BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12216
(646 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5R660|SEC63_PONAB Translocation protein SEC63 homolog OS=Pongo abelii GN=SEC63 PE=2
SV=1
Length = 761
Score = 342 bits (877), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 166/371 (44%), Positives = 254/371 (68%), Gaps = 5/371 (1%)
Query: 1 MKLTKAYQALTDEESRRNFEKYGNPDGPGAMSFGIALPSYIVEKENSVWVLGLYALVFMV 60
M++ KAY ALTDEESR+N+E++GNPDGP A SFGIALP++IV+++NS+ VL +Y L FMV
Sbjct: 143 MRIAKAYAALTDEESRKNWEEFGNPDGPQATSFGIALPAWIVDQKNSILVLLVYGLAFMV 202
Query: 61 ALPTAVGMWWYKSIRYTGDKVLLETINFYYAFFQITPHMALKRVLMILGASLEFDRRFNS 120
LP VG WWY+SIRY+GD++L+ T Y F T +M +KR++M+L + EFD ++N
Sbjct: 203 ILPVVVGSWWYRSIRYSGDQILIRTTQIYTYFVYKTRNMDMKRLIMVLAGASEFDPQYNK 262
Query: 121 EIIERPSDEIEVPQLIRQIPNLGEKNRERPLYHKYSIKARALIYAHLSNMQLTSETLEAD 180
+ RP+D I +PQLIR+I ++ K E PL YS+KAR L+ +HL+ M++ ETLE D
Sbjct: 263 DATSRPTDNILIPQLIREIGSINLKKNEPPLTCPYSLKARVLLLSHLARMKI-PETLEED 321
Query: 181 RMYIVKKCPYLLQEMVTCISQLILLA--YAQRVPRLIHIETLENVMKLCPMIVQGMWDFK 238
+ +++KKCP LLQEMV I QLI++A +R R + +LEN MKL M VQG+ FK
Sbjct: 322 QQFMLKKCPALLQEMVNVICQLIVMARNREEREFRAPTLASLENCMKLSQMAVQGLQQFK 381
Query: 239 NPLLQLPYVTDDHLKHFICKKRY-IKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGN 297
+PLLQLP++ +D+L+ K+Y IK++Q +K +R +++ F+ DE+Y +++ VLG+
Sbjct: 382 SPLLQLPHIEEDNLRRVSNHKKYKIKTIQDLVSLKESDRHTLLHFLEDEKYEEVMAVLGS 441
Query: 298 MPYVDLHVQPEVIDDEATTEYTAGAIITVTCTLMRKPMSVLF-GDDTIKVQFLEPSKEGE 356
PYV + ++ +V+DDE + T G+++TV L R+ M+ +F + +I +P+++G+
Sbjct: 442 FPYVTMDIKSQVLDDEDSNNITVGSLVTVLVKLTRQTMAEVFEKEQSICAAEEQPAEDGQ 501
Query: 357 GEIEEEEKPNG 367
GE + G
Sbjct: 502 GETNKNRTKGG 512
Score = 75.9 bits (185), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/287 (22%), Positives = 130/287 (45%), Gaps = 58/287 (20%)
Query: 373 LPYVTDDHLKHFICKKRY-IKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMPYVD 431
LP++ +D+L+ K+Y IK++Q +K +R +++ F+ DE+Y +++ VLG+ PYV
Sbjct: 387 LPHIEEDNLRRVSNHKKYKIKTIQDLVSLKESDRHTLLHFLEDEKYEEVMAVLGSFPYVT 446
Query: 432 LHVQPEVIDDEATTEYTAGAIITPEVIDDEATTEYTAGAIITVTCTLMRKPMSVLF-GDD 490
+ ++ +V+D DE + T G+++TV L R+ M+ +F +
Sbjct: 447 MDIKSQVLD-------------------DEDSNNITVGSLVTVLVKLTRQTMAEVFEKEQ 487
Query: 491 TIKVQFLEPSKEGEGEIEEEEKPNGTITPVVNKEKQQTHRPVWMKNKKGGKKKKFTKNKH 550
+I +P+++G+GE + G W + KG KK +K K
Sbjct: 488 SICAAEEQPAEDGQGETNKNRTKGG-----------------WQQKSKGPKKTAKSKKKK 530
Query: 551 DKKSSGQKKI------------TNTVEQTEAPADVAKVEKKDTPEESKDVSSESEEESDL 598
+ N V EA K+ EE D S+SEEE
Sbjct: 531 KPLKKKPTPVLLPQSKQQKQKQANGVVGNEAAV-------KEDEEEVSDKGSDSEEEETN 583
Query: 599 SDVENDEVVDKKEKNEDSNNKSEESSDDDDDWEKYQTGLNKRDKYLL 645
D ++++ ++ ++ +++ DD+ +W++ Q + ++++ LL
Sbjct: 584 RDSQSEKDDGSDRDSDREQDE-KQNKDDEAEWQELQQSIQRKERALL 629
>sp|Q9UGP8|SEC63_HUMAN Translocation protein SEC63 homolog OS=Homo sapiens GN=SEC63 PE=1
SV=2
Length = 760
Score = 342 bits (877), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 166/371 (44%), Positives = 254/371 (68%), Gaps = 5/371 (1%)
Query: 1 MKLTKAYQALTDEESRRNFEKYGNPDGPGAMSFGIALPSYIVEKENSVWVLGLYALVFMV 60
M++ KAY ALTDEESR+N+E++GNPDGP A SFGIALP++IV+++NS+ VL +Y L FMV
Sbjct: 143 MRIAKAYAALTDEESRKNWEEFGNPDGPQATSFGIALPAWIVDQKNSILVLLVYGLAFMV 202
Query: 61 ALPTAVGMWWYKSIRYTGDKVLLETINFYYAFFQITPHMALKRVLMILGASLEFDRRFNS 120
LP VG WWY+SIRY+GD++L+ T Y F T +M +KR++M+L + EFD ++N
Sbjct: 203 ILPVVVGSWWYRSIRYSGDQILIRTTQIYTYFVYKTRNMDMKRLIMVLAGASEFDPQYNK 262
Query: 121 EIIERPSDEIEVPQLIRQIPNLGEKNRERPLYHKYSIKARALIYAHLSNMQLTSETLEAD 180
+ RP+D I +PQLIR+I ++ K E PL YS+KAR L+ +HL+ M++ ETLE D
Sbjct: 263 DATSRPTDNILIPQLIREIGSINLKKNEPPLTCPYSLKARVLLLSHLARMKI-PETLEED 321
Query: 181 RMYIVKKCPYLLQEMVTCISQLILLA--YAQRVPRLIHIETLENVMKLCPMIVQGMWDFK 238
+ +++KKCP LLQEMV I QLI++A +R R + +LEN MKL M VQG+ FK
Sbjct: 322 QQFMLKKCPALLQEMVNVICQLIVMARNREEREFRAPTLASLENCMKLSQMAVQGLQQFK 381
Query: 239 NPLLQLPYVTDDHLKHFICKKRY-IKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGN 297
+PLLQLP++ +D+L+ K+Y IK++Q +K +R +++ F+ DE+Y +++ VLG+
Sbjct: 382 SPLLQLPHIEEDNLRRVSNHKKYKIKTIQDLVSLKESDRHTLLHFLEDEKYEEVMAVLGS 441
Query: 298 MPYVDLHVQPEVIDDEATTEYTAGAIITVTCTLMRKPMSVLF-GDDTIKVQFLEPSKEGE 356
PYV + ++ +V+DDE + T G+++TV L R+ M+ +F + +I +P+++G+
Sbjct: 442 FPYVTMDIKSQVLDDEDSNNITVGSLVTVLVKLTRQTMAEVFEKEQSICAAEEQPAEDGQ 501
Query: 357 GEIEEEEKPNG 367
GE + G
Sbjct: 502 GETNKNRTKGG 512
Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/286 (23%), Positives = 131/286 (45%), Gaps = 57/286 (19%)
Query: 373 LPYVTDDHLKHFICKKRY-IKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMPYVD 431
LP++ +D+L+ K+Y IK++Q +K +R +++ F+ DE+Y +++ VLG+ PYV
Sbjct: 387 LPHIEEDNLRRVSNHKKYKIKTIQDLVSLKESDRHTLLHFLEDEKYEEVMAVLGSFPYVT 446
Query: 432 LHVQPEVIDDEATTEYTAGAIITPEVIDDEATTEYTAGAIITVTCTLMRKPMSVLF-GDD 490
+ ++ +V+D DE + T G+++TV L R+ M+ +F +
Sbjct: 447 MDIKSQVLD-------------------DEDSNNITVGSLVTVLVKLTRQTMAEVFEKEQ 487
Query: 491 TIKVQFLEPSKEGEGEIEEEEKPNGTITPVVNKEKQQTHRPVWMKNKKGGKKKKFTKNKH 550
+I +P+++G+GE + G W + KG KK +K K
Sbjct: 488 SICAAEEQPAEDGQGETNKNRTKGG-----------------WQQKSKGPKKTAKSKKKK 530
Query: 551 DKKSSGQKKI-----------TNTVEQTEAPADVAKVEKKDTPEESKDVSSESEEESDLS 599
K + N V EA K+ EE D S+SEEE
Sbjct: 531 PLKKKPTPVLLPQSKQQKQKQANGVVGNEAAV-------KEDEEEVSDKGSDSEEEETNR 583
Query: 600 DVENDEVVDKKEKNEDSNNKSEESSDDDDDWEKYQTGLNKRDKYLL 645
D ++++ ++ ++ +++ DD+ +W++ Q + ++++ LL
Sbjct: 584 DSQSEKDDGSDRDSDREQDE-KQNKDDEAEWQELQQSIQRKERALL 628
>sp|Q8VHE0|SEC63_MOUSE Translocation protein SEC63 homolog OS=Mus musculus GN=Sec63 PE=1
SV=4
Length = 760
Score = 340 bits (871), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 164/362 (45%), Positives = 252/362 (69%), Gaps = 5/362 (1%)
Query: 1 MKLTKAYQALTDEESRRNFEKYGNPDGPGAMSFGIALPSYIVEKENSVWVLGLYALVFMV 60
M++ KAY ALTDEESR+N+E++GNPDGP A SFGIALP++IV+++NS+ VL +Y L FMV
Sbjct: 143 MRIAKAYAALTDEESRKNWEEFGNPDGPQATSFGIALPAWIVDQKNSILVLLVYGLAFMV 202
Query: 61 ALPTAVGMWWYKSIRYTGDKVLLETINFYYAFFQITPHMALKRVLMILGASLEFDRRFNS 120
LP VG WWY+SIRY+GD++L+ T Y F T +M +KR++M+L + EFD ++N
Sbjct: 203 ILPVVVGSWWYRSIRYSGDQILIRTTQIYTYFVYKTRNMDMKRLIMVLAGASEFDPQYNK 262
Query: 121 EIIERPSDEIEVPQLIRQIPNLGEKNRERPLYHKYSIKARALIYAHLSNMQLTSETLEAD 180
+ RP+D I +PQLIR+I ++ K E PL YS+KAR L+ +HL+ M++ ETLE D
Sbjct: 263 DSTSRPTDNILIPQLIREIGSINLKKNEPPLTCPYSLKARVLLLSHLARMKI-PETLEED 321
Query: 181 RMYIVKKCPYLLQEMVTCISQLILLAYA--QRVPRLIHIETLENVMKLCPMIVQGMWDFK 238
+ +++KKCP LLQEMV I QLI++A + +R R + +LEN MKL M VQG+ FK
Sbjct: 322 QQFMLKKCPALLQEMVNVICQLIIMARSREEREFRAPTLASLENCMKLSQMAVQGLQQFK 381
Query: 239 NPLLQLPYVTDDHLKHFICKKRY-IKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGN 297
+PLLQLP++ +D+L+ K+Y IK++Q +K +R S++ F+ DE+Y +++ VLG+
Sbjct: 382 SPLLQLPHIEEDNLRRVSNHKKYKIKTIQDLVSLKESDRHSLLHFLEDEKYEEVMAVLGS 441
Query: 298 MPYVDLHVQPEVIDDEATTEYTAGAIITVTCTLMRKPMSVLF-GDDTIKVQFLEPSKEGE 356
PYV + ++ +V+DDE + T G+++TV L R+ M+ +F + +I +P+++G+
Sbjct: 442 FPYVTMDIKSQVLDDEDSNNITVGSLVTVLVKLTRQTMAEVFEKEQSICAAEEQPTEDGQ 501
Query: 357 GE 358
+
Sbjct: 502 SD 503
Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/275 (24%), Positives = 136/275 (49%), Gaps = 35/275 (12%)
Query: 373 LPYVTDDHLKHFICKKRY-IKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMPYVD 431
LP++ +D+L+ K+Y IK++Q +K +R S++ F+ DE+Y +++ VLG+ PYV
Sbjct: 387 LPHIEEDNLRRVSNHKKYKIKTIQDLVSLKESDRHSLLHFLEDEKYEEVMAVLGSFPYVT 446
Query: 432 LHVQPEVIDDEATTEYTAGAIITPEVIDDEATTEYTAGAIITVTCTLMRKPMSVLF-GDD 490
+ ++ +V+D DE + T G+++TV L R+ M+ +F +
Sbjct: 447 MDIKSQVLD-------------------DEDSNNITVGSLVTVLVKLTRQTMAEVFEKEQ 487
Query: 491 TIKVQFLEPSKEGEGEIEEEEKPNGTITPVVNKEKQQTHRPVWMKNKKGGKKKKFTKNKH 550
+I +P+++G+ + + + G ++K + + + KK KKK T
Sbjct: 488 SICAAEEQPTEDGQSDANKIKAKGGW------QQKNKGPKKMPKSKKKKPLKKKPTTVPL 541
Query: 551 DKKSSGQKKITNTVEQTEAPADVAKVEKKDTPEESKDVSSESEEESDLSDVENDEVVDKK 610
+ ++K N V +EA K+ ++ D S+SEEE D ++ E D
Sbjct: 542 PQAKQQKQKQANGVVGSEAAI-------KEEEDDISDKGSDSEEEETNRDSQS-EKEDGS 593
Query: 611 EKNEDSNNKSEESSDDDDDWEKYQTGLNKRDKYLL 645
++ D ++S DD+ +W++ Q + ++++ LL
Sbjct: 594 DRESDREQDEKQSKDDEAEWQELQQSIQRKERALL 628
>sp|Q9HGN7|SEC63_SCHPO Translocation protein sec63 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=sec63 PE=1 SV=1
Length = 611
Score = 129 bits (325), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 99/332 (29%), Positives = 159/332 (47%), Gaps = 56/332 (16%)
Query: 1 MKLTKAYQALTDEESRRNFEKYGNPDGPGAMSFGIALPSYIVEKENSVWVLGLYALVFMV 60
+++T AY+ALTD+++R N+ YG PD P +S GIALP +I E ENS+++LG Y LVF +
Sbjct: 146 IEITNAYRALTDDKTRENYALYGTPDVPQHISVGIALPKWISESENSIYILGFYGLVFGI 205
Query: 61 ALPTAVGMWWYKSIRYTGDKVLLETINFYYAFFQITPHMALKRVLMILGASLEFDRRFNS 120
LP AVG WWY S YT D V ++T++ + F ++ + L +L + +S E
Sbjct: 206 VLPYAVGKWWYGSRTYTRDHVHVDTVDEW--FPKMETSLTLDELLSLFASSKE------- 256
Query: 121 EIIERPSDEIEVPQLIRQIPNLGEKNRERPLYHKYSIKARALIYAHLSNMQLTSETLEAD 180
L +PN EKN + +Y +K L++ HL+
Sbjct: 257 --------------LTSLVPN--EKNPK-----EYILK---LLFDHLNR----------- 281
Query: 181 RMYIVKKCPYLLQEMVTCISQLILLAYAQRVPRLIHIETLENVMKLCPMIVQGM-WDFKN 239
KK + S ++L A ++NV+KL IVQ + D
Sbjct: 282 -----KKTNNFNTHQILSQSDVVLNALLSVATAFGFANPVDNVLKLWQHIVQAIPLDAPF 336
Query: 240 PLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMP 299
PLLQLP++ + +K+ R I S+ QF + E+ + + + Q +M ++ +P
Sbjct: 337 PLLQLPHLLMEDVKNLSI--RNISSIPQFLSLSEEQTKDYLPNYSKNQLKEMREIANGIP 394
Query: 300 YVDLHVQPEVIDDEATTEY-TAGAIITVTCTL 330
+ + ++DD+ EY T GAI + L
Sbjct: 395 RISVVAAKVLVDDD---EYITVGAIANLILDL 423
>sp|P14906|SEC63_YEAST Protein translocation protein SEC63 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SEC63 PE=1 SV=2
Length = 663
Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/302 (24%), Positives = 129/302 (42%), Gaps = 52/302 (17%)
Query: 1 MKLTKAYQALTDEESRRNFEKYGNPDGPGAMSFGIALPSYIVEKENSVWVLGLYALVFMV 60
+++TKAY++LTDE R+N+ KYG+PDGP + S GIALP ++V+ S ++ Y + +
Sbjct: 174 VQITKAYESLTDELVRQNYLKYGHPDGPQSTSHGIALPRFLVDGSASPLLVVCYVALLGL 233
Query: 61 ALPTAVGMWWYKSIRYTGDKVL-LETINFYYAFFQITPH--MALKRVLMILGASLEFDRR 117
LP V WW ++ YT + + NF P + +L L + EF +
Sbjct: 234 ILPYFVSRWWARTQSYTKKGIHNVTASNFVSNLVNYKPSEIVTTDLILHWLSFAHEFKQF 293
Query: 118 FNSEIIERPSDEIEVPQLIRQIPNLGEKNRERPLYHKYSIKARALIYAHLSNMQLTSETL 177
F P+L + E+ L+ H++ S L
Sbjct: 294 F---------------------PDLQPTDFEK------------LLQDHINRRD--SGKL 318
Query: 178 EADRMYIVKKCPYLLQEMVTCISQLILLAYAQRVPRLIHIETLENVMKLCPMIVQGMWDF 237
+ IV KC LL ++ L A L I T + +++ P+
Sbjct: 319 NNAKFRIVAKCHSLLHGLLDIACGFRNLDIA-----LGAINTFKCIVQAVPLTPNCQ--- 370
Query: 238 KNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGN 297
+LQLP V + HFI K I +L + +++ + V+ + + ++ L+V +
Sbjct: 371 ---ILQLPNVDKE---HFITKTGDIHTLGKLFTLEDAKIGEVLGIKDQAKLNETLRVASH 424
Query: 298 MP 299
+P
Sbjct: 425 IP 426
>sp|O75643|U520_HUMAN U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens
GN=SNRNP200 PE=1 SV=2
Length = 2136
Score = 70.5 bits (171), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 106/219 (48%), Gaps = 27/219 (12%)
Query: 121 EIIERPSDEIEVP------QLIRQIPNLGEKNRERPLYHKYSIKARALIYAHLSNMQLTS 174
EII ++ +P L+RQ+ P ++ +K L+ AHLS MQL++
Sbjct: 1847 EIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSA 1906
Query: 175 ETLEADRMYIVKKCPYLLQEMVTCISQLILLAYAQRVPRLIHIETLENVMKLCPMIVQGM 234
E L++D I+ K L+Q V +S L+ P L M+L M+ Q M
Sbjct: 1907 E-LQSDTEEILSKAIRLIQACVDVLSSNGWLS-----PAL-------AAMELAQMVTQAM 1953
Query: 235 WDFKNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKV 294
W + L QLP+ T +H+K C + ++S+ +M++EER ++++ + D Q +D+ +
Sbjct: 1954 WSKDSYLKQLPHFTSEHIKR--CTDKGVESVFDIMEMEDEERNALLQ-LTDSQIADVARF 2010
Query: 295 LGNMPYVDLHVQPEVIDDEATTEYTAGAIITVTCTLMRK 333
P ++L EV+D ++ +G + V L R+
Sbjct: 2011 CNRYPNIELSY--EVVDKDSI---RSGGPVVVLVQLERE 2044
Score = 35.8 bits (81), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 67/151 (44%), Gaps = 24/151 (15%)
Query: 95 ITPHMALKRVLMILGASLEFDRRFNSEIIERPSDEIEVPQLIRQIPNLGEKNRERPLYHK 154
+ P ++ + + S EF I R +++E+ +L+ ++P +++ E P
Sbjct: 1005 LKPTLSEIELFRVFSLSSEF-----KNITVREEEKLELQKLLERVPIPVKESIEEP---- 1055
Query: 155 YSIKARALIYAHLSNMQLTSETLEADRMYIVKKCPYLLQEMVTCISQLIL-LAYAQRVPR 213
S K L+ A +S ++L L AD +Y+ + L++ I +++L +AQ
Sbjct: 1056 -SAKINVLLQAFISQLKLEGFALMADMVYVTQSAGRLMR----AIFEIVLNRGWAQLT-- 1108
Query: 214 LIHIETLENVMKLCPMIVQGMWDFKNPLLQL 244
+ + LC MI + MW PL Q
Sbjct: 1109 -------DKTLNLCKMIDKRMWQSMCPLRQF 1132
>sp|Q9VUV9|U520_DROME Putative U5 small nuclear ribonucleoprotein 200 kDa helicase
OS=Drosophila melanogaster GN=CG5931 PE=2 SV=4
Length = 2142
Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/277 (24%), Positives = 131/277 (47%), Gaps = 37/277 (13%)
Query: 59 MVALPTAVGM-WWYKSIRYTGDKVLLETINFYYAFFQITPHMALKRVLMILGASLEFDRR 117
M LP +GM Y I YT TI + + ++ +L I+ ++ E++
Sbjct: 1807 MDTLPLNLGMIAAYYYINYT-------TIELFS--LSLNSKTKVRGLLEIISSAAEYE-- 1855
Query: 118 FNSEIIERPSDEIEVPQLIRQIPN-LGEKNRERPLYHKYSIKARALIYAHLSNMQLTSET 176
+++ R +E + L +++PN L N P ++ IK L+ AHLS +QL E
Sbjct: 1856 ---DVVVRHHEEQVLRTLSQRLPNKLTGPNETAPKFNDPHIKTNLLLQAHLSRLQLGPE- 1911
Query: 177 LEADRMYIVKKCPYLLQEMVTCISQLILLAYAQRVPRLIHIETLENVMKLCPMIVQGMWD 236
L+ D I+ K L+Q V +S L+ A M+L M+ Q MW
Sbjct: 1912 LQGDTEQILSKAIRLIQACVDVLSSNGWLSPAV------------AAMELAQMVTQAMWS 1959
Query: 237 FKNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLG 296
+ L QLP+ + + +K C ++ I+++ ++++E+R +++ ++D Q +D+ +
Sbjct: 1960 KDSYLKQLPHFSPEIVKR--CTEKKIETVFDIMELEDEDRTRLLQ-LSDLQMADVARFCN 2016
Query: 297 NMPYVDLHVQPEVIDDEATTEYTAGAIITVTCTLMRK 333
P ++L+ EV+D + +G+ + V L R+
Sbjct: 2017 RYPNIELNY--EVVDKD---RINSGSTVNVVVQLERE 2048
Score = 35.8 bits (81), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 65/142 (45%), Gaps = 22/142 (15%)
Query: 125 RPSDEIEVPQLIRQIPNLGEKNRERPLYHKYSIKARALIYAHLSNMQLTSETLEADRMYI 184
R +++E+ +L+ ++P +++ E ++S K L+ A++S ++L L +D ++I
Sbjct: 1030 REEEKLELQKLMERVPIPIKESIE-----EHSAKVNVLLQAYISQLKLEGFALMSDMVFI 1084
Query: 185 VKKCPYLLQEMVTCISQLILLAYAQRVPRLIHIETLENVMKLCPMIVQGMWDFKNPLLQL 244
+ L++ + + + +AQ + + LC MI + MW PL Q
Sbjct: 1085 TQSAARLMRAIFEIV---LTRGWAQLA---------DKTLTLCKMIDRRMWQSMTPLRQF 1132
Query: 245 PYVTDD-----HLKHFICKKRY 261
+ D+ KHF + Y
Sbjct: 1133 KKMPDEIAKKLEKKHFPWGRLY 1154
>sp|P32639|BRR2_YEAST Pre-mRNA-splicing helicase BRR2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=BRR2 PE=1 SV=2
Length = 2163
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 99/220 (45%), Gaps = 32/220 (14%)
Query: 91 AFFQITPHMA-------LKRVLMILGASLEFDRRFNSEIIERPSDEIEVPQLIRQIPNLG 143
+FF I ++ LK +L +L ++EF+ + R D + +L +++P
Sbjct: 1859 SFFTIQSFVSSLSNTSTLKNMLYVLSTAVEFE-----SVPLRKGDRALLVKLSKRLP--- 1910
Query: 144 EKNRERPLYHKYSIKARALIYAHLSNMQLTSETLEADRMYIVKKCPYLLQEMVTCISQLI 203
+ E S K L+ A+ S ++L + + D I++K L+ +V +S
Sbjct: 1911 LRFPEHTSSGSVSFKVFLLLQAYFSRLELPVD-FQNDLKDILEKVVPLINVVVDILSANG 1969
Query: 204 LLAYAQRVPRLIHIETLENVMKLCPMIVQGMWDFKNPLLQLPYVTDDHLKHFICKKRYIK 263
L M L M++QG+WD NPL Q+P+ + L+ CK+ ++
Sbjct: 1970 YL-------------NATTAMDLAQMLIQGVWDVDNPLRQIPHFNNKILEK--CKEINVE 2014
Query: 264 SLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMPYVDL 303
++ +++EER ++ + D Q + + + N P V+L
Sbjct: 2015 TVYDIMALEDEERDEILT-LTDSQLAQVAAFVNNYPNVEL 2053
>sp|Q9U2G0|U520_CAEEL Putative U5 small nuclear ribonucleoprotein 200 kDa helicase
OS=Caenorhabditis elegans GN=Y46G5A.4 PE=3 SV=1
Length = 2145
Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 112/230 (48%), Gaps = 33/230 (14%)
Query: 87 NFYYAFFQITP--HMALK-----RVLM-ILGASLEFDRRFNSEIIERPSDEIEVPQLIRQ 138
++YY +Q M+LK R L+ I+ AS EF + R +++ + QL +
Sbjct: 1819 SYYYISYQTIELFSMSLKEKTKTRALIEIISASSEF-----GNVPMRHKEDVILRQLAER 1873
Query: 139 IPNLGEKNRERPLYHKYSIKARALIYAHLSNMQLTSETLEADRMYIVKKCPYLLQEMVTC 198
+P G+ ++ + +K LI+AHLS ++LT+E L D IV + L+Q V
Sbjct: 1874 LP--GQLKNQK--FTDPHVKVNLLIHAHLSRVKLTAE-LNKDTELIVLRACRLVQACVDV 1928
Query: 199 ISQLILLAYAQRVPRLIHIETLENVMKLCPMIVQGMWDFKNPLLQLPYVTDDHLKHFICK 258
+S L+ A IH M+L M+ Q M+ + L QLP+ + L+ K
Sbjct: 1929 LSSNGWLSPA------IH------AMELSQMLTQAMYSNEPYLKQLPHCSAALLER--AK 1974
Query: 259 KRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMPYVDLHVQPE 308
+ + S+ + +++N++R +++ M + +D+ + + P +++ + E
Sbjct: 1975 AKEVTSVFELLELENDDRSDILQ-MEGAELADVARFCNHYPSIEVATELE 2023
Score = 37.4 bits (85), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 13/106 (12%)
Query: 156 SIKARALIYAHLSNMQLTSETLEADRMYIVKKCPYLLQEMVTCISQLILLAYAQRVPRLI 215
S K L+ A++S ++L L+AD +++ + L + + + AQ+
Sbjct: 1049 SAKTNVLLQAYISQLKLEGFALQADMVFVAQSAGRLFRALFEIVLWRGWAGLAQK----- 1103
Query: 216 HIETLENVMKLCPMIVQGMWDFKNPLLQLPYVTDDHLKHFICKKRY 261
V+ LC M+ Q W NPL Q + + ++ I KK Y
Sbjct: 1104 -------VLTLCKMVTQRQWGSLNPLHQFKKIPSEVVRS-IDKKNY 1141
>sp|Q55CI8|HELCL_DICDI Activating signal cointegrator 1 complex subunit 3-like
OS=Dictyostelium discoideum GN=ascc3l PE=3 SV=1
Length = 2237
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 99/225 (44%), Gaps = 31/225 (13%)
Query: 118 FNSEIIERPSDEIEVPQLIRQIPNLGEKNRERPLYHKYSIKARALIYAHLSNMQLTSETL 177
FNS I D+I L++ +L +K ++P Y + S K L+ H S ++++ L
Sbjct: 1935 FNSLPIRHREDQI----LMKLASHLPQK-IDKPNYQEISTKVNVLLQCHFSRESISAD-L 1988
Query: 178 EADRMYIVKKCPYLLQEMVTCISQLILLAYAQRVPRLIHIETLENVMKLCPMIVQGMWDF 237
D+ +I++ LLQ +V IS L A M+L MI Q MWD
Sbjct: 1989 YQDQKFILENATRLLQAIVDVISSNSWLQPAIAA------------MELSQMITQAMWDS 2036
Query: 238 KNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGN 297
+ QLP++ + + I+S+ + + R ++ ++ ++ +D+++
Sbjct: 2037 DSVFKQLPHMNKRRIDAITSQG--IESVFDLMSLDDNSRIQLLD-LSQQESNDLVQSFMK 2093
Query: 298 MPYVDLHVQPEVIDDEATTEYTAGAIITVTCTLMRKPMSVLFGDD 342
P +D+ Q + DD A +I+TV + R GDD
Sbjct: 2094 YPDIDISYQVQDEDD-----LHADSIMTVEMVIERD-----LGDD 2128
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/218 (21%), Positives = 91/218 (41%), Gaps = 33/218 (15%)
Query: 94 QITPHMALKRVLMILGASLEFDRRFNSEIIERPSDEIEVPQLIRQIPNLGEKNRERPLYH 153
+ P M+ +L + S EF ++ R ++ E+ +L+ ++P ++N E P
Sbjct: 1073 HLKPSMSDIELLRVFSLSSEF-----KNVVVREGEKFELEKLLERVPIPIKENIEEP--- 1124
Query: 154 KYSIKARALIYAHLSNMQLTSETLEADRMYIVKKCPYLLQEMVTCISQLILLAYAQRVPR 213
S K L+ ++SN++L L D YI + + + + + + +AQ +
Sbjct: 1125 --SSKINVLLQTYISNLKLDGFALVVDMFYIAQSASRITRALFEIV---LKKGWAQLAKK 1179
Query: 214 LIHIETLENVMKLCPMIVQGMWDFKNPLLQLPYVTDDHLKHFICKKRYIKSLQQF--AQM 271
++ L MI MW ++PL Q ++ L + I+ L ++ Q+
Sbjct: 1180 ---------ILNLAKMIDSKMWSSQSPLRQFHKISPKVLNQLERRGIPIEDLYEYNSQQL 1230
Query: 272 KNEERRSVVKFMNDEQYSDMLKVLGNMPYVDL--HVQP 307
N N + + ++ N P +DL HVQP
Sbjct: 1231 GN-------AIQNPSEGKQLFDLIHNFPKLDLTAHVQP 1261
>sp|Q9UT24|BRR2_SCHPO Pre-mRNA-splicing factor brr2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=brr2 PE=1 SV=1
Length = 2176
Score = 42.4 bits (98), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 48/233 (20%), Positives = 97/233 (41%), Gaps = 36/233 (15%)
Query: 101 LKRVLMILGASLEFD----RRFNSEIIERPSDEIEVPQLIRQIPNLGEKNRERPLYHKYS 156
+K +L I+ ++ E++ R++ ++ER + V L N E P
Sbjct: 1878 MKGLLEIVTSAAEYEQLPIRKYEDIVLERIHSRLPV--------RLSNPNYEDP-----H 1924
Query: 157 IKARALIYAHLSNMQLTSETLEADRMYIVKKCPYLLQEMVTCISQLILLAYAQRVPRLIH 216
K+ L+ AH S +L L D+ +I+ + LL V +S H
Sbjct: 1925 TKSFILLAAHFSRFELPP-GLVIDQKFILTRVHNLLGACVDTLSSEG------------H 1971
Query: 217 IETLENVMKLCPMIVQGMWDFKNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEER 276
+ M++ M+ Q +WD +PL Q+PY D ++ C K + + + +E+R
Sbjct: 1972 LIACIRPMEMSQMVTQALWDRDSPLKQIPYFDDALIER--CNKEGVHDVFDIIDLDDEKR 2029
Query: 277 RSVVKFMNDEQYSDMLKVLGNMPYVDLHVQPEVIDDEATTEYTAGAIITVTCT 329
++ M++ + + + P +D+ + I+D + +++ V T
Sbjct: 2030 TELLH-MDNAHLAKCAEFINKYPDIDIDFE---IEDSEDVHANSPSVLIVQLT 2078
>sp|Q54G57|HELC1_DICDI Activating signal cointegrator 1 complex subunit 3 OS=Dictyostelium
discoideum GN=ascc3 PE=3 SV=1
Length = 2195
Score = 40.8 bits (94), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 83/212 (39%), Gaps = 35/212 (16%)
Query: 100 ALKRVLMILGASLEFDRRFNSEIIERPSDEIEVPQLIRQIPNLGEKNRERPLYHKYSIKA 159
L RVL EF R N EI+ + +E L +I N Y K
Sbjct: 1842 TLLRVLSDAAEYSEFPVRHNEEILNQELNE----NLPIKIGN----------YEDSHTKV 1887
Query: 160 RALIYAHLSNMQLTSETLEADRMYIVKKCPYLLQEMVTCISQLILLAYAQRVPRLIHIET 219
L+ AH L D + + +LQ M+ + A A +V RL+
Sbjct: 1888 HLLLQAHFQRCPLPITDFTTDTKSALDQGIRILQAMIDVSFEYGYFATAIQVIRLLQ--- 1944
Query: 220 LENVMKLCPMIVQGMWDFKNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQM-------K 272
M+VQG WD+ + L+ LP++ D F+ + + +Q + + +
Sbjct: 1945 ---------MLVQGRWDYDSSLMTLPHINKD-FADFLSSNLILSNGEQISNLSDMLKIPR 1994
Query: 273 NEERRSVVKF-MNDEQYSDMLKVLGNMPYVDL 303
++ S+ ++D Q + L V+ ++P V +
Sbjct: 1995 DKIHLSLTNIGLSDSQIKETLNVIDHLPKVKI 2026
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 247,887,352
Number of Sequences: 539616
Number of extensions: 11129045
Number of successful extensions: 78376
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 1468
Number of HSP's that attempted gapping in prelim test: 51672
Number of HSP's gapped (non-prelim): 17495
length of query: 646
length of database: 191,569,459
effective HSP length: 124
effective length of query: 522
effective length of database: 124,657,075
effective search space: 65070993150
effective search space used: 65070993150
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 65 (29.6 bits)