RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12215
(155 letters)
>d1rutx2 g.39.1.3 (X:49-82) LIM only 4 (Lmo4) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 34
Score = 57.5 bits (139), Expect = 4e-13
Identities = 17/34 (50%), Positives = 26/34 (76%)
Query: 12 KCGCCDCRLGEVGSTLYQKANLILCKRDYLRLFG 45
KC C +LG++G++ Y K+ +ILC+ DY+RLFG
Sbjct: 1 KCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 34
>d1j2oa2 g.39.1.3 (A:31-63) Rhombotin-2 (Lmo2) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 33
Score = 56.8 bits (137), Expect = 9e-13
Identities = 21/33 (63%), Positives = 22/33 (66%)
Query: 11 LKCGCCDCRLGEVGSTLYQKANLILCKRDYLRL 43
L C C CRLGEVG LY K LC+RDYLRL
Sbjct: 1 LSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRL 33
>d1rutx3 g.39.1.3 (X:83-113) LIM only 4 (Lmo4) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 31
Score = 52.8 bits (127), Expect = 4e-11
Identities = 19/30 (63%), Positives = 25/30 (83%)
Query: 47 TGYCAACTKVIPAFEMVMRAKNNVYHLECF 76
+G C+AC + IPA E+VMRA+ NVYHL+CF
Sbjct: 2 SGACSACGQSIPASELVMRAQGNVYHLKCF 31
>d1x3ha1 g.39.1.3 (A:8-42) Leupaxin {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 31.5 bits (72), Expect = 0.003
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 38 RDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECF 76
+D+L +F C C + + E + A + V+H ECF
Sbjct: 1 KDFLAMFSPK--CGGCNRPVL--ENYLSAMDTVWHPECF 35
>d1rutx4 g.39.1.3 (X:114-146) LIM only 4 (Lmo4) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 33
Score = 28.7 bits (64), Expect = 0.039
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 77 ACQQCNHRFCVGDRFYLCDNKILCEYD 103
C C +R GDRF+ + + CE+D
Sbjct: 1 TCSTCRNRLVPGDRFHYINGSLFCEHD 27
>d1x63a1 g.39.1.3 (A:8-44) Four and a half LIM domains protein 1,
FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 37
Score = 26.3 bits (58), Expect = 0.30
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 40 YLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECF 76
R C C K I A + + K V+H +CF
Sbjct: 3 TTREDSPK--CKGCFKAIVAGDQNVEYKGTVWHKDCF 37
>d1b8ta4 g.39.1.3 (A:144-192) Cysteine-rich (intestinal) protein,
CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 49
Score = 26.2 bits (58), Expect = 0.37
Identities = 12/35 (34%), Positives = 15/35 (42%)
Query: 15 CCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGY 49
C C +TL K I CK Y + FG G+
Sbjct: 2 CAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKGF 36
>d1b8ta3 g.39.1.3 (A:101-143) Cysteine-rich (intestinal) protein,
CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 43
Score = 26.0 bits (57), Expect = 0.38
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 44 FGTTGYCAACTKVIPAFEMVMRAKNNVYHLECF 76
G + C C + + A E V+ +H CF
Sbjct: 12 VGGSDGCPRCGQAVYAAEKVI-GAGKSWHKSCF 43
>d1g47a2 g.39.1.3 (A:36-70) Pinch (particularly interesting new
Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 25.1 bits (55), Expect = 0.65
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 76 FACQQCNHRFCVGDRFYLCDNKILCEYDYEER 107
F C QC +F FY + + CE+D++
Sbjct: 1 FVCAQCFQQF-PEGLFYEFEGRKYCEHDFQML 31
>d2dloa1 g.39.1.3 (A:8-42) Thyroid receptor interacting protein 6,
TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 24.7 bits (54), Expect = 0.85
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 50 CAACTKVIPAFEMVMRAKNNVYHLECF 76
CA C++ I + ++RA YH CF
Sbjct: 11 CATCSQPI--LDRILRAMGKAYHPGCF 35
>d1b48a1 a.45.1.1 (A:80-222) Class alpha GST {Mouse (Mus musculus),
(a1-4) [TaxId: 10090]}
Length = 143
Score = 25.8 bits (56), Expect = 1.8
Identities = 13/79 (16%), Positives = 26/79 (32%)
Query: 38 RDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNK 97
+D + + + K ++ RAK + + + F VG++ D +
Sbjct: 21 QDLMMMIAVAPFKTPKEKEESYDLILSRAKTRYFPVFEKILKDHGEAFLVGNQLSWADIQ 80
Query: 98 ILCEYDYEERQVFCVGDRF 116
+L E V F
Sbjct: 81 LLEAILMVEELSAPVLSDF 99
>d1x3ha2 g.39.1.3 (A:43-74) Leupaxin {Human (Homo sapiens) [TaxId:
9606]}
Length = 32
Score = 23.6 bits (51), Expect = 2.4
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 78 CQQCNHRFCVGDRFYLCDNKILCEYDYEERQ 108
C C F G F+ D + CE Y R+
Sbjct: 2 CGDCFTSFSTGS-FFELDGRPFCELHYHHRR 31
>d1b8ta2 g.39.1.3 (A:36-100) Cysteine-rich (intestinal) protein,
CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 65
Score = 23.7 bits (51), Expect = 3.9
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 15 CCDCRLGEVGSTLYQKANLILCKRDYLRLFGTTGY 49
C C+ +T+ + I CK Y + +G G
Sbjct: 2 CMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGK 36
>d1rutx1 g.39.1.3 (X:19-48) LIM only 4 (Lmo4) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 30
Score = 22.0 bits (47), Expect = 7.3
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 1 ALDLFWHEDCL 11
A+D +WH CL
Sbjct: 20 AMDSYWHSRCL 30
>d2co8a2 g.39.1.3 (A:8-43) Nedd9 interacting protein with calponin
homology, NICAL (MICAL1) {Human (Homo sapiens) [TaxId:
9606]}
Length = 36
Score = 22.4 bits (48), Expect = 7.8
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 45 GTTGYCAACTKVIPAFEMVMRAKNNVYHLECF 76
G CA C + + E + + +H CF
Sbjct: 6 GAGDLCALCGEHLYVLERLC-VNGHFFHRSCF 36
>d1j2oa1 g.39.1.3 (A:1-30) Rhombotin-2 (Lmo2) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 30
Score = 22.0 bits (47), Expect = 8.3
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 1 ALDLFWHEDC 10
A+D +WHEDC
Sbjct: 21 AIDQYWHEDC 30
>d2hanb1 g.39.1.2 (B:5-87) Ecdysone receptor DNA-binding domain
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 83
Score = 23.0 bits (49), Expect = 9.3
Identities = 9/36 (25%), Positives = 11/36 (30%)
Query: 75 CFACQQCNHRFCVGDRFYLCDNKILCEYDYEERQVF 110
C C+ R Y C CE D R+
Sbjct: 20 CEGCKGFFRRSVTKSAVYCCKFGRACEMDMYMRRKC 55
>d1k3ya1 a.45.1.1 (A:81-222) Class alpha GST {Human (Homo sapiens),
(a1-1) [TaxId: 9606]}
Length = 142
Score = 23.6 bits (50), Expect = 9.7
Identities = 10/70 (14%), Positives = 20/70 (28%)
Query: 38 RDYLRLFGTTGYCAACTKVIPAFEMVMRAKNNVYHLECFACQQCNHRFCVGDRFYLCDNK 97
D + C K + + KN + + + VG++ D
Sbjct: 20 ADLGEMILLLPVCPPEEKDAKLALIKEKIKNRYFPAFEKVLKSHGQDYLVGNKLSRADIH 79
Query: 98 ILCEYDYEER 107
++ Y E
Sbjct: 80 LVELLYYVEE 89
>d1v6ga2 g.39.1.3 (A:42-81) Actin-binding LIM protein 2, abLIM2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 40
Score = 22.2 bits (47), Expect = 9.7
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 76 FACQQCNHRFCVGDRFYLCDNKILCEY 102
F C C F GDR + +C+
Sbjct: 1 FVCAVCRLPFPPGDRVTFNGKECMCQK 27
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.331 0.144 0.496
Gapped
Lambda K H
0.267 0.0421 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 641,581
Number of extensions: 30457
Number of successful extensions: 240
Number of sequences better than 10.0: 1
Number of HSP's gapped: 236
Number of HSP's successfully gapped: 65
Length of query: 155
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 77
Effective length of database: 1,336,656
Effective search space: 102922512
Effective search space used: 102922512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 49 (23.4 bits)