Query psy12216
Match_columns 646
No_of_seqs 339 out of 929
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 21:47:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12216.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12216hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4434|consensus 100.0 2.3E-64 4.9E-69 516.0 23.4 249 89-486 1-249 (520)
2 COG5407 SEC63 Preprotein trans 100.0 3.4E-51 7.3E-56 428.9 15.4 331 1-387 147-487 (610)
3 PF02889 Sec63: Sec63 Brl doma 100.0 3E-39 6.6E-44 341.6 24.2 255 63-388 1-255 (314)
4 smart00611 SEC63 Domain of unk 100.0 1.5E-38 3.3E-43 336.3 27.9 236 62-334 3-238 (312)
5 KOG0721|consensus 100.0 3.4E-34 7.3E-39 278.7 -1.5 87 1-87 143-229 (230)
6 KOG0951|consensus 99.9 9.2E-28 2E-32 276.2 10.4 260 51-358 794-1056(1674)
7 KOG0952|consensus 99.8 9.6E-19 2.1E-23 200.7 9.4 240 48-347 583-822 (1230)
8 PRK00254 ski2-like helicase; P 99.7 6E-16 1.3E-20 181.7 14.8 207 60-297 477-700 (720)
9 PRK02362 ski2-like helicase; P 99.6 1.1E-15 2.3E-20 180.0 15.1 203 61-298 487-706 (737)
10 PRK01172 ski2-like helicase; P 99.6 1.6E-14 3.5E-19 168.5 15.6 198 60-298 464-668 (674)
11 KOG4434|consensus 99.4 2.6E-12 5.7E-17 133.7 10.9 75 262-336 173-247 (520)
12 PF02889 Sec63: Sec63 Brl doma 97.9 1.2E-05 2.7E-10 85.2 5.4 91 367-485 147-237 (314)
13 smart00611 SEC63 Domain of unk 97.7 4.8E-05 1E-09 80.8 6.4 89 368-483 151-239 (312)
14 KOG0951|consensus 96.3 0.0046 1E-07 74.6 5.5 215 102-333 18-267 (1674)
15 COG1204 Superfamily II helicas 94.3 0.064 1.4E-06 64.0 5.9 172 54-256 492-666 (766)
16 COG0484 DnaJ DnaJ-class molecu 91.1 0.12 2.6E-06 56.3 2.1 27 2-28 49-75 (371)
17 COG5407 SEC63 Preprotein trans 90.3 0.3 6.4E-06 53.9 4.1 84 368-475 335-419 (610)
18 PF14520 HHH_5: Helix-hairpin- 84.9 1.4 2.9E-05 35.4 4.0 53 241-296 7-59 (60)
19 PRK14288 chaperone protein Dna 84.6 0.56 1.2E-05 51.5 2.2 24 2-25 48-71 (369)
20 PRK14296 chaperone protein Dna 82.7 0.7 1.5E-05 50.8 2.0 24 2-25 48-71 (372)
21 PRK14286 chaperone protein Dna 82.4 0.79 1.7E-05 50.4 2.2 23 2-24 49-71 (372)
22 PRK14287 chaperone protein Dna 81.8 0.84 1.8E-05 50.2 2.2 23 2-24 48-70 (371)
23 PRK14298 chaperone protein Dna 79.8 0.97 2.1E-05 49.8 1.8 23 2-24 49-71 (377)
24 PRK14279 chaperone protein Dna 79.3 0.96 2.1E-05 50.1 1.6 23 2-24 54-76 (392)
25 PF13543 KSR1-SAM: SAM like do 78.4 25 0.00055 33.0 10.4 57 238-297 60-127 (129)
26 PRK14291 chaperone protein Dna 78.1 1.3 2.8E-05 48.9 2.1 24 2-25 47-70 (382)
27 PRK14285 chaperone protein Dna 77.9 1.1 2.4E-05 49.2 1.5 24 2-25 48-71 (365)
28 PRK14276 chaperone protein Dna 77.9 1.3 2.8E-05 48.9 2.0 23 2-24 48-70 (380)
29 KOG0713|consensus 77.8 1.3 2.9E-05 47.5 2.0 22 2-23 61-82 (336)
30 PRK14284 chaperone protein Dna 76.8 1.5 3.2E-05 48.6 2.2 23 2-24 46-68 (391)
31 PRK14280 chaperone protein Dna 76.5 1.5 3.3E-05 48.3 2.1 24 2-25 48-71 (376)
32 PRK14300 chaperone protein Dna 76.4 1.4 3E-05 48.5 1.8 23 2-24 47-69 (372)
33 PRK14277 chaperone protein Dna 74.8 1.8 3.9E-05 47.8 2.2 23 2-24 50-72 (386)
34 PRK14283 chaperone protein Dna 74.6 1.7 3.7E-05 47.9 1.9 23 2-24 49-71 (378)
35 PRK14294 chaperone protein Dna 74.4 1.9 4.1E-05 47.3 2.2 24 2-25 49-72 (366)
36 PRK14299 chaperone protein Dna 74.3 2 4.4E-05 45.6 2.3 24 2-25 48-71 (291)
37 KOG0712|consensus 73.7 1.8 4E-05 46.7 1.8 23 1-23 45-67 (337)
38 KOG0716|consensus 73.1 1.7 3.6E-05 45.4 1.2 23 1-23 75-97 (279)
39 PRK14282 chaperone protein Dna 72.4 2.1 4.5E-05 47.0 1.9 24 2-25 50-73 (369)
40 PTZ00037 DnaJ_C chaperone prot 72.4 2.1 4.6E-05 47.9 2.0 24 2-25 69-92 (421)
41 PRK14278 chaperone protein Dna 72.1 2 4.3E-05 47.4 1.7 24 2-25 47-70 (378)
42 PRK14289 chaperone protein Dna 71.2 2.5 5.3E-05 46.8 2.1 24 2-25 50-73 (386)
43 PTZ00341 Ring-infected erythro 69.2 3.2 6.9E-05 50.4 2.5 27 2-29 617-643 (1136)
44 PRK10767 chaperone protein Dna 69.1 2.7 5.8E-05 46.2 1.8 24 2-25 49-72 (371)
45 PRK14290 chaperone protein Dna 68.2 2.7 5.8E-05 46.2 1.6 24 2-25 49-72 (365)
46 PRK14281 chaperone protein Dna 68.0 2.7 6E-05 46.6 1.6 24 2-25 48-71 (397)
47 PRK14292 chaperone protein Dna 67.3 2.9 6.3E-05 46.0 1.6 24 2-25 46-69 (371)
48 KOG2422|consensus 66.9 3.5 7.7E-05 47.2 2.2 7 464-470 35-41 (665)
49 PRK14297 chaperone protein Dna 66.5 2.8 6E-05 46.3 1.3 24 2-25 49-72 (380)
50 PRK14293 chaperone protein Dna 66.4 3.3 7.2E-05 45.6 1.9 24 2-25 47-70 (374)
51 PRK14301 chaperone protein Dna 64.5 3.4 7.3E-05 45.5 1.5 23 2-24 49-71 (373)
52 smart00540 LEM in nuclear memb 61.8 6.3 0.00014 30.0 2.1 22 7-28 3-24 (44)
53 TIGR02349 DnaJ_bact chaperone 61.8 4.5 9.7E-05 44.1 1.8 24 2-25 44-67 (354)
54 PRK10266 curved DNA-binding pr 61.1 4.8 0.0001 43.0 1.9 23 2-24 48-70 (306)
55 PRK07758 hypothetical protein; 60.6 22 0.00048 31.5 5.5 52 244-298 39-90 (95)
56 PF03118 RNA_pol_A_CTD: Bacter 59.3 20 0.00043 29.5 4.8 55 238-296 11-65 (66)
57 PRK14295 chaperone protein Dna 59.1 5.6 0.00012 44.1 2.0 23 2-24 54-80 (389)
58 TIGR00714 hscB Fe-S protein as 58.5 7.2 0.00016 37.7 2.4 23 2-24 41-63 (157)
59 PRK04301 radA DNA repair and r 55.4 22 0.00047 38.1 5.7 57 238-297 5-61 (317)
60 KOG0719|consensus 53.8 8.4 0.00018 39.6 2.0 25 2-26 61-85 (264)
61 PRK01356 hscB co-chaperone Hsc 49.8 11 0.00024 36.8 2.1 20 2-21 52-71 (166)
62 PRK03578 hscB co-chaperone Hsc 46.6 14 0.00031 36.4 2.3 24 2-25 58-83 (176)
63 TIGR03835 termin_org_DnaJ term 46.0 13 0.00028 44.4 2.2 23 2-24 46-68 (871)
64 KOG0715|consensus 45.2 12 0.00026 39.8 1.8 24 1-24 86-109 (288)
65 KOG1583|consensus 45.0 3 6.5E-05 43.8 -2.7 61 2-65 173-241 (330)
66 TIGR02236 recomb_radA DNA repa 44.7 43 0.00092 35.6 5.9 53 241-296 1-53 (310)
67 PRK05014 hscB co-chaperone Hsc 44.7 13 0.00028 36.5 1.7 19 2-20 53-71 (171)
68 KOG0691|consensus 43.9 15 0.00032 39.3 2.1 23 2-24 50-72 (296)
69 PTZ00035 Rad51 protein; Provis 42.3 46 0.001 36.2 5.7 57 242-301 26-82 (337)
70 KOG3192|consensus 41.5 15 0.00033 35.4 1.6 20 2-21 60-79 (168)
71 PRK01773 hscB co-chaperone Hsc 40.2 18 0.0004 35.6 2.0 20 2-21 54-73 (173)
72 PF12165 DUF3594: Domain of un 38.6 9.2 0.0002 35.5 -0.3 34 7-44 18-60 (137)
73 PRK00294 hscB co-chaperone Hsc 38.2 20 0.00042 35.3 1.9 20 2-21 56-75 (173)
74 PRK12766 50S ribosomal protein 36.7 90 0.0019 32.2 6.3 55 239-296 3-57 (232)
75 PF11731 Cdd1: Pathogenicity l 36.3 32 0.00069 30.5 2.7 38 239-278 12-49 (93)
76 PF02404 SCF: Stem cell factor 35.7 12 0.00027 38.8 0.0 54 9-77 192-245 (273)
77 KOG2002|consensus 35.3 30 0.00065 42.2 3.1 7 5-11 315-321 (1018)
78 KOG0526|consensus 33.3 35 0.00075 39.0 3.0 14 489-502 465-478 (615)
79 TIGR02239 recomb_RAD51 DNA rep 33.2 83 0.0018 33.9 5.8 54 242-298 4-57 (316)
80 KOG1189|consensus 31.6 33 0.00072 40.7 2.6 13 625-637 928-940 (960)
81 TIGR02238 recomb_DMC1 meiotic 31.5 88 0.0019 33.7 5.7 56 243-301 5-60 (313)
82 PRK02515 psbU photosystem II c 30.7 93 0.002 29.3 4.9 50 239-298 61-110 (132)
83 TIGR00596 rad1 DNA repair prot 29.5 85 0.0018 38.3 5.7 52 241-297 759-810 (814)
84 PF12826 HHH_2: Helix-hairpin- 29.1 90 0.002 25.3 4.1 51 242-296 6-56 (64)
85 PRK01216 DNA polymerase IV; Va 29.1 1.4E+02 0.003 32.7 6.7 61 228-295 169-229 (351)
86 PLN03187 meiotic recombination 28.7 87 0.0019 34.3 5.1 62 235-299 27-88 (344)
87 PHA03102 Small T antigen; Revi 28.5 24 0.00052 34.1 0.7 23 2-24 48-70 (153)
88 COG5406 Nucleosome binding fac 28.4 38 0.00082 39.5 2.3 13 625-637 978-990 (1001)
89 PF07225 NDUF_B4: NADH-ubiquin 27.9 19 0.00041 33.6 -0.1 61 9-71 34-101 (125)
90 PHA03420 E4 protein; Provision 27.6 66 0.0014 29.7 3.2 24 463-486 107-130 (137)
91 PRK14133 DNA polymerase IV; Pr 27.5 1.4E+02 0.003 32.3 6.4 60 229-296 165-224 (347)
92 PF14991 MLANA: Protein melan- 26.6 20 0.00042 32.8 -0.3 20 54-75 32-51 (118)
93 KOG2002|consensus 25.9 45 0.00097 40.7 2.4 16 184-199 406-421 (1018)
94 TIGR01954 nusA_Cterm_rpt trans 24.8 1.7E+02 0.0036 21.9 4.7 47 247-296 1-47 (50)
95 PRK03348 DNA polymerase IV; Pr 24.6 1.6E+02 0.0034 33.4 6.4 58 238-300 179-236 (454)
96 PF06514 PsbU: Photosystem II 24.4 62 0.0013 28.6 2.4 56 239-304 23-78 (93)
97 PRK03352 DNA polymerase IV; Va 24.3 1.3E+02 0.0028 32.5 5.5 57 238-299 176-232 (346)
98 PRK02406 DNA polymerase IV; Va 23.9 1.7E+02 0.0036 31.6 6.3 63 229-299 160-222 (343)
99 PF04889 Cwf_Cwc_15: Cwf15/Cwc 23.9 54 0.0012 34.1 2.3 20 623-642 141-162 (244)
100 KOG1832|consensus 22.8 48 0.001 40.2 1.9 19 422-440 1294-1313(1516)
101 KOG0718|consensus 22.3 54 0.0012 37.0 2.0 22 2-23 57-78 (546)
102 KOG2321|consensus 21.7 48 0.001 38.3 1.5 27 612-638 549-575 (703)
103 PRK01172 ski2-like helicase; P 21.7 39 0.00085 40.1 0.9 57 367-426 611-667 (674)
104 cd03586 PolY_Pol_IV_kappa DNA 21.4 1.9E+02 0.004 30.9 5.9 63 229-299 163-225 (334)
105 PF12353 eIF3g: Eukaryotic tra 21.3 43 0.00094 31.3 0.9 21 15-35 49-73 (128)
106 PF12322 T4_baseplate: T4 bact 21.1 6.6E+02 0.014 25.4 9.4 67 365-436 110-187 (205)
107 PLN03186 DNA repair protein RA 20.8 1.5E+02 0.0034 32.3 5.2 55 240-297 27-83 (342)
108 PRK03858 DNA polymerase IV; Va 20.1 1.7E+02 0.0037 32.2 5.4 55 238-297 172-226 (396)
No 1
>KOG4434|consensus
Probab=100.00 E-value=2.3e-64 Score=516.04 Aligned_cols=249 Identities=51% Similarity=0.854 Sum_probs=234.8
Q ss_pred HHHhhccCCCCCHHHHHHHHhcccccccccCCCCccCCchhhHHHHHHHhCCCCCcCCCCCCCCcchhHHHHHHHHHHhc
Q psy12216 89 YYAFFQITPHMALKRVLMILGASLEFDRRFNSEIIERPSDEIEVPQLIRQIPNLGEKNRERPLYHKYSIKARALIYAHLS 168 (646)
Q Consensus 89 F~~~~~l~~~~s~~~lL~iLS~A~EF~~~~~~~i~vR~~E~~eL~~L~~~lp~~~~k~k~~~~~~~~~~Ka~lLLqAhLs 168 (646)
|+||++.+|+|.++++|.+||.|.||+..+|+++..|+.++.++.+|+++++.++.+.++.+...+++.|+++||+|||+
T Consensus 1 Y~YFi~kTp~M~~kR~imVLags~EFdkqyNk~iqeR~tDn~evP~Lirqi~~vN~K~kE~PL~~pYslKaRvlLhahLs 80 (520)
T KOG4434|consen 1 YYYFINRTPRMEIKRMIMVLAGSFEFDKQYNKEIQERETDNYEVPRLIRQIAGVNDKGKEQPLSQPYSLKARVLLHAHLS 80 (520)
T ss_pred CeeeeccCchhHHHHHHHHHhcccccChhhchhhhccCCcchHHHHHHHHcccccccccCCCccCchhHHHHHHHHHHHh
Confidence 34678999999999999999999999999999999999999999999999999998888899999999999999999999
Q ss_pred CCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHHHHHHhccCCCCCCcccCCCCC
Q psy12216 169 NMQLTSETLEADRMYIVKKCPYLLQEMVTCISQLILLAYAQRVPRLIHIETLENVMKLCPMIVQGMWDFKNPLLQLPYVT 248 (646)
Q Consensus 169 Ri~Lp~~~L~~D~~~VL~~a~RLl~AmidIa~~~g~la~~~~w~~~p~L~~~l~~l~L~QmIvQa~W~~~spLlQLPh~~ 248 (646)
|++|++.+|..|+.||+.+||||++.|++++.++..+||+|+-+++|++.+..|||.|++|++||+|.+.||||||||++
T Consensus 81 Rmpl~~dtLEeDqqfiikkcp~lvqEMVnc~~qLi~May~r~~~r~psiet~eNcmKlspM~vQgLwqfkSPLLQLPHit 160 (520)
T KOG4434|consen 81 RMPLESDTLEEDQQFIIKKCPRLVQEMVNCSQQLIVMAYSRHTRRIPSIETFENCMKLSPMFVQGLWQFKSPLLQLPHIT 160 (520)
T ss_pred cCCCChhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccccCccHHHHHHHHhccHHHHHHHHHhcChhhcCCccc
Confidence 99999989999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccCCCCHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHccCCceeEEeeeeecCCCCCcccCCCCeEEEEE
Q psy12216 249 DDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMPYVDLHVQPEVIDDEATTEYTAGAIITVTC 328 (646)
Q Consensus 249 ~e~l~~le~~k~~i~tl~~L~~l~~~er~~LL~~ls~~q~~ev~~vl~~~P~L~I~a~~~V~gEed~~~It~g~ivtL~V 328 (646)
++.++++.
T Consensus 161 ednL~~~~------------------------------------------------------------------------ 168 (520)
T KOG4434|consen 161 EDNLQHLR------------------------------------------------------------------------ 168 (520)
T ss_pred hHHHHHHh------------------------------------------------------------------------
Confidence 88665540
Q ss_pred EEEEecCCCccCCccccccccccccCCCccccccCCCCceecCCCCCcCccceEEEeecccccccHHHHHhcChHHHhhh
Q psy12216 329 TLMRKPMSVLFGDDTIKVQFLEPSKEGEGEIEEEEKPNGTITPVLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSV 408 (646)
Q Consensus 329 kL~R~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~qlPh~~ee~~~~i~~~k~~i~~~~~l~~l~~eeRr~l 408 (646)
++++|+|||+|+.|..+.||+|
T Consensus 169 ----------------------------------------------------------KKr~vks~qdla~lk~e~rr~l 190 (520)
T KOG4434|consen 169 ----------------------------------------------------------KKRKVKSCQDLAVLKAETRRSL 190 (520)
T ss_pred ----------------------------------------------------------hhcccccHHHHhhcCHHHHHHH
Confidence 1234678999999999999999
Q ss_pred hccCChHhHHHHHHHhcCCCceEEEEEEEEccCCccccccccccccccccCCCCCcccccCceEEEEEEEEecCCccc
Q psy12216 409 VKFMNDEQYSDMLKVLGNMPYVDLHVQPEVIDDEATTEYTAGAIITPEVIDDEATTEYTAGAIITVTCTLMRKPMSVL 486 (646)
Q Consensus 409 L~~l~~~~~~dv~~v~~~~P~i~l~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~ivt~~v~l~r~~~~~~ 486 (646)
|++|++++|++||.|||+||+|+|+++|.|+|| ||+++||+||||||+|||+|++|.++
T Consensus 191 L~~LsdeeYe~vM~VLg~mP~~~~~ik~~V~dd-------------------ed~n~~TaG~vVTv~Vtl~R~~l~d~ 249 (520)
T KOG4434|consen 191 LRSLSDEEYEDVMVVLGMMPRLQIEIKTVVEDD-------------------EDKNELTAGCVVTVKVTLRRSRLIDP 249 (520)
T ss_pred HHhcchHHHHHHHHHHccCcceEEEeeEEEecC-------------------CcccceeeeeEEEEEEEEEeccccCh
Confidence 999999999999999999999999999998876 89999999999999999999999986
No 2
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=100.00 E-value=3.4e-51 Score=428.89 Aligned_cols=331 Identities=23% Similarity=0.278 Sum_probs=279.6
Q ss_pred ChhhhHhhhccCHHHHHhHHHhCCCCCCCccceeeccccchhccCCCeEEEeeeehhhcccccchhhhhhhcccccccCc
Q psy12216 1 MKLTKAYQALTDEESRRNFEKYGNPDGPGAMSFGIALPSYIVEKENSVWVLGLYALVFMVALPTAVGMWWYKSIRYTGDK 80 (646)
Q Consensus 1 i~ItKAYkaLTDe~~R~N~ekYGnPDGpq~~s~GIALP~wlve~~n~~~VL~~Y~llfgvvLP~~Vg~ww~~s~kyt~~g 80 (646)
+.|||||++|||+..|+||.+||||||||.+++|||||+|||++++++|.+++|+++||++||++|||||+++|.||++|
T Consensus 147 ~~ItkAY~~lTd~k~renyl~yGtPd~pQhts~gIAlPk~iv~se~s~y~~v~Y~lllGv~LPy~v~rwW~~~r~ytk~g 226 (610)
T COG5407 147 KTITKAYGLLTDKKRRENYLNYGTPDSPQHTSEGIALPKVIVRSERSMYAFVMYSLLLGVFLPYWVYRWWREIRDYTKVG 226 (610)
T ss_pred HHHHHHHHhhhhHHHHHHHHhcCCCCCCccccceeecchheecCCCCceeHHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhhccCCCCCHHHHHHHHhcccccccccCCCCccCCchhhHHHHHHHhCCCCCcCCCCCCCCcchhHHHH
Q psy12216 81 VLLETINFYYAFFQITPHMALKRVLMILGASLEFDRRFNSEIIERPSDEIEVPQLIRQIPNLGEKNRERPLYHKYSIKAR 160 (646)
Q Consensus 81 V~~eT~~~F~~~~~l~~~~s~~~lL~iLS~A~EF~~~~~~~i~vR~~E~~eL~~L~~~lp~~~~k~k~~~~~~~~~~Ka~ 160 (646)
|++.||.+|+ .++....|...||.+||.|.||.+ + .|. .|..-..
T Consensus 227 vh~vT~~~f~--~~~~~SlTlDelLslfasskElt~-----~----------------~pk------------~pk~~~e 271 (610)
T COG5407 227 VHFVTMEMFY--ERIDGSLTLDELLSLFASSKELTR-----M----------------NPK------------GPKCTLE 271 (610)
T ss_pred eeeeeHHHHH--HhhcccchHHHHHHHHhhhHHHHH-----h----------------CCC------------CCchhHH
Confidence 9999999997 667778999999999999999982 1 110 0001123
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHHHHHHhccCC-CCC
Q psy12216 161 ALIYAHLSNMQLTSETLEADRMYIVKKCPYLLQEMVTCISQLILLAYAQRVPRLIHIETLENVMKLCPMIVQGMWD-FKN 239 (646)
Q Consensus 161 lLLqAhLsRi~Lp~~~L~~D~~~VL~~a~RLl~AmidIa~~~g~la~~~~w~~~p~L~~~l~~l~L~QmIvQa~W~-~~s 239 (646)
-||+.||.|..-.. +. ...|+.++.-|++|+++||+.+++ +..+.+.+.+.|||+||++- ...
T Consensus 272 kll~dhlnr~~s~~--fn--~~ri~s~~~~ll~aLL~ia~~F~f------------~~~~~g~~n~~q~iVqAiPld~~f 335 (610)
T COG5407 272 KLLGDHLNRARSVE--FN--EYRIKSNVEGLLGALLRIASNFAF------------PLKECGKENKGQYIVQAIPLDHLF 335 (610)
T ss_pred HHHHHHHhHhhccc--ch--heehhhhhHHHHHHHHHHHhhccC------------CchhhccchhhheeeEeccCCCCc
Confidence 49999999987543 33 667999999999999999987654 45688999999999999985 479
Q ss_pred CcccCCCCCHHHHHHHhhhccCCCCHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHccCCceeE-EeeeeecCCCCCccc
Q psy12216 240 PLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMPYVDL-HVQPEVIDDEATTEY 318 (646)
Q Consensus 240 pLlQLPh~~~e~l~~le~~k~~i~tl~~L~~l~~~er~~LL~~ls~~q~~ev~~vl~~~P~L~I-~a~~~V~gEed~~~I 318 (646)
+++||||+..+.++.+ .-+.+.++..|..+.++..+..|.+++..++.++..+++.+|++.| .+.|.|.|+ ..|
T Consensus 336 ~ilQlp~~d~E~~~~~--s~r~I~~~~~~~sL~~~~~g~vl~n~~~~~l~e~~~va~gIPr~~~~~a~flv~~d---~~i 410 (610)
T COG5407 336 RILQLPRSDVEYAQRV--SLRLIEGMKAIGSLIAKRYGNVLKNLVVLELMEIQAVADGIPRYFLLQAPFLVFED---LFI 410 (610)
T ss_pred hhhcccchhHHHHHHh--hhhhhhhhhhHhhHHHHHHhhhhhhHHHHHHHHHHHHhcCCCceEEEecceeeccc---cee
Confidence 9999999999988877 3346889999999999999999999999999999999999999997 888888775 689
Q ss_pred CCCCeEEEEEE--EEEecCCCccCCc-ccccc-----ccccccCCCccccccCCCCceecCCCCCcCccceEEEeec
Q psy12216 319 TAGAIITVTCT--LMRKPMSVLFGDD-TIKVQ-----FLEPSKEGEGEIEEEEKPNGTITPVLPYVTDDHLKHFICK 387 (646)
Q Consensus 319 t~g~ivtL~Vk--L~R~~~~~~~~~~-~~~~~-----f~~~~~~~~~~~~~~~~~~~~~~~qlPh~~ee~~~~i~~~ 387 (646)
|+|+...+.++ +.-...|+..-+. ..+-+ |+..+.+.+.-+++.+..+++.+|-||.-....||..+.+
T Consensus 411 t~~s~~~vslk~~~g~~~~pe~~ts~~~~~n~~e~~dfe~~~~~~~ai~~d~~~~pys~Ap~f~t~~~~~w~~~v~~ 487 (610)
T COG5407 411 TEKSKERVSLKGYLGAIPGPEHRTSALNVYNQVEISDFEASVIETGAIKNDSSDSPYSEAPDFATRNDSEWAVRVAK 487 (610)
T ss_pred cccceeeEEEEEEeccccCCcccccccccccccChHHHhhhccCccccccCCCCCCcccCcccccccCcceEEEeec
Confidence 99987654444 4444444433322 11111 8888899999999999999999999998888889877554
No 3
>PF02889 Sec63: Sec63 Brl domain; InterPro: IPR004179 This domain was named after the yeast Sec63 (or NPL1) (also known as the Brl domain) protein in which it was found. This protein is required for assembly of functional endoplasmic reticulum translocons [, ]. Other yeast proteins containing this domain include pre-mRNA splicing helicase BRR2, HFM1 protein and putative helicases. ; PDB: 3IM2_A 3IM1_A 3HIB_A 2Q0Z_X.
Probab=100.00 E-value=3e-39 Score=341.63 Aligned_cols=255 Identities=29% Similarity=0.433 Sum_probs=186.7
Q ss_pred cchhhhhhhcccccccCcchHHHHHHHHHhhccCCCCCHHHHHHHHhcccccccccCCCCccCCchhhHHHHHHHhCCCC
Q psy12216 63 PTAVGMWWYKSIRYTGDKVLLETINFYYAFFQITPHMALKRVLMILGASLEFDRRFNSEIIERPSDEIEVPQLIRQIPNL 142 (646)
Q Consensus 63 P~~Vg~ww~~s~kyt~~gV~~eT~~~F~~~~~l~~~~s~~~lL~iLS~A~EF~~~~~~~i~vR~~E~~eL~~L~~~lp~~ 142 (646)
|+.+|+.. ++.+|.++||++|+ ..+++++++.+||++||.|.||+ ++++|++|+.+|.+|.+.+|+.
T Consensus 1 pT~lG~i~------s~yyi~~~T~~~~~--~~l~~~~~~~~il~~l~~a~EF~-----~i~~R~~E~~~l~~l~~~~~~~ 67 (314)
T PF02889_consen 1 PTELGRIM------SRYYISFETMENFF--ESLKEDMSEKDILELLSSAEEFS-----EIPVRHNEKKELNELNKKIPYP 67 (314)
T ss_dssp ---CGC--------------HHHHHHHH--HH--TT--HHHHHHHHHTSGGGC-----CS---TTHHHHHHHHHCCSSS-
T ss_pred CCHHHHHH------HHhcccHHHHHHHH--HHCCCCCCHHHHHHHHcCcHhHh-----hCccchhhHHHHHHHHHhcccC
Confidence 55566653 23349999999997 45889999999999999999999 9999999999999999988763
Q ss_pred CcCCCCCCCCcchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhccCcccchHHHHHH
Q psy12216 143 GEKNRERPLYHKYSIKARALIYAHLSNMQLTSETLEADRMYIVKKCPYLLQEMVTCISQLILLAYAQRVPRLIHIETLEN 222 (646)
Q Consensus 143 ~~k~k~~~~~~~~~~Ka~lLLqAhLsRi~Lp~~~L~~D~~~VL~~a~RLl~AmidIa~~~g~la~~~~w~~~p~L~~~l~ 222 (646)
.. .....+++.||++||||||+|+++++++|.+|+.+|+++++||++||++||+.+|| +.++.+
T Consensus 68 ~~----~~~~~~~~~K~~~Llqa~l~r~~l~~~~l~~D~~~i~~~~~Rll~a~~ei~~~~~~------------~~~~~~ 131 (314)
T PF02889_consen 68 IK----KEKINDPHIKAFVLLQAHLSRIPLPDSSLRQDLKYILDNAPRLLRAMIEIALEKGW------------LSTALN 131 (314)
T ss_dssp -S----TS-TTSHHHHHHHHHHHHHCT-----HHHHHHHHHHHHHHHHHHHHHHHHHHHTTB------------CCHHHH
T ss_pred cc----ccccccHHHHHHHHHHHhccCCCcCchhHHhhHHhhhhhhHHHHHHHHHHHHhccc------------HHHHHH
Confidence 31 23456888999999999999999998999999999999999999999999977554 668999
Q ss_pred HHHHHHHHHhccCCCCCCcccCCCCCHHHHHHHhhhccCCCCHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHccCCcee
Q psy12216 223 VMKLCPMIVQGMWDFKNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMPYVD 302 (646)
Q Consensus 223 ~l~L~QmIvQa~W~~~spLlQLPh~~~e~l~~le~~k~~i~tl~~L~~l~~~er~~LL~~ls~~q~~ev~~vl~~~P~L~ 302 (646)
+|+|+|||+||+|+..+||+|||||+++.++++. +.++.++++|+++++.++..+++ .++.++.++.+++++||.++
T Consensus 132 ~l~l~q~i~q~~w~~~~~L~Qlp~i~~~~~~~l~--~~~i~~l~~l~~~~~~e~~~ll~-~~~~~~~~i~~~~~~~P~~~ 208 (314)
T PF02889_consen 132 ALELSQCIVQALWDSDSPLLQLPHIGEESLKKLE--KRGIKTLQDLRDLSPEELEELLN-RNPPFGKEILEVASRIPRLE 208 (314)
T ss_dssp HHHHHHHHHHTS-TTS-GGGGSTT--HHHHHHHH--HTT--SHHHHHHS-HHHHHHHH--S-HHHHHHHHHHHCCS--EE
T ss_pred HHHHHHHHHhhcCCCCChhhcCCCCCHHHHHHHh--ccCCCcHHHHhhCCHHHHHHHHh-hhhhhHHHHHHHHHHCCCEE
Confidence 9999999999999999999999999999999995 46789999999999999999986 46799999999999999999
Q ss_pred EEeeeeecCCCCCcccCCCCeEEEEEEEEEecCCCccCCccccccccccccCCCccccccCCCCceecCCCCCcCccceE
Q psy12216 303 LHVQPEVIDDEATTEYTAGAIITVTCTLMRKPMSVLFGDDTIKVQFLEPSKEGEGEIEEEEKPNGTITPVLPYVTDDHLK 382 (646)
Q Consensus 303 I~a~~~V~gEed~~~It~g~ivtL~VkL~R~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~qlPh~~ee~~~ 382 (646)
|++.+.+.++ . +. ..+++.|++++.+..+ .+||+.+.+.||
T Consensus 209 i~~~~~~~~~---~-~~--~~~~v~v~i~~~~~~~---------------------------------~~~~~~k~~~~~ 249 (314)
T PF02889_consen 209 IKASVQVIDE---E-IV--PILTVQVSITRKFSWS---------------------------------DRFPKKKKESWW 249 (314)
T ss_dssp EEEEETTCCG---E-EC--SEEEEEEEEEESSS-S---------------------------------ST-SS--B--EE
T ss_pred EEEEEecccc---c-cC--CcEEEEEEEEcccccc---------------------------------cCCCCCCcccEE
Confidence 9987766554 1 22 5689999999977541 188999999999
Q ss_pred EEeecc
Q psy12216 383 HFICKK 388 (646)
Q Consensus 383 ~i~~~k 388 (646)
.++++.
T Consensus 250 ~~v~~~ 255 (314)
T PF02889_consen 250 LFVGDS 255 (314)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 998864
No 4
>smart00611 SEC63 Domain of unknown function in Sec63p, Brr2p and other proteins.
Probab=100.00 E-value=1.5e-38 Score=336.34 Aligned_cols=236 Identities=30% Similarity=0.441 Sum_probs=205.8
Q ss_pred ccchhhhhhhcccccccCcchHHHHHHHHHhhccCCCCCHHHHHHHHhcccccccccCCCCccCCchhhHHHHHHHhCCC
Q psy12216 62 LPTAVGMWWYKSIRYTGDKVLLETINFYYAFFQITPHMALKRVLMILGASLEFDRRFNSEIIERPSDEIEVPQLIRQIPN 141 (646)
Q Consensus 62 LP~~Vg~ww~~s~kyt~~gV~~eT~~~F~~~~~l~~~~s~~~lL~iLS~A~EF~~~~~~~i~vR~~E~~eL~~L~~~lp~ 141 (646)
-|+.+|+.. +..||.++|+++|+ ..++++++..++|++||.|.||. ++++|++|+.++.+|.+.+|.
T Consensus 3 ~~T~~Gria------s~yYI~~~T~~~f~--~~l~~~~~~~~lL~~ls~a~Ef~-----~i~vR~~E~~~l~~l~~~~~~ 69 (312)
T smart00611 3 WPTDLGRIA------SYYYISYTTIRTFN--ELLKPKMTTKDLLRILSMSSEFD-----QIPVRHEEDLLLEELAEKLPI 69 (312)
T ss_pred ccchhHHHH------hhhccChHHHHHHH--HhcCCCCCHHHHHHHHhCcHhhC-----CCCCCccHHHHHHHHHHhCCc
Confidence 355555554 12269999999997 56899999999999999999999 999999999999999999887
Q ss_pred CCcCCCCCCCCcchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhccCcccchHHHHH
Q psy12216 142 LGEKNRERPLYHKYSIKARALIYAHLSNMQLTSETLEADRMYIVKKCPYLLQEMVTCISQLILLAYAQRVPRLIHIETLE 221 (646)
Q Consensus 142 ~~~k~k~~~~~~~~~~Ka~lLLqAhLsRi~Lp~~~L~~D~~~VL~~a~RLl~AmidIa~~~g~la~~~~w~~~p~L~~~l 221 (646)
... .....+++.|+++||||||+|+++++++|.+|+.+|+++++||++||+|||+.+|| +.+++
T Consensus 70 ~~~----~~~~~~~~~K~~lLLqa~i~r~~l~~~~l~~D~~~vl~~a~rll~al~di~~~~~~------------~~~~~ 133 (312)
T smart00611 70 RLE----NPSLDDPHVKANLLLQAHLSRLKLPSFALESDTVYVLQNAGRLLQAMVDIALERGW------------LSTAL 133 (312)
T ss_pred CcC----CCCCCCchHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcch------------HHHHH
Confidence 432 12356899999999999999999998999999999999999999999999988776 67899
Q ss_pred HHHHHHHHHHhccCCCCCCcccCCCCCHHHHHHHhhhccCCCCHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHccCCce
Q psy12216 222 NVMKLCPMIVQGMWDFKNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMPYV 301 (646)
Q Consensus 222 ~~l~L~QmIvQa~W~~~spLlQLPh~~~e~l~~le~~k~~i~tl~~L~~l~~~er~~LL~~ls~~q~~ev~~vl~~~P~L 301 (646)
++|+|+|||+||+|+.++||+|||||+.+.++++. +.++.++.+|.++++++++.+++ +++.+++++.++|++||+|
T Consensus 134 ~~l~L~q~i~q~~w~~~~~L~Qlp~i~~~~~~~l~--~~~i~s~~~l~~~~~~~~~~ll~-~~~~~~~~i~~~~~~~P~l 210 (312)
T smart00611 134 NALNLSQMIIQALWPTDSPLLQLPHLPEEILKRLE--KKKVLSLEDLLELEDEERGELLG-LLDAEGERVYKVLSRLPKL 210 (312)
T ss_pred HHHHHHHHHHHhhCCCCCccccCCCCCHHHHHHHH--hCCCCCHHHHHhcCHHHHHHHHc-CCHHHHHHHHHHHHhCCcc
Confidence 99999999999999999999999999999999994 45789999999999999999885 7789999999999999999
Q ss_pred eEEeeeeecCCCCCcccCCCCeEEEEEEEEEec
Q psy12216 302 DLHVQPEVIDDEATTEYTAGAIITVTCTLMRKP 334 (646)
Q Consensus 302 ~I~a~~~V~gEed~~~It~g~ivtL~VkL~R~~ 334 (646)
+|++. |.+. ..++.+..++|++++++.+
T Consensus 211 ~v~~~--~~~~---~~~~~~~~~~i~~~~~~~~ 238 (312)
T smart00611 211 NIEIS--LEPI---TRTVLGVEVTLTVDLTWDD 238 (312)
T ss_pred eeEEE--EcCC---cccccCceEEEEEEEEEcc
Confidence 99865 4443 2355788899999998853
No 5
>KOG0721|consensus
Probab=99.97 E-value=3.4e-34 Score=278.74 Aligned_cols=87 Identities=63% Similarity=1.032 Sum_probs=85.2
Q ss_pred ChhhhHhhhccCHHHHHhHHHhCCCCCCCccceeeccccchhccCCCeEEEeeeehhhcccccchhhhhhhcccccccCc
Q psy12216 1 MKLTKAYQALTDEESRRNFEKYGNPDGPGAMSFGIALPSYIVEKENSVWVLGLYALVFMVALPTAVGMWWYKSIRYTGDK 80 (646)
Q Consensus 1 i~ItKAYkaLTDe~~R~N~ekYGnPDGpq~~s~GIALP~wlve~~n~~~VL~~Y~llfgvvLP~~Vg~ww~~s~kyt~~g 80 (646)
+.|+|||+||||+++|+|||+||||||||++|+|||||+|||+.+|+++||++|+++||++||++||+|||+|++||+++
T Consensus 143 ~~I~KAY~aLTD~~sreN~ekYG~PDGpq~~s~GIALPk~Ivd~~~s~~vl~~y~l~f~vilp~~v~~ww~rs~~yt~d~ 222 (230)
T KOG0721|consen 143 EAIAKAYQALTDKKSRENWEKYGNPDGPQATSFGIALPKWIVDKEGSPGVLGFYGLVFGVILPVFVGRWWYRSRGYTGDG 222 (230)
T ss_pred HHHHHHHHHhcchhhHHHHHHhCCCCCccchhhHhhhHHHHHhcCCCchHHHHHHHHHHhHhHHHHHHHHHhhhcccCCc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHH
Q psy12216 81 VLLETIN 87 (646)
Q Consensus 81 V~~eT~~ 87 (646)
|++.|++
T Consensus 223 V~~~T~~ 229 (230)
T KOG0721|consen 223 VHFVTTQ 229 (230)
T ss_pred eEEeecc
Confidence 9999975
No 6
>KOG0951|consensus
Probab=99.94 E-value=9.2e-28 Score=276.18 Aligned_cols=260 Identities=17% Similarity=0.223 Sum_probs=230.2
Q ss_pred EeeeehhhcccccchhhhhhhcccccccCcchHHHHHHHHHhhccCCCCCHHHHHHHHhcccccccccCCCCccCCchhh
Q psy12216 51 LGLYALVFMVALPTAVGMWWYKSIRYTGDKVLLETINFYYAFFQITPHMALKRVLMILGASLEFDRRFNSEIIERPSDEI 130 (646)
Q Consensus 51 L~~Y~llfgvvLP~~Vg~ww~~s~kyt~~gV~~eT~~~F~~~~~l~~~~s~~~lL~iLS~A~EF~~~~~~~i~vR~~E~~ 130 (646)
|+.|.---|++-|+-+|+... ..+|+|.||+.|+ ..|.+.|+..+++.++|.|.||+ .+.+|.+|..
T Consensus 794 li~yd~~s~~~~~telg~ias------~yyi~~~s~~~yn--~~L~~~~~~i~lfrifs~seEfk-----~~svr~~ek~ 860 (1674)
T KOG0951|consen 794 LIKYDRKSGAIQATELGRIAS------SYYITHGSMATYN--ELLKETMSEIDLFRIFSKSEEFK-----YVSVREEEKM 860 (1674)
T ss_pred ccccccccCcccchhhccccc------eeeeecchHHHHH--hhhhhhhccchhhhhhhhccccc-----cCCccHHHHH
Confidence 567888899999999999973 4456666999998 67999999999999999999999 9999999999
Q ss_pred HHHHHHHhCCCCCcCCCCCCCCcchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcc
Q psy12216 131 EVPQLIRQIPNLGEKNRERPLYHKYSIKARALIYAHLSNMQLTSETLEADRMYIVKKCPYLLQEMVTCISQLILLAYAQR 210 (646)
Q Consensus 131 eL~~L~~~lp~~~~k~k~~~~~~~~~~Ka~lLLqAhLsRi~Lp~~~L~~D~~~VL~~a~RLl~AmidIa~~~g~la~~~~ 210 (646)
+|++|....|++. +...++|..|+++|||+|+|++.+..++|..|+.||-+++.|++|||++|+...||
T Consensus 861 el~~l~~~vpIpi-----re~l~~p~akinvllq~yiS~lk~eG~al~~dmv~i~q~agRl~Ra~fei~l~rgw------ 929 (1674)
T KOG0951|consen 861 ELAKLLERVPIPI-----RENLDEPSAKINVLLQSYISQLKLEGFALTSDMVYITQSAGRLFRALFEIVLKRGW------ 929 (1674)
T ss_pred HhhhhcccCCcCc-----hhccccchHHHHHHHHHHHhhcccccceeeeeEEEeccchHHHHHHHHHHHhhcCc------
Confidence 9999999999876 34557899999999999999999999999999999999999999999999977655
Q ss_pred CcccchHHHHHHHHHHHHHHHhccCCCCCCcccCCCCCHHHHHHHhhhccCCCCHHHHHcCCHHHHHHHHhcCCHHHHHH
Q psy12216 211 VPRLIHIETLENVMKLCPMIVQGMWDFKNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSD 290 (646)
Q Consensus 211 w~~~p~L~~~l~~l~L~QmIvQa~W~~~spLlQLPh~~~e~l~~le~~k~~i~tl~~L~~l~~~er~~LL~~ls~~q~~e 290 (646)
.+.+..++.+|+|+.+++|+.+.||+|+|+++.+++++++. +...+..+.++++.+.+.+++ .+..+..
T Consensus 930 ------~~~~~~~l~~ck~v~~r~w~~~~plrqf~~~~~ev~~~lE~---k~~~~~r~~~l~~~elg~lI~--~~k~G~~ 998 (1674)
T KOG0951|consen 930 ------AGLAQMALNLCKMVEKRMWPTQTPLRQFKGCPKEVLRRLEK---KELPWGRYYDLDPAELGELIG--VPKMGKP 998 (1674)
T ss_pred ------chHHHHHHHhHhHhhhhcccccCchhhcCCCCHHHHHHHHh---ccCcchhhhccCHHHHHHHhc--CcccChh
Confidence 66789999999999999999999999999999999999975 457899999999999999887 5778889
Q ss_pred HHHHHccCCceeEEeeeeecCCCCCcccCCCCeEEEEEEEEEecCCCccCCcccccc---ccccccCCCcc
Q psy12216 291 MLKVLGNMPYVDLHVQPEVIDDEATTEYTAGAIITVTCTLMRKPMSVLFGDDTIKVQ---FLEPSKEGEGE 358 (646)
Q Consensus 291 v~~vl~~~P~L~I~a~~~V~gEed~~~It~g~ivtL~VkL~R~~~~~~~~~~~~~~~---f~~~~~~~~~~ 358 (646)
+..++.+||++.+.+. | ++|+.+ .+.+.+.++ ++|.||.++|+. ||+++||.+|+
T Consensus 999 l~~~~~~fpk~s~~~~--v------qpitr~-~~~~~l~i~----~~f~wd~~vh~~~e~F~i~ved~dge 1056 (1674)
T KOG0951|consen 999 LHLFIRQFPKLSVSAH--V------QPITRS-VYRVELTIT----PDFDWDDKVHGSVEPFWIIVEDTDGE 1056 (1674)
T ss_pred HHHHHHhcccceeeee--e------eeeeee-EEEEEEEEe----ecccchhhhcccccceEEEEEccCcc
Confidence 9999999999999875 4 456665 454444443 689999999999 99999999997
No 7
>KOG0952|consensus
Probab=99.76 E-value=9.6e-19 Score=200.67 Aligned_cols=240 Identities=16% Similarity=0.146 Sum_probs=192.2
Q ss_pred eEEEeeeehhhcccccchhhhhhhcccccccCcchHHHHHHHHHhhccCCCCCHHHHHHHHhcccccccccCCCCccCCc
Q psy12216 48 VWVLGLYALVFMVALPTAVGMWWYKSIRYTGDKVLLETINFYYAFFQITPHMALKRVLMILGASLEFDRRFNSEIIERPS 127 (646)
Q Consensus 48 ~~VL~~Y~llfgvvLP~~Vg~ww~~s~kyt~~gV~~eT~~~F~~~~~l~~~~s~~~lL~iLS~A~EF~~~~~~~i~vR~~ 127 (646)
.+.++.|...-|.+.|...||-. |..+|.++||+.|+ ...++.++..++|.++|.|.||. .|++|++
T Consensus 583 ~~qmi~~D~~t~~~~stdlGR~a------S~yYik~ETme~~n--n~~k~~~se~~iL~lis~aeEfs-----~ik~R~e 649 (1230)
T KOG0952|consen 583 KVQMIRFDERTGYLKSTDLGRVA------SNYYIKYETMETFN--NLPKSFYSEDDILALISMAEEFS-----QIKVREE 649 (1230)
T ss_pred hhheEEEecccceEcccchhhhh------hhhhhhhHHHHHHH--hcccccCCHHHHHHHHHhhHhhh-----hhhhhhh
Confidence 44678899999999999999986 46678888999997 33678999999999999999999 9999999
Q ss_pred hhhHHHHHHHhCCCCCcCCCCCCCCcchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q psy12216 128 DEIEVPQLIRQIPNLGEKNRERPLYHKYSIKARALIYAHLSNMQLTSETLEADRMYIVKKCPYLLQEMVTCISQLILLAY 207 (646)
Q Consensus 128 E~~eL~~L~~~lp~~~~k~k~~~~~~~~~~Ka~lLLqAhLsRi~Lp~~~L~~D~~~VL~~a~RLl~AmidIa~~~g~la~ 207 (646)
|..+|++|....+.... ... .+.|+++|+|+|++|..+..++|.+|..||.+++.||++||+.|++..+|
T Consensus 650 E~k~l~el~~~~~~~~~-----~~~--~~gk~nil~q~~Is~~~~~~f~L~sD~~yv~qna~ri~ralf~i~~~~~~--- 719 (1230)
T KOG0952|consen 650 EKKELKELNEDSCEKYP-----FGG--EKGKVNILLQAYISRTEVKDFSLMSDSLYVAQNAGRISRALFQIVLRQNW--- 719 (1230)
T ss_pred hHHHHHHHHhccccccc-----ccc--cchhHHHHHHhhhhccceeeeeeccCcccccccHHHHHHHHHHHHHHhCc---
Confidence 99999999887654321 111 27899999999999999999999999999999999999999999987655
Q ss_pred hccCcccchHHHHHHHHHHHHHHHhccCCCCCCcccCCCCCHHHHHHHhhhccCCCCHHHHHcCCHHHHHHHHhcCCHHH
Q psy12216 208 AQRVPRLIHIETLENVMKLCPMIVQGMWDFKNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQ 287 (646)
Q Consensus 208 ~~~w~~~p~L~~~l~~l~L~QmIvQa~W~~~spLlQLPh~~~e~l~~le~~k~~i~tl~~L~~l~~~er~~LL~~ls~~q 287 (646)
...+.+++.||+||..+||...+|+.|++.... ++ ++.+ . .|..|...+.+.++.+- +
T Consensus 720 ---------~~~~~~~l~l~k~ier~mw~~~~~l~qf~~~~~---~~-~~~~---~---~l~~L~~~~~g~~w~~~-~-- 777 (1230)
T KOG0952|consen 720 ---------HLLSNRMLNLCKRIERRMWDFFIPLKQFTLLLN---RK-ERKK---L---TLLLLRKDELGELWHNV-P-- 777 (1230)
T ss_pred ---------hHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccc---hh-hhhc---c---hHHhhhhhhhccccccC-c--
Confidence 335778999999999999999999999997655 22 2211 1 67777777778777631 1
Q ss_pred HHHHHHHHccCCceeEEeeeeecCCCCCcccCCCCeEEEEEEEEEecCCCccCCcccccc
Q psy12216 288 YSDMLKVLGNMPYVDLHVQPEVIDDEATTEYTAGAIITVTCTLMRKPMSVLFGDDTIKVQ 347 (646)
Q Consensus 288 ~~ev~~vl~~~P~L~I~a~~~V~gEed~~~It~g~ivtL~VkL~R~~~~~~~~~~~~~~~ 347 (646)
...+.+..+|.+++++.+.- ++ +=.+.+.....++|.|...+||-
T Consensus 778 --~~~k~l~~ip~v~v~a~~~p--------~t-----~~vlri~~~~~~~f~w~~~~hg~ 822 (1230)
T KOG0952|consen 778 --YGLKQLSGIPLVNVEALIQP--------IT-----RNVLRIEVAITPDFEWNDGIHGK 822 (1230)
T ss_pred --hhhhhhccCCceehhhhhcc--------ch-----hhhheeeeccCCceEEecccccc
Confidence 22888999999999875322 11 11235555566889999999988
No 8
>PRK00254 ski2-like helicase; Provisional
Probab=99.66 E-value=6e-16 Score=181.65 Aligned_cols=207 Identities=12% Similarity=0.145 Sum_probs=162.2
Q ss_pred ccccchhhhhhhcccccccCcchHHHHHHHHHh-hccCCCCCHHHHHHHHhcccccccccCCCCccCCchhhHHHHHHHh
Q psy12216 60 VALPTAVGMWWYKSIRYTGDKVLLETINFYYAF-FQITPHMALKRVLMILGASLEFDRRFNSEIIERPSDEIEVPQLIRQ 138 (646)
Q Consensus 60 vvLP~~Vg~ww~~s~kyt~~gV~~eT~~~F~~~-~~l~~~~s~~~lL~iLS~A~EF~~~~~~~i~vR~~E~~eL~~L~~~ 138 (646)
.+.|+-+|++.. ..+|.++|+..|... ..+..+++...+|.+||.|.||. .+++|++|...+..+...
T Consensus 477 ~~~~t~lG~~~s------~~~i~~~t~~~~~~~l~~~~~~~~~~~~l~~~~~~~e~~-----~~~~r~~e~~~l~~~~~~ 545 (720)
T PRK00254 477 RFIPLPLGIRTS------QLYIDPLTAKKFKDAFPKIEKNPNPLGIFQLIASTPDMT-----PLNYSRKEMEDLLDEAYE 545 (720)
T ss_pred CEeeChHHHHHH------HHhCCHHHHHHHHHHHHhhccCCCHHHHHHHhhCCcccc-----ccCcchhhHHHHHHHHHh
Confidence 467899998863 346777899999732 22233788999999999999999 899999998887744332
Q ss_pred --------CCCCCcCCCCCCCCcc--hhHHHHHHHHHHhcCCCCChhhH------HHHHHHHHHhhhHHHHHHHHHHHHH
Q psy12216 139 --------IPNLGEKNRERPLYHK--YSIKARALIYAHLSNMQLTSETL------EADRMYIVKKCPYLLQEMVTCISQL 202 (646)
Q Consensus 139 --------lp~~~~k~k~~~~~~~--~~~Ka~lLLqAhLsRi~Lp~~~L------~~D~~~VL~~a~RLl~AmidIa~~~ 202 (646)
+|... ...... ++.|+++|||+|++|++++. .+ ..|+..|++++.+|+.||++|+...
T Consensus 546 ~~~~l~~~~~~~~-----~~~~~~~~~~~k~~~ll~~~~~~~~~~~-~~~~~~~~~gd~~~~~~~~~~l~~a~~~i~~~~ 619 (720)
T PRK00254 546 MEDRLYFNIPYWE-----DYKFQKFLRAFKTAKVLLDWINEVPEGE-IVETYNIDPGDLYRILELADWLMYSLIELYKLF 619 (720)
T ss_pred hcccccccCCcch-----hhHHHHHHHHHHHHHHHHHHHcCCCHHH-HHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22210 001112 78999999999999999864 45 7899999999999999999999865
Q ss_pred HHHHhhccCcccchHHHHHHHHHHHHHHHhccCCCCCCcccCCCCCHHHHHHHhhhccCCCCHHHHHcCCHHHHHHHHhc
Q psy12216 203 ILLAYAQRVPRLIHIETLENVMKLCPMIVQGMWDFKNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKF 282 (646)
Q Consensus 203 g~la~~~~w~~~p~L~~~l~~l~L~QmIvQa~W~~~spLlQLPh~~~e~l~~le~~k~~i~tl~~L~~l~~~er~~LL~~ 282 (646)
|+. ..| ++ .+-+|+|||+||+|...+||.|+|||+...+++| -+.+..++.++..++++++..+. +
T Consensus 620 ~~~---~~~-----~~---~l~~l~~rl~~g~~~~~~~L~~ipgig~~~~~~l--~~~g~~s~~~i~~a~~~el~~~~-g 685 (720)
T PRK00254 620 EPK---QEV-----LD---YLETLHLRVKHGVREELLELMRLPMIGRKRARAL--YNAGFRSIEDIVNAKPSELLKVE-G 685 (720)
T ss_pred Ccc---hhH-----HH---HHHHHHHHHHcCCCHHHhhhhcCCCCCHHHHHHH--HHccCCCHHHHHhCCHHHHhcCC-C
Confidence 531 111 32 2338999999999999999999999999999999 44579999999999999987653 5
Q ss_pred CCHHHHHHHHHHHcc
Q psy12216 283 MNDEQYSDMLKVLGN 297 (646)
Q Consensus 283 ls~~q~~ev~~vl~~ 297 (646)
++.+-++.|.++++.
T Consensus 686 i~~~~a~~i~~~~~~ 700 (720)
T PRK00254 686 IGAKIVEGIFKHLGV 700 (720)
T ss_pred CCHHHHHHHHHHhcc
Confidence 788899999999873
No 9
>PRK02362 ski2-like helicase; Provisional
Probab=99.65 E-value=1.1e-15 Score=180.03 Aligned_cols=203 Identities=12% Similarity=0.066 Sum_probs=161.5
Q ss_pred cccchhhhhhhcccccccCcchHHHHHHHHHhhccCCC--CCHHHHHHHHhcccccccccCCCCccCCchhhHHHHHHH-
Q psy12216 61 ALPTAVGMWWYKSIRYTGDKVLLETINFYYAFFQITPH--MALKRVLMILGASLEFDRRFNSEIIERPSDEIEVPQLIR- 137 (646)
Q Consensus 61 vLP~~Vg~ww~~s~kyt~~gV~~eT~~~F~~~~~l~~~--~s~~~lL~iLS~A~EF~~~~~~~i~vR~~E~~eL~~L~~- 137 (646)
+-|+-+|++-. ..||...|+..|. ..++.. .+...+|.+||.|.||. .+++|++|...+.++..
T Consensus 487 ~~~t~lG~~~s------~~~l~~~t~~~~~--~~l~~~~~~~~~~~l~~i~~~~e~~-----~~~~r~~e~~~l~~~~~~ 553 (737)
T PRK02362 487 LEATELGHLVS------RLYIDPLSAAEII--DGLEAAKKPTDLGLLHLVCSTPDMY-----ELYLRSGDYEWLNEYLYE 553 (737)
T ss_pred EeEChHHHHHH------HhcCCHHHHHHHH--HHhhhcccCchHHHHHHhhcCcccc-----ccccChhHHHHHHHHHHh
Confidence 56899999862 3467778999997 335443 47899999999999999 89999999988888752
Q ss_pred -------hCCCCCcCCCCCCCCc--chhHHHHHHHHHHhcCCCCChhh--H---HHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy12216 138 -------QIPNLGEKNRERPLYH--KYSIKARALIYAHLSNMQLTSET--L---EADRMYIVKKCPYLLQEMVTCISQLI 203 (646)
Q Consensus 138 -------~lp~~~~k~k~~~~~~--~~~~Ka~lLLqAhLsRi~Lp~~~--L---~~D~~~VL~~a~RLl~AmidIa~~~g 203 (646)
.+|.... ..... .++.|+++|||+||+|.+++... | ..|+..+++++.+|++|+++||.. +
T Consensus 554 ~~~~~~~~~p~~~~----~~~~~~~~~~~k~~~ll~~~i~~~~~~~i~~~~~~~~gdl~~~~~~~~~l~~a~~~i~~~-~ 628 (737)
T PRK02362 554 HEDELLGDVPSEFE----DDEFEDFLSAVKTALLLEDWIDEVDEERITERYGVGPGDIRGKVETAEWLLHAAERLASE-L 628 (737)
T ss_pred cccchhccCCchhh----hhhHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHH-h
Confidence 2232110 11112 27889999999999999965321 1 568999999999999999999754 2
Q ss_pred HHHhhccCcccchHHHHHHHHHHHHHHHhccCCCCCCcccCCCCCHHHHHHHhhhccCCCCHHHHHcCCHHHHHHHHhcC
Q psy12216 204 LLAYAQRVPRLIHIETLENVMKLCPMIVQGMWDFKNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFM 283 (646)
Q Consensus 204 ~la~~~~w~~~p~L~~~l~~l~L~QmIvQa~W~~~spLlQLPh~~~e~l~~le~~k~~i~tl~~L~~l~~~er~~LL~~l 283 (646)
| +..+..+|+|+|||.||+|+..+||+|||||+...+++| .+.++.++.+|..++++++..+ +
T Consensus 629 ~------------~~~~~~~~~l~~~l~~gv~~~~~~L~~ip~i~~~~a~~l--~~~gi~s~~dl~~~~~~~l~~~---~ 691 (737)
T PRK02362 629 D------------LDLARAARELEKRVEYGVREELLDLVGLRGVGRVRARRL--YNAGIESRADLRAADKSVVLAI---L 691 (737)
T ss_pred C------------ccHHHHHHHHHHHHHhCCCHHHHHHhCCCCCCHHHHHHH--HHcCCCCHHHHHhCCHHHHHHH---H
Confidence 2 335788999999999999999999999999999999999 4478999999999999998887 4
Q ss_pred CHHHHHHHHHHHccC
Q psy12216 284 NDEQYSDMLKVLGNM 298 (646)
Q Consensus 284 s~~q~~ev~~vl~~~ 298 (646)
+++..+.|.+.+..+
T Consensus 692 g~~~~~~i~~~~~~~ 706 (737)
T PRK02362 692 GEKIAENILEQAGRR 706 (737)
T ss_pred CHHHHHHHHHHhCcc
Confidence 677888888887743
No 10
>PRK01172 ski2-like helicase; Provisional
Probab=99.58 E-value=1.6e-14 Score=168.53 Aligned_cols=198 Identities=12% Similarity=0.086 Sum_probs=156.5
Q ss_pred ccccchhhhhhhcccccccCcchHHHHHHHHHhhccCCCCCHHHHHHHHhcccccccccCCCCccCCchhhHHHHHHHhC
Q psy12216 60 VALPTAVGMWWYKSIRYTGDKVLLETINFYYAFFQITPHMALKRVLMILGASLEFDRRFNSEIIERPSDEIEVPQLIRQI 139 (646)
Q Consensus 60 vvLP~~Vg~ww~~s~kyt~~gV~~eT~~~F~~~~~l~~~~s~~~lL~iLS~A~EF~~~~~~~i~vR~~E~~eL~~L~~~l 139 (646)
.+-|+-+|++-. ..+|..+|+..|. ..++..++...+|.+||.|.|| +|+|+.++..+.++...+
T Consensus 464 ~~~~t~lG~~~s------~~~l~~~t~~~~~--~~l~~~~~~~~~l~~~~~~~e~-------~~~~~~~~~~~~~~~~~~ 528 (674)
T PRK01172 464 TLRATRLGKLTS------DLYIDPESALILK--SAFDHDYDEDLALYYISLCREI-------IPANTRDDYYAMEFLEDI 528 (674)
T ss_pred cEeECHHHHHHH------HhCCCHHHHHHHH--HHhhccCCHHHHHHHhhcCccc-------cccccchHHHHHHHHHHh
Confidence 356889999862 3467778999997 5578888999999999999998 467778887788887776
Q ss_pred CCCCcCCCCCCCCcchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhccCcccchHHH
Q psy12216 140 PNLGEKNRERPLYHKYSIKARALIYAHLSNMQLTSETLEADRMYIVKKCPYLLQEMVTCISQLILLAYAQRVPRLIHIET 219 (646)
Q Consensus 140 p~~~~k~k~~~~~~~~~~Ka~lLLqAhLsRi~Lp~~~L~~D~~~VL~~a~RLl~AmidIa~~~g~la~~~~w~~~p~L~~ 219 (646)
+... ...++.|+++|||+|++|++++. +..++..++.++++++ .+.+|++++-. .+..
T Consensus 529 ~~~~--------~~~~~~k~~~ll~~~~~~~~~~~------i~~~~~~~~g~l~~~~---~~~~~~~~a~~-----~~~~ 586 (674)
T PRK01172 529 GVID--------GDISAAKTAMVLRGWISEASMQK------ITDTYGIAPGDVQARA---SSADWISYSLA-----RLSS 586 (674)
T ss_pred cccc--------chhHHHHHHHHHHHHHcCCCHHH------HHHHhCCChHHHHHHH---HHHHHHHHHHH-----HHHH
Confidence 5421 13578999999999999999853 5567889999999995 44566532100 0111
Q ss_pred HHHHHHHHHH-------HHhccCCCCCCcccCCCCCHHHHHHHhhhccCCCCHHHHHcCCHHHHHHHHhcCCHHHHHHHH
Q psy12216 220 LENVMKLCPM-------IVQGMWDFKNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDML 292 (646)
Q Consensus 220 ~l~~l~L~Qm-------IvQa~W~~~spLlQLPh~~~e~l~~le~~k~~i~tl~~L~~l~~~er~~LL~~ls~~q~~ev~ 292 (646)
. ..|+++|| |+||+|...+||+|||||+...+++| .+.++.|+.+++.++++++..+++ +++.+.+.|.
T Consensus 587 ~-~~~~~~~~l~~~~~rl~~gv~~~~~~L~~ip~~~~~~a~~l--~~~g~~~~~di~~~~~~~~~~i~~-~~~~~~~~i~ 662 (674)
T PRK01172 587 I-YKPEMRRKLEILNIRIKEGIREDLIDLVLIPKVGRVRARRL--YDAGFKTVDDIARSSPERIKKIYG-FSDTLANAIV 662 (674)
T ss_pred H-hhHHHHHHHHHHHHHHHcCCCHHHHhhcCCCCCCHHHHHHH--HHcCCCCHHHHHhCCHHHHHHHhc-cCHHHHHHHH
Confidence 1 12888999 99999999999999999999999999 557899999999999999999874 8999998888
Q ss_pred HHHccC
Q psy12216 293 KVLGNM 298 (646)
Q Consensus 293 ~vl~~~ 298 (646)
..++.+
T Consensus 663 ~~~~~~ 668 (674)
T PRK01172 663 NRAMKI 668 (674)
T ss_pred HHHHHH
Confidence 876653
No 11
>KOG4434|consensus
Probab=99.36 E-value=2.6e-12 Score=133.66 Aligned_cols=75 Identities=41% Similarity=0.663 Sum_probs=71.1
Q ss_pred CCCHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHccCCceeEEeeeeecCCCCCcccCCCCeEEEEEEEEEecCC
Q psy12216 262 IKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMPYVDLHVQPEVIDDEATTEYTAGAIITVTCTLMRKPMS 336 (646)
Q Consensus 262 i~tl~~L~~l~~~er~~LL~~ls~~q~~ev~~vl~~~P~L~I~a~~~V~gEed~~~It~g~ivtL~VkL~R~~~~ 336 (646)
+.++++|+.|.++.|+.||+.|++..+++++.|+..||+|.|+....|.|++|.+.||+|++||+.|+|+|..+.
T Consensus 173 vks~qdla~lk~e~rr~lL~~LsdeeYe~vM~VLg~mP~~~~~ik~~V~dded~n~~TaG~vVTv~Vtl~R~~l~ 247 (520)
T KOG4434|consen 173 VKSCQDLAVLKAETRRSLLRSLSDEEYEDVMVVLGMMPRLQIEIKTVVEDDEDKNELTAGCVVTVKVTLRRSRLI 247 (520)
T ss_pred cccHHHHhhcCHHHHHHHHHhcchHHHHHHHHHHccCcceEEEeeEEEecCCcccceeeeeEEEEEEEEEecccc
Confidence 678999999999999999999999999999999999999999998899999999999999999999999997654
No 12
>PF02889 Sec63: Sec63 Brl domain; InterPro: IPR004179 This domain was named after the yeast Sec63 (or NPL1) (also known as the Brl domain) protein in which it was found. This protein is required for assembly of functional endoplasmic reticulum translocons [, ]. Other yeast proteins containing this domain include pre-mRNA splicing helicase BRR2, HFM1 protein and putative helicases. ; PDB: 3IM2_A 3IM1_A 3HIB_A 2Q0Z_X.
Probab=97.90 E-value=1.2e-05 Score=85.23 Aligned_cols=91 Identities=27% Similarity=0.415 Sum_probs=68.1
Q ss_pred ceecCCCCCcCccceEEEeecccccccHHHHHhcChHHHhhhhccCChHhHHHHHHHhcCCCceEEEEEEEEccCCcccc
Q psy12216 367 GTITPVLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMPYVDLHVQPEVIDDEATTE 446 (646)
Q Consensus 367 ~~~~~qlPh~~ee~~~~i~~~k~~i~~~~~l~~l~~eeRr~lL~~l~~~~~~dv~~v~~~~P~i~l~v~~~v~~~~~~~~ 446 (646)
..++.||||++++....+ .++++.++++|.+++++++..++. .+++++.++++++..||.++|++.+.+.++
T Consensus 147 ~~~L~Qlp~i~~~~~~~l--~~~~i~~l~~l~~~~~~e~~~ll~-~~~~~~~~i~~~~~~~P~~~i~~~~~~~~~----- 218 (314)
T PF02889_consen 147 DSPLLQLPHIGEESLKKL--EKRGIKTLQDLRDLSPEELEELLN-RNPPFGKEILEVASRIPRLEIKASVQVIDE----- 218 (314)
T ss_dssp S-GGGGSTT--HHHHHHH--HHTT--SHHHHHHS-HHHHHHHH--S-HHHHHHHHHHHCCS--EEEEEEETTCCG-----
T ss_pred CChhhcCCCCCHHHHHHH--hccCCCcHHHHhhCCHHHHHHHHh-hhhhhHHHHHHHHHHCCCEEEEEEEecccc-----
Confidence 478999999999998877 346688999999999999998764 566999999999999999999888887765
Q ss_pred ccccccccccccCCCCCcccccCceEEEEEEEEecCCcc
Q psy12216 447 YTAGAIITPEVIDDEATTEYTAGAIITVTCTLMRKPMSV 485 (646)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~i~~g~ivt~~v~l~r~~~~~ 485 (646)
+ ++ ..++|.|+++|.+..+
T Consensus 219 --------------~----~~--~~~~v~v~i~~~~~~~ 237 (314)
T PF02889_consen 219 --------------E----IV--PILTVQVSITRKFSWS 237 (314)
T ss_dssp --------------E----EC--SEEEEEEEEEESSS-S
T ss_pred --------------c----cC--CcEEEEEEEEcccccc
Confidence 1 22 8899999999999753
No 13
>smart00611 SEC63 Domain of unknown function in Sec63p, Brr2p and other proteins.
Probab=97.73 E-value=4.8e-05 Score=80.80 Aligned_cols=89 Identities=24% Similarity=0.357 Sum_probs=74.5
Q ss_pred eecCCCCCcCccceEEEeecccccccHHHHHhcChHHHhhhhccCChHhHHHHHHHhcCCCceEEEEEEEEccCCccccc
Q psy12216 368 TITPVLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMPYVDLHVQPEVIDDEATTEY 447 (646)
Q Consensus 368 ~~~~qlPh~~ee~~~~i~~~k~~i~~~~~l~~l~~eeRr~lL~~l~~~~~~dv~~v~~~~P~i~l~v~~~v~~~~~~~~~ 447 (646)
.++.||||+..+.++.+ .+..+.|+++|..++.+++..++ ++++.+..+|.+++..||.++|.+.+. +.
T Consensus 151 ~~L~Qlp~i~~~~~~~l--~~~~i~s~~~l~~~~~~~~~~ll-~~~~~~~~~i~~~~~~~P~l~v~~~~~--~~------ 219 (312)
T smart00611 151 SPLLQLPHLPEEILKRL--EKKKVLSLEDLLELEDEERGELL-GLLDAEGERVYKVLSRLPKLNIEISLE--PI------ 219 (312)
T ss_pred CccccCCCCCHHHHHHH--HhCCCCCHHHHHhcCHHHHHHHH-cCCHHHHHHHHHHHHhCCcceeEEEEc--CC------
Confidence 56889999999988777 34468899999999999999776 578899999999999999999877654 32
Q ss_pred cccccccccccCCCCCcccccCceEEEEEEEEecCC
Q psy12216 448 TAGAIITPEVIDDEATTEYTAGAIITVTCTLMRKPM 483 (646)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~i~~g~ivt~~v~l~r~~~ 483 (646)
+.++.|..+||+++++|.+.
T Consensus 220 ----------------~~~~~~~~~~i~~~~~~~~~ 239 (312)
T smart00611 220 ----------------TRTVLGVEVTLTVDLTWDDE 239 (312)
T ss_pred ----------------cccccCceEEEEEEEEEccc
Confidence 34668999999999999755
No 14
>KOG0951|consensus
Probab=96.31 E-value=0.0046 Score=74.59 Aligned_cols=215 Identities=19% Similarity=0.097 Sum_probs=133.6
Q ss_pred HHHHHHHhcccccccccCCCCccCCchhhHHHHHHHhCCCCCc---C-----CCCCCCCcchhHHHHHHHHHHhcC-CCC
Q psy12216 102 KRVLMILGASLEFDRRFNSEIIERPSDEIEVPQLIRQIPNLGE---K-----NRERPLYHKYSIKARALIYAHLSN-MQL 172 (646)
Q Consensus 102 ~~lL~iLS~A~EF~~~~~~~i~vR~~E~~eL~~L~~~lp~~~~---k-----~k~~~~~~~~~~Ka~lLLqAhLsR-i~L 172 (646)
+.+.++...+.|.. .+.++..++..+..+...+..... + ........+...|..+++++...| ..+
T Consensus 18 k~~~d~~~~~~e~v-----~v~~~e~dde~~~~l~~~vkse~~ed~~~~~ee~~k~~kq~~~~~k~el~~d~q~t~~~dI 92 (1674)
T KOG0951|consen 18 KKVMDIGIDAAEGV-----EVEVEEIDDESLQDLFDMVKSELDEDDKNVKEEVAKFVKQVPAIIKTELLIDAQKTRESDI 92 (1674)
T ss_pred hhhhhccccccccC-----ccccccCcchhhhHHHHHhhhhhccchhhhhhhhhhhheeccccccchhhhhhhhcchhhh
Confidence 78888999999998 888888877777666554432110 0 000112235567788999999999 556
Q ss_pred ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHHHHHHh---------cc-C-----C-
Q psy12216 173 TSETLEADRMYIVKKCPYLLQEMVTCISQLILLAYAQRVPRLIHIETLENVMKLCPMIVQ---------GM-W-----D- 236 (646)
Q Consensus 173 p~~~L~~D~~~VL~~a~RLl~AmidIa~~~g~la~~~~w~~~p~L~~~l~~l~L~QmIvQ---------a~-W-----~- 236 (646)
..+.|+.+.+.+...++++..+..-++-....++ +.+| +...+..|...+|+.| ++ | .
T Consensus 93 da~~LQR~irk~yela~~~Qe~~~k~~~ilr~~~-~~~~-----lE~~L~~ll~~e~~slV~~l~kNr~~i~~~t~L~~a 166 (1674)
T KOG0951|consen 93 DAPWLQRKIRKVYELASRLQEKERKAAEILRTAS-DDGD-----LEPKLVVLLQFEKISLVEFLRKNRLGIVWCTRLARA 166 (1674)
T ss_pred hHHHHHHHHHHHHhcchhhHHHHHHHHHhHhhcc-Cchh-----hhHHHHHhhhhhhhHHHHHHHhhcchhhHHHHhhhh
Confidence 6778999999888888888877766655443322 4455 7788888888888887 11 1 1
Q ss_pred ----------CCCCcccCCCCCHHHHHHHhhhccCCCCHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHccCCceeEEee
Q psy12216 237 ----------FKNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMPYVDLHVQ 306 (646)
Q Consensus 237 ----------~~spLlQLPh~~~e~l~~le~~k~~i~tl~~L~~l~~~er~~LL~~ls~~q~~ev~~vl~~~P~L~I~a~ 306 (646)
...+.+| |||++-+.+.+.. ....+.+++..+....+..++....+-...++..+....|.|+++..
T Consensus 167 aresE~~siEe~m~~lg-p~l~d~V~~~~a~--~~~~~~qeek~~~l~~~e~~~~~~~~ls~td~~~v~~~~~~iDLekt 243 (1674)
T KOG0951|consen 167 ARESERLSIEEIMRFLG-PELNDIVAKYIAT--RQTKSEQEEKEKKLEKREELLVSVIALSKTDVLGVLEMRPVIDLEKT 243 (1674)
T ss_pred hccchhccHHHHHhhcC-hhhHHHHHHHHhh--hcccccchhhhhhhhccchhhhhhhhhcccccccccccCcccchhhh
Confidence 1257778 9998877766632 33455556555544333333221112222344457788899998755
Q ss_pred eeecCCCCCcccCCCCeEEEEEEEEEe
Q psy12216 307 PEVIDDEATTEYTAGAIITVTCTLMRK 333 (646)
Q Consensus 307 ~~V~gEed~~~It~g~ivtL~VkL~R~ 333 (646)
++-.|+ ..+..|+.....=.++|.
T Consensus 244 ~ftEGe---~lm~e~~c~lP~GS~rl~ 267 (1674)
T KOG0951|consen 244 CFTEGE---ELMQEGKCKLPQGSFRLK 267 (1674)
T ss_pred hhhhhh---hhhccCceecCCccEEEe
Confidence 445554 456666554444344443
No 15
>COG1204 Superfamily II helicase [General function prediction only]
Probab=94.27 E-value=0.064 Score=64.04 Aligned_cols=172 Identities=12% Similarity=0.027 Sum_probs=127.0
Q ss_pred eehhhcccccchhhhhhhcccccccCcchHHHHHHHHHhh-ccCCCCCHHHHHHHHhcccccccccCCCCccCCchhhHH
Q psy12216 54 YALVFMVALPTAVGMWWYKSIRYTGDKVLLETINFYYAFF-QITPHMALKRVLMILGASLEFDRRFNSEIIERPSDEIEV 132 (646)
Q Consensus 54 Y~llfgvvLP~~Vg~ww~~s~kyt~~gV~~eT~~~F~~~~-~l~~~~s~~~lL~iLS~A~EF~~~~~~~i~vR~~E~~eL 132 (646)
+......+-|+.+|.-- ++.+|..+|+..|..+. .+....+..+++..+|.+.+|. .+..|..+..++
T Consensus 492 ~~~~~~~~~ate~g~~~------s~~yi~~~sa~~~~~~l~~~~~~~~~~~~l~~is~~pd~~-----~~~~~~~~~~~~ 560 (766)
T COG1204 492 LDADWEALHATELGKLV------SRLYIDPESAKIFRDLLAELALEPTEIGLLYLISLTPDLM-----PIKLRERESSEL 560 (766)
T ss_pred eeccccccchhHHHHHh------hhccCCHHHHHHHHHHHHHhccccchHHHhhhhhcCccch-----hhhhhhhhhhhh
Confidence 33444455566666543 46689999999998432 2333358999999999999999 778887777664
Q ss_pred --HHHHHhCCCCCcCCCCCCCCcchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcc
Q psy12216 133 --PQLIRQIPNLGEKNRERPLYHKYSIKARALIYAHLSNMQLTSETLEADRMYIVKKCPYLLQEMVTCISQLILLAYAQR 210 (646)
Q Consensus 133 --~~L~~~lp~~~~k~k~~~~~~~~~~Ka~lLLqAhLsRi~Lp~~~L~~D~~~VL~~a~RLl~AmidIa~~~g~la~~~~ 210 (646)
..+....+... ......+..|.+.+++++.....+...-...|..+|+++..+...++..++....|
T Consensus 561 ~~~~~~~~~~~~~-----~~~~~~~~~e~~~~l~~~~~~~~l~~wi~~~~~~~i~~~~~~~~~dl~~~~~~a~w------ 629 (766)
T COG1204 561 VLDELEEQSDYLL-----GERLDELAVEYNLLLQALKTAARLLDWINEADEDEILNAYGVAPGDLLRIAETAEW------ 629 (766)
T ss_pred hHHHHHhcchHHh-----hccccccchhhHHHHHHHHHHHHHHHHHHhCcHHHHHHHhCcchhhHHhhcchhhh------
Confidence 44455554432 11223455677889999999988877788899999999999999999999987766
Q ss_pred CcccchHHHHHHHHHHHHHHHhccCCCCCCcccCCCCCHHHHHHHh
Q psy12216 211 VPRLIHIETLENVMKLCPMIVQGMWDFKNPLLQLPYVTDDHLKHFI 256 (646)
Q Consensus 211 w~~~p~L~~~l~~l~L~QmIvQa~W~~~spLlQLPh~~~e~l~~le 256 (646)
+ ++. +..|+.++.+..|....++.|+ ......-.+++
T Consensus 630 ------~-~~~-~~~l~~~~~r~~~~~~~~~~~~-~~~~~~~~rie 666 (766)
T COG1204 630 ------L-SAD-LLALGKAAERLAKILGLGLHVL-RKLEILSLRIE 666 (766)
T ss_pred ------h-hhh-hhhhhhhhhhhHhhhCCCcccc-ccchhhhhhhh
Confidence 4 333 8899999999999998988888 66666555564
No 16
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=91.06 E-value=0.12 Score=56.26 Aligned_cols=27 Identities=26% Similarity=0.639 Sum_probs=25.5
Q ss_pred hhhhHhhhccCHHHHHhHHHhCCCCCC
Q psy12216 2 KLTKAYQALTDEESRRNFEKYGNPDGP 28 (646)
Q Consensus 2 ~ItKAYkaLTDe~~R~N~ekYGnPDGp 28 (646)
+|+.||+.|+|++.|..|.+|||+.-.
T Consensus 49 EI~eAYEVLsD~eKRa~YD~fG~~~~~ 75 (371)
T COG0484 49 EINEAYEVLSDPEKRAAYDQFGHAGFK 75 (371)
T ss_pred HHHHHHHHhCCHHHHHHhhccCccccc
Confidence 799999999999999999999999865
No 17
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=90.29 E-value=0.3 Score=53.87 Aligned_cols=84 Identities=15% Similarity=0.108 Sum_probs=67.6
Q ss_pred eecCCCCCcCccceEEEeecccccccHHHHHhcChHHHhhhhccCChHhHHHHHHHhcCCCceEE-EEEEEEccCCcccc
Q psy12216 368 TITPVLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMPYVDL-HVQPEVIDDEATTE 446 (646)
Q Consensus 368 ~~~~qlPh~~ee~~~~i~~~k~~i~~~~~l~~l~~eeRr~lL~~l~~~~~~dv~~v~~~~P~i~l-~v~~~v~~~~~~~~ 446 (646)
-..+|+||..-|....+. -+-|-++.+|..|.+++-...|.+++..|..++..|...+|++.+ .+.|-|.||
T Consensus 335 f~ilQlp~~d~E~~~~~s--~r~I~~~~~~~sL~~~~~g~vl~n~~~~~l~e~~~va~gIPr~~~~~a~flv~~d----- 407 (610)
T COG5407 335 FRILQLPRSDVEYAQRVS--LRLIEGMKAIGSLIAKRYGNVLKNLVVLELMEIQAVADGIPRYFLLQAPFLVFED----- 407 (610)
T ss_pred chhhcccchhHHHHHHhh--hhhhhhhhhHhhHHHHHHhhhhhhHHHHHHHHHHHHhcCCCceEEEecceeeccc-----
Confidence 457899999888765552 234667778888877777778889999999999999999999998 689988876
Q ss_pred ccccccccccccCCCCCcccccCceEEEE
Q psy12216 447 YTAGAIITPEVIDDEATTEYTAGAIITVT 475 (646)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~i~~g~ivt~~ 475 (646)
+.||+|++--|.
T Consensus 408 -----------------~~it~~s~~~vs 419 (610)
T COG5407 408 -----------------LFITEKSKERVS 419 (610)
T ss_pred -----------------ceecccceeeEE
Confidence 689999876444
No 18
>PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A ....
Probab=84.87 E-value=1.4 Score=35.36 Aligned_cols=53 Identities=17% Similarity=0.267 Sum_probs=43.7
Q ss_pred cccCCCCCHHHHHHHhhhccCCCCHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHc
Q psy12216 241 LLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLG 296 (646)
Q Consensus 241 LlQLPh~~~e~l~~le~~k~~i~tl~~L~~l~~~er~~LL~~ls~~q~~ev~~vl~ 296 (646)
|+++|++++..+++|.. .++.|+.+|...+.++... +.++++...+.+...++
T Consensus 7 L~~I~Gig~~~a~~L~~--~G~~t~~~l~~a~~~~L~~-i~Gig~~~a~~i~~~~~ 59 (60)
T PF14520_consen 7 LLSIPGIGPKRAEKLYE--AGIKTLEDLANADPEELAE-IPGIGEKTAEKIIEAAR 59 (60)
T ss_dssp HHTSTTCHHHHHHHHHH--TTCSSHHHHHTSHHHHHHT-STTSSHHHHHHHHHHHH
T ss_pred hccCCCCCHHHHHHHHh--cCCCcHHHHHcCCHHHHhc-CCCCCHHHHHHHHHHHh
Confidence 67899999999999943 4789999999998877765 34689999988887764
No 19
>PRK14288 chaperone protein DnaJ; Provisional
Probab=84.63 E-value=0.56 Score=51.49 Aligned_cols=24 Identities=33% Similarity=0.736 Sum_probs=22.4
Q ss_pred hhhhHhhhccCHHHHHhHHHhCCC
Q psy12216 2 KLTKAYQALTDEESRRNFEKYGNP 25 (646)
Q Consensus 2 ~ItKAYkaLTDe~~R~N~ekYGnP 25 (646)
+|+.||+.|+|+..|..|.+||+-
T Consensus 48 ~i~~AYevLsd~~kR~~YD~~G~~ 71 (369)
T PRK14288 48 LINEAYGVLSDEKKRALYDRYGKK 71 (369)
T ss_pred HHHHHHHHhccHHHHHHHHHhccc
Confidence 599999999999999999999973
No 20
>PRK14296 chaperone protein DnaJ; Provisional
Probab=82.73 E-value=0.7 Score=50.82 Aligned_cols=24 Identities=21% Similarity=0.679 Sum_probs=22.5
Q ss_pred hhhhHhhhccCHHHHHhHHHhCCC
Q psy12216 2 KLTKAYQALTDEESRRNFEKYGNP 25 (646)
Q Consensus 2 ~ItKAYkaLTDe~~R~N~ekYGnP 25 (646)
+|+.||+.|.|+..|+.|.+||+.
T Consensus 48 ~i~~AyevLsD~~KR~~YD~~G~~ 71 (372)
T PRK14296 48 EINEAADVLLDKDKRKQYDQFGHA 71 (372)
T ss_pred HHHHHHHHhcCHHHhhhhhhccch
Confidence 599999999999999999999973
No 21
>PRK14286 chaperone protein DnaJ; Provisional
Probab=82.42 E-value=0.79 Score=50.41 Aligned_cols=23 Identities=30% Similarity=0.751 Sum_probs=21.9
Q ss_pred hhhhHhhhccCHHHHHhHHHhCC
Q psy12216 2 KLTKAYQALTDEESRRNFEKYGN 24 (646)
Q Consensus 2 ~ItKAYkaLTDe~~R~N~ekYGn 24 (646)
+|+.||+.|+|+..|+.|.+||+
T Consensus 49 ~i~~Ay~vL~d~~kR~~YD~~G~ 71 (372)
T PRK14286 49 EATEAYEILRDPKKRQAYDQFGK 71 (372)
T ss_pred HHHHHHHHhccHHHHHHHHHhCc
Confidence 68999999999999999999996
No 22
>PRK14287 chaperone protein DnaJ; Provisional
Probab=81.83 E-value=0.84 Score=50.17 Aligned_cols=23 Identities=22% Similarity=0.768 Sum_probs=22.0
Q ss_pred hhhhHhhhccCHHHHHhHHHhCC
Q psy12216 2 KLTKAYQALTDEESRRNFEKYGN 24 (646)
Q Consensus 2 ~ItKAYkaLTDe~~R~N~ekYGn 24 (646)
+|+.||+.|+|+..|..|.+||+
T Consensus 48 ~i~~Ay~~L~d~~kR~~YD~~G~ 70 (371)
T PRK14287 48 EVKEAYDTLSDPQKKAHYDQFGH 70 (371)
T ss_pred HHHHHHHHhCcHhHHHHHHhhCC
Confidence 68999999999999999999996
No 23
>PRK14298 chaperone protein DnaJ; Provisional
Probab=79.81 E-value=0.97 Score=49.84 Aligned_cols=23 Identities=30% Similarity=0.853 Sum_probs=22.0
Q ss_pred hhhhHhhhccCHHHHHhHHHhCC
Q psy12216 2 KLTKAYQALTDEESRRNFEKYGN 24 (646)
Q Consensus 2 ~ItKAYkaLTDe~~R~N~ekYGn 24 (646)
+|+.||+.|+|+..|..|.+||+
T Consensus 49 ~i~~Ay~vL~d~~kR~~YD~~G~ 71 (377)
T PRK14298 49 EISEAYAVLSDAEKRAQYDRFGH 71 (377)
T ss_pred HHHHHHHHhcchHhhhhhhhcCc
Confidence 58999999999999999999996
No 24
>PRK14279 chaperone protein DnaJ; Provisional
Probab=79.29 E-value=0.96 Score=50.10 Aligned_cols=23 Identities=17% Similarity=0.433 Sum_probs=21.9
Q ss_pred hhhhHhhhccCHHHHHhHHHhCC
Q psy12216 2 KLTKAYQALTDEESRRNFEKYGN 24 (646)
Q Consensus 2 ~ItKAYkaLTDe~~R~N~ekYGn 24 (646)
+|+.||+.|+|++.|+.|.+||+
T Consensus 54 ~i~~Ay~vLsD~~KR~~YD~~G~ 76 (392)
T PRK14279 54 AVSEAHDVLSDPAKRKEYDETRR 76 (392)
T ss_pred HHHHHHHHhcchhhhhHHHHhhh
Confidence 58999999999999999999986
No 25
>PF13543 KSR1-SAM: SAM like domain present in kinase suppressor RAS 1
Probab=78.42 E-value=25 Score=32.97 Aligned_cols=57 Identities=16% Similarity=0.345 Sum_probs=40.3
Q ss_pred CCCcccCCC---------CCHHHHHHHhhhccCCCCHHHHHcCCHHHHHHHHh--cCCHHHHHHHHHHHcc
Q psy12216 238 KNPLLQLPY---------VTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVK--FMNDEQYSDMLKVLGN 297 (646)
Q Consensus 238 ~spLlQLPh---------~~~e~l~~le~~k~~i~tl~~L~~l~~~er~~LL~--~ls~~q~~ev~~vl~~ 297 (646)
..-|.++|. +.++.+..+.. ...|+++|++|++.+.+.+|. +.++++...+.+.++.
T Consensus 60 ~~~l~~yP~l~~WL~vVgl~~~~i~~i~~---~~~tLe~Llemsd~el~~~l~~~g~~~EE~rRL~~Al~~ 127 (129)
T PF13543_consen 60 AAELNSYPSLRQWLRVVGLRPESIQAILS---KVLTLEALLEMSDEELKEILNRCGAREEECRRLCRALSN 127 (129)
T ss_pred chhcccCCcHHHHhhhcCCCHHHHHHHHH---hhcCHHHHHhCCHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 345667775 45777777633 468999999999999999997 3456666666655543
No 26
>PRK14291 chaperone protein DnaJ; Provisional
Probab=78.08 E-value=1.3 Score=48.95 Aligned_cols=24 Identities=33% Similarity=0.819 Sum_probs=22.5
Q ss_pred hhhhHhhhccCHHHHHhHHHhCCC
Q psy12216 2 KLTKAYQALTDEESRRNFEKYGNP 25 (646)
Q Consensus 2 ~ItKAYkaLTDe~~R~N~ekYGnP 25 (646)
+|+.||+.|+|+..|..|..||+.
T Consensus 47 ~i~~Ay~vLsd~~kR~~YD~~g~~ 70 (382)
T PRK14291 47 EINEAYQVLSDPEKRKLYDQFGHA 70 (382)
T ss_pred HHHHHHHHhcCHHHHHHHhhhccc
Confidence 589999999999999999999974
No 27
>PRK14285 chaperone protein DnaJ; Provisional
Probab=77.92 E-value=1.1 Score=49.16 Aligned_cols=24 Identities=29% Similarity=0.775 Sum_probs=22.4
Q ss_pred hhhhHhhhccCHHHHHhHHHhCCC
Q psy12216 2 KLTKAYQALTDEESRRNFEKYGNP 25 (646)
Q Consensus 2 ~ItKAYkaLTDe~~R~N~ekYGnP 25 (646)
+|+.||+.|+|+..|..|..||+-
T Consensus 48 ~i~~Ay~vL~d~~kr~~yd~~g~~ 71 (365)
T PRK14285 48 EATEAYEVLIDDNKRAQYDRFGHT 71 (365)
T ss_pred HHHHHHHHHcCcchhHHHHhcCcc
Confidence 689999999999999999999973
No 28
>PRK14276 chaperone protein DnaJ; Provisional
Probab=77.88 E-value=1.3 Score=48.92 Aligned_cols=23 Identities=30% Similarity=0.803 Sum_probs=22.0
Q ss_pred hhhhHhhhccCHHHHHhHHHhCC
Q psy12216 2 KLTKAYQALTDEESRRNFEKYGN 24 (646)
Q Consensus 2 ~ItKAYkaLTDe~~R~N~ekYGn 24 (646)
+|+.||+.|+|+..|..|.+||+
T Consensus 48 ~i~~Ay~vL~d~~kR~~YD~~G~ 70 (380)
T PRK14276 48 EVQEAYETLSDPQKRAAYDQYGA 70 (380)
T ss_pred HHHHHHHHhcCHhhhhhHhhcCC
Confidence 68999999999999999999996
No 29
>KOG0713|consensus
Probab=77.85 E-value=1.3 Score=47.45 Aligned_cols=22 Identities=36% Similarity=0.915 Sum_probs=21.4
Q ss_pred hhhhHhhhccCHHHHHhHHHhC
Q psy12216 2 KLTKAYQALTDEESRRNFEKYG 23 (646)
Q Consensus 2 ~ItKAYkaLTDe~~R~N~ekYG 23 (646)
+|+.||+-|.||+.|+-|.+||
T Consensus 61 ~in~AYEVLsDpekRk~YD~~G 82 (336)
T KOG0713|consen 61 EINAAYEVLSDPEKRKHYDTYG 82 (336)
T ss_pred HHHHHHHHhcCHHHHHHHHhhh
Confidence 6999999999999999999999
No 30
>PRK14284 chaperone protein DnaJ; Provisional
Probab=76.81 E-value=1.5 Score=48.58 Aligned_cols=23 Identities=30% Similarity=0.889 Sum_probs=22.0
Q ss_pred hhhhHhhhccCHHHHHhHHHhCC
Q psy12216 2 KLTKAYQALTDEESRRNFEKYGN 24 (646)
Q Consensus 2 ~ItKAYkaLTDe~~R~N~ekYGn 24 (646)
+|+.||+.|+|+..|+.|.+||+
T Consensus 46 ~i~~Ay~vL~d~~kR~~YD~~G~ 68 (391)
T PRK14284 46 EVSEAYEVLSDAQKRESYDRYGK 68 (391)
T ss_pred HHHHHHHHhcCHHHHHHHHhccc
Confidence 58999999999999999999997
No 31
>PRK14280 chaperone protein DnaJ; Provisional
Probab=76.52 E-value=1.5 Score=48.26 Aligned_cols=24 Identities=25% Similarity=0.843 Sum_probs=22.3
Q ss_pred hhhhHhhhccCHHHHHhHHHhCCC
Q psy12216 2 KLTKAYQALTDEESRRNFEKYGNP 25 (646)
Q Consensus 2 ~ItKAYkaLTDe~~R~N~ekYGnP 25 (646)
+|+.||+.|+|+..|..|..||+-
T Consensus 48 ~i~~Ay~vL~d~~kr~~yD~~G~~ 71 (376)
T PRK14280 48 EISEAYEVLSDDQKRAQYDQFGHA 71 (376)
T ss_pred HHHHHHHHhccHhHHHHHHhcCcc
Confidence 589999999999999999999963
No 32
>PRK14300 chaperone protein DnaJ; Provisional
Probab=76.44 E-value=1.4 Score=48.48 Aligned_cols=23 Identities=30% Similarity=0.822 Sum_probs=22.0
Q ss_pred hhhhHhhhccCHHHHHhHHHhCC
Q psy12216 2 KLTKAYQALTDEESRRNFEKYGN 24 (646)
Q Consensus 2 ~ItKAYkaLTDe~~R~N~ekYGn 24 (646)
+|+.||+.|.|+..|..|..||+
T Consensus 47 ~i~~Ay~~L~d~~~r~~yD~~G~ 69 (372)
T PRK14300 47 EINAAYDVLKDEQKRAAYDRFGH 69 (372)
T ss_pred HHHHHHHHhhhHhHhhHHHhccc
Confidence 69999999999999999999996
No 33
>PRK14277 chaperone protein DnaJ; Provisional
Probab=74.76 E-value=1.8 Score=47.82 Aligned_cols=23 Identities=26% Similarity=0.801 Sum_probs=22.0
Q ss_pred hhhhHhhhccCHHHHHhHHHhCC
Q psy12216 2 KLTKAYQALTDEESRRNFEKYGN 24 (646)
Q Consensus 2 ~ItKAYkaLTDe~~R~N~ekYGn 24 (646)
+|+.||+.|+|+..|.-|.+||+
T Consensus 50 ~i~~Ay~vL~d~~kr~~yD~~G~ 72 (386)
T PRK14277 50 EINEAYEILSDPQKRAQYDQFGH 72 (386)
T ss_pred HHHHHHHHhCCHHHHHHHHhhcc
Confidence 68999999999999999999996
No 34
>PRK14283 chaperone protein DnaJ; Provisional
Probab=74.62 E-value=1.7 Score=47.90 Aligned_cols=23 Identities=30% Similarity=0.900 Sum_probs=21.9
Q ss_pred hhhhHhhhccCHHHHHhHHHhCC
Q psy12216 2 KLTKAYQALTDEESRRNFEKYGN 24 (646)
Q Consensus 2 ~ItKAYkaLTDe~~R~N~ekYGn 24 (646)
+|++||+.|+|+..|.-|.+||+
T Consensus 49 ~i~~Ay~~Lsd~~kR~~YD~~G~ 71 (378)
T PRK14283 49 EISEAYAVLSDDEKRQRYDQFGH 71 (378)
T ss_pred HHHHHHHHhchhHHHHHHhhhcc
Confidence 58999999999999999999996
No 35
>PRK14294 chaperone protein DnaJ; Provisional
Probab=74.40 E-value=1.9 Score=47.31 Aligned_cols=24 Identities=29% Similarity=0.696 Sum_probs=22.3
Q ss_pred hhhhHhhhccCHHHHHhHHHhCCC
Q psy12216 2 KLTKAYQALTDEESRRNFEKYGNP 25 (646)
Q Consensus 2 ~ItKAYkaLTDe~~R~N~ekYGnP 25 (646)
+|+.||+.|.|+..|..|.+||+.
T Consensus 49 ~~~~Ay~vL~d~~~r~~yD~~G~~ 72 (366)
T PRK14294 49 EAAEAYEVLSDPKKRGIYDQYGHE 72 (366)
T ss_pred HHHHHHHHhccHHHHHHHHhhccc
Confidence 589999999999999999999973
No 36
>PRK14299 chaperone protein DnaJ; Provisional
Probab=74.33 E-value=2 Score=45.61 Aligned_cols=24 Identities=38% Similarity=0.818 Sum_probs=22.6
Q ss_pred hhhhHhhhccCHHHHHhHHHhCCC
Q psy12216 2 KLTKAYQALTDEESRRNFEKYGNP 25 (646)
Q Consensus 2 ~ItKAYkaLTDe~~R~N~ekYGnP 25 (646)
+|+.||+.|+|+..|..|..||+.
T Consensus 48 ~i~~Ay~~L~d~~kr~~yD~~g~~ 71 (291)
T PRK14299 48 EINEAYTVLSDPEKRRIYDTYGTT 71 (291)
T ss_pred HHHHHHHHhcCHHHHHHHHhcCCc
Confidence 589999999999999999999975
No 37
>KOG0712|consensus
Probab=73.65 E-value=1.8 Score=46.72 Aligned_cols=23 Identities=35% Similarity=0.826 Sum_probs=21.8
Q ss_pred ChhhhHhhhccCHHHHHhHHHhC
Q psy12216 1 MKLTKAYQALTDEESRRNFEKYG 23 (646)
Q Consensus 1 i~ItKAYkaLTDe~~R~N~ekYG 23 (646)
++|+.||+.|.|++.|+-|.+||
T Consensus 45 kei~~AyevLsd~ekr~~yD~~g 67 (337)
T KOG0712|consen 45 KEISQAYEVLSDPEKREIYDQYG 67 (337)
T ss_pred HHHHHHHHHhcCHHHHHHHHhhh
Confidence 37999999999999999999999
No 38
>KOG0716|consensus
Probab=73.06 E-value=1.7 Score=45.37 Aligned_cols=23 Identities=30% Similarity=0.700 Sum_probs=21.8
Q ss_pred ChhhhHhhhccCHHHHHhHHHhC
Q psy12216 1 MKLTKAYQALTDEESRRNFEKYG 23 (646)
Q Consensus 1 i~ItKAYkaLTDe~~R~N~ekYG 23 (646)
++|++||..|||+..|.-|.+||
T Consensus 75 ~eIN~Ay~ILsD~~kR~~YD~~g 97 (279)
T KOG0716|consen 75 KEINTAYAILSDPTKRNVYDEYG 97 (279)
T ss_pred HHHHHHHHHhcChhhhhhHHHhh
Confidence 47999999999999999999998
No 39
>PRK14282 chaperone protein DnaJ; Provisional
Probab=72.39 E-value=2.1 Score=47.04 Aligned_cols=24 Identities=25% Similarity=0.689 Sum_probs=22.2
Q ss_pred hhhhHhhhccCHHHHHhHHHhCCC
Q psy12216 2 KLTKAYQALTDEESRRNFEKYGNP 25 (646)
Q Consensus 2 ~ItKAYkaLTDe~~R~N~ekYGnP 25 (646)
+|+.||+.|+|+..|..|..||.-
T Consensus 50 ~i~~Ay~vL~d~~kR~~YD~~g~~ 73 (369)
T PRK14282 50 EIQEAYEVLSDPQKRAMYDRFGYV 73 (369)
T ss_pred HHHHHHHHhcChhhHHHHhhcCcc
Confidence 589999999999999999999963
No 40
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=72.35 E-value=2.1 Score=47.85 Aligned_cols=24 Identities=33% Similarity=0.861 Sum_probs=22.3
Q ss_pred hhhhHhhhccCHHHHHhHHHhCCC
Q psy12216 2 KLTKAYQALTDEESRRNFEKYGNP 25 (646)
Q Consensus 2 ~ItKAYkaLTDe~~R~N~ekYGnP 25 (646)
+|+.||+.|+|+..|..|..||..
T Consensus 69 ~i~~AYevLsD~~kR~~YD~~G~~ 92 (421)
T PTZ00037 69 EISRAYEVLSDPEKRKIYDEYGEE 92 (421)
T ss_pred HHHHHHHHhccHHHHHHHhhhcch
Confidence 589999999999999999999963
No 41
>PRK14278 chaperone protein DnaJ; Provisional
Probab=72.09 E-value=2 Score=47.39 Aligned_cols=24 Identities=38% Similarity=0.679 Sum_probs=22.6
Q ss_pred hhhhHhhhccCHHHHHhHHHhCCC
Q psy12216 2 KLTKAYQALTDEESRRNFEKYGNP 25 (646)
Q Consensus 2 ~ItKAYkaLTDe~~R~N~ekYGnP 25 (646)
+|+.||+.|+|+..|..|..||++
T Consensus 47 ~i~~Ay~vL~d~~~r~~YD~~G~~ 70 (378)
T PRK14278 47 EISVAYEVLSDPEKRRIVDLGGDP 70 (378)
T ss_pred HHHHHHHHhchhhhhhhhhccCCc
Confidence 589999999999999999999975
No 42
>PRK14289 chaperone protein DnaJ; Provisional
Probab=71.20 E-value=2.5 Score=46.76 Aligned_cols=24 Identities=25% Similarity=0.733 Sum_probs=22.2
Q ss_pred hhhhHhhhccCHHHHHhHHHhCCC
Q psy12216 2 KLTKAYQALTDEESRRNFEKYGNP 25 (646)
Q Consensus 2 ~ItKAYkaLTDe~~R~N~ekYGnP 25 (646)
+|+.||++|+|+..|..|.+||..
T Consensus 50 ~i~~Ay~~L~d~~~R~~yD~~G~~ 73 (386)
T PRK14289 50 EAAEAYDVLSDPDKRSRYDQFGHA 73 (386)
T ss_pred HHHHHHHHhcCHHHHHHHHHhccc
Confidence 589999999999999999999963
No 43
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=69.16 E-value=3.2 Score=50.43 Aligned_cols=27 Identities=33% Similarity=0.647 Sum_probs=23.8
Q ss_pred hhhhHhhhccCHHHHHhHHHhCCCCCCC
Q psy12216 2 KLTKAYQALTDEESRRNFEKYGNPDGPG 29 (646)
Q Consensus 2 ~ItKAYkaLTDe~~R~N~ekYGnPDGpq 29 (646)
.|+.||+.|+|+..|+.|.+||.. |-.
T Consensus 617 ~I~EAYeVLSDp~kRk~YD~~G~~-Gl~ 643 (1136)
T PTZ00341 617 KINEAYQILGDIDKKKMYNKFGYD-GIK 643 (1136)
T ss_pred HHHHHHHHhCCHHHHHHHhhcccc-ccC
Confidence 589999999999999999999975 533
No 44
>PRK10767 chaperone protein DnaJ; Provisional
Probab=69.11 E-value=2.7 Score=46.21 Aligned_cols=24 Identities=29% Similarity=0.803 Sum_probs=22.5
Q ss_pred hhhhHhhhccCHHHHHhHHHhCCC
Q psy12216 2 KLTKAYQALTDEESRRNFEKYGNP 25 (646)
Q Consensus 2 ~ItKAYkaLTDe~~R~N~ekYGnP 25 (646)
+|+.||+.|+|+..|..|..||+.
T Consensus 49 ~i~~Ay~~L~d~~~r~~yd~~g~~ 72 (371)
T PRK10767 49 EIKEAYEVLSDPQKRAAYDQYGHA 72 (371)
T ss_pred HHHHHHHHhcchhhhhHhhhcccc
Confidence 589999999999999999999974
No 45
>PRK14290 chaperone protein DnaJ; Provisional
Probab=68.18 E-value=2.7 Score=46.17 Aligned_cols=24 Identities=29% Similarity=0.736 Sum_probs=22.3
Q ss_pred hhhhHhhhccCHHHHHhHHHhCCC
Q psy12216 2 KLTKAYQALTDEESRRNFEKYGNP 25 (646)
Q Consensus 2 ~ItKAYkaLTDe~~R~N~ekYGnP 25 (646)
+|+.||+.|+|+..|..|..||+-
T Consensus 49 ~i~~Ay~~L~d~~~r~~yd~~G~~ 72 (365)
T PRK14290 49 EISEAYEVLSDPQKRRQYDQTGTV 72 (365)
T ss_pred HHHHHHHHhcChhhhhhhcccCCc
Confidence 589999999999999999999973
No 46
>PRK14281 chaperone protein DnaJ; Provisional
Probab=67.97 E-value=2.7 Score=46.61 Aligned_cols=24 Identities=25% Similarity=0.862 Sum_probs=22.6
Q ss_pred hhhhHhhhccCHHHHHhHHHhCCC
Q psy12216 2 KLTKAYQALTDEESRRNFEKYGNP 25 (646)
Q Consensus 2 ~ItKAYkaLTDe~~R~N~ekYGnP 25 (646)
+|+.||+.|+|+..|..|..||+.
T Consensus 48 ~i~~Ay~vL~d~~~r~~yD~~g~~ 71 (397)
T PRK14281 48 EVNEAYEVLSNDDKRRRYDQFGHA 71 (397)
T ss_pred HHHHHHHHhhhhhhhhhhhhccch
Confidence 689999999999999999999974
No 47
>PRK14292 chaperone protein DnaJ; Provisional
Probab=67.28 E-value=2.9 Score=45.96 Aligned_cols=24 Identities=29% Similarity=0.810 Sum_probs=22.5
Q ss_pred hhhhHhhhccCHHHHHhHHHhCCC
Q psy12216 2 KLTKAYQALTDEESRRNFEKYGNP 25 (646)
Q Consensus 2 ~ItKAYkaLTDe~~R~N~ekYGnP 25 (646)
+|+.||+.|+|+..|.-|..||+.
T Consensus 46 ~i~~Ay~vL~d~~~r~~yd~~G~~ 69 (371)
T PRK14292 46 QINEAYAVLSDAEKRAHYDRFGTA 69 (371)
T ss_pred HHHHHHHHhcchhhhhhHhhcCCc
Confidence 589999999999999999999975
No 48
>KOG2422|consensus
Probab=66.94 E-value=3.5 Score=47.17 Aligned_cols=7 Identities=0% Similarity=-0.249 Sum_probs=3.5
Q ss_pred cccccCc
Q psy12216 464 TEYTAGA 470 (646)
Q Consensus 464 ~~i~~g~ 470 (646)
-.++-|.
T Consensus 35 ~s~~k~e 41 (665)
T KOG2422|consen 35 ESGQKRE 41 (665)
T ss_pred hcccccc
Confidence 4455554
No 49
>PRK14297 chaperone protein DnaJ; Provisional
Probab=66.53 E-value=2.8 Score=46.30 Aligned_cols=24 Identities=25% Similarity=0.761 Sum_probs=22.3
Q ss_pred hhhhHhhhccCHHHHHhHHHhCCC
Q psy12216 2 KLTKAYQALTDEESRRNFEKYGNP 25 (646)
Q Consensus 2 ~ItKAYkaLTDe~~R~N~ekYGnP 25 (646)
+|+.||+.|.|+..|.-|.+||+-
T Consensus 49 ~i~~Ay~vL~d~~~r~~yD~~G~~ 72 (380)
T PRK14297 49 EINEAYQVLSDPQKKAQYDQFGTA 72 (380)
T ss_pred HHHHHHHHhcCHhhhCchhhcCcc
Confidence 589999999999999999999963
No 50
>PRK14293 chaperone protein DnaJ; Provisional
Probab=66.41 E-value=3.3 Score=45.59 Aligned_cols=24 Identities=29% Similarity=0.841 Sum_probs=22.6
Q ss_pred hhhhHhhhccCHHHHHhHHHhCCC
Q psy12216 2 KLTKAYQALTDEESRRNFEKYGNP 25 (646)
Q Consensus 2 ~ItKAYkaLTDe~~R~N~ekYGnP 25 (646)
+|++||+.|+|+..|.-|..||+.
T Consensus 47 ~i~~Ay~vL~~~~~R~~yd~~g~~ 70 (374)
T PRK14293 47 EINRAYEVLSDPETRARYDQFGEA 70 (374)
T ss_pred HHHHHHHHHhchHHHHHHhhcccc
Confidence 589999999999999999999975
No 51
>PRK14301 chaperone protein DnaJ; Provisional
Probab=64.48 E-value=3.4 Score=45.51 Aligned_cols=23 Identities=30% Similarity=0.780 Sum_probs=21.9
Q ss_pred hhhhHhhhccCHHHHHhHHHhCC
Q psy12216 2 KLTKAYQALTDEESRRNFEKYGN 24 (646)
Q Consensus 2 ~ItKAYkaLTDe~~R~N~ekYGn 24 (646)
+|+.||+.|+|+..|.-|..||+
T Consensus 49 ~i~~Ay~vL~d~~kr~~yD~~g~ 71 (373)
T PRK14301 49 EAAEAYEVLRDAEKRARYDRFGH 71 (373)
T ss_pred HHHHHHHHhcchhhhhhhhhccc
Confidence 58999999999999999999996
No 52
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=61.84 E-value=6.3 Score=30.00 Aligned_cols=22 Identities=41% Similarity=0.804 Sum_probs=20.6
Q ss_pred hhhccCHHHHHhHHHhCCCCCC
Q psy12216 7 YQALTDEESRRNFEKYGNPDGP 28 (646)
Q Consensus 7 YkaLTDe~~R~N~ekYGnPDGp 28 (646)
+..|+|++.|+...+||-|-||
T Consensus 3 ~~~LSd~eL~~~L~~~G~~~gP 24 (44)
T smart00540 3 VDRLSDAELRAELKQYGLPPGP 24 (44)
T ss_pred hhHcCHHHHHHHHHHcCCCCCC
Confidence 5689999999999999999999
No 53
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=61.80 E-value=4.5 Score=44.14 Aligned_cols=24 Identities=29% Similarity=0.811 Sum_probs=22.3
Q ss_pred hhhhHhhhccCHHHHHhHHHhCCC
Q psy12216 2 KLTKAYQALTDEESRRNFEKYGNP 25 (646)
Q Consensus 2 ~ItKAYkaLTDe~~R~N~ekYGnP 25 (646)
+|+.||+.|.|+..|.-|..||+-
T Consensus 44 ~i~~Ay~vL~d~~~R~~yd~~g~~ 67 (354)
T TIGR02349 44 EINEAYEVLSDPEKRAQYDQFGHA 67 (354)
T ss_pred HHHHHHHHhhChHHHHhhhhcccc
Confidence 589999999999999999999974
No 54
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=61.11 E-value=4.8 Score=43.04 Aligned_cols=23 Identities=22% Similarity=0.572 Sum_probs=21.6
Q ss_pred hhhhHhhhccCHHHHHhHHHhCC
Q psy12216 2 KLTKAYQALTDEESRRNFEKYGN 24 (646)
Q Consensus 2 ~ItKAYkaLTDe~~R~N~ekYGn 24 (646)
+|+.||+.|.|+..|..|..||.
T Consensus 48 ~i~~Ay~~L~~~~kr~~yD~~g~ 70 (306)
T PRK10266 48 EVAEAWEVLSDEQRRAEYDQLWQ 70 (306)
T ss_pred HHHHHHHHhhhHHHHHHHHHhhc
Confidence 58999999999999999999984
No 55
>PRK07758 hypothetical protein; Provisional
Probab=60.57 E-value=22 Score=31.54 Aligned_cols=52 Identities=12% Similarity=0.206 Sum_probs=41.4
Q ss_pred CCCCCHHHHHHHhhhccCCCCHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHccC
Q psy12216 244 LPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNM 298 (646)
Q Consensus 244 LPh~~~e~l~~le~~k~~i~tl~~L~~l~~~er~~LL~~ls~~q~~ev~~vl~~~ 298 (646)
+|.++--.++.| ...+|.++.+|+.++.++..+ ++++++.-+.+|...+..+
T Consensus 39 ~~~LSvRA~N~L--k~AGI~TL~dLv~~te~ELl~-iknlGkKSL~EIkekL~E~ 90 (95)
T PRK07758 39 LSLLSAPARRAL--EHHGIHTVEELSKYSEKEILK-LHGMGPASLPKLRKALEES 90 (95)
T ss_pred CccccHHHHHHH--HHcCCCcHHHHHcCCHHHHHH-ccCCCHHHHHHHHHHHHHc
Confidence 457777777777 456899999999999998876 4578999888888877653
No 56
>PF03118 RNA_pol_A_CTD: Bacterial RNA polymerase, alpha chain C terminal domain; InterPro: IPR011260 The core of the bacterial RNA polymerase (RNAP) consists of four subunits, two alpha, a beta and a beta', which are conserved from bacteria to mammals. The alpha subunit (RpoA) initiates RNAP assembly by dimerising to form a platform on which the beta subunits can interact. The alpha subunit consists of a N-terminal domain (NTD) and a C-terminal domain (CTD), connected by a short linker. The NTD is essential for RNAP assembly, while the CTD is necessary for transcription regulation, interacting with transcription factors and promoter upstream elements. In Escherichia coli, the catabolite activator protein (CAP or CRP) was shown to exert its effect through its interactions with the CTD, where CAP binding to CTD promotes RNAP binding to promoter DNA, thereby stimulating transcription initiation at class I CAP-dependent promoters. At class II CAP-dependent promoters, the interaction of CAP with CTD is one of multiple interactions involved in activation []. The CTD has a compact structure of four helices and two long arms enclosing its hydrophobic core, making its folding topology distinct from most other binding proteins. The upstream promoter element-binding site is formed from helices 1 and 4 [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3N97_B 1XS9_D 3K4G_A 3N4M_B 1COO_A 1LB2_E 3IYD_A 1Z3E_B 3GFK_B 3IHQ_B ....
Probab=59.34 E-value=20 Score=29.51 Aligned_cols=55 Identities=13% Similarity=0.236 Sum_probs=39.2
Q ss_pred CCCcccCCCCCHHHHHHHhhhccCCCCHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHc
Q psy12216 238 KNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLG 296 (646)
Q Consensus 238 ~spLlQLPh~~~e~l~~le~~k~~i~tl~~L~~l~~~er~~LL~~ls~~q~~ev~~vl~ 296 (646)
+.|+-.| +++......| .+.++.|+.+|+.++.++... +++++..-+.+|...++
T Consensus 11 ~~~I~~L-~LS~Ra~n~L--~~~~I~tv~dL~~~s~~~L~~-i~n~G~ksl~EI~~~L~ 65 (66)
T PF03118_consen 11 DTPIEDL-GLSVRAYNCL--KRAGIHTVGDLVKYSEEDLLK-IKNFGKKSLEEIKEKLK 65 (66)
T ss_dssp CSBGGGS-TSBHHHHHHH--HCTT--BHHHHHCS-HHHHHT-STTSHHHHHHHHHHHHH
T ss_pred cCcHHHh-CCCHHHHHHH--HHhCCcCHHHHHhCCHHHHHh-CCCCCHhHHHHHHHHHc
Confidence 3566666 4777777778 567899999999999887665 34788888888887764
No 57
>PRK14295 chaperone protein DnaJ; Provisional
Probab=59.05 E-value=5.6 Score=44.10 Aligned_cols=23 Identities=35% Similarity=0.953 Sum_probs=21.8
Q ss_pred hhhhHhhhccCHHHHHhHHH----hCC
Q psy12216 2 KLTKAYQALTDEESRRNFEK----YGN 24 (646)
Q Consensus 2 ~ItKAYkaLTDe~~R~N~ek----YGn 24 (646)
+|+.||+.|.|+..|..|.+ ||+
T Consensus 54 ~i~~Ay~vL~d~~~r~~yD~~~~~~G~ 80 (389)
T PRK14295 54 EISEAYDVLSDEKKRKEYDEARSLFGN 80 (389)
T ss_pred HHHHHHHHHCchhhHHHHHHHHhhhcc
Confidence 68999999999999999999 996
No 58
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=58.54 E-value=7.2 Score=37.68 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=20.3
Q ss_pred hhhhHhhhccCHHHHHhHHHhCC
Q psy12216 2 KLTKAYQALTDEESRRNFEKYGN 24 (646)
Q Consensus 2 ~ItKAYkaLTDe~~R~N~ekYGn 24 (646)
.|++||+.|+|+..|..|..-=|
T Consensus 41 ~iN~AY~~L~~p~~Ra~ylL~l~ 63 (157)
T TIGR00714 41 TLNQAYQTLKDPLMRAEYMLSLH 63 (157)
T ss_pred HHHHHHHHhCChhhhHHHHHHhc
Confidence 58999999999999999987544
No 59
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=55.37 E-value=22 Score=38.08 Aligned_cols=57 Identities=11% Similarity=0.160 Sum_probs=47.8
Q ss_pred CCCcccCCCCCHHHHHHHhhhccCCCCHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHcc
Q psy12216 238 KNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGN 297 (646)
Q Consensus 238 ~spLlQLPh~~~e~l~~le~~k~~i~tl~~L~~l~~~er~~LL~~ls~~q~~ev~~vl~~ 297 (646)
..||..+|++++..+++| .+.++.|+.+|..+++++..+++ +++++....+.+.++.
T Consensus 5 ~~~l~~l~gIg~~~a~~L--~~~Gi~t~~dl~~~~~~~L~~~~-g~~~~~a~~l~~~a~~ 61 (317)
T PRK04301 5 EKDLEDLPGVGPATAEKL--REAGYDTVEAIAVASPKELSEAA-GIGESTAAKIIEAARE 61 (317)
T ss_pred cccHhhcCCCCHHHHHHH--HHcCCCCHHHHHcCCHHHHHHhc-CCCHHHHHHHHHHHHH
Confidence 467899999999999999 55789999999999999988776 4677788888877764
No 60
>KOG0719|consensus
Probab=53.81 E-value=8.4 Score=39.56 Aligned_cols=25 Identities=48% Similarity=0.759 Sum_probs=22.5
Q ss_pred hhhhHhhhccCHHHHHhHHHhCCCC
Q psy12216 2 KLTKAYQALTDEESRRNFEKYGNPD 26 (646)
Q Consensus 2 ~ItKAYkaLTDe~~R~N~ekYGnPD 26 (646)
.++|||+.|||++.|.-|.+-|.-|
T Consensus 61 ~l~k~y~iLsDeekR~~YDetG~id 85 (264)
T KOG0719|consen 61 QLQKAYQILSDEEKRAVYDETGSID 85 (264)
T ss_pred HHHHHHHHhhHHHHHHHHhccCCCC
Confidence 4799999999999999999999544
No 61
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=49.77 E-value=11 Score=36.84 Aligned_cols=20 Identities=30% Similarity=0.494 Sum_probs=18.5
Q ss_pred hhhhHhhhccCHHHHHhHHH
Q psy12216 2 KLTKAYQALTDEESRRNFEK 21 (646)
Q Consensus 2 ~ItKAYkaLTDe~~R~N~ek 21 (646)
.|++||+.|+||..|..|..
T Consensus 52 ~in~AY~~L~dp~~Ra~YlL 71 (166)
T PRK01356 52 ELNNAYSTLKDALKRAEYML 71 (166)
T ss_pred HHHHHHHHhCCHHHHHHHHH
Confidence 58999999999999999974
No 62
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=46.60 E-value=14 Score=36.41 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=20.9
Q ss_pred hhhhHhhhccCHHHHHhHH--HhCCC
Q psy12216 2 KLTKAYQALTDEESRRNFE--KYGNP 25 (646)
Q Consensus 2 ~ItKAYkaLTDe~~R~N~e--kYGnP 25 (646)
.|++||++|+|+..|..|. .+|-+
T Consensus 58 ~iN~AY~tL~~p~~Ra~Yll~l~G~~ 83 (176)
T PRK03578 58 RANEAYQTLRDPLKRARYLLHLRGVD 83 (176)
T ss_pred HHHHHHHHhCChhhHHHHHHHhcCCC
Confidence 5899999999999999998 46753
No 63
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=45.99 E-value=13 Score=44.39 Aligned_cols=23 Identities=30% Similarity=0.735 Sum_probs=21.9
Q ss_pred hhhhHhhhccCHHHHHhHHHhCC
Q psy12216 2 KLTKAYQALTDEESRRNFEKYGN 24 (646)
Q Consensus 2 ~ItKAYkaLTDe~~R~N~ekYGn 24 (646)
.|++||+.|+|+..|..|..||+
T Consensus 46 eINEAYEVLSDP~KRa~YD~fG~ 68 (871)
T TIGR03835 46 EINEANDVLSNPKKRANYDKYGH 68 (871)
T ss_pred HHHHHHHHhCCHHHHHHHhhhcc
Confidence 58999999999999999999996
No 64
>KOG0715|consensus
Probab=45.18 E-value=12 Score=39.79 Aligned_cols=24 Identities=38% Similarity=0.812 Sum_probs=22.3
Q ss_pred ChhhhHhhhccCHHHHHhHHHhCC
Q psy12216 1 MKLTKAYQALTDEESRRNFEKYGN 24 (646)
Q Consensus 1 i~ItKAYkaLTDe~~R~N~ekYGn 24 (646)
++|..||+.|.|++.|.=|..||.
T Consensus 86 ~eI~~AYEiLsd~eKR~~YD~~~~ 109 (288)
T KOG0715|consen 86 KEISEAYEILSDEEKRQEYDVYGL 109 (288)
T ss_pred HHHHHHHHHhcCHHHHHHHHHhhh
Confidence 479999999999999999999995
No 65
>KOG1583|consensus
Probab=45.02 E-value=3 Score=43.84 Aligned_cols=61 Identities=21% Similarity=0.417 Sum_probs=44.4
Q ss_pred hhhhHhhhccCHHHHHhHHHhC-CCCCCCccceeeccccchhccCC--CeEEEeeee-----hhhcccccch
Q psy12216 2 KLTKAYQALTDEESRRNFEKYG-NPDGPGAMSFGIALPSYIVEKEN--SVWVLGLYA-----LVFMVALPTA 65 (646)
Q Consensus 2 ~ItKAYkaLTDe~~R~N~ekYG-nPDGpq~~s~GIALP~wlve~~n--~~~VL~~Y~-----llfgvvLP~~ 65 (646)
.|.-||=.+..|.+ |+||| ||+--==.+|-+-||-|+.-.++ +-|.++.-. -.+|+.+|..
T Consensus 173 l~~sa~mgiyqE~~---Y~kyGKh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~ 241 (330)
T KOG1583|consen 173 LLLSAYMGIYQETT---YQKYGKHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSM 241 (330)
T ss_pred HHHHHHHHHHHHHH---HHHhcCChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCccccHH
Confidence 36678888999955 89999 99988888999999999987765 223222211 1466778876
No 66
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=44.73 E-value=43 Score=35.57 Aligned_cols=53 Identities=11% Similarity=0.202 Sum_probs=43.4
Q ss_pred cccCCCCCHHHHHHHhhhccCCCCHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHc
Q psy12216 241 LLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLG 296 (646)
Q Consensus 241 LlQLPh~~~e~l~~le~~k~~i~tl~~L~~l~~~er~~LL~~ls~~q~~ev~~vl~ 296 (646)
|.++|++++..+++| .+.++.|+.+|...+.+++..++. ++++....+...+.
T Consensus 1 l~~i~gig~~~~~~L--~~~Gi~ti~dl~~~~~~~L~~~~g-~~~~~a~~l~~~~~ 53 (310)
T TIGR02236 1 LEDLPGVGPATAEKL--REAGYDTFEAIAVASPKELSEIAG-ISEGTAAKIIQAAR 53 (310)
T ss_pred CcccCCCCHHHHHHH--HHcCCCCHHHHHcCCHHHHHhccC-CCHHHHHHHHHHHH
Confidence 457899999999999 456799999999999999887764 67777777776665
No 67
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=44.68 E-value=13 Score=36.51 Aligned_cols=19 Identities=26% Similarity=0.457 Sum_probs=17.8
Q ss_pred hhhhHhhhccCHHHHHhHH
Q psy12216 2 KLTKAYQALTDEESRRNFE 20 (646)
Q Consensus 2 ~ItKAYkaLTDe~~R~N~e 20 (646)
.|++||+.|+|+..|..|.
T Consensus 53 ~iN~AY~~L~dp~~Ra~Yl 71 (171)
T PRK05014 53 TINDAYQTLKHPLKRAEYL 71 (171)
T ss_pred HHHHHHHHHCChhHHHHHH
Confidence 5899999999999999996
No 68
>KOG0691|consensus
Probab=43.87 E-value=15 Score=39.31 Aligned_cols=23 Identities=43% Similarity=0.784 Sum_probs=21.3
Q ss_pred hhhhHhhhccCHHHHHhHHHhCC
Q psy12216 2 KLTKAYQALTDEESRRNFEKYGN 24 (646)
Q Consensus 2 ~ItKAYkaLTDe~~R~N~ekYGn 24 (646)
.+..||+.|+|+..|.-|.+||.
T Consensus 50 ~L~eAy~VL~D~~~R~~YDk~~k 72 (296)
T KOG0691|consen 50 ELSEAYEVLSDEESRAAYDKLRK 72 (296)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhh
Confidence 57899999999999999999994
No 69
>PTZ00035 Rad51 protein; Provisional
Probab=42.35 E-value=46 Score=36.15 Aligned_cols=57 Identities=11% Similarity=0.149 Sum_probs=47.8
Q ss_pred ccCCCCCHHHHHHHhhhccCCCCHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHccCCce
Q psy12216 242 LQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMPYV 301 (646)
Q Consensus 242 lQLPh~~~e~l~~le~~k~~i~tl~~L~~l~~~er~~LL~~ls~~q~~ev~~vl~~~P~L 301 (646)
+|-|++++..+++| ++.++.|+.+++..++.++..+. +++.....++...++.+...
T Consensus 26 l~~~g~~~~~~~kL--~~~g~~t~~~~~~~~~~~L~~~~-gis~~~~~~i~~~~~~~~~~ 82 (337)
T PTZ00035 26 LQSAGINAADIKKL--KEAGICTVESVAYATKKDLCNIK-GISEAKVEKIKEAASKLVPM 82 (337)
T ss_pred HhcCCCCHHHHHHH--HHcCCCcHHHHHhCCHHHHHHhh-CCCHHHHHHHHHHHHHhccc
Confidence 34478999999999 55789999999999999988765 58999999999888887543
No 70
>KOG3192|consensus
Probab=41.55 E-value=15 Score=35.41 Aligned_cols=20 Identities=35% Similarity=0.531 Sum_probs=18.0
Q ss_pred hhhhHhhhccCHHHHHhHHH
Q psy12216 2 KLTKAYQALTDEESRRNFEK 21 (646)
Q Consensus 2 ~ItKAYkaLTDe~~R~N~ek 21 (646)
.++|||.+|+|+-+|.-|..
T Consensus 60 ~lnkAY~TLk~pL~RA~Yil 79 (168)
T KOG3192|consen 60 ELNKAYDTLKDPLARARYLL 79 (168)
T ss_pred HHHHHHHHHHhHHHHHHHHH
Confidence 47999999999999999873
No 71
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=40.23 E-value=18 Score=35.55 Aligned_cols=20 Identities=25% Similarity=0.164 Sum_probs=18.4
Q ss_pred hhhhHhhhccCHHHHHhHHH
Q psy12216 2 KLTKAYQALTDEESRRNFEK 21 (646)
Q Consensus 2 ~ItKAYkaLTDe~~R~N~ek 21 (646)
.|++||++|.||-.|.-|.-
T Consensus 54 ~iN~AY~tLkdPl~RA~YLL 73 (173)
T PRK01773 54 EVNDALQILKDPILRAEAII 73 (173)
T ss_pred HHHHHHHHHCChHHHHHHHH
Confidence 58999999999999999985
No 72
>PF12165 DUF3594: Domain of unknown function (DUF3594); InterPro: IPR021998 This presumed domain is functionally uncharacterised.This domain family is found in eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00628 from PFAM.
Probab=38.58 E-value=9.2 Score=35.55 Aligned_cols=34 Identities=35% Similarity=0.627 Sum_probs=24.4
Q ss_pred hhhccCHH---------HHHhHHHhCCCCCCCccceeeccccchhcc
Q psy12216 7 YQALTDEE---------SRRNFEKYGNPDGPGAMSFGIALPSYIVEK 44 (646)
Q Consensus 7 YkaLTDe~---------~R~N~ekYGnPDGpq~~s~GIALP~wlve~ 44 (646)
-+|||.++ -++|.=.||||||- --+.||.-.|--
T Consensus 18 v~ALT~dve~Fy~~CDP~kenLCLYG~p~~~----WeV~lP~eevPp 60 (137)
T PF12165_consen 18 VRALTTDVEEFYQQCDPEKENLCLYGHPDGT----WEVNLPAEEVPP 60 (137)
T ss_pred HHHHHHHHHHHHHhcCccccceEEecCCCCC----eEEeCChHhCCC
Confidence 35777654 47999999999994 446677666643
No 73
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=38.17 E-value=20 Score=35.35 Aligned_cols=20 Identities=30% Similarity=0.456 Sum_probs=18.5
Q ss_pred hhhhHhhhccCHHHHHhHHH
Q psy12216 2 KLTKAYQALTDEESRRNFEK 21 (646)
Q Consensus 2 ~ItKAYkaLTDe~~R~N~ek 21 (646)
.|++||+.|+||..|..|.-
T Consensus 56 ~IN~AY~~L~~p~~Ra~YlL 75 (173)
T PRK00294 56 SLNEAYQTLKSPPRRARYLL 75 (173)
T ss_pred HHHHHHHHhCChhhhHHHHH
Confidence 58999999999999999984
No 74
>PRK12766 50S ribosomal protein L32e; Provisional
Probab=36.74 E-value=90 Score=32.24 Aligned_cols=55 Identities=11% Similarity=0.099 Sum_probs=46.1
Q ss_pred CCcccCCCCCHHHHHHHhhhccCCCCHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHc
Q psy12216 239 NPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLG 296 (646)
Q Consensus 239 spLlQLPh~~~e~l~~le~~k~~i~tl~~L~~l~~~er~~LL~~ls~~q~~ev~~vl~ 296 (646)
.+|.++|+|++..++.|- ..+..|+.++...+.+++..+ .+++......|...++
T Consensus 3 ~~L~~IpGIG~krakkLl--~~GF~Sve~Ik~AS~eEL~~V-~GIg~k~AekI~e~l~ 57 (232)
T PRK12766 3 EELEDISGVGPSKAEALR--EAGFESVEDVRAADQSELAEV-DGIGNALAARIKADVG 57 (232)
T ss_pred cccccCCCcCHHHHHHHH--HcCCCCHHHHHhCCHHHHHHc-cCCCHHHHHHHHHHhc
Confidence 468999999999999984 456899999999998888764 3578889999988877
No 75
>PF11731 Cdd1: Pathogenicity locus; InterPro: IPR021725 Cdd1 is expressed as part of the pathogenicity locus operon in several different orders of bacteria []. Many members of the family are annotated as being putative mitomycin resistance proteins but this could not be confirmed.
Probab=36.31 E-value=32 Score=30.49 Aligned_cols=38 Identities=16% Similarity=0.183 Sum_probs=32.4
Q ss_pred CCcccCCCCCHHHHHHHhhhccCCCCHHHHHcCCHHHHHH
Q psy12216 239 NPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRS 278 (646)
Q Consensus 239 spLlQLPh~~~e~l~~le~~k~~i~tl~~L~~l~~~er~~ 278 (646)
+.|.+||.|++.+.+-| ..-++.++.+|...++.+.-.
T Consensus 12 ~~L~~iP~IG~a~a~DL--~~LGi~s~~~L~g~dP~~Ly~ 49 (93)
T PF11731_consen 12 SDLTDIPNIGKATAEDL--RLLGIRSPADLKGRDPEELYE 49 (93)
T ss_pred HHHhcCCCccHHHHHHH--HHcCCCCHHHHhCCCHHHHHH
Confidence 56899999999998888 457899999999999887643
No 76
>PF02404 SCF: Stem cell factor; InterPro: IPR003452 Stem cell factor (SCF) is a homodimer involved in hematopoiesis. SCF binds to and activates the SCF receptor (SCFR), a receptor tyrosine kinase. SCF stimulates the proliferation of mast cells and is able to augment the proliferation of both myeloid and lymphoid hematopoietic progenitors in bone marrow culture. It also mediates cell-cell adhesion and acts synergistically with other cytokines. SCF is a type I membrane protein, but is also found in a secretable, soluble form. The crystal structure of human SCF has been resolved and a potential receptor-binding site identified [].; GO: 0005173 stem cell factor receptor binding, 0007155 cell adhesion, 0016020 membrane; PDB: 1EXZ_A 1SCF_D 2E9W_C 2O26_A 2O27_A.
Probab=35.68 E-value=12 Score=38.83 Aligned_cols=54 Identities=28% Similarity=0.333 Sum_probs=0.0
Q ss_pred hccCHHHHHhHHHhCCCCCCCccceeeccccchhccCCCeEEEeeeehhhcccccchhhhhhhcccccc
Q psy12216 9 ALTDEESRRNFEKYGNPDGPGAMSFGIALPSYIVEKENSVWVLGLYALVFMVALPTAVGMWWYKSIRYT 77 (646)
Q Consensus 9 aLTDe~~R~N~ekYGnPDGpq~~s~GIALP~wlve~~n~~~VL~~Y~llfgvvLP~~Vg~ww~~s~kyt 77 (646)
.|+...++-|=.--|-++|+.-.-..||||++ +.|++|+++=.+ +||.+.++.+
T Consensus 192 slrndsSssN~ka~g~~~~~slq~~~iAL~sl-------------~SLVIGFvlG~l--~WKkkq~~~~ 245 (273)
T PF02404_consen 192 SLRNDSSSSNRKASGSISDSSLQWPAIALPSL-------------FSLVIGFVLGAL--YWKKKQRSLT 245 (273)
T ss_dssp ---------------------------------------------------------------------
T ss_pred cccccccccchhhcCCCCCccchhHHHHHHHH-------------HHHHHHHHHHHH--HHHhhccccc
Confidence 57777788888777999999887788999987 344444443222 6887666444
No 77
>KOG2002|consensus
Probab=35.27 E-value=30 Score=42.16 Aligned_cols=7 Identities=29% Similarity=0.596 Sum_probs=2.6
Q ss_pred hHhhhcc
Q psy12216 5 KAYQALT 11 (646)
Q Consensus 5 KAYkaLT 11 (646)
++|-|..
T Consensus 315 Rs~Ha~G 321 (1018)
T KOG2002|consen 315 RSYHAQG 321 (1018)
T ss_pred HHHHhhc
Confidence 3333333
No 78
>KOG0526|consensus
Probab=33.33 E-value=35 Score=39.02 Aligned_cols=14 Identities=14% Similarity=0.264 Sum_probs=6.8
Q ss_pred cccccccccCCCCC
Q psy12216 489 DDTIKVQFLEPSKE 502 (646)
Q Consensus 489 ~~~~~~~~~~~~~~ 502 (646)
++...++|...+.+
T Consensus 465 ~~e~Dedf~~~~~~ 478 (615)
T KOG0526|consen 465 DEEEDEDFKPGEED 478 (615)
T ss_pred chhhhhhcccCccc
Confidence 34455556554433
No 79
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=33.25 E-value=83 Score=33.88 Aligned_cols=54 Identities=9% Similarity=0.161 Sum_probs=44.6
Q ss_pred ccCCCCCHHHHHHHhhhccCCCCHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHccC
Q psy12216 242 LQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNM 298 (646)
Q Consensus 242 lQLPh~~~e~l~~le~~k~~i~tl~~L~~l~~~er~~LL~~ls~~q~~ev~~vl~~~ 298 (646)
+|-+++++..+.+| .+.++.|+.+++..++.++.++. +++......+...++.+
T Consensus 4 ~~~~~~~~~~~~~l--~~~g~~t~~~~~~~~~~~L~~i~-~ls~~~~~~~~~~~~~~ 57 (316)
T TIGR02239 4 LEGNGITAADIKKL--QEAGLHTVESVAYAPKKQLLEIK-GISEAKADKILAEAAKL 57 (316)
T ss_pred hhcCCCCHHHHHHH--HHcCCCcHHHHHhCCHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence 45567999999999 55789999999999999998876 58888888888777754
No 80
>KOG1189|consensus
Probab=31.56 E-value=33 Score=40.73 Aligned_cols=13 Identities=15% Similarity=0.670 Sum_probs=9.1
Q ss_pred CChhhHHHHHhhh
Q psy12216 625 DDDDDWEKYQTGL 637 (646)
Q Consensus 625 ~~~~d~~~~~~~~ 637 (646)
.+.+||..|...-
T Consensus 928 E~gkdwdele~ea 940 (960)
T KOG1189|consen 928 ESGKDWDELEREA 940 (960)
T ss_pred hhccchhhhHHHH
Confidence 4668898876554
No 81
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=31.51 E-value=88 Score=33.65 Aligned_cols=56 Identities=7% Similarity=0.049 Sum_probs=46.2
Q ss_pred cCCCCCHHHHHHHhhhccCCCCHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHccCCce
Q psy12216 243 QLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMPYV 301 (646)
Q Consensus 243 QLPh~~~e~l~~le~~k~~i~tl~~L~~l~~~er~~LL~~ls~~q~~ev~~vl~~~P~L 301 (646)
|-+++++..+++| ++.++.|+.+++..++.++..+. ++++.....+.+.+......
T Consensus 5 ~~~g~~~~~~~~L--~~~g~~t~~~~~~~~~~~L~~~~-gls~~~~~~i~~~~~~~~~~ 60 (313)
T TIGR02238 5 QAHGINAADIKKL--KSAGICTVNGVIMTTRRALCKIK-GLSEAKVDKIKEAASKIINP 60 (313)
T ss_pred hcCCCCHHHHHHH--HHcCCCcHHHHHhCCHHHHHHhc-CCCHHHHHHHHHHHHhhhcc
Confidence 3456999999999 55789999999999999888765 58999999999888886433
No 82
>PRK02515 psbU photosystem II complex extrinsic protein precursor U; Provisional
Probab=30.71 E-value=93 Score=29.33 Aligned_cols=50 Identities=12% Similarity=0.109 Sum_probs=37.7
Q ss_pred CCcccCCCCCHHHHHHHhhhccCCCCHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHccC
Q psy12216 239 NPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNM 298 (646)
Q Consensus 239 spLlQLPh~~~e~l~~le~~k~~i~tl~~L~~l~~~er~~LL~~ls~~q~~ev~~vl~~~ 298 (646)
..|.|||+|.+...+++.. ..+..+++||... .++++++.+.+.+....|
T Consensus 61 ~el~~lpGigP~~A~~IV~-nGpf~sveDL~~V---------~GIgekqk~~l~k~~~~f 110 (132)
T PRK02515 61 RAFRQFPGMYPTLAGKIVK-NAPYDSVEDVLNL---------PGLSERQKELLEANLDNF 110 (132)
T ss_pred HHHHHCCCCCHHHHHHHHH-CCCCCCHHHHHcC---------CCCCHHHHHHHHHhhcce
Confidence 5688999999999999874 3457889998865 357777777777666654
No 83
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=29.52 E-value=85 Score=38.32 Aligned_cols=52 Identities=23% Similarity=0.432 Sum_probs=44.0
Q ss_pred cccCCCCCHHHHHHHhhhccCCCCHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHcc
Q psy12216 241 LLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGN 297 (646)
Q Consensus 241 LlQLPh~~~e~l~~le~~k~~i~tl~~L~~l~~~er~~LL~~ls~~q~~ev~~vl~~ 297 (646)
|+.||++++..++.|-. ...++.+|+.++.++...+++ +++.++.|.+|++.
T Consensus 759 L~~lPgI~~~~a~~ll~---~f~si~~l~~as~eeL~~~iG--~~~~A~~i~~fl~~ 810 (814)
T TIGR00596 759 LLKLPGVTKKNYRNLRK---KVKSIRELAKLSQNELNELIG--DEEAAKRLYDFLRT 810 (814)
T ss_pred HHHCCCCCHHHHHHHHH---HcCCHHHHHhCCHHHHHHHhC--CHHHHHHHHHHhcc
Confidence 67899999999988854 478999999999999888754 58889999999875
No 84
>PF12826 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS_A 1V9P_B.
Probab=29.07 E-value=90 Score=25.28 Aligned_cols=51 Identities=16% Similarity=0.170 Sum_probs=32.3
Q ss_pred ccCCCCCHHHHHHHhhhccCCCCHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHc
Q psy12216 242 LQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLG 296 (646)
Q Consensus 242 lQLPh~~~e~l~~le~~k~~i~tl~~L~~l~~~er~~LL~~ls~~q~~ev~~vl~ 296 (646)
|.+||+.+...+.|.+ .-.+++.|+..+.++... +.++++.-.+.+..+.+
T Consensus 6 LGI~~VG~~~ak~L~~---~f~sl~~l~~a~~e~L~~-i~gIG~~~A~si~~ff~ 56 (64)
T PF12826_consen 6 LGIPGVGEKTAKLLAK---HFGSLEALMNASVEELSA-IPGIGPKIAQSIYEFFQ 56 (64)
T ss_dssp CTSTT--HHHHHHHHH---CCSCHHHHCC--HHHHCT-STT--HHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHH---HcCCHHHHHHcCHHHHhc-cCCcCHHHHHHHHHHHC
Confidence 5789999999998853 356899998887776553 23567777777777654
No 85
>PRK01216 DNA polymerase IV; Validated
Probab=29.06 E-value=1.4e+02 Score=32.73 Aligned_cols=61 Identities=10% Similarity=0.177 Sum_probs=45.6
Q ss_pred HHHHhccCCCCCCcccCCCCCHHHHHHHhhhccCCCCHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHH
Q psy12216 228 PMIVQGMWDFKNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVL 295 (646)
Q Consensus 228 QmIvQa~W~~~spLlQLPh~~~e~l~~le~~k~~i~tl~~L~~l~~~er~~LL~~ls~~q~~ev~~vl 295 (646)
+.+.+.+|+ -|+..||++......+| .+.++.|+.+|..++.......+ +...+..+...+
T Consensus 169 ~~~~~~L~~--LPi~~l~giG~~~~~~L--~~~Gi~TigdL~~~~~~~L~~rf---G~~~~~~L~~~a 229 (351)
T PRK01216 169 EEVKRFINE--LDIADIPGIGDITAEKL--KKLGVNKLVDTLRIEFDELKGII---GEAKAKYLFSLA 229 (351)
T ss_pred HHHHHHHhc--CCcccccCCCHHHHHHH--HHcCCCcHHHHhcCCHHHHHHHH---CHHHHHHHHHHh
Confidence 345556665 59999999999888888 55789999999999987776655 344455666654
No 86
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=28.69 E-value=87 Score=34.27 Aligned_cols=62 Identities=5% Similarity=-0.013 Sum_probs=48.3
Q ss_pred CCCCCCcccCCCCCHHHHHHHhhhccCCCCHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHccCC
Q psy12216 235 WDFKNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMP 299 (646)
Q Consensus 235 W~~~spLlQLPh~~~e~l~~le~~k~~i~tl~~L~~l~~~er~~LL~~ls~~q~~ev~~vl~~~P 299 (646)
|+....-+|-+++++..+++| +..++.|+.+++..++.++..+. ++++.....++..++.+-
T Consensus 27 ~~~~~~~l~~~g~~~~~~~kL--~~~g~~tv~~~~~~~~~~L~~~~-g~s~~~~~ki~~~a~~~~ 88 (344)
T PLN03187 27 LFESIDKLISQGINAGDVKKL--QDAGIYTCNGLMMHTKKNLTGIK-GLSEAKVDKICEAAEKLL 88 (344)
T ss_pred cccCHHHHhhCCCCHHHHHHH--HHcCCCcHHHHHhCCHHHHHHhc-CCCHHHHHHHHHHHHHhh
Confidence 333333344477999999999 55789999999999998887754 689999999888877764
No 87
>PHA03102 Small T antigen; Reviewed
Probab=28.51 E-value=24 Score=34.07 Aligned_cols=23 Identities=9% Similarity=0.055 Sum_probs=21.4
Q ss_pred hhhhHhhhccCHHHHHhHHHhCC
Q psy12216 2 KLTKAYQALTDEESRRNFEKYGN 24 (646)
Q Consensus 2 ~ItKAYkaLTDe~~R~N~ekYGn 24 (646)
.|+.||+.|.|+..|..|..||-
T Consensus 48 ~in~Ay~~L~d~~~r~~yd~~g~ 70 (153)
T PHA03102 48 ELNTLYKKFRESVKSLRDLDGEE 70 (153)
T ss_pred HHHHHHHHHhhHHHhccccccCC
Confidence 58999999999999999999994
No 88
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=28.43 E-value=38 Score=39.48 Aligned_cols=13 Identities=23% Similarity=0.869 Sum_probs=8.8
Q ss_pred CChhhHHHHHhhh
Q psy12216 625 DDDDDWEKYQTGL 637 (646)
Q Consensus 625 ~~~~d~~~~~~~~ 637 (646)
.+.+||+.|..+-
T Consensus 978 E~gEDwdele~ka 990 (1001)
T COG5406 978 EDGEDWDELESKA 990 (1001)
T ss_pred ccccchhhHhhhh
Confidence 3568999876543
No 89
>PF07225 NDUF_B4: NADH-ubiquinone oxidoreductase B15 subunit (NDUFB4); InterPro: IPR009866 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This family contains human NADH-ubiquinone oxidoreductase subunit NDUFB4 and related sequences.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0005739 mitochondrion
Probab=27.91 E-value=19 Score=33.62 Aligned_cols=61 Identities=21% Similarity=0.271 Sum_probs=40.2
Q ss_pred hccCHHHHHhHHHhCCCCCCCccceeeccccch-hccCCC--e----EEEeeeehhhcccccchhhhhhh
Q psy12216 9 ALTDEESRRNFEKYGNPDGPGAMSFGIALPSYI-VEKENS--V----WVLGLYALVFMVALPTAVGMWWY 71 (646)
Q Consensus 9 aLTDe~~R~N~ekYGnPDGpq~~s~GIALP~wl-ve~~n~--~----~VL~~Y~llfgvvLP~~Vg~ww~ 71 (646)
|+.+.-.|+=+.+|+||. +.++-+-=||.+|- .-.-|. . .-.+++++++ +++|.+++.|.+
T Consensus 34 a~Ra~Lk~eYlkq~~nP~-~~gli~DPAL~Rw~~a~~~~~y~~FRpTPktsllg~~~-~v~P~i~~~~~~ 101 (125)
T PF07225_consen 34 AIRARLKREYLKQYNNPH-RKGLIFDPALQRWAYARAVNIYEYFRPTPKTSLLGLGF-GVVPLIFYYYVL 101 (125)
T ss_pred HHHHHHHHHHHHHcCCCC-CCCccCChHHHHHHHHHHhCcccccccCchHHHHHHHH-HHHHHHHHHhhh
Confidence 556666788899999999 88888999999994 332121 1 1223444444 555888866654
No 90
>PHA03420 E4 protein; Provisional
Probab=27.57 E-value=66 Score=29.69 Aligned_cols=24 Identities=21% Similarity=0.029 Sum_probs=20.8
Q ss_pred CcccccCceEEEEEEEEecCCccc
Q psy12216 463 TTEYTAGAIITVTCTLMRKPMSVL 486 (646)
Q Consensus 463 ~~~i~~g~ivt~~v~l~r~~~~~~ 486 (646)
+.+|-+|+-||||||+.-.|=+||
T Consensus 107 E~ViPVedsVTVTVTvgv~NGpEl 130 (137)
T PHA03420 107 EVVIPVEDSVTVTVTVGVGNGPEL 130 (137)
T ss_pred eeEEecCCCeEEEEEEecCCCCeE
Confidence 478999999999999998887766
No 91
>PRK14133 DNA polymerase IV; Provisional
Probab=27.51 E-value=1.4e+02 Score=32.30 Aligned_cols=60 Identities=8% Similarity=0.087 Sum_probs=44.2
Q ss_pred HHHhccCCCCCCcccCCCCCHHHHHHHhhhccCCCCHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHc
Q psy12216 229 MIVQGMWDFKNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLG 296 (646)
Q Consensus 229 mIvQa~W~~~spLlQLPh~~~e~l~~le~~k~~i~tl~~L~~l~~~er~~LL~~ls~~q~~ev~~vl~ 296 (646)
.+.+.+| .-|+..||++......+| .+.++.++.+|..++.......++ . .+..++..+.
T Consensus 165 ~~~~~L~--~lpv~~l~gig~~~~~~L--~~~Gi~ti~dl~~l~~~~L~~rfG---~-~g~~l~~~a~ 224 (347)
T PRK14133 165 MIPDILK--PLPISKVHGIGKKSVEKL--NNIGIYTIEDLLKLSREFLIEYFG---K-FGVEIYERIR 224 (347)
T ss_pred HHHHHHH--hCCccccCCCCHHHHHHH--HHcCCccHHHHhhCCHHHHHHHHh---H-HHHHHHHHhC
Confidence 3444555 369999999999999999 557899999999999887776654 2 3444555443
No 92
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=26.63 E-value=20 Score=32.82 Aligned_cols=20 Identities=15% Similarity=0.484 Sum_probs=0.0
Q ss_pred eehhhcccccchhhhhhhcccc
Q psy12216 54 YALVFMVALPTAVGMWWYKSIR 75 (646)
Q Consensus 54 Y~llfgvvLP~~Vg~ww~~s~k 75 (646)
+.+++|++ .++|.|+++-|+
T Consensus 32 L~VILgiL--LliGCWYckRRS 51 (118)
T PF14991_consen 32 LIVILGIL--LLIGCWYCKRRS 51 (118)
T ss_dssp ----------------------
T ss_pred HHHHHHHH--HHHhheeeeecc
Confidence 34445554 367888865443
No 93
>KOG2002|consensus
Probab=25.89 E-value=45 Score=40.74 Aligned_cols=16 Identities=6% Similarity=0.160 Sum_probs=7.7
Q ss_pred HHHhhhHHHHHHHHHH
Q psy12216 184 IVKKCPYLLQEMVTCI 199 (646)
Q Consensus 184 VL~~a~RLl~AmidIa 199 (646)
++...|+..+|.++++
T Consensus 406 ~~~~~~~d~~a~l~la 421 (1018)
T KOG2002|consen 406 VLEQTPVDSEAWLELA 421 (1018)
T ss_pred HHhcccccHHHHHHHH
Confidence 3444444455555544
No 94
>TIGR01954 nusA_Cterm_rpt transcription termination factor NusA, C-terminal duplication. NusA is a bacterial transcription termination factor. It is named for its interaction with phage lambda protein N, as part of the N utilization substance. Some members of the NusA family have a long C-terminal extension. This model represents an acidic 50-residue region found in two copies toward the C-terminus of most Proteobacterial NusA proteins, spaced about 26 residues apart. Analogous C-terminal extensions in some other bacterial lineages lack apparent homology but appear similarly acidic.
Probab=24.80 E-value=1.7e+02 Score=21.85 Aligned_cols=47 Identities=9% Similarity=0.191 Sum_probs=35.4
Q ss_pred CCHHHHHHHhhhccCCCCHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHc
Q psy12216 247 VTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLG 296 (646)
Q Consensus 247 ~~~e~l~~le~~k~~i~tl~~L~~l~~~er~~LL~~ls~~q~~ev~~vl~ 296 (646)
+++..+.++ ...++.++.++...++++...+ .++++.....+...++
T Consensus 1 i~~~~~~~L--~~~G~~s~e~la~~~~~eL~~i-~g~~~e~a~~ii~~a~ 47 (50)
T TIGR01954 1 IDEEIAQLL--VEEGFTTVEDLAYVPIDELLSI-EGFDEETAKELINRAR 47 (50)
T ss_pred CCHHHHHHH--HHcCCCCHHHHHccCHHHHhcC-CCCCHHHHHHHHHHHH
Confidence 355667777 4467999999999999988775 3588888877776654
No 95
>PRK03348 DNA polymerase IV; Provisional
Probab=24.63 E-value=1.6e+02 Score=33.42 Aligned_cols=58 Identities=9% Similarity=0.096 Sum_probs=45.9
Q ss_pred CCCcccCCCCCHHHHHHHhhhccCCCCHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHccCCc
Q psy12216 238 KNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMPY 300 (646)
Q Consensus 238 ~spLlQLPh~~~e~l~~le~~k~~i~tl~~L~~l~~~er~~LL~~ls~~q~~ev~~vl~~~P~ 300 (646)
..|+..||++......+| .+.++.|+.+|..++..+....| +...+..+...+.-...
T Consensus 179 ~LPv~~L~GIG~~t~~~L--~~lGI~TigDLa~l~~~~L~~~f---G~~~g~~L~~~a~G~d~ 236 (454)
T PRK03348 179 PLPVRRLWGIGPVTEEKL--HRLGIETIGDLAALSEAEVANLL---GATVGPALHRLARGIDD 236 (454)
T ss_pred hCCccccCCCCHHHHHHH--HHcCCccHHHHhcCCHHHHHHHH---CHHHHHHHHHHHcCCCC
Confidence 469999999999999999 56789999999999988877655 44566677776666543
No 96
>PF06514 PsbU: Photosystem II 12 kDa extrinsic protein (PsbU); InterPro: IPR010527 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII extrinsic protein PsbU, which forms part of the OEC in cyanobacteria and red algae. PsbU acts to stabilise the oxygen-evolving machinery of PSII against heat-induced inactivation, which is crucial for cellular thermo-tolerance [].; GO: 0015979 photosynthesis, 0042549 photosystem II stabilization, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 3BZ1_U 3KZI_U 3PRQ_U 2AXT_u 3BZ2_U 4FBY_U 3PRR_U 1S5L_U 3A0H_U 3ARC_U ....
Probab=24.44 E-value=62 Score=28.64 Aligned_cols=56 Identities=13% Similarity=0.105 Sum_probs=34.6
Q ss_pred CCcccCCCCCHHHHHHHhhhccCCCCHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHccCCceeEE
Q psy12216 239 NPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMPYVDLH 304 (646)
Q Consensus 239 spLlQLPh~~~e~l~~le~~k~~i~tl~~L~~l~~~er~~LL~~ls~~q~~ev~~vl~~~P~L~I~ 304 (646)
..++|+|+|-+..+.+|... .+-.+++++++++ +|+++|.+-+.+....|=....+
T Consensus 23 r~f~~~pGmYPtlA~kIv~n-aPY~sveDvl~ip---------gLse~qK~~lk~~~~~Ftv~~p~ 78 (93)
T PF06514_consen 23 RAFRQFPGMYPTLAGKIVSN-APYKSVEDVLNIP---------GLSERQKALLKKYEDNFTVTPPE 78 (93)
T ss_dssp GGGCCSTTTTCCHHHHHHHS----SSGGGGCCST---------T--HHHHHHHHHHGGGEE-----
T ss_pred HHHHHCCCCCHHHHHHHHhC-CCCCCHHHHHhcc---------CCCHHHHHHHHHHhccceecCcH
Confidence 35789999999988888642 3567788877653 56777777777777776655554
No 97
>PRK03352 DNA polymerase IV; Validated
Probab=24.31 E-value=1.3e+02 Score=32.47 Aligned_cols=57 Identities=14% Similarity=0.008 Sum_probs=43.7
Q ss_pred CCCcccCCCCCHHHHHHHhhhccCCCCHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHccCC
Q psy12216 238 KNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMP 299 (646)
Q Consensus 238 ~spLlQLPh~~~e~l~~le~~k~~i~tl~~L~~l~~~er~~LL~~ls~~q~~ev~~vl~~~P 299 (646)
.-|+..||++.....++| .+.++.++.||..++.......+ +...+..+...++-.-
T Consensus 176 ~lpl~~l~gig~~~~~~L--~~~Gi~ti~dl~~l~~~~L~~~f---G~~~~~~l~~~a~G~d 232 (346)
T PRK03352 176 DRPTDALWGVGPKTAKRL--AALGITTVADLAAADPAELAATF---GPTTGPWLLLLARGGG 232 (346)
T ss_pred cCCHHHcCCCCHHHHHHH--HHcCCccHHHHhcCCHHHHHHHh---ChHHHHHHHHHhCCCC
Confidence 579999999999999999 56789999999999987776655 3444555666644443
No 98
>PRK02406 DNA polymerase IV; Validated
Probab=23.94 E-value=1.7e+02 Score=31.56 Aligned_cols=63 Identities=8% Similarity=-0.025 Sum_probs=46.6
Q ss_pred HHHhccCCCCCCcccCCCCCHHHHHHHhhhccCCCCHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHccCC
Q psy12216 229 MIVQGMWDFKNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMP 299 (646)
Q Consensus 229 mIvQa~W~~~spLlQLPh~~~e~l~~le~~k~~i~tl~~L~~l~~~er~~LL~~ls~~q~~ev~~vl~~~P 299 (646)
.+.+.+|+ .|+..||++......+| .+.++.|+.+|..++.......++ ..+..++..+.-.-
T Consensus 160 ~~~~~L~~--lpi~~l~giG~~~~~~L--~~~Gi~ti~dl~~l~~~~L~~~fG----~~~~~l~~~a~G~d 222 (343)
T PRK02406 160 EVDAFLAT--LPVEKIPGVGKVTAEKL--HALGIYTCADLQKYDLAELIRHFG----KFGRRLYERARGID 222 (343)
T ss_pred HHHHHHHc--CCcchhcCCCHHHHHHH--HHcCCCcHHHHHhCCHHHHHHHHh----HHHHHHHHHhCCCC
Confidence 33444444 69999999999999999 557899999999999888776664 24555666655543
No 99
>PF04889 Cwf_Cwc_15: Cwf15/Cwc15 cell cycle control protein; InterPro: IPR006973 This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing [].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=23.90 E-value=54 Score=34.12 Aligned_cols=20 Identities=30% Similarity=0.538 Sum_probs=13.6
Q ss_pred CCCChhhHHHHHhhhcc--ccc
Q psy12216 623 SSDDDDDWEKYQTGLNK--RDK 642 (646)
Q Consensus 623 ~~~~~~d~~~~~~~~~~--~~~ 642 (646)
++++++|.+.|.+.|+| |||
T Consensus 141 ~~ddeDd~~~Ll~ELekIKkER 162 (244)
T PF04889_consen 141 DDDDEDDTAALLRELEKIKKER 162 (244)
T ss_pred ccccchHHHHHHHHHHHHHHHH
Confidence 34566777888888775 444
No 100
>KOG1832|consensus
Probab=22.81 E-value=48 Score=40.20 Aligned_cols=19 Identities=26% Similarity=0.324 Sum_probs=9.9
Q ss_pred HHhcCCCceEEE-EEEEEcc
Q psy12216 422 KVLGNMPYVDLH-VQPEVID 440 (646)
Q Consensus 422 ~v~~~~P~i~l~-v~~~v~~ 440 (646)
+.|...|.++=. |.|.-.|
T Consensus 1294 ~lLh~VP~Ldqc~VtFNstG 1313 (1516)
T KOG1832|consen 1294 KLLHSVPSLDQCAVTFNSTG 1313 (1516)
T ss_pred HHHhcCccccceEEEeccCc
Confidence 445666665542 5554444
No 101
>KOG0718|consensus
Probab=22.27 E-value=54 Score=37.02 Aligned_cols=22 Identities=32% Similarity=0.848 Sum_probs=20.6
Q ss_pred hhhhHhhhccCHHHHHhHHHhC
Q psy12216 2 KLTKAYQALTDEESRRNFEKYG 23 (646)
Q Consensus 2 ~ItKAYkaLTDe~~R~N~ekYG 23 (646)
.|-.||+-|.||..|.-|.-||
T Consensus 57 ~i~~AyEVLsDp~kRaIYD~~G 78 (546)
T KOG0718|consen 57 RIQRAYEVLSDPQKRAIYDNYG 78 (546)
T ss_pred HHHHHHHHhcChHHHHHHHHhh
Confidence 4778999999999999999999
No 102
>KOG2321|consensus
Probab=21.74 E-value=48 Score=38.26 Aligned_cols=27 Identities=22% Similarity=0.526 Sum_probs=16.5
Q ss_pred ccccccCccCCCCCChhhHHHHHhhhc
Q psy12216 612 KNEDSNNKSEESSDDDDDWEKYQTGLN 638 (646)
Q Consensus 612 ~~~~~~~~~~~~~~~~~d~~~~~~~~~ 638 (646)
+.++++++.+..|++++..+.|-..|.
T Consensus 549 dee~~d~~~~~~S~~ee~~~~~~~k~~ 575 (703)
T KOG2321|consen 549 DEEASDDDADEASSDEETRKLYERKME 575 (703)
T ss_pred cccccccccccccchhhhhHHHHHHHH
Confidence 334455556667777777776655554
No 103
>PRK01172 ski2-like helicase; Provisional
Probab=21.66 E-value=39 Score=40.06 Aligned_cols=57 Identities=11% Similarity=0.073 Sum_probs=46.5
Q ss_pred ceecCCCCCcCccceEEEeecccccccHHHHHhcChHHHhhhhccCChHhHHHHHHHhcC
Q psy12216 367 GTITPVLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGN 426 (646)
Q Consensus 367 ~~~~~qlPh~~ee~~~~i~~~k~~i~~~~~l~~l~~eeRr~lL~~l~~~~~~dv~~v~~~ 426 (646)
-.++.|+||++....+.+ .+..++|+.+++.+.+++|..++ ++++.+.+.|..-+++
T Consensus 611 ~~~L~~ip~~~~~~a~~l--~~~g~~~~~di~~~~~~~~~~i~-~~~~~~~~~i~~~~~~ 667 (674)
T PRK01172 611 LIDLVLIPKVGRVRARRL--YDAGFKTVDDIARSSPERIKKIY-GFSDTLANAIVNRAMK 667 (674)
T ss_pred HHhhcCCCCCCHHHHHHH--HHcCCCCHHHHHhCCHHHHHHHh-ccCHHHHHHHHHHHHH
Confidence 478889999999988777 34569999999999999998764 6888888877765544
No 104
>cd03586 PolY_Pol_IV_kappa DNA Polymerase IV/Kappa. Pol IV, also known as Pol kappa, DinB, and Dpo4, is a translesion synthesis (TLS) polymerase. Translesion synthesis is a process that allows the bypass of a variety of DNA lesions. TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. Known primarily as Pol IV in prokaryotes and Pol kappa in eukaryotes, this polymerase has a propensity for generating frameshift mutations. The eukaryotic Pol kappa differs from Pol IV and Dpo4 by an N-terminal extension of ~75 residues known as the "N-clasp" region. The structure of Pol kappa shows DNA that is almost totally encircled by Pol kappa, with the N-clasp region augmenting the interactions between DNA and the polymerase. Pol kappa is more resistant than Pol eta and Pol iota to bulky guanine adducts and is efficient at catalyzing the incorporation of dCTP. Bacterial pol IV has a
Probab=21.37 E-value=1.9e+02 Score=30.85 Aligned_cols=63 Identities=13% Similarity=0.155 Sum_probs=45.7
Q ss_pred HHHhccCCCCCCcccCCCCCHHHHHHHhhhccCCCCHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHccCC
Q psy12216 229 MIVQGMWDFKNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMP 299 (646)
Q Consensus 229 mIvQa~W~~~spLlQLPh~~~e~l~~le~~k~~i~tl~~L~~l~~~er~~LL~~ls~~q~~ev~~vl~~~P 299 (646)
.+.+.+|+ -|+..||++......+| .+.++.++.||..++.......++ ..+..+...+.-.-
T Consensus 163 ~~~~~L~~--lpl~~l~gig~~~~~~L--~~~Gi~ti~dl~~~~~~~L~~~~g----~~~~~l~~~~~G~~ 225 (334)
T cd03586 163 DVEEFLAP--LPVRKIPGVGKVTAEKL--KELGIKTIGDLAKLDVELLKKLFG----KSGRRLYELARGID 225 (334)
T ss_pred HHHHHHhc--CCchhhCCcCHHHHHHH--HHcCCcCHHHHHcCCHHHHHHHHh----HHHHHHHHHhCCCC
Confidence 34444443 69999999999999999 557899999999999887766443 34555555555443
No 105
>PF12353 eIF3g: Eukaryotic translation initiation factor 3 subunit G ; InterPro: IPR024675 At least eleven different protein factors are involved in initiation of protein synthesis in eukaryotes. Binding of initiator tRNA and mRNA to the 40S subunit requires the presence of the translation initiation factors eIF-2 and eIF-3, with eIF-3 being particularly important for 80S ribosome dissociation and mRNA binding []. eIF-3 is the most complex translation inititation factor, consisting of about 13 putative subunits and having a molecular weight of between 550 - 700 kDa in mammalian cells. Subunits are designated eIF-3a - eIF-3m; the large number of subunits means that the interactions between the individual subunits that make up the eIF-3 complex are complex and varied. Subunit G is required for eIF3 integrity. This entry represents a domain of approximately 130 amino acids in length found at the N terminus of eukaryotic translation initiation factor 3 subunit G. This domain is commonly found in association with the RNA recognition domain PF00076 from PFAM.
Probab=21.32 E-value=43 Score=31.33 Aligned_cols=21 Identities=29% Similarity=0.835 Sum_probs=14.7
Q ss_pred HHHhHHHhC----CCCCCCccceee
Q psy12216 15 SRRNFEKYG----NPDGPGAMSFGI 35 (646)
Q Consensus 15 ~R~N~ekYG----nPDGpq~~s~GI 35 (646)
.|++|.||| .|.||...+.-+
T Consensus 49 eRk~W~KFG~~~~~~pGp~~~Tt~~ 73 (128)
T PF12353_consen 49 ERKKWKKFGDEKNDPPGPDSSTTQV 73 (128)
T ss_pred HhhCccccCccccCCCCCCcccccc
Confidence 599999998 466676554433
No 106
>PF12322 T4_baseplate: T4 bacteriophage base plate protein; InterPro: IPR024364 Proteins in this family are found in T4-like viruses. They have a single completely conserved residue S that may be functionally important. The family includes the two base plate proteins from bacteriophage T4: Gp51 and Gp26, encoded by late genes []. Gp26 is a structural component of central hub of the baseplate. It associates with Gp25 (tail lysozyme) in the assembly process. Gp51 is essential for the formation of the central hub of the phage baseplate, playing a catalytic role for the central hub formation. It may be also a structural component of the hub.
Probab=21.14 E-value=6.6e+02 Score=25.40 Aligned_cols=67 Identities=12% Similarity=0.236 Sum_probs=47.8
Q ss_pred CCceecCCCCCcCc-cc--------eEEEeecccccccHHHHHhcChHHHhhhhccCChHhHHHHHHHhcCCCceEEE--
Q psy12216 365 PNGTITPVLPYVTD-DH--------LKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMPYVDLH-- 433 (646)
Q Consensus 365 ~~~~~~~qlPh~~e-e~--------~~~i~~~k~~i~~~~~l~~l~~eeRr~lL~~l~~~~~~dv~~v~~~~P~i~l~-- 433 (646)
++...-.++|.+.+ +. ...|.-+ ..+. ...+++++++..++..++.++++.|.+.+.. |.|.+.
T Consensus 110 ~~i~i~~ryP~~~~~~~~~~mi~~cI~~I~~~-~~~~---~~~dl~e~e~~~~~d~i~~~~~e~I~~~~~~-Pki~~~v~ 184 (205)
T PF12322_consen 110 DGIKIKMRYPSLFEFDDVFEMIASCIDYIYDG-EQVY---NWEDLSEEEKDEFFDSIDSDDFEKIQKFFET-PKIYHAVP 184 (205)
T ss_pred CCEEEEEeCCcccccCCHHHHHHHHHHeEEEC-CEEE---ECCCCCHHHHHHHHHHcCHHHHHHHHHHhcC-CeEEEEEE
Confidence 45677888997764 22 2222112 2222 3568888999998888999999999999999 998885
Q ss_pred EEE
Q psy12216 434 VQP 436 (646)
Q Consensus 434 v~~ 436 (646)
++|
T Consensus 185 vkC 187 (205)
T PF12322_consen 185 VKC 187 (205)
T ss_pred Eee
Confidence 555
No 107
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=20.78 E-value=1.5e+02 Score=32.27 Aligned_cols=55 Identities=15% Similarity=0.251 Sum_probs=43.9
Q ss_pred CcccC--CCCCHHHHHHHhhhccCCCCHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHcc
Q psy12216 240 PLLQL--PYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGN 297 (646)
Q Consensus 240 pLlQL--Ph~~~e~l~~le~~k~~i~tl~~L~~l~~~er~~LL~~ls~~q~~ev~~vl~~ 297 (646)
+|-.| +++++..+++| ++.++.|+.+++..++.++..+. +++......+...++.
T Consensus 27 ~~~~l~~~gi~~~~i~kL--~~~g~~T~~~~~~~~~~~L~~i~-~is~~~~~~~~~~~~~ 83 (342)
T PLN03186 27 PIEQLQASGIAALDIKKL--KDAGIHTVESLAYAPKKDLLQIK-GISEAKVEKILEAASK 83 (342)
T ss_pred cHHHHHhCCCCHHHHHHH--HHcCCCcHHHHHhCCHHHHHHhc-CCCHHHHHHHHHHHHH
Confidence 34444 67999999999 55789999999999999888765 5888888777777755
No 108
>PRK03858 DNA polymerase IV; Validated
Probab=20.07 E-value=1.7e+02 Score=32.16 Aligned_cols=55 Identities=13% Similarity=0.078 Sum_probs=42.7
Q ss_pred CCCcccCCCCCHHHHHHHhhhccCCCCHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHcc
Q psy12216 238 KNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGN 297 (646)
Q Consensus 238 ~spLlQLPh~~~e~l~~le~~k~~i~tl~~L~~l~~~er~~LL~~ls~~q~~ev~~vl~~ 297 (646)
..|+..||+++....++| .+.++.|+.+|..++.......++ ...+..+...+.-
T Consensus 172 ~lpl~~l~Gig~~~~~~L--~~~Gi~t~~dl~~l~~~~L~~~fG---~~~~~~l~~~a~G 226 (396)
T PRK03858 172 PLPVRRLWGVGPVTAAKL--RAHGITTVGDVAELPESALVSLLG---PAAGRHLHALAHN 226 (396)
T ss_pred cCChhhcCCCCHHHHHHH--HHhCCCcHHHHhcCCHHHHHHHhC---cHHHHHHHHHhCC
Confidence 469999999999999999 557899999999999887776553 3445556655543
Done!