPTA 129
Score = 50.0 bits (119), Expect = 2e-08
Identities = 25/135 (18%), Positives = 39/135 (28%), Gaps = 41/135 (30%)
Query: 50 CAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFC-VGDRFYLCDNKILCEYDYEE-- 106
CA C I ++ A ++ +H C C C + +G Y ILC DY
Sbjct: 8 CAGCGGKIAD-RFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLF 66
Query: 107 -------------------------------------RQVFCVGDRFYLCDNKILCEYDY 129
R GDRF+ + + CE+D
Sbjct: 67 GNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDR 126
Query: 130 EERQVFANIAYNPSS 144
+ ++ S
Sbjct: 127 PTALINGHLNSGGSG 141
Score = 36.5 bits (84), Expect = 0.001
Identities = 10/64 (15%), Positives = 15/64 (23%), Gaps = 3/64 (4%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A +H C C C RL G + + C+ D +
Sbjct: 88 AQGNVYHLKCFTCSTCRNRLVP-GDRFHYINGSLFCEHDRPTALING--HLNSGGSGGSG 144
Query: 61 EMVM 64
Sbjct: 145 GSGG 148
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3;
intramolecular (fusion) protein-protein complex, protein
binding/transcription complex; NMR {Mus musculus}
Length = 182
Score = 120 bits (301), Expect = 3e-35
Identities = 46/108 (42%), Positives = 61/108 (56%), Gaps = 6/108 (5%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD WH CLKC C L E + + + CK D+ + FGT CAAC IP
Sbjct: 78 ALDRHWHSKCLKCSDCHVPLAE---RCFSRGESVYCKDDFFKRFGTK--CAACQLGIPPT 132
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYEER 107
++V RA++ VYHL CFAC C + GD FYL D++++C+ DYE
Sbjct: 133 QVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETA 180
Score = 50.7 bits (121), Expect = 1e-08
Identities = 23/156 (14%), Positives = 48/156 (30%), Gaps = 43/156 (27%)
Query: 15 CCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLE 74
+ + + + + CA C + I +++A + +H +
Sbjct: 30 RLENTQFDAANGIDDEGGSGGHMGSGGTPEIPM--CAGCDQHILD-RFILKALDRHWHSK 86
Query: 75 CFACQQCNHRFCVGDRFYLCDNKILCEYDYEER--------------------------- 107
C C C+ +R + + C+ D+ +R
Sbjct: 87 CLKCSDCHVPL--AERCFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYH 144
Query: 108 ----------QVFCVGDRFYLC-DNKILCEYDYEER 132
+ GD FYL D++++C+ DYE
Sbjct: 145 LHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETA 180
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein
ISL-1; protein-protein complex, LIM domain, Zn finger,
activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Length = 169
Score = 113 bits (283), Expect = 1e-32
Identities = 46/108 (42%), Positives = 61/108 (56%), Gaps = 6/108 (5%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
ALD WH CLKC C L E + + + CK D+ + FGT CAAC IP
Sbjct: 24 ALDRHWHSKCLKCSDCHVPLAE---RCFSRGESVYCKDDFFKRFGTK--CAACQLGIPPT 78
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC-DNKILCEYDYEER 107
++V RA++ VYHL CFAC C + GD FYL D++++C+ DYE
Sbjct: 79 QVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETA 126
Score = 51.8 bits (124), Expect = 4e-09
Identities = 14/84 (16%), Positives = 22/84 (26%), Gaps = 4/84 (4%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A D +H C C C +L + + ++CK DY
Sbjct: 84 AQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQGG--SGGSGGSGG-- 139
Query: 61 EMVMRAKNNVYHLECFACQQCNHR 84
M A + H +
Sbjct: 140 GTPMVAASPERHDGGLQANPVEVQ 163
Score = 46.4 bits (110), Expect = 3e-07
Identities = 23/121 (19%), Positives = 43/121 (35%), Gaps = 41/121 (33%)
Query: 50 CAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEER-- 107
CA C + I +++A + +H +C C C+ +R + + C+ D+ +R
Sbjct: 9 CAGCDQHILD-RFILKALDRHWHSKCLKCSDCHVPL--AERCFSRGESVYCKDDFFKRFG 65
Query: 108 -----------------------------------QVFCVGDRFYLC-DNKILCEYDYEE 131
+ GD FYL D++++C+ DYE
Sbjct: 66 TKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYET 125
Query: 132 R 132
Sbjct: 126 A 126
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1;
LMO2(LIM2)-LDB1(LID), chimera, fusion protein,
oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Length = 123
Score = 95.1 bits (236), Expect = 3e-26
Identities = 38/72 (52%), Positives = 45/72 (62%)
Query: 40 YLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKIL 99
YLRLFG G CA+C K I A+EM MR K+ VYHLECF C C F VGDR+ L ++ I+
Sbjct: 1 YLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIV 60
Query: 100 CEYDYEERQVFC 111
CE D E
Sbjct: 61 CEQDIYEWTKIN 72
Score = 40.8 bits (95), Expect = 2e-05
Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 1/53 (1%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAAC 53
D +H +C KC C VG + I+C++D G
Sbjct: 27 VKDKVYHLECFKCAACQKHF-SVGDRYLLINSDIVCEQDIYEWTKINGGSGGS 78
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion,
acrosom; 2.62A {Homo sapiens}
Length = 126
Score = 82.8 bits (205), Expect = 2e-21
Identities = 25/109 (22%), Positives = 40/109 (36%), Gaps = 7/109 (6%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A + WH C CD L G + +CK Y++ C C I
Sbjct: 21 AENQNWHLKHFCCFDCDSILA--GEIYVMVNDKPVCKPCYVKNHAV--VCQGCHNAIDPE 76
Query: 61 EMVMRAKNNVYHL--ECFACQQCNHRFCVGDRFYLCDNKILCEYDYEER 107
+ N +H ECF C C+ +G +F + + C + ++R
Sbjct: 77 VQRVTYNNFSWHASTECFLCSCCSKCL-IGQKFMPVEGMVFCSVECKKR 124
Score = 44.7 bits (106), Expect = 6e-07
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 50 CAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEER 107
CA C ++I + +A+N +HL+ F C C+ G+ + + ++K +C+ Y +
Sbjct: 6 CAGCDELIFS-NEYTQAENQNWHLKHFCCFDCDSIL-AGEIYVMVNDKPVCKPCYVKN 61
Score = 28.9 bits (65), Expect = 0.36
Identities = 9/46 (19%), Positives = 15/46 (32%), Gaps = 4/46 (8%)
Query: 1 ALDLFWH--EDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLF 44
+ WH +C C CC L G ++ C + +
Sbjct: 82 YNNFSWHASTECFLCSCCSKCLI--GQKFMPVEGMVFCSVECKKRM 125
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1,
LIM domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Length = 101
Score = 80.1 bits (198), Expect = 1e-20
Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 4/81 (4%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+ FWH+ C +C C L T K N ILC + R C C K I A
Sbjct: 24 YKNRFWHDTCFRCAKCLHPLA--NETFVAKDNKILCNKCTTREDSPK--CKGCFKAIVAG 79
Query: 61 EMVMRAKNNVYHLECFACQQC 81
+ + K V+H +CF+
Sbjct: 80 DQNVEYKGTVWHKDCFSGPSS 100
Score = 47.0 bits (112), Expect = 6e-08
Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 50 CAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEER 107
C C K I A + KN +H CF C +C H + F DNKILC
Sbjct: 8 CVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPL-ANETFVAKDNKILCNKCTTRE 64
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1;
LIM-interaction-domain (LID), metal binding protein; NMR
{Mus musculus} SCOP: g.39.1.3 g.39.1.3
Length = 114
Score = 75.1 bits (184), Expect = 1e-18
Identities = 35/85 (41%), Positives = 45/85 (52%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WHEDCL C C CRLGEVG LY K LC+RDYLRL G+ G+ + V+
Sbjct: 21 AIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSGGHMGSGGDVMVVG 80
Query: 61 EMVMRAKNNVYHLECFACQQCNHRF 85
E + E + N +F
Sbjct: 81 EPTLMGGEFGDEDERLITRLENTQF 105
Score = 42.7 bits (100), Expect = 4e-06
Identities = 21/105 (20%), Positives = 36/105 (34%), Gaps = 19/105 (18%)
Query: 45 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFC-VGDRFYLCDNKILCEYD 103
G+ C C + I ++A + +H +C +C C R VG R Y + LC D
Sbjct: 1 GSLLTCGGCQQNIGD-RYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRD 59
Query: 104 YEERQVFC-----------------VGDRFYLCDNKILCEYDYEE 131
Y +G F D +++ + +
Sbjct: 60 YLRLGGSGGHMGSGGDVMVVGEPTLMGGEFGDEDERLITRLENTQ 104
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the
N-terminal LIM domain of LMO4...; fusion protein, LMO
proteins, metal binding protein; NMR {Mus musculus}
SCOP: g.39.1.3 g.39.1.3
Length = 122
Score = 75.4 bits (185), Expect = 1e-18
Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 16/106 (15%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
A+D +WH CLKC C +LG++G++ Y K+ +ILC+ DY+RLFG +G + +
Sbjct: 23 AMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGG 82
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
++++ +G F D +++ + +
Sbjct: 83 DVMV----------------VGEPTLMGGEFGDEDERLITRLENTQ 112
Score = 52.3 bits (125), Expect = 1e-09
Identities = 19/106 (17%), Positives = 33/106 (31%), Gaps = 25/106 (23%)
Query: 50 CAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFC-VGDRFYLCDNKILCEYDYEER- 107
CA C I ++ A ++ +H C C C + +G Y ILC DY
Sbjct: 8 CAGCGGKIAD-RFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLF 66
Query: 108 ----------------------QVFCVGDRFYLCDNKILCEYDYEE 131
+ +G F D +++ + +
Sbjct: 67 GNSGAGGSGGHMGSGGDVMVVGEPTLMGGEFGDEDERLITRLENTQ 112
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 81
Score = 65.6 bits (160), Expect = 3e-15
Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 5/77 (6%)
Query: 32 NLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRF 91
+ +DY FG C C+ ++ M A YH ECFAC C GD +
Sbjct: 2 SSGSSGKDYWGKFGEF--CHGCSLLMT--GPFMVAGEFKYHPECFACMSCKVIIEDGDAY 57
Query: 92 YLCDN-KILCEYDYEER 107
L + + C + E
Sbjct: 58 ALVQHATLYCGKCHNEV 74
Score = 32.1 bits (73), Expect = 0.016
Identities = 6/46 (13%), Positives = 17/46 (36%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGT 46
A + +H +C C C + + + + + C + + +
Sbjct: 32 AGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVSG 77
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain,
ablim2, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: g.39.1.3 g.39.1.3
Length = 81
Score = 62.5 bits (152), Expect = 4e-14
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Query: 39 DYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKI 98
DY RL+GT C +C + I V+ A YH +CF C C F GDR +
Sbjct: 9 DYQRLYGTR--CFSCDQFIE--GEVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKEC 64
Query: 99 LCEYDYEE 106
+C+
Sbjct: 65 MCQKCSLP 72
Score = 29.8 bits (67), Expect = 0.099
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 45
AL +H DC C C G + +C++ L +
Sbjct: 32 ALGKTYHPDCFVCAVCRLPFPP-GDRVTFNGKECMCQKCSLPVSV 75
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4;
protein-protein interaction, LIM-interaction DOM LMO4,
RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo
sapiens}
Length = 123
Score = 63.2 bits (153), Expect = 7e-14
Identities = 23/45 (51%), Positives = 34/45 (75%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 45
A+D +WH CLKC C +LG++G++ Y K+ +ILC+ DY+RLFG
Sbjct: 79 AMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 123
Score = 47.4 bits (112), Expect = 6e-08
Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 50 CAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFC-VGDRFYLCDNKILCEYDYEER 107
CA C I ++ A ++ +H C C C + +G Y ILC DY
Sbjct: 64 CAGCGGKIAD-RFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRL 121
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting
protein 1, zyxin related protein 1 (ZRP-1), structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 61.7 bits (150), Expect = 9e-14
Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 1/68 (1%)
Query: 46 TTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYE 105
+ C C + + + A + V+H+ CF C C + G FY + + CE Y
Sbjct: 4 GSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLR-GQHFYAVERRAYCEGCYV 62
Query: 106 ERQVFCVG 113
Sbjct: 63 ATLESGPS 70
Score = 37.4 bits (87), Expect = 1e-04
Identities = 12/51 (23%), Positives = 17/51 (33%), Gaps = 2/51 (3%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCA 51
ALD +H C C C +L G Y C+ Y+ +
Sbjct: 24 ALDRVFHVGCFVCSTCRAQLR--GQHFYAVERRAYCEGCYVATLESGPSSG 72
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM
domains protein 1, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 82
Score = 57.0 bits (138), Expect = 7e-12
Identities = 16/72 (22%), Positives = 24/72 (33%), Gaps = 3/72 (4%)
Query: 36 CKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD 95
+ R C C K I A + + K V+H +CF C C F+
Sbjct: 6 SGKCTTREDSPK--CKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVI-GTGSFFPKG 62
Query: 96 NKILCEYDYEER 107
C +E +
Sbjct: 63 EDFYCVTCHETK 74
Score = 37.7 bits (88), Expect = 1e-04
Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 4/52 (7%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAA 52
WH+DC C C +G + + K C + F + ++
Sbjct: 34 YKGTVWHKDCFTCSNCKQVIG--TGSFFPKGEDFYCVTCHETKFASG--PSS 81
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1;
ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK,
IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Length = 72
Score = 56.6 bits (137), Expect = 8e-12
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 47 TGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
+ C C E ++ + +YH +CF C QC +F FY + + CE+D++
Sbjct: 11 SATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFP-EGLFYEFEGRKYCEHDFQM 69
Score = 35.8 bits (83), Expect = 6e-04
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 45
+ +HE C C C + Y+ C+ D+ LF
Sbjct: 30 SNGELYHEQCFVCAQCFQQFP--EGLFYEFEGRKYCEHDFQMLFA 72
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 77
Score = 55.5 bits (134), Expect = 2e-11
Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Query: 35 LCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLC 94
+ + L + C C E ++ + +YH +CF C QC +F FY
Sbjct: 1 ISEFMANALA--SATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQF-PEGLFYEF 57
Query: 95 DNKILCEYDYEE 106
+ + CE+D++
Sbjct: 58 EGRKYCEHDFQM 69
Score = 35.5 bits (82), Expect = 8e-04
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 45
+ +HE C C C + Y+ C+ D+ LF
Sbjct: 30 SNGELYHEQCFVCAQCFQQFP--EGLFYEFEGRKYCEHDFQMLFA 72
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 53.6 bits (129), Expect = 1e-10
Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 50 CAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEER 107
C C K I M K + +H CF C +C F DN+ C YE++
Sbjct: 8 CQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPI-GTKSFIPKDNQNFCVPCYEKQ 64
Score = 37.0 bits (86), Expect = 2e-04
Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 4/52 (7%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAA 52
WHE C C C +G + K N C Y + + ++
Sbjct: 24 YKGSSWHETCFICHRCQQPIG--TKSFIPKDNQNFCVPCYEKQHASG--PSS 71
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 80
Score = 53.5 bits (129), Expect = 1e-10
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
Query: 36 CKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD 95
+D+L +F C C + + E + A + V+H ECF C C F F+ D
Sbjct: 6 SGKDFLAMFSPK--CGGCNRPV--LENYLSAMDTVWHPECFVCGDCFTSF-STGSFFELD 60
Query: 96 NKILCEYDYEER 107
+ CE Y R
Sbjct: 61 GRPFCELHYHHR 72
Score = 35.0 bits (81), Expect = 0.001
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGT 46
A+D WH +C CG C + ++ C+ Y G+
Sbjct: 32 AMDTVWHPECFVCGDCFTSFS--TGSFFELDGRPFCELHYHHRRGS 75
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 80
Score = 52.3 bits (126), Expect = 4e-10
Identities = 16/72 (22%), Positives = 25/72 (34%), Gaps = 5/72 (6%)
Query: 36 CKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD 95
Y F CA C+K + + + ++ +H EC C C G +F D
Sbjct: 6 SGPCYENKFAPR--CARCSKTL--TQGGVTYRDQPWHRECLVCTGCQTPL-AGQQFTSRD 60
Query: 96 NKILCEYDYEER 107
C + E
Sbjct: 61 EDPYCVACFGEL 72
Score = 36.2 bits (84), Expect = 5e-04
Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 4/52 (7%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAA 52
D WH +CL C C L G + C + LF + ++
Sbjct: 32 YRDQPWHRECLVCTGCQTPLA--GQQFTSRDEDPYCVACFGELFAS--GPSS 79
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken
structural genomics/proteomics initiative, RSGI, NPPSFA;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 72
Score = 51.6 bits (124), Expect = 5e-10
Identities = 12/58 (20%), Positives = 18/58 (31%), Gaps = 1/58 (1%)
Query: 50 CAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEER 107
C+AC + + + +H CF C C F C YE +
Sbjct: 8 CSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPL-GSRSFVPDKGAHYCVPCYENK 64
Score = 38.1 bits (89), Expect = 7e-05
Identities = 11/52 (21%), Positives = 16/52 (30%), Gaps = 4/52 (7%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAA 52
WHE C C C+ LG + C Y F + ++
Sbjct: 24 YGGQTWHEHCFLCSGCEQPLG--SRSFVPDKGAHYCVPCYENKFASG--PSS 71
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1,
skeletal muscle LIM- protein 1, SLIM 1, structural
genomics NPPSFA; NMR {Homo sapiens}
Length = 77
Score = 51.3 bits (123), Expect = 8e-10
Identities = 15/76 (19%), Positives = 25/76 (32%), Gaps = 6/76 (7%)
Query: 34 ILCKRDYLRLFGTTGYCAACTKVIPAF---EMVMRAKNNVYHLECFACQQCNHRFCVGDR 90
Y CA C I F V+ + +H CF C++C+ R
Sbjct: 4 GSSGDCYKNFVAKK--CAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNL-ANKR 60
Query: 91 FYLCDNKILCEYDYEE 106
F ++ C ++
Sbjct: 61 FVFHQEQVYCPDCAKK 76
Score = 30.1 bits (68), Expect = 0.068
Identities = 8/43 (18%), Positives = 11/43 (25%), Gaps = 2/43 (4%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRL 43
WH+ C C C L + C +L
Sbjct: 37 YEGQSWHDYCFHCKKCSVNLA--NKRFVFHQEQVYCPDCAKKL 77
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein
2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 82
Score = 51.0 bits (122), Expect = 1e-09
Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
Query: 36 CKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCD 95
Y F T CA C ++I + ++ +H CF C +C + F D
Sbjct: 6 SGPCYDNTFANT--CAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSL-ADEPFTCQD 62
Query: 96 NKILCEYDYEER 107
+++LC Y
Sbjct: 63 SELLCNDCYCSA 74
Score = 36.7 bits (85), Expect = 3e-04
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 4/52 (7%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAA 52
D +HE C +C C L + + +LC Y F + ++
Sbjct: 34 YEDRHFHEGCFRCCRCQRSL--ADEPFTCQDSELLCNDCYCSAFSS--GPSS 81
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 90
Score = 49.7 bits (119), Expect = 4e-09
Identities = 18/83 (21%), Positives = 27/83 (32%), Gaps = 4/83 (4%)
Query: 25 STLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHR 84
+ + L+ T CA C +VI + A +H E F C C +
Sbjct: 4 GSSGDQDTLVQRAEHIPAG-KRTPMCAHCNQVI--RGPFLVALGKSWHPEEFNCAHCKNT 60
Query: 85 FCVGDRFYLCDNKILCEYDYEER 107
F + CE YE+
Sbjct: 61 M-AYIGFVEEKGALYCELCYEKF 82
Score = 37.0 bits (86), Expect = 3e-04
Identities = 10/52 (19%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAA 52
AL WH + C C + +G ++ + C+ Y + F + ++
Sbjct: 42 ALGKSWHPEEFNCAHCKNTMAYIGF--VEEKGALYCELCYEKFFASG--PSS 89
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 80
Score = 49.4 bits (118), Expect = 6e-09
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAA 52
ALD WH C KC C L K + C+ DY FG+ ++
Sbjct: 33 ALDKQWHVSCFKCQTCSVILTG---EYISKDGVPYCESDYHAQFGSG--PSS 79
Score = 42.8 bits (101), Expect = 2e-06
Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 50 CAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEER 107
CA C + I + A + +H+ CF CQ C+ + D CE DY +
Sbjct: 18 CAGCKEEI-KHGQSLLALDKQWHVSCFKCQTCSVIL--TGEYISKDGVPYCESDYHAQ 72
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 70
Score = 48.6 bits (116), Expect = 9e-09
Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 50 CAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEER 107
C C + I V++A NN +H ECF C C F + LC +
Sbjct: 8 CHQCGEFI--IGRVIKAMNNSWHPECFRCDLCQEVL-ADIGFVKNAGRHLCRPCHNRE 62
Score = 35.5 bits (82), Expect = 6e-04
Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYC 50
A++ WH +C +C C L ++G + A LC+ + R +
Sbjct: 22 AMNNSWHPECFRCDLCQEVLADIG--FVKNAGRHLCRPCHNREKASGPSS 69
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM
domain 3, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: g.39.1.3 g.39.1.3
Length = 89
Score = 48.6 bits (116), Expect = 1e-08
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 50 CAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEER 107
C C I V++A++ H ECF C CN ++ + ++ CE R
Sbjct: 28 CDKCGSGI--VGAVVKARDKYRHPECFVCADCNLNL-KQKGYFFVEGELYCETHARAR 82
Score = 39.0 bits (91), Expect = 6e-05
Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 2/46 (4%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGT 46
A D + H +C C C+ L + G + + C+
Sbjct: 42 ARDKYRHPECFVCADCNLNLKQKGY--FFVEGELYCETHARARTSG 85
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3,
LIM-domain protein DRAL, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 70
Score = 46.6 bits (111), Expect = 5e-08
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 3/61 (4%)
Query: 47 TGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
+ C C K I + + +H ECF C C + G RF D+ C + +
Sbjct: 5 SSGCVQCKKPI--TTGGVTYREQPWHKECFVCTACRKQL-SGQRFTARDDFAYCLNCFCD 61
Query: 107 R 107
Sbjct: 62 L 62
Score = 38.1 bits (89), Expect = 8e-05
Identities = 9/52 (17%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAA 52
+ WH++C C C +L G + + C + L+ + ++
Sbjct: 22 YREQPWHKECFVCTACRKQLS--GQRFTARDDFAYCLNCFCDLYAS--GPSS 69
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Length = 66
Score = 46.5 bits (111), Expect = 5e-08
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 50 CAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEER 107
C AC + I V+ A +H+E F C +C F G R Y CE Y +
Sbjct: 8 CGACRRPI--EGRVVNAMGKQWHVEHFVCAKCEKPFL-GHRHYERKGLAYCETHYNQL 62
Score = 36.9 bits (86), Expect = 2e-04
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGT 46
A+ WH + C C+ G Y++ L C+ Y +LFG
Sbjct: 22 AMGKQWHVEHFVCAKCEKPFL--GHRHYERKGLAYCETHYNQLFGD 65
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein
1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 69
Score = 46.2 bits (110), Expect = 5e-08
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 50 CAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEER 107
C C K I + ++ +H +CF C C+ + G RF +++ C Y+
Sbjct: 8 CVKCNKAI--TSGGITYQDQPWHADCFVCVTCSKKL-AGQRFTAVEDQYYCVDCYKNF 62
Score = 35.8 bits (83), Expect = 4e-04
Identities = 11/46 (23%), Positives = 13/46 (28%), Gaps = 2/46 (4%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGT 46
D WH DC C C +L G + C Y
Sbjct: 22 YQDQPWHADCFVCVTCSKKLA--GQRFTAVEDQYYCVDCYKNFVSG 65
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM
domain protein CLP-36, contractIle protein, structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 79
Score = 45.9 bits (109), Expect = 1e-07
Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Query: 50 CAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEER 107
C C I + ++ ++ H EC+ C C + +++I CE ER
Sbjct: 18 CDKCGTGI--VGVFVKLRDRHRHPECYVCTDCGTNL-KQKGHFFVEDQIYCEKHARER 72
Score = 37.8 bits (88), Expect = 1e-04
Identities = 9/46 (19%), Positives = 15/46 (32%), Gaps = 2/46 (4%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGT 46
D H +C C C L + G + + I C++
Sbjct: 32 LRDRHRHPECYVCTDCGTNLKQKGH--FFVEDQIYCEKHARERVSG 75
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 45.2 bits (107), Expect = 2e-07
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Query: 49 YCAACTKVIPAF--EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
CA CT I + + +H +CF C++C+ VG F + ILC ++
Sbjct: 7 GCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSL-VGRGFLTERDDILCPDCGKD 65
Query: 107 R 107
Sbjct: 66 I 66
Score = 35.6 bits (82), Expect = 8e-04
Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 45
+ WH DC C C L VG + + ILC + G
Sbjct: 26 FEERQWHNDCFNCKKCSLSL--VGRGFLTERDDILCPDCGKDISG 68
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN
actin- interacting protein, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 76
Score = 42.9 bits (101), Expect = 1e-06
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Query: 49 YCAACTKVIPAFEM--VMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
C AC+K I + +++ +H ECF C +C+ VG F + +I C+
Sbjct: 7 GCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSL-VGKGFLTQNKEIFCQKCGSG 65
Query: 107 RQVFCVG 113
G
Sbjct: 66 MDTDISG 72
Score = 31.8 bits (72), Expect = 0.019
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLF 44
D WH +C CG C L VG + I C++ +
Sbjct: 26 FQDSQWHSECFNCGKCSVSL--VGKGFLTQNKEIFCQKCGSGMD 67
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain,
OPA-interacting protein 1, zyxin related protein 1
(ZRP-1), structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 81
Score = 41.6 bits (98), Expect = 4e-06
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAA 52
A+ +H C C C L + T + I C D+ R F + ++
Sbjct: 32 AMGKAYHPGCFTCVVCHRGLDGIPFT-VDATSQIHCIEDFHRKFAS--GPSS 80
Score = 41.6 bits (98), Expect = 5e-06
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 50 CAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEER 107
CA C++ I + ++RA YH CF C C+ ++I C D+ +
Sbjct: 18 CATCSQPI--LDRILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRK 73
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 91
Score = 41.8 bits (98), Expect = 5e-06
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 44 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 103
C C K + E ++ A V+H+ CF C CN++ +G + +I C+
Sbjct: 12 APARETCVECQKTVYPMERLL-ANQQVFHISCFRCSYCNNKLSLGT-YASLHGRIYCKPH 69
Query: 104 YEE 106
+ +
Sbjct: 70 FNQ 72
Score = 39.4 bits (92), Expect = 4e-05
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTG 48
A +H C +C C+ +L T I CK + +LF + G
Sbjct: 33 ANQQVFHISCFRCSYCNNKLS--LGTYASLHGRIYCKPHFNQLFKSKG 78
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: g.39.1.3 g.39.1.3
Length = 73
Score = 40.9 bits (95), Expect = 7e-06
Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 50 CAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILC 100
C +C K I V+ A YH C C +C F G+ YL + I
Sbjct: 8 CDSCEKYIT--GRVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWH 56
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle;
NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Length = 192
Score = 42.7 bits (100), Expect = 9e-06
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 44 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 103
+G C C K + E V + + + +H CF C C + ++I C+
Sbjct: 4 WGGGKKCGVCQKAVYFAEEV-QCEGSSFHKSCFLCMVCKKNL-DSTTVAVHGDEIYCKSC 61
Query: 104 YEER 107
Y ++
Sbjct: 62 YGKK 65
Score = 39.2 bits (91), Expect = 2e-04
Identities = 13/97 (13%), Positives = 26/97 (26%), Gaps = 4/97 (4%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGYCAACTKVIPAF 60
+H+ C C C L +T+ + I CK Y + +G
Sbjct: 25 CEGSSFHKSCFLCMVCKKNL--DSTTVAVHGDEIYCKSCYGKKYGPK--GKGKGMGAGTL 80
Query: 61 EMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNK 97
+ + E + + N + +
Sbjct: 81 STDKGESLGIKYEEGQSHRPTNPNASRMAQKVGGSDG 117
Score = 38.1 bits (88), Expect = 3e-04
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGY 49
WH+ C +C C L +TL K I CK Y + FG G+
Sbjct: 133 GAGKSWHKSCFRCAKCGKSLE--STTLADKDGEIYCKGCYAKNFGPKGF 179
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding
protein, zinc finger; NMR {Coturnix japonica} SCOP:
g.39.1.3 g.39.1.3 PDB: 2o10_A
Length = 81
Score = 39.7 bits (93), Expect = 2e-05
Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGY 49
+H C C C L +T+ + CK Y + +G GY
Sbjct: 25 CDGRSFHRCCFLCMVCRKNLD--STTVAIHDAEVYCKSCYGKKYGPKGY 71
Score = 39.3 bits (92), Expect = 3e-05
Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Query: 44 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 103
+G C AC + + E V +H CF C C + D ++ C+
Sbjct: 4 WGGGNKCGACGRTVYHAEEVQ-CDGRSFHRCCFLCMVCRKNL-DSTTVAIHDAEVYCKSC 61
Query: 104 YEER 107
Y ++
Sbjct: 62 YGKK 65
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 76
Score = 38.9 bits (91), Expect = 5e-05
Identities = 14/61 (22%), Positives = 20/61 (32%), Gaps = 2/61 (3%)
Query: 44 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYD 103
G C C K + E V + +H C C++C+ G D K C
Sbjct: 6 SGMASKCPKCDKTVYFAEKVS-SLGKDWHKFCLKCERCSKTLTPG-GHAEHDGKPFCHKP 63
Query: 104 Y 104
Sbjct: 64 C 64
Score = 35.1 bits (81), Expect = 0.001
Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRD-YLRLFGTTGY 49
+L WH+ CLKC C L + C + Y LFG+
Sbjct: 27 SLGKDWHKFCLKCERCSKTLT--PGGHAEHDGKPFCHKPCYATLFGSGPS 74
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His
protein, LIM and senescent cell antigen-like domains 1,
structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 79
Score = 37.1 bits (86), Expect = 2e-04
Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 4/60 (6%)
Query: 47 TGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDYEE 106
C C +I E + KN+ YH + F C C ++ C +++
Sbjct: 15 KYICQKCHAIID--EQPLIFKNDPYHPDHFNCANCGKEL--TADARELKGELYCLPCHDK 70
Score = 27.8 bits (62), Expect = 0.57
Identities = 6/44 (13%), Positives = 13/44 (29%), Gaps = 3/44 (6%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLF 44
+ +H D C C L + + C + ++
Sbjct: 32 FKNDPYHPDHFNCANCGKELTADA---RELKGELYCLPCHDKMG 72
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein,
LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3
g.39.1.3
Length = 76
Score = 36.2 bits (84), Expect = 5e-04
Identities = 14/50 (28%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRD-YLRLFGTTGY 49
+L WH CLKC C L + C Y +FG G+
Sbjct: 18 SLGKDWHRPCLKCEKCGKTLT--SGGHAEHEGKPYCNHPCYSAMFGPKGF 65
Score = 34.2 bits (79), Expect = 0.002
Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Query: 50 CAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNKILCEYDY 104
C C K + E V + +H C C++C G + K C +
Sbjct: 3 CPKCDKEVYFAERVT-SLGKDWHRPCLKCEKCGKTLTSG-GHAEHEGKPYCNHPC 55
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains;
zinc finger protein, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 82
Score = 36.1 bits (83), Expect = 5e-04
Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 2/64 (3%)
Query: 44 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGD-RFYLCDNKILCEY 102
G CA C + + E + + +H CF C C G + D C
Sbjct: 12 AGAGDLCALCGEHLYVLERLC-VNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQ 70
Query: 103 DYEE 106
+
Sbjct: 71 HLPQ 74
Score = 31.1 bits (70), Expect = 0.031
Identities = 8/48 (16%), Positives = 14/48 (29%)
Query: 1 ALDLFWHEDCLKCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTG 48
F+H C +C C+ L G + C + +
Sbjct: 33 VNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTDSGPS 80
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM
domain EVH1 DO cell motility, phosphorylation,
cytoskeleton; 2.35A {Homo sapiens}
Length = 65
Score = 32.1 bits (73), Expect = 0.012
Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 49 YCAACTKVIPAFEMVMRAKNNVYHL--ECFACQQCNHRFCVGDRFYLCDNKILC 100
C C I + N +H ECF C C+ +G +F + + C
Sbjct: 4 VCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCL-IGQKFMPVEGMVFC 56
Score = 24.0 bits (52), Expect = 8.4
Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 4/41 (9%)
Query: 1 ALDLFWH--EDCLKCGCCDCRLGEVGSTLYQKANLILCKRD 39
+ WH +C C CC L +G ++ C +
Sbjct: 21 YNNFSWHASTECFLCSCCSKCL--IGQKFMPVEGMVFCSVE 59
>1pyb_A Methionyl-tRNA synthetase beta subunit; oligonucleotide,
oligosaccharide-binding fold, OB-fold, beta-barrel, RNA
binding protein; 2.50A {Aquifex aeolicus} SCOP: b.40.4.4
Length = 111
Score = 27.5 bits (62), Expect = 0.99
Identities = 10/18 (55%), Positives = 10/18 (55%), Gaps = 2/18 (11%)
Query: 130 EERQVFANIA--YNPSSL 145
EER V A IA Y P L
Sbjct: 44 EERTVVAGIAKYYTPEEL 61
>2cwp_A Metrs related protein; structural GEN riken structural
genomics/proteomics initiative, RSGI; 2.10A {Pyrococcus
horikoshii}
Length = 112
Score = 26.8 bits (60), Expect = 1.7
Identities = 7/18 (38%), Positives = 8/18 (44%), Gaps = 2/18 (11%)
Query: 130 EERQVFANIA--YNPSSL 145
EER + IA P L
Sbjct: 44 EERTIVTGIADQIPPEEL 61
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division),
ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear
protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP:
a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B*
1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B*
2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B*
2x1n_B* 1vyw_B* ...
Length = 260
Score = 25.7 bits (57), Expect = 7.8
Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 12/55 (21%)
Query: 104 YEERQVFCVGDRFYLCDNKILCEYDYE-----ERQVFANIAYN---PSSLAHLRR 150
+EE V + Y+ D+ Y + E V + ++ P+ L +
Sbjct: 95 FEEIYPPEVAEFVYITDD----TYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQ 145
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Length = 269
Score = 25.4 bits (56), Expect = 8.6
Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 12/55 (21%)
Query: 104 YEERQVFCVGDRFYLCDNKILCEYDYE-----ERQVFANIAYN---PSSLAHLRR 150
YEE +GD ++ DN Y E ++ + + P L LRR
Sbjct: 94 YEEMYPPEIGDFAFVTDN----TYTKHQIRQMEMKILRALNFGLGRPLPLHFLRR 144
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.331 0.144 0.496
Gapped
Lambda K H
0.267 0.0538 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,452,826
Number of extensions: 134551
Number of successful extensions: 803
Number of sequences better than 10.0: 1
Number of HSP's gapped: 690
Number of HSP's successfully gapped: 136
Length of query: 155
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 69
Effective length of database: 4,300,587
Effective search space: 296740503
Effective search space used: 296740503
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 53 (24.6 bits)