Query psy12216
Match_columns 646
No_of_seqs 339 out of 929
Neff 6.4
Searched_HMMs 29240
Date Fri Aug 16 21:47:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12216.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12216hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3im1_A Protein SNU246, PRE-mRN 100.0 2.5E-45 8.4E-50 389.9 29.2 265 59-388 7-271 (328)
2 2q0z_X Protein Pro2281; SEC63, 100.0 1.9E-44 6.5E-49 384.8 29.5 264 59-388 11-274 (339)
3 4f92_B U5 small nuclear ribonu 100.0 9.1E-32 3.1E-36 336.1 28.8 263 60-388 1408-1670(1724)
4 4f92_B U5 small nuclear ribonu 100.0 2E-27 6.7E-32 297.1 27.2 258 53-358 570-830 (1724)
5 2zj8_A DNA helicase, putative 99.8 1.6E-18 5.4E-23 201.4 14.8 207 61-300 477-704 (720)
6 2p6r_A Afuhel308 helicase; pro 99.8 6.9E-19 2.4E-23 203.8 11.6 209 61-306 474-692 (702)
7 2va8_A SSO2462, SKI2-type heli 99.7 1.1E-16 3.9E-21 185.4 14.9 209 61-301 493-714 (715)
8 3im1_A Protein SNU246, PRE-mRN 98.5 5.6E-08 1.9E-12 102.7 6.2 89 367-482 156-244 (328)
9 2q0z_X Protein Pro2281; SEC63, 98.5 8.7E-08 3E-12 101.8 7.3 87 368-481 161-247 (339)
10 2ctp_A DNAJ homolog subfamily 92.4 0.08 2.7E-06 43.4 3.2 26 2-27 51-76 (78)
11 2och_A Hypothetical protein DN 91.7 0.081 2.8E-06 42.8 2.4 23 2-24 50-72 (73)
12 2dn9_A DNAJ homolog subfamily 90.8 0.13 4.4E-06 42.2 2.8 24 2-25 52-75 (79)
13 1wcn_A Transcription elongatio 90.5 0.29 9.8E-06 39.7 4.5 56 239-297 7-62 (70)
14 1hdj_A Human HSP40, HDJ-1; mol 90.1 0.14 4.8E-06 41.8 2.4 24 2-25 47-70 (77)
15 2lgw_A DNAJ homolog subfamily 90.0 0.087 3E-06 45.6 1.2 23 2-24 48-70 (99)
16 2qsa_A DNAJ homolog DNJ-2; J-d 89.7 0.13 4.6E-06 45.0 2.1 23 2-24 64-86 (109)
17 2ej7_A HCG3 gene; HCG3 protein 89.4 0.12 4.2E-06 42.7 1.5 23 2-24 55-77 (82)
18 2o37_A Protein SIS1; HSP40, J- 89.3 0.17 5.8E-06 42.9 2.4 23 2-24 50-72 (92)
19 2dmx_A DNAJ homolog subfamily 89.1 0.17 5.9E-06 42.8 2.3 24 2-25 55-78 (92)
20 1bq0_A DNAJ, HSP40; chaperone, 87.5 0.17 5.8E-06 43.9 1.2 27 2-28 48-74 (103)
21 2ctw_A DNAJ homolog subfamily 86.8 0.29 9.9E-06 42.9 2.4 23 2-24 62-84 (109)
22 2ctr_A DNAJ homolog subfamily 86.0 0.19 6.6E-06 42.2 0.8 23 2-24 51-73 (88)
23 3uo3_A J-type CO-chaperone JAC 84.8 0.21 7.1E-06 48.0 0.5 42 2-43 60-106 (181)
24 3apq_A DNAJ homolog subfamily 84.2 0.44 1.5E-05 45.7 2.5 24 2-25 47-70 (210)
25 2kz3_A Putative uncharacterize 84.0 2.2 7.6E-05 35.6 6.4 50 244-296 9-58 (83)
26 2ctq_A DNAJ homolog subfamily 83.3 0.4 1.4E-05 42.2 1.6 23 2-24 65-87 (112)
27 1fpo_A HSC20, chaperone protei 82.8 0.59 2E-05 44.4 2.7 23 2-24 53-75 (171)
28 1gh6_A Large T antigen; tumor 81.6 0.25 8.4E-06 44.0 -0.4 22 2-23 51-72 (114)
29 2pf4_E Small T antigen; PP2A, 81.2 0.36 1.2E-05 46.1 0.5 23 2-24 54-76 (174)
30 2l6l_A DNAJ homolog subfamily 79.0 0.19 6.5E-06 46.8 -2.2 26 2-27 61-86 (155)
31 2yua_A Williams-beuren syndrom 78.2 1 3.5E-05 38.6 2.4 23 2-24 62-84 (99)
32 2zj8_A DNA helicase, putative 78.0 0.84 2.9E-05 52.5 2.3 60 367-429 645-704 (720)
33 3lz8_A Putative chaperone DNAJ 76.5 0.52 1.8E-05 49.5 0.0 26 2-27 72-97 (329)
34 3hho_A CO-chaperone protein HS 73.9 1.3 4.5E-05 42.1 2.1 23 2-24 56-78 (174)
35 2p6r_A Afuhel308 helicase; pro 70.1 0.74 2.5E-05 52.7 -0.7 61 367-434 631-691 (702)
36 1z00_B DNA repair endonuclease 66.8 5.2 0.00018 33.4 4.0 53 239-297 18-71 (84)
37 2a1j_A DNA repair endonuclease 66.6 5.8 0.0002 31.1 4.0 54 238-297 3-57 (63)
38 1z3e_B DNA-directed RNA polyme 64.9 12 0.00042 30.3 5.8 57 239-299 9-65 (73)
39 3bvo_A CO-chaperone protein HS 63.2 3 0.0001 40.7 2.2 20 2-21 95-114 (207)
40 1faf_A Large T antigen; J doma 61.3 2.2 7.5E-05 35.0 0.7 23 2-25 54-76 (79)
41 3k4g_A DNA-directed RNA polyme 57.5 18 0.00061 30.4 5.6 57 239-299 12-68 (86)
42 2i1q_A DNA repair and recombin 57.4 10 0.00035 38.7 5.1 56 239-297 3-58 (322)
43 3apo_A DNAJ homolog subfamily 54.9 3.4 0.00012 47.7 1.1 23 2-24 66-88 (780)
44 3gfk_B DNA-directed RNA polyme 50.4 15 0.0005 30.4 3.9 56 239-298 16-71 (79)
45 1pzn_A RAD51, DNA repair and r 47.7 31 0.0011 35.9 7.0 56 239-297 35-90 (349)
46 1coo_A RNA polymerase alpha su 38.0 29 0.00098 29.8 3.9 55 240-298 25-79 (98)
47 1t06_A Hypothetical protein; s 37.5 19 0.00065 35.4 3.2 35 2-40 5-39 (235)
48 1kft_A UVRC, excinuclease ABC 31.8 36 0.0012 27.2 3.5 55 238-296 23-77 (78)
49 1z00_A DNA excision repair pro 30.4 75 0.0026 25.9 5.3 54 240-297 20-73 (89)
50 1u9l_A Transcription elongatio 30.2 26 0.00089 28.1 2.3 54 241-297 8-61 (70)
51 3mab_A Uncharacterized protein 29.5 44 0.0015 28.3 3.7 37 238-276 3-39 (93)
52 2z43_A DNA repair and recombin 27.9 13 0.00043 38.2 0.0 56 239-297 12-67 (324)
53 3arc_U Photosystem II 12 kDa e 27.4 44 0.0015 28.5 3.4 51 238-298 25-75 (97)
54 1jei_A Emerin; membrane protei 25.8 23 0.00078 27.0 1.1 22 7-28 3-24 (53)
55 1x2i_A HEF helicase/nuclease; 25.4 82 0.0028 24.4 4.5 54 240-297 15-68 (75)
56 2a1j_B DNA excision repair pro 24.4 84 0.0029 25.8 4.6 52 241-296 34-85 (91)
57 4dez_A POL IV 1, DNA polymeras 23.4 1.3E+02 0.0044 31.1 6.8 61 238-303 177-237 (356)
58 3bqs_A Uncharacterized protein 22.2 58 0.002 27.5 3.1 36 238-275 3-38 (93)
59 1b22_A DNA repair protein RAD5 21.4 21 0.00072 31.4 0.2 58 239-299 23-82 (114)
No 1
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=100.00 E-value=2.5e-45 Score=389.94 Aligned_cols=265 Identities=20% Similarity=0.295 Sum_probs=235.3
Q ss_pred cccccchhhhhhhcccccccCcchHHHHHHHHHhhccCCCCCHHHHHHHHhcccccccccCCCCccCCchhhHHHHHHHh
Q psy12216 59 MVALPTAVGMWWYKSIRYTGDKVLLETINFYYAFFQITPHMALKRVLMILGASLEFDRRFNSEIIERPSDEIEVPQLIRQ 138 (646)
Q Consensus 59 gvvLP~~Vg~ww~~s~kyt~~gV~~eT~~~F~~~~~l~~~~s~~~lL~iLS~A~EF~~~~~~~i~vR~~E~~eL~~L~~~ 138 (646)
+.+-|+-+|+.. +..||.+.||++|+ .+++++++..++|++||.|.||. ++++|++|+.+|.+|.+.
T Consensus 7 ~~l~~t~lG~ia------S~yYi~~~T~~~f~--~~l~~~~~~~~lL~ils~a~Ef~-----~i~vR~~E~~~l~~L~~~ 73 (328)
T 3im1_A 7 EIISTLSNGLIA------SHYGVSFFTIQSFV--SSLSNTSTLKNMLYVLSTAVEFE-----SVPLRKGDRALLVKLSKR 73 (328)
T ss_dssp CCCTTSSSCBCC------CCCCCCHHHHHHHH--HHCCTTCCHHHHHHHHHTCGGGG-----GSCCCTTHHHHHHHHHTT
T ss_pred CCccCCchhHHH------HHHCCCHHHHHHHH--HHhcccCCHHHHHHHhccHHHHH-----hcccCcchHHHHHHHHHh
Confidence 456799999986 34578888999997 56899999999999999999999 999999999999999999
Q ss_pred CCCCCcCCCCCCCCcchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhccCcccchHH
Q psy12216 139 IPNLGEKNRERPLYHKYSIKARALIYAHLSNMQLTSETLEADRMYIVKKCPYLLQEMVTCISQLILLAYAQRVPRLIHIE 218 (646)
Q Consensus 139 lp~~~~k~k~~~~~~~~~~Ka~lLLqAhLsRi~Lp~~~L~~D~~~VL~~a~RLl~AmidIa~~~g~la~~~~w~~~p~L~ 218 (646)
+|..... ....++++.|+++||||||+|+++|+ +|.+|+.+|+++|+||++||++||+..|| +.
T Consensus 74 ~~~~~~~---~~~~~~~~~K~~lLLqa~isr~~l~~-~l~~D~~~V~~~a~rLl~al~di~~~~g~------------~~ 137 (328)
T 3im1_A 74 LPLRFPE---HTSSGSVSFKVFLLLQAYFSRLELPV-DFQNDLKDILEKVVPLINVVVDILSANGY------------LN 137 (328)
T ss_dssp SSSCCCT---TSCSSSHHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTB------------TT
T ss_pred CCCcccc---cCCCCCHHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHcCCc------------HH
Confidence 8874211 12345799999999999999999997 89999999999999999999999987654 67
Q ss_pred HHHHHHHHHHHHHhccCCCCCCcccCCCCCHHHHHHHhhhccCCCCHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHccC
Q psy12216 219 TLENVMKLCPMIVQGMWDFKNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNM 298 (646)
Q Consensus 219 ~~l~~l~L~QmIvQa~W~~~spLlQLPh~~~e~l~~le~~k~~i~tl~~L~~l~~~er~~LL~~ls~~q~~ev~~vl~~~ 298 (646)
++++|+|+|||+||+|+.++||+|||||+.+.++++. ++++.++++|+++++++++.++ ++++.+++++.++|++|
T Consensus 138 -~~~~l~L~q~i~q~~w~~~~pL~Qlp~i~~~~~~~l~--~~~i~s~~~l~~~~~~e~~~ll-~~~~~~~~~v~~~~~~~ 213 (328)
T 3im1_A 138 -ATTAMDLAQMLIQGVWDVDNPLRQIPHFNNKILEKCK--EINVETVYDIMALEDEERDEIL-TLTDSQLAQVAAFVNNY 213 (328)
T ss_dssp -HHHHHHHHHHHHHTSCTTSCGGGGSTTCCHHHHHHHH--HTTCCSHHHHHHSCHHHHHHHC-CCCHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHHHhhcCCCCCceeCCCCCCHHHHHHHH--hCCCCCHHHHhcCCHHHHHhHh-CCCHHHHHHHHHHHHhC
Confidence 8999999999999999999999999999999999994 4679999999999999999988 58999999999999999
Q ss_pred CceeEEeeeeecCCCCCcccCCCCeEEEEEEEEEecCCCccCCccccccccccccCCCccccccCCCCceecCCCCCcCc
Q psy12216 299 PYVDLHVQPEVIDDEATTEYTAGAIITVTCTLMRKPMSVLFGDDTIKVQFLEPSKEGEGEIEEEEKPNGTITPVLPYVTD 378 (646)
Q Consensus 299 P~L~I~a~~~V~gEed~~~It~g~ivtL~VkL~R~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~qlPh~~e 378 (646)
|.|+|++ +|.|+ ..|++|+.++|+|+|+|.+.. ..+.+|+|+|||.+.
T Consensus 214 P~l~v~~--~v~~~---~~i~~~~~~~l~v~l~~~~~~---------------------------~~~~~~ap~fp~~k~ 261 (328)
T 3im1_A 214 PNVELTY--SLNNS---DSLISGVKQKITIQLTRDVEP---------------------------ENLQVTSEKYPFDKL 261 (328)
T ss_dssp CCEEEEE--EETTG---GGCCTTSEEEEEEEEEESSCC---------------------------SCCBCCCSSCCBCCB
T ss_pred CCEEEEE--EecCC---CcccCCCeEEEEEEEEECCCC---------------------------CCCcEECCCCCCCcc
Confidence 9999984 68775 579999999999999995421 235799999999999
Q ss_pred cceEEEeecc
Q psy12216 379 DHLKHFICKK 388 (646)
Q Consensus 379 e~~~~i~~~k 388 (646)
++||.++++.
T Consensus 262 e~ww~~v~d~ 271 (328)
T 3im1_A 262 ESWWLVLGEV 271 (328)
T ss_dssp CCEEEEEEEG
T ss_pred CCEEEEEEEC
Confidence 9999999864
No 2
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=100.00 E-value=1.9e-44 Score=384.75 Aligned_cols=264 Identities=25% Similarity=0.397 Sum_probs=209.7
Q ss_pred cccccchhhhhhhcccccccCcchHHHHHHHHHhhccCCCCCHHHHHHHHhcccccccccCCCCccCCchhhHHHHHHHh
Q psy12216 59 MVALPTAVGMWWYKSIRYTGDKVLLETINFYYAFFQITPHMALKRVLMILGASLEFDRRFNSEIIERPSDEIEVPQLIRQ 138 (646)
Q Consensus 59 gvvLP~~Vg~ww~~s~kyt~~gV~~eT~~~F~~~~~l~~~~s~~~lL~iLS~A~EF~~~~~~~i~vR~~E~~eL~~L~~~ 138 (646)
|-+-|+.+|+.. +..||.++|+++|+ ..++++++..++|++||.|.||. ++++|++|+.+|.+|.+.
T Consensus 11 g~l~~t~lGria------S~yYi~~~T~~~f~--~~l~~~~~~~~lL~ils~a~EF~-----~i~vR~~E~~~l~~L~~~ 77 (339)
T 2q0z_X 11 MDVAPLNLGMIA------AYYYINYTTIELFS--MSLNAKTKVRGLIEIISNAAEYE-----NIPIRHHEDNLLRQLAQK 77 (339)
T ss_dssp ----------------------------------------CCHHHHHHHHHTSGGGT-----TCCCCTTCHHHHHHHHHH
T ss_pred ceeccCcHHHHH------HHHCCCHHHHHHHH--HHhcccCCHHHHHHHHhchHHHh-----cCCCCcchHHHHHHHHHh
Confidence 567799999997 23456666999997 66899999999999999999999 999999999999999999
Q ss_pred CCCCCcCCCCCCCCcchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhccCcccchHH
Q psy12216 139 IPNLGEKNRERPLYHKYSIKARALIYAHLSNMQLTSETLEADRMYIVKKCPYLLQEMVTCISQLILLAYAQRVPRLIHIE 218 (646)
Q Consensus 139 lp~~~~k~k~~~~~~~~~~Ka~lLLqAhLsRi~Lp~~~L~~D~~~VL~~a~RLl~AmidIa~~~g~la~~~~w~~~p~L~ 218 (646)
+|+... ....+.|+.|+++||||||+|+++| .+|.+|+.+|+++|+||++||++||+.+|| +.
T Consensus 78 ~~~~~~----~~~~~~~~~K~~lLLqa~isr~~l~-~~l~~D~~~V~~~a~RLl~al~di~~~~g~------------~~ 140 (339)
T 2q0z_X 78 VPHKLN----NPKFNDPHVKTNLLLQAHLSRMQLS-AELQSDTEEILSKAIRLIQACVDVLSSNGW------------LS 140 (339)
T ss_dssp SSSCCS----SCCTTCHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTB------------HH
T ss_pred CCCccc----cCCCCCHHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHcCC------------HH
Confidence 887531 1234689999999999999999998 599999999999999999999999987655 77
Q ss_pred HHHHHHHHHHHHHhccCCCCCCcccCCCCCHHHHHHHhhhccCCCCHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHccC
Q psy12216 219 TLENVMKLCPMIVQGMWDFKNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNM 298 (646)
Q Consensus 219 ~~l~~l~L~QmIvQa~W~~~spLlQLPh~~~e~l~~le~~k~~i~tl~~L~~l~~~er~~LL~~ls~~q~~ev~~vl~~~ 298 (646)
+++++|+|+|||+||+|++++||+|||||+.+.++++. +.++.++++|+++++++++.+|+ +++.+++++.++|++|
T Consensus 141 ~~~~~l~L~q~i~q~~w~~~~pL~Qlp~i~~~~~~~l~--~~~i~s~~~l~~~~~~e~~~ll~-l~~~~~~~i~~~~~~~ 217 (339)
T 2q0z_X 141 PALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCT--DKGVESVFDIMEMEDEERNALLQ-LTDSQIADVARFCNRY 217 (339)
T ss_dssp HHHHHHHHHHHHHHTCCTTSCGGGGSTTCCHHHHHHHH--HTTCCSHHHHHHSCHHHHHHHHC-CCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhcCCCCCceecCCCCCHHHHHHHH--hcCCCCHHHHHhCCHHHHHHHHC-CCHHHHHHHHHHHHhC
Confidence 89999999999999999999999999999999999994 45789999999999999999996 8999999999999999
Q ss_pred CceeEEeeeeecCCCCCcccCCCCeEEEEEEEEEecCCCccCCccccccccccccCCCccccccCCCCceecCCCCCcCc
Q psy12216 299 PYVDLHVQPEVIDDEATTEYTAGAIITVTCTLMRKPMSVLFGDDTIKVQFLEPSKEGEGEIEEEEKPNGTITPVLPYVTD 378 (646)
Q Consensus 299 P~L~I~a~~~V~gEed~~~It~g~ivtL~VkL~R~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~qlPh~~e 378 (646)
|.|+|++ +|.++ ..|++|+.++|+|+|+|.+- ..+.+|+|.||+.+.
T Consensus 218 P~l~v~~--~v~~~---~~i~~~~~~~l~v~l~~~~~----------------------------~~~~v~aP~fp~~k~ 264 (339)
T 2q0z_X 218 PNIELSY--EVVDK---DSIRSGGPVVVLVQLEREEE----------------------------VTGPVIAPLFPQKRE 264 (339)
T ss_dssp CCEEEEE--EETTG---GGCBTTSEEEEEEEEEECSS----------------------------CCSSCCCTTCSSCCC
T ss_pred CcEEEEE--EEccC---ccccCCCcEEEEEEEEECCC----------------------------CCCceeCCCCCCCCC
Confidence 9999974 58775 57999999999999999631 124799999999999
Q ss_pred cceEEEeecc
Q psy12216 379 DHLKHFICKK 388 (646)
Q Consensus 379 e~~~~i~~~k 388 (646)
+.||.++++.
T Consensus 265 e~wwi~v~d~ 274 (339)
T 2q0z_X 265 EGWWVVIGDA 274 (339)
T ss_dssp CCEEEEEEET
T ss_pred CcEEEEEEEC
Confidence 9999999864
No 3
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=9.1e-32 Score=336.07 Aligned_cols=263 Identities=24% Similarity=0.393 Sum_probs=233.2
Q ss_pred ccccchhhhhhhcccccccCcchHHHHHHHHHhhccCCCCCHHHHHHHHhcccccccccCCCCccCCchhhHHHHHHHhC
Q psy12216 60 VALPTAVGMWWYKSIRYTGDKVLLETINFYYAFFQITPHMALKRVLMILGASLEFDRRFNSEIIERPSDEIEVPQLIRQI 139 (646)
Q Consensus 60 vvLP~~Vg~ww~~s~kyt~~gV~~eT~~~F~~~~~l~~~~s~~~lL~iLS~A~EF~~~~~~~i~vR~~E~~eL~~L~~~l 139 (646)
-+-|+-+|+.. +..+|.+.|+.+|. .++++.+++.++|++||.|.||. ++++|++|+..+.+|.+.+
T Consensus 1408 ~l~~T~lG~i~------s~~yi~~~t~~~~~--~~l~~~~~~~~~L~il~~a~ef~-----~i~~R~~E~~~l~~l~~~~ 1474 (1724)
T 4f92_B 1408 DVAPLNLGMIA------AYYYINYTTIELFS--MSLNAKTKVRGLIEIISNAAEYE-----NIPIRHHEDNLLRQLAQKV 1474 (1724)
T ss_dssp EEEECHHHHHH------HHTTCCHHHHHHHH--HHCCTTCCHHHHHHHHHTSGGGT-----TCCCCTTHHHHHHHHHHHS
T ss_pred CEeecHHHHHH------HHHCCCHHHHHHHH--HhccccCCHHHHHHHhcCCcccc-----cccccccHHHHHHHHHhhC
Confidence 35688889886 24467777999997 67899999999999999999999 9999999999999999999
Q ss_pred CCCCcCCCCCCCCcchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhccCcccchHHH
Q psy12216 140 PNLGEKNRERPLYHKYSIKARALIYAHLSNMQLTSETLEADRMYIVKKCPYLLQEMVTCISQLILLAYAQRVPRLIHIET 219 (646)
Q Consensus 140 p~~~~k~k~~~~~~~~~~Ka~lLLqAhLsRi~Lp~~~L~~D~~~VL~~a~RLl~AmidIa~~~g~la~~~~w~~~p~L~~ 219 (646)
|.... ......++.|+++||||||+|+++| .+|..|+..|++++.||++||+|+|...|| +.+
T Consensus 1475 ~~~~~----~~~~~~~~~K~~lLlqa~~~r~~l~-~~~~~D~~~i~~~~~rl~~a~~d~~~~~g~------------~~~ 1537 (1724)
T 4f92_B 1475 PHKLN----NPKFNDPHVKTNLLLQAHLSRMQLS-AELQSDTEEILSKAIRLIQACVDVLSSNGW------------LSP 1537 (1724)
T ss_dssp SSCCS----SCCTTCHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTB------------HHH
T ss_pred CCCCC----ccccCCHHHHHHHHHHHHHCCCcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------------HHH
Confidence 87442 2345689999999999999999997 589999999999999999999999988765 678
Q ss_pred HHHHHHHHHHHHhccCCCCCCcccCCCCCHHHHHHHhhhccCCCCHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHccCC
Q psy12216 220 LENVMKLCPMIVQGMWDFKNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMP 299 (646)
Q Consensus 220 ~l~~l~L~QmIvQa~W~~~spLlQLPh~~~e~l~~le~~k~~i~tl~~L~~l~~~er~~LL~~ls~~q~~ev~~vl~~~P 299 (646)
++++|+|+|||.||+|.+.+||+|||||+...+++| ...++.|+.+|++++++++..+|+ +++.++.+|.++|++||
T Consensus 1538 ~~~~~~l~q~l~~~~w~~~~~L~qip~i~~~~ar~l--~~~gi~t~~dl~~~~~~~~~~ll~-~~~~~~~~i~~~~~~~P 1614 (1724)
T 4f92_B 1538 ALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRC--TDKGVESVFDIMEMEDEERNALLQ-LTDSQIADVARFCNRYP 1614 (1724)
T ss_dssp HHHHHHHHHHHHTTCCTTSCGGGGSTTCCHHHHHHH--HHHTCCSHHHHHSSCHHHHTTSSC-CCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhCCCcCCcCEecCCCCCHHHHHHH--HHCCCCCHHHHHhCCHHHHHHHHC-CChHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999 446899999999999999999885 89999999999999999
Q ss_pred ceeEEeeeeecCCCCCcccCCCCeEEEEEEEEEecCCCccCCccccccccccccCCCccccccCCCCceecCCCCCcCcc
Q psy12216 300 YVDLHVQPEVIDDEATTEYTAGAIITVTCTLMRKPMSVLFGDDTIKVQFLEPSKEGEGEIEEEEKPNGTITPVLPYVTDD 379 (646)
Q Consensus 300 ~L~I~a~~~V~gEed~~~It~g~ivtL~VkL~R~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~qlPh~~ee 379 (646)
.++|++. +.+. ..+.+|..+++.|+++|.+.+ .+.+++|.||+.+.|
T Consensus 1615 ~i~~~~~--~~~~---~~~~~~~~~~~~v~~~~~~~~----------------------------~~~~~~~~~p~~k~e 1661 (1724)
T 4f92_B 1615 NIELSYE--VVDK---DSIRSGGPVVVLVQLEREEEV----------------------------TGPVIAPLFPQKREE 1661 (1724)
T ss_dssp CEEEEEE--EETS---SSCCTTSEEEEEEEEEESSCC----------------------------CSCCCCTTSCSCCCC
T ss_pred ceEEEEE--EecC---ccccCCCeEEEEEEEEecCCC----------------------------CCeeecCCCCCCCcc
Confidence 9999864 5443 468899999999999996533 246899999999999
Q ss_pred ceEEEeecc
Q psy12216 380 HLKHFICKK 388 (646)
Q Consensus 380 ~~~~i~~~k 388 (646)
+||.|+|+.
T Consensus 1662 ~w~~vvg~~ 1670 (1724)
T 4f92_B 1662 GWWVVIGDA 1670 (1724)
T ss_dssp CEEEEEEET
T ss_pred CEEEEEEEC
Confidence 999999864
No 4
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.95 E-value=2e-27 Score=297.12 Aligned_cols=258 Identities=18% Similarity=0.268 Sum_probs=224.3
Q ss_pred eeehhhcccccchhhhhhhcccccccCcchHHHHHHHHHhhccCCCCCHHHHHHHHhcccccccccCCCCccCCchhhHH
Q psy12216 53 LYALVFMVALPTAVGMWWYKSIRYTGDKVLLETINFYYAFFQITPHMALKRVLMILGASLEFDRRFNSEIIERPSDEIEV 132 (646)
Q Consensus 53 ~Y~llfgvvLP~~Vg~ww~~s~kyt~~gV~~eT~~~F~~~~~l~~~~s~~~lL~iLS~A~EF~~~~~~~i~vR~~E~~eL 132 (646)
-|.---|.+-|+-+||.. +..+|.++|+..|+ ..+++.++..+||.+||.|.||. ++++|++|..++
T Consensus 570 ~~d~~~~~~~~T~lGr~~------s~~yi~~~t~~~~~--~~l~~~~~~~~ll~~is~s~ef~-----~i~~R~~E~~~l 636 (1724)
T 4f92_B 570 KYDKKTGNFQVTELGRIA------SHYYITNDTVQTYN--QLLKPTLSEIELFRVFSLSSEFK-----NITVREEEKLEL 636 (1724)
T ss_dssp EECTTTCBEEECHHHHHH------HHTTCCHHHHHHHH--HHCCTTCCHHHHHHHHHTCGGGT-----TCCCCGGGHHHH
T ss_pred eeecCCCccccchHHHHH------HHhcCCHHHHHHHH--hhcCCCCCHHHHHHHHhCChhhc-----cCCcCHHHHHHH
Confidence 344455677899999986 35577888999997 55899999999999999999999 999999999999
Q ss_pred HHHHHhCCCCCcCCCCCCCCcchhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhccCc
Q psy12216 133 PQLIRQIPNLGEKNRERPLYHKYSIKARALIYAHLSNMQLTSETLEADRMYIVKKCPYLLQEMVTCISQLILLAYAQRVP 212 (646)
Q Consensus 133 ~~L~~~lp~~~~k~k~~~~~~~~~~Ka~lLLqAhLsRi~Lp~~~L~~D~~~VL~~a~RLl~AmidIa~~~g~la~~~~w~ 212 (646)
.+|.+.+|.... ...+.++.|+++||||||+|++++.++|.+|+.+|.+++.||++||++|+...||
T Consensus 637 ~~l~~~~~~~~~-----~~~~~~~~Kv~~Llq~~i~~~~~~~~~l~~D~~~i~~~a~ri~ra~~ei~~~~~~-------- 703 (1724)
T 4f92_B 637 QKLLERVPIPVK-----ESIEEPSAKINVLLQAFISQLKLEGFALMADMVYVTQLAGRLMRAIFEIVLNRGW-------- 703 (1724)
T ss_dssp HHHHHHSSSCCC-----SCCSSHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTB--------
T ss_pred HHHHhcCCCCcC-----CCCCChHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHcCC--------
Confidence 999999887542 2346789999999999999999999999999999999999999999999977654
Q ss_pred ccchHHHHHHHHHHHHHHHhccCCCCCCcccCCCCCHHHHHHHhhhccCCCCHHHHHcCCHHHHHHHHhcCCHHHHHHHH
Q psy12216 213 RLIHIETLENVMKLCPMIVQGMWDFKNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDML 292 (646)
Q Consensus 213 ~~p~L~~~l~~l~L~QmIvQa~W~~~spLlQLPh~~~e~l~~le~~k~~i~tl~~L~~l~~~er~~LL~~ls~~q~~ev~ 292 (646)
...+.+++.||+||.+++|++.+||+|||+++.+.++++++ .++ ++.+|.+|++.+++.+++ ++..+..+.
T Consensus 704 ----~~~~~~~l~l~k~i~~~~w~~~~~L~q~~~i~~~~~~~l~~--~~~-~~~~l~~~~~~~l~~~~~--~~~~g~~i~ 774 (1724)
T 4f92_B 704 ----AQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVVKKIEK--KNF-PFERLYDLNHNEIGELIR--MPKMGKTIH 774 (1724)
T ss_dssp ----HHHHHHHHHHHHHHHHTSCTTSCGGGGSTTSCHHHHHHHHT--SSC-CGGGGGGCCHHHHHHHHT--CSTTHHHHH
T ss_pred ----HHHHHHHHHHHHHHHhCCCCCCCceecCCCCCHHHHHHHHh--cCC-CHHHHHhCCHHHHHHHHC--CchHHHHHH
Confidence 66799999999999999999999999999999999999964 344 999999999999999996 577899999
Q ss_pred HHHccCCceeEEeeeeecCCCCCcccCCCCeEEEEEEEEEecCCCccCCcccccc---ccccccCCCcc
Q psy12216 293 KVLGNMPYVDLHVQPEVIDDEATTEYTAGAIITVTCTLMRKPMSVLFGDDTIKVQ---FLEPSKEGEGE 358 (646)
Q Consensus 293 ~vl~~~P~L~I~a~~~V~gEed~~~It~g~ivtL~VkL~R~~~~~~~~~~~~~~~---f~~~~~~~~~~ 358 (646)
+.+++||+++|++. | ++||.+ .+.+.+.++ |+|.|+.++||. ||+.|||++|+
T Consensus 775 ~~~~~~P~~~~~~~--~------~p~~~~-~~~~~~~~~----~~~~w~~~~h~~~~~~~~~v~d~~~~ 830 (1724)
T 4f92_B 775 KYVHLFPKLELSVH--L------QPITRS-TLKVELTIT----PDFQWDEKVHGSSEAFWILVEDVDSE 830 (1724)
T ss_dssp HHHTTSCCEEEEEE--E------EESSSS-EEEEEEEEE----ECSCCCTTTTTTEEEEEEEEECTTSC
T ss_pred HHHHHCCCceEEEE--E------EecCCc-eEEEEEEEe----eccccchhhcCCceeEEEEEEecCCC
Confidence 99999999999975 4 456665 444444443 589999999999 99999999985
No 5
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.77 E-value=1.6e-18 Score=201.36 Aligned_cols=207 Identities=13% Similarity=0.133 Sum_probs=163.0
Q ss_pred cccchhhhhhhcccccccCcchHHHHHHHHHhhccCC---CCCHHHHHHHHhcccccccccCCCCccCCchhhHHHHHHH
Q psy12216 61 ALPTAVGMWWYKSIRYTGDKVLLETINFYYAFFQITP---HMALKRVLMILGASLEFDRRFNSEIIERPSDEIEVPQLIR 137 (646)
Q Consensus 61 vLP~~Vg~ww~~s~kyt~~gV~~eT~~~F~~~~~l~~---~~s~~~lL~iLS~A~EF~~~~~~~i~vR~~E~~eL~~L~~ 137 (646)
+.|+-+|+.- +..+|...|+.+|. ..++. ..+..++|.++|.+.||. ++++|++|..++.++..
T Consensus 477 ~~~t~lG~~~------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~i~~~~~e~~-----~i~~r~~e~~~l~~~~~ 543 (720)
T 2zj8_A 477 IRPLSLGIRT------AKLYIDPYTAKMFK--DKMEEVVKDPNPIGIFHLISLTPDIT-----PFNYSKREFERLEEEYY 543 (720)
T ss_dssp EEECHHHHHH------HHHTCCHHHHHHHH--HHHHHHHHSCCHHHHHHHHHTSTTCC-----CCCCCHHHHHHHHHHHH
T ss_pred EeeChHHHHH------HHHcCCHHHHHHHH--HHHHhhccCCCHHHHHHHhccCcccc-----ccccCHHHHHHHHHHHH
Confidence 3567777664 24467777999997 33433 377889999999999998 99999999999888864
Q ss_pred hC------CCCCcCCCCCCCCcc-------hhHHHHHHHHHHhcCCCCChhh-----HHHHHHHHHHhhhHHHHHHHHHH
Q psy12216 138 QI------PNLGEKNRERPLYHK-------YSIKARALIYAHLSNMQLTSET-----LEADRMYIVKKCPYLLQEMVTCI 199 (646)
Q Consensus 138 ~l------p~~~~k~k~~~~~~~-------~~~Ka~lLLqAhLsRi~Lp~~~-----L~~D~~~VL~~a~RLl~AmidIa 199 (646)
.. +.+. + ....+ ++.|+++|||+|++|.+++... +..|+.+|+++|.||++||++||
T Consensus 544 ~~~~~~~~~~p~-~----~~~~~~~~~~~~~~~k~~llL~~~i~~~~l~~i~~~~~~~~gdl~~~~~~a~~l~~a~~~i~ 618 (720)
T 2zj8_A 544 EFKDRLYFDDPY-I----SGYDPYLERKFFRAFKTALVLLAWINEVPEGEIVEKYSVEPGDIYRIVETAEWLVYSLKEIA 618 (720)
T ss_dssp HHGGGCSSCCTT-S----SCCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccccccccccc-c----ccccchhhhhHHHHHHHHHHHHHHHhCCCHHHHHHHhCCChHhHHHHHHHHHHHHHHHHHHH
Confidence 31 1111 0 00112 7899999999999999975322 58899999999999999999999
Q ss_pred HHHHHHHhhccCcccchHHHHHHHHHHHHHHHhccCCCCCCcccCCCCCHHHHHHHhhhccCCCCHHHHHcCCHHHHHHH
Q psy12216 200 SQLILLAYAQRVPRLIHIETLENVMKLCPMIVQGMWDFKNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSV 279 (646)
Q Consensus 200 ~~~g~la~~~~w~~~p~L~~~l~~l~L~QmIvQa~W~~~spLlQLPh~~~e~l~~le~~k~~i~tl~~L~~l~~~er~~L 279 (646)
...||. ..+..+.+|+|||.||+|...+||+|||||+...+++|. +.++.|+.+|+.++++++..+
T Consensus 619 ~~~g~~------------~~~~~l~~l~~rl~~gv~~e~~~L~qlp~v~~~rar~L~--~~G~~s~~dl~~~~~~~l~~~ 684 (720)
T 2zj8_A 619 KVLGAY------------EIVDYLETLRVRVKYGIREELIPLMQLPLVGRRRARALY--NSGFRSIEDISQARPEELLKI 684 (720)
T ss_dssp HHHTCG------------GGHHHHHHHHHHHHHTCCGGGGGGTTSTTCCHHHHHHHH--TTTCCSHHHHHTCCHHHHHTS
T ss_pred HHcCcH------------HHHHHHHHHHHHHHcCCCccchhhhhCCCCCHHHHHHHH--HcCCCCHHHHHhCCHHHHHHh
Confidence 887761 123334459999999999999999999999999999994 568999999999999999876
Q ss_pred HhcCCHHHHHHHHHHHccCCc
Q psy12216 280 VKFMNDEQYSDMLKVLGNMPY 300 (646)
Q Consensus 280 L~~ls~~q~~ev~~vl~~~P~ 300 (646)
..++++.++++..++..+|.
T Consensus 685 -~~~~~~i~~~~~~~~~~~~~ 704 (720)
T 2zj8_A 685 -EGIGVKTVEAIFKFLGKNVK 704 (720)
T ss_dssp -TTCCHHHHHHHHHHHC----
T ss_pred -HhHHHHHHHHHHHhcccccc
Confidence 66899999999999999998
No 6
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.77 E-value=6.9e-19 Score=203.84 Aligned_cols=209 Identities=11% Similarity=0.047 Sum_probs=160.9
Q ss_pred cccchhhhhhhcccccccCcchHHHHHHHHHhhccCCC-CCHHHHHHHHhcccccccccCCCCccCCchhhHHHHHHHh-
Q psy12216 61 ALPTAVGMWWYKSIRYTGDKVLLETINFYYAFFQITPH-MALKRVLMILGASLEFDRRFNSEIIERPSDEIEVPQLIRQ- 138 (646)
Q Consensus 61 vLP~~Vg~ww~~s~kyt~~gV~~eT~~~F~~~~~l~~~-~s~~~lL~iLS~A~EF~~~~~~~i~vR~~E~~eL~~L~~~- 138 (646)
+-|+-+|+.- +..+|...|+++|. ..++.. .+..++|.++|.+.||. ++++|++| .++.++...
T Consensus 474 ~~~t~lG~~~------~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~i~~~~e~~-----~i~~r~~e-~~~~~~~~~~ 539 (702)
T 2p6r_A 474 LAPTKLGSLV------SRLYIDPLTGFIFH--DVLSRMELSDIGALHLICRTPDME-----RLTVRKTD-SWVEEEAFRL 539 (702)
T ss_dssp EEECHHHHHH------HHTTCCHHHHHHHH--HHTTTCCCCHHHHHHHHHHSTTSC-----CCCCCTTT-HHHHHHHHHH
T ss_pred eccChHHHHH------HHHhCCHHHHHHHH--HHhhcccCCHHHHHHHhhCCcccc-----cCCCCCch-HHHHHHHHhc
Confidence 4577777774 34567788999997 445554 67779999999999998 99999999 566666543
Q ss_pred -CCCCCcCCCCCCCC--cchhHHHHHHHHHHhcCCCCCh----hh-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcc
Q psy12216 139 -IPNLGEKNRERPLY--HKYSIKARALIYAHLSNMQLTS----ET-LEADRMYIVKKCPYLLQEMVTCISQLILLAYAQR 210 (646)
Q Consensus 139 -lp~~~~k~k~~~~~--~~~~~Ka~lLLqAhLsRi~Lp~----~~-L~~D~~~VL~~a~RLl~AmidIa~~~g~la~~~~ 210 (646)
.+............ ..++.|+++|||||++|.+++. .. +..|+.+|+++|.||++||++||...||
T Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~k~~~lL~~~~~~~~l~~i~~~~~~~~gdl~~i~~~a~~l~~a~~~i~~~~g~------ 613 (702)
T 2p6r_A 540 RKELSYYPSDFSVEYDWFLSEVKTALCLKDWIEEKDEDEICAKYGIAPGDLRRIVETAEWLSNAMNRIAEEVGN------ 613 (702)
T ss_dssp GGGSSCCCCTTSTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC------
T ss_pred cccccCCcchhhhhhhhhhhhHHHHHHHHHHHcCCChHHHHHHhCCcHHhHHHHHHHHHHHHHHHHHHHHHcCH------
Confidence 22211000000000 1188999999999999998753 11 4789999999999999999999987654
Q ss_pred CcccchHHHHHHHHHHHHHHHhccCCCCCCcccCCCCCHHHHHHHhhhccCCCCHHHHHcCCHHHHHHHHhcCCHHHHHH
Q psy12216 211 VPRLIHIETLENVMKLCPMIVQGMWDFKNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSD 290 (646)
Q Consensus 211 w~~~p~L~~~l~~l~L~QmIvQa~W~~~spLlQLPh~~~e~l~~le~~k~~i~tl~~L~~l~~~er~~LL~~ls~~q~~e 290 (646)
. .+++|+|||.||+|...+||+|||||+...+++|. +.++.|+.+|++++ .++..+++ +.+++.
T Consensus 614 ------~----~l~~l~~ri~~gv~~~~~~L~qlp~v~~~~ar~l~--~~g~~s~~~l~~~~-~~l~~ll~---~~~~~~ 677 (702)
T 2p6r_A 614 ------T----SVSGLTERIKHGVKEELLELVRIRHIGRVRARKLY--NAGIRNAEDIVRHR-EKVASLIG---RGIAER 677 (702)
T ss_dssp ------C----SSTTHHHHHHHTCCGGGHHHHTSTTCCHHHHHHHH--TTTCCSHHHHHHTH-HHHHHHHC---HHHHHH
T ss_pred ------H----HHHHHHHHHHcCCCcchHhhhcCCCCCHHHHHHHH--HcCCCCHHHHHhhh-HHHHHHhC---hhHHHH
Confidence 2 67889999999999999999999999999999994 46799999999999 88888774 889999
Q ss_pred HHHHHccCCceeEEee
Q psy12216 291 MLKVLGNMPYVDLHVQ 306 (646)
Q Consensus 291 v~~vl~~~P~L~I~a~ 306 (646)
+.+.+. +|.++|++.
T Consensus 678 i~~~~~-~p~~~~~~~ 692 (702)
T 2p6r_A 678 VVEGIS-VKSLNPESA 692 (702)
T ss_dssp HHHHHH-HHC------
T ss_pred HHHhcC-CCccCcchh
Confidence 999999 999999753
No 7
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.69 E-value=1.1e-16 Score=185.43 Aligned_cols=209 Identities=13% Similarity=0.078 Sum_probs=165.0
Q ss_pred cccchhhhhhhcccccccCcchHHHHHHHHHhhccCCCCCHHHHHHHHhcccccccccCCCCccCCchhhHHHHHHHhC-
Q psy12216 61 ALPTAVGMWWYKSIRYTGDKVLLETINFYYAFFQITPHMALKRVLMILGASLEFDRRFNSEIIERPSDEIEVPQLIRQI- 139 (646)
Q Consensus 61 vLP~~Vg~ww~~s~kyt~~gV~~eT~~~F~~~~~l~~~~s~~~lL~iLS~A~EF~~~~~~~i~vR~~E~~eL~~L~~~l- 139 (646)
+-|+-+|++- +..+|...|+++|..........+..++|.++|.+.||. ++++|++|..++.++..+.
T Consensus 493 ~~~t~lG~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~-----~~~~r~~e~~~l~~~~~~~~ 561 (715)
T 2va8_A 493 FALTNFGKRV------ADLYINPFTADIIRKGLEGHKASCELAYLHLLAFTPDGP-----LVSVGRNEEEELIELLEDLD 561 (715)
T ss_dssp EEECHHHHHH------HHHTCCHHHHHHHHHHHHHSCCCCHHHHHHHHHHSTTSC-----CCCCCHHHHHHHHHHHTTCS
T ss_pred EeeChHHHHH------HHHcCCHhHHHHHHHHhhhccCCCHHHHHHHhhcCcccc-----cCccChHHHHHHHHHHHhcc
Confidence 3567777764 244677889999973322222578999999999999998 9999999999998886432
Q ss_pred CCCCcCCCCCCCCc------chhHHHHHHHHHHhcCCCCCh----hhH-HHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh
Q psy12216 140 PNLGEKNRERPLYH------KYSIKARALIYAHLSNMQLTS----ETL-EADRMYIVKKCPYLLQEMVTCISQLILLAYA 208 (646)
Q Consensus 140 p~~~~k~k~~~~~~------~~~~Ka~lLLqAhLsRi~Lp~----~~L-~~D~~~VL~~a~RLl~AmidIa~~~g~la~~ 208 (646)
+.... ..+... .++.|+++|||||++|.++.. ..+ ..|+.+++++|.+|++||.+||...||
T Consensus 562 ~~~~~---~~~~~~~~~~~~~~~~k~~~ll~~~~~~~~~~~i~~~y~~~~gdl~~l~~~a~~l~~a~~~i~~~~~~---- 634 (715)
T 2va8_A 562 CELLI---EEPYEEDEYSLYINALKVALIMKDWMDEVDEDTILSKYNIGSGDLRNMVETMDWLTYSAYHLSRELKL---- 634 (715)
T ss_dssp SCCSS---CCCSSHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred hhhcc---cccccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHCCChhhHHHHHHHHHHHHHHHHHHHHHhCc----
Confidence 22110 011111 278999999999999999753 222 779999999999999999999987665
Q ss_pred ccCcccchHHHHHHHHHHHHHHHhccCCCCCCcccCCCCCHHHHHHHhhhccCCCCHHHHHcCCHHHHHHHHhcCCHHHH
Q psy12216 209 QRVPRLIHIETLENVMKLCPMIVQGMWDFKNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQY 288 (646)
Q Consensus 209 ~~w~~~p~L~~~l~~l~L~QmIvQa~W~~~spLlQLPh~~~e~l~~le~~k~~i~tl~~L~~l~~~er~~LL~~ls~~q~ 288 (646)
...+..+++|+++|.+|+|+..+||+|||||+...+++|. +.++.++.+|+ +++.++..+++ +.++
T Consensus 635 --------~~~~~~l~~l~~rl~~gv~~e~~~L~qlp~i~~~rar~L~--~~g~~s~~~l~-~~~~~l~~~l~---~~~~ 700 (715)
T 2va8_A 635 --------NEHADKLRILNLRVRDGIKEELLELVQISGVGRKRARLLY--NNGIKELGDVV-MNPDKVKNLLG---QKLG 700 (715)
T ss_dssp --------HHHHHHHHHHHHHHHHTCCGGGHHHHTSTTCCHHHHHHHH--HTTCCSHHHHH-HCHHHHHHHHC---HHHH
T ss_pred --------HHHHHHHHHHHHHHHcCCChhhcchhhCCCCCHHHHHHHH--HcCCCCHHHHh-CCHHHHHHHhC---hhHH
Confidence 4457889999999999999999999999999999999995 46799999999 99999999874 7888
Q ss_pred HHHHH-HHccCCce
Q psy12216 289 SDMLK-VLGNMPYV 301 (646)
Q Consensus 289 ~ev~~-vl~~~P~L 301 (646)
+.+.+ +...+|.+
T Consensus 701 ~~i~~~~~~~~~~~ 714 (715)
T 2va8_A 701 EKVVQEAARLLNRF 714 (715)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHhhccC
Confidence 88888 66667765
No 8
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=98.54 E-value=5.6e-08 Score=102.74 Aligned_cols=89 Identities=18% Similarity=0.328 Sum_probs=76.6
Q ss_pred ceecCCCCCcCccceEEEeecccccccHHHHHhcChHHHhhhhccCChHhHHHHHHHhcCCCceEEEEEEEEccCCcccc
Q psy12216 367 GTITPVLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMPYVDLHVQPEVIDDEATTE 446 (646)
Q Consensus 367 ~~~~~qlPh~~ee~~~~i~~~k~~i~~~~~l~~l~~eeRr~lL~~l~~~~~~dv~~v~~~~P~i~l~v~~~v~~~~~~~~ 446 (646)
..++.||||+..+..+.+ .++.+.|+++|+.+++++|..++ ++++.++.+|.+++.+||.|+|++ +|.|+
T Consensus 156 ~~pL~Qlp~i~~~~~~~l--~~~~i~s~~~l~~~~~~e~~~ll-~~~~~~~~~v~~~~~~~P~l~v~~--~v~~~----- 225 (328)
T 3im1_A 156 DNPLRQIPHFNNKILEKC--KEINVETVYDIMALEDEERDEIL-TLTDSQLAQVAAFVNNYPNVELTY--SLNNS----- 225 (328)
T ss_dssp SCGGGGSTTCCHHHHHHH--HHTTCCSHHHHHHSCHHHHHHHC-CCCHHHHHHHHHHHHHCCCEEEEE--EETTG-----
T ss_pred CCceeCCCCCCHHHHHHH--HhCCCCCHHHHhcCCHHHHHhHh-CCCHHHHHHHHHHHHhCCCEEEEE--EecCC-----
Confidence 367899999999887665 34568999999999999999876 799999999999999999988864 56664
Q ss_pred ccccccccccccCCCCCcccccCceEEEEEEEEecC
Q psy12216 447 YTAGAIITPEVIDDEATTEYTAGAIITVTCTLMRKP 482 (646)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~i~~g~ivt~~v~l~r~~ 482 (646)
..|++|++++|+|+|+|.+
T Consensus 226 -----------------~~i~~~~~~~l~v~l~~~~ 244 (328)
T 3im1_A 226 -----------------DSLISGVKQKITIQLTRDV 244 (328)
T ss_dssp -----------------GGCCTTSEEEEEEEEEESS
T ss_pred -----------------CcccCCCeEEEEEEEEECC
Confidence 4799999999999999954
No 9
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=98.53 E-value=8.7e-08 Score=101.76 Aligned_cols=87 Identities=25% Similarity=0.471 Sum_probs=75.6
Q ss_pred eecCCCCCcCccceEEEeecccccccHHHHHhcChHHHhhhhccCChHhHHHHHHHhcCCCceEEEEEEEEccCCccccc
Q psy12216 368 TITPVLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMPYVDLHVQPEVIDDEATTEY 447 (646)
Q Consensus 368 ~~~~qlPh~~ee~~~~i~~~k~~i~~~~~l~~l~~eeRr~lL~~l~~~~~~dv~~v~~~~P~i~l~v~~~v~~~~~~~~~ 447 (646)
.++.||||+..+..+.+ .++.+.|+++|+.+++++|..+|. +++.++.+|.+++.+||.|+|+ ++|.++
T Consensus 161 ~pL~Qlp~i~~~~~~~l--~~~~i~s~~~l~~~~~~e~~~ll~-l~~~~~~~i~~~~~~~P~l~v~--~~v~~~------ 229 (339)
T 2q0z_X 161 SYLKQLPHFTSEHIKRC--TDKGVESVFDIMEMEDEERNALLQ-LTDSQIADVARFCNRYPNIELS--YEVVDK------ 229 (339)
T ss_dssp CGGGGSTTCCHHHHHHH--HHTTCCSHHHHHHSCHHHHHHHHC-CCHHHHHHHHHHHTTSCCEEEE--EEETTG------
T ss_pred CceecCCCCCHHHHHHH--HhcCCCCHHHHHhCCHHHHHHHHC-CCHHHHHHHHHHHHhCCcEEEE--EEEccC------
Confidence 57899999999877666 345688999999999999999875 9999999999999999998875 456664
Q ss_pred cccccccccccCCCCCcccccCceEEEEEEEEec
Q psy12216 448 TAGAIITPEVIDDEATTEYTAGAIITVTCTLMRK 481 (646)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~i~~g~ivt~~v~l~r~ 481 (646)
+.||+|++++|+|+|+|.
T Consensus 230 ----------------~~i~~~~~~~l~v~l~~~ 247 (339)
T 2q0z_X 230 ----------------DSIRSGGPVVVLVQLERE 247 (339)
T ss_dssp ----------------GGCBTTSEEEEEEEEEEC
T ss_pred ----------------ccccCCCcEEEEEEEEEC
Confidence 479999999999999996
No 10
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.38 E-value=0.08 Score=43.42 Aligned_cols=26 Identities=23% Similarity=0.648 Sum_probs=23.4
Q ss_pred hhhhHhhhccCHHHHHhHHHhCCCCC
Q psy12216 2 KLTKAYQALTDEESRRNFEKYGNPDG 27 (646)
Q Consensus 2 ~ItKAYkaLTDe~~R~N~ekYGnPDG 27 (646)
.|+.||+.|+|+..|..|..||+..+
T Consensus 51 ~i~~Ay~~L~d~~~R~~YD~~~~~~~ 76 (78)
T 2ctp_A 51 AIGTAYAVLSNPEKRKQYDQFGSGPS 76 (78)
T ss_dssp HHHHHHHHHTSHHHHHHHHHTCSCSC
T ss_pred HHHHHHHHHCCHHHHHHHHHcCcccc
Confidence 68999999999999999999997543
No 11
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=91.67 E-value=0.081 Score=42.84 Aligned_cols=23 Identities=30% Similarity=0.733 Sum_probs=21.2
Q ss_pred hhhhHhhhccCHHHHHhHHHhCC
Q psy12216 2 KLTKAYQALTDEESRRNFEKYGN 24 (646)
Q Consensus 2 ~ItKAYkaLTDe~~R~N~ekYGn 24 (646)
.|+.||+.|+|+..|..|..||.
T Consensus 50 ~i~~Ay~~L~d~~~R~~YD~~g~ 72 (73)
T 2och_A 50 QISQAYEVLSDEKKRQIYDQGGE 72 (73)
T ss_dssp HHHHHHHHHTSHHHHHHHHHTC-
T ss_pred HHHHHHHHHCCHHHHHHHHhcCC
Confidence 58999999999999999999995
No 12
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.78 E-value=0.13 Score=42.22 Aligned_cols=24 Identities=38% Similarity=0.840 Sum_probs=22.2
Q ss_pred hhhhHhhhccCHHHHHhHHHhCCC
Q psy12216 2 KLTKAYQALTDEESRRNFEKYGNP 25 (646)
Q Consensus 2 ~ItKAYkaLTDe~~R~N~ekYGnP 25 (646)
.|+.||+.|+|+..|..|..||+-
T Consensus 52 ~i~~Ay~~L~d~~~R~~YD~~g~~ 75 (79)
T 2dn9_A 52 QLAEAYEVLSDEVKRKQYDAYGSG 75 (79)
T ss_dssp HHHHHHHHHHSHHHHHHHHHSCCC
T ss_pred HHHHHHHHHCCHHHHHHHHhccCc
Confidence 689999999999999999999953
No 13
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=90.49 E-value=0.29 Score=39.72 Aligned_cols=56 Identities=20% Similarity=0.235 Sum_probs=49.1
Q ss_pred CCcccCCCCCHHHHHHHhhhccCCCCHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHcc
Q psy12216 239 NPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGN 297 (646)
Q Consensus 239 spLlQLPh~~~e~l~~le~~k~~i~tl~~L~~l~~~er~~LL~~ls~~q~~ev~~vl~~ 297 (646)
.+|.+||+++...+.+| ...++.|+++|...+.+++..+. ++++.....++..++.
T Consensus 7 ~~l~~L~Gi~~~~~~kL--~e~Gi~TvedlA~~~~~eL~~i~-gise~kA~~ii~aAr~ 62 (70)
T 1wcn_A 7 DDLLNLEGVDRDLAFKL--AARGVCTLEDLAEQGIDDLADIE-GLTDEKAGALIMAARN 62 (70)
T ss_dssp HHHHSSTTCCHHHHHHH--HTTTCCSHHHHHTSCHHHHHTSS-SCCHHHHHHHHHHHHH
T ss_pred hHHHHcCCCCHHHHHHH--HHcCCCcHHHHHcCCHHHHHHcc-CCCHHHHHHHHHHHHH
Confidence 46889999999999999 56789999999999998887755 6899999999988876
No 14
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=90.12 E-value=0.14 Score=41.84 Aligned_cols=24 Identities=33% Similarity=0.787 Sum_probs=22.2
Q ss_pred hhhhHhhhccCHHHHHhHHHhCCC
Q psy12216 2 KLTKAYQALTDEESRRNFEKYGNP 25 (646)
Q Consensus 2 ~ItKAYkaLTDe~~R~N~ekYGnP 25 (646)
.|+.||+.|+|+..|..|..||..
T Consensus 47 ~i~~Ay~~L~d~~~R~~Yd~~~~~ 70 (77)
T 1hdj_A 47 EIAEAYDVLSDPRKREIFDRYGEE 70 (77)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTCGG
T ss_pred HHHHHHHHHCCHHHHHHHHHHccc
Confidence 589999999999999999999953
No 15
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=90.03 E-value=0.087 Score=45.60 Aligned_cols=23 Identities=30% Similarity=0.814 Sum_probs=21.7
Q ss_pred hhhhHhhhccCHHHHHhHHHhCC
Q psy12216 2 KLTKAYQALTDEESRRNFEKYGN 24 (646)
Q Consensus 2 ~ItKAYkaLTDe~~R~N~ekYGn 24 (646)
.|+.||+.|+|+..|..|..||.
T Consensus 48 ~I~~AY~vL~d~~~R~~YD~~g~ 70 (99)
T 2lgw_A 48 EVAEAYEVLSDKHKREIYDRYGR 70 (99)
T ss_dssp HHHHHHHHHHSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHhCc
Confidence 58999999999999999999994
No 16
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=89.71 E-value=0.13 Score=44.97 Aligned_cols=23 Identities=30% Similarity=0.697 Sum_probs=21.6
Q ss_pred hhhhHhhhccCHHHHHhHHHhCC
Q psy12216 2 KLTKAYQALTDEESRRNFEKYGN 24 (646)
Q Consensus 2 ~ItKAYkaLTDe~~R~N~ekYGn 24 (646)
.|+.||+.|+|+..|..|..||.
T Consensus 64 ~i~~AY~~L~d~~~R~~YD~~~~ 86 (109)
T 2qsa_A 64 VIATAYETLKDDEAKTNYDYYLD 86 (109)
T ss_dssp HHHHHHHHHHSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHhcc
Confidence 68999999999999999999993
No 17
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.35 E-value=0.12 Score=42.66 Aligned_cols=23 Identities=30% Similarity=0.811 Sum_probs=21.8
Q ss_pred hhhhHhhhccCHHHHHhHHHhCC
Q psy12216 2 KLTKAYQALTDEESRRNFEKYGN 24 (646)
Q Consensus 2 ~ItKAYkaLTDe~~R~N~ekYGn 24 (646)
.|+.||+.|+|+..|..|..||+
T Consensus 55 ~i~~Ay~~L~d~~~R~~YD~~g~ 77 (82)
T 2ej7_A 55 QVAEAYEVLSDAKKRDIYDRYGS 77 (82)
T ss_dssp HHHHHHHHHSSTTHHHHHHHTCC
T ss_pred HHHHHHHHHCCHHHHHHHHHcCc
Confidence 58999999999999999999995
No 18
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=89.26 E-value=0.17 Score=42.94 Aligned_cols=23 Identities=26% Similarity=0.704 Sum_probs=21.4
Q ss_pred hhhhHhhhccCHHHHHhHHHhCC
Q psy12216 2 KLTKAYQALTDEESRRNFEKYGN 24 (646)
Q Consensus 2 ~ItKAYkaLTDe~~R~N~ekYGn 24 (646)
.|+.||+.|+|+..|..|..||.
T Consensus 50 ~i~~Ay~~L~d~~~R~~YD~~~~ 72 (92)
T 2o37_A 50 EISEAFEILNDPQKREIYDQYGL 72 (92)
T ss_dssp HHHHHHHHHTSHHHHHHHHHHCH
T ss_pred HHHHHHHHHCCHHHHHHHHHHCH
Confidence 68999999999999999999983
No 19
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.06 E-value=0.17 Score=42.80 Aligned_cols=24 Identities=25% Similarity=0.556 Sum_probs=22.2
Q ss_pred hhhhHhhhccCHHHHHhHHHhCCC
Q psy12216 2 KLTKAYQALTDEESRRNFEKYGNP 25 (646)
Q Consensus 2 ~ItKAYkaLTDe~~R~N~ekYGnP 25 (646)
.|+.||+.|+|+..|..|..||..
T Consensus 55 ~i~~Ay~~L~d~~~R~~Yd~~~~~ 78 (92)
T 2dmx_A 55 LVSEAYEVLSDSKKRSLYDRAGCD 78 (92)
T ss_dssp HHHHHHHHHHSHHHHHHHHHHCSC
T ss_pred HHHHHHHHHCCHHHHHHHHHhCcc
Confidence 689999999999999999999963
No 20
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=87.47 E-value=0.17 Score=43.87 Aligned_cols=27 Identities=30% Similarity=0.661 Sum_probs=24.2
Q ss_pred hhhhHhhhccCHHHHHhHHHhCCCCCC
Q psy12216 2 KLTKAYQALTDEESRRNFEKYGNPDGP 28 (646)
Q Consensus 2 ~ItKAYkaLTDe~~R~N~ekYGnPDGp 28 (646)
.|+.||+.|+|+..|..|..||+..-.
T Consensus 48 ~i~~Ay~~L~d~~~R~~YD~~~~~~~~ 74 (103)
T 1bq0_A 48 EIKEAYEVLTDSQKRAAYDQYGHAAFE 74 (103)
T ss_dssp HHTTTTTSTTCSHHHHHTTTSTTTSSC
T ss_pred HHHHHHHHHCCHHHHHHHHHHhhhhhc
Confidence 589999999999999999999986544
No 21
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=86.80 E-value=0.29 Score=42.91 Aligned_cols=23 Identities=35% Similarity=0.641 Sum_probs=21.6
Q ss_pred hhhhHhhhccCHHHHHhHHHhCC
Q psy12216 2 KLTKAYQALTDEESRRNFEKYGN 24 (646)
Q Consensus 2 ~ItKAYkaLTDe~~R~N~ekYGn 24 (646)
.|+.||+.|+|+..|..|..||.
T Consensus 62 ~i~~Ay~vL~d~~~R~~YD~~g~ 84 (109)
T 2ctw_A 62 EINNAHAILTDATKRNIYDKYGS 84 (109)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTCH
T ss_pred HHHHHHHHHcCHHHHHHHHHhcc
Confidence 68999999999999999999994
No 22
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.98 E-value=0.19 Score=42.20 Aligned_cols=23 Identities=26% Similarity=0.771 Sum_probs=21.7
Q ss_pred hhhhHhhhccCHHHHHhHHHhCC
Q psy12216 2 KLTKAYQALTDEESRRNFEKYGN 24 (646)
Q Consensus 2 ~ItKAYkaLTDe~~R~N~ekYGn 24 (646)
.|+.||+.|+|+..|..|..||+
T Consensus 51 ~i~~Ay~~L~d~~~R~~Yd~~~~ 73 (88)
T 2ctr_A 51 EIAEAYETLSDANRRKEYDTLGH 73 (88)
T ss_dssp HHHHHHHHHHSSHHHHHHHHTCH
T ss_pred HHHHHHHHHCCHHHHHHHHHhCc
Confidence 68999999999999999999995
No 23
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=84.80 E-value=0.21 Score=48.02 Aligned_cols=42 Identities=17% Similarity=0.217 Sum_probs=31.9
Q ss_pred hhhhHhhhccCHHHHHhHHH---hCCCCCCCcc--ceeeccccchhc
Q psy12216 2 KLTKAYQALTDEESRRNFEK---YGNPDGPGAM--SFGIALPSYIVE 43 (646)
Q Consensus 2 ~ItKAYkaLTDe~~R~N~ek---YGnPDGpq~~--s~GIALP~wlve 43 (646)
.|++||+.|+|+..|..|.. +|.+-+.... ++.+.-|.||++
T Consensus 60 ~i~~AY~vL~dp~~R~~Yd~~l~~g~~~~~e~~~~~~~~~d~~fLme 106 (181)
T 3uo3_A 60 TLNQAYHTLKDPLRRSQYMLKLLRNIDLTQEQTSNEVTTSDPQLLLK 106 (181)
T ss_dssp SHHHHHHHHHSHHHHHHHHHHHHHCCCTTSHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHcChHHHHHHHHHHHhCCCccccccccccccCCHHHHHH
Confidence 69999999999999999998 6765554332 245667777776
No 24
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=84.22 E-value=0.44 Score=45.75 Aligned_cols=24 Identities=42% Similarity=0.945 Sum_probs=22.2
Q ss_pred hhhhHhhhccCHHHHHhHHHhCCC
Q psy12216 2 KLTKAYQALTDEESRRNFEKYGNP 25 (646)
Q Consensus 2 ~ItKAYkaLTDe~~R~N~ekYGnP 25 (646)
.|++||+.|+|+..|..|..||+.
T Consensus 47 ~i~~Ay~~L~~~~~r~~yd~~~~~ 70 (210)
T 3apq_A 47 KINRAYEVLKDEDLRKKYDKYGEK 70 (210)
T ss_dssp HHHHHHHHHTSHHHHHHHHHHTTT
T ss_pred HHHHHHHHhCCHHHHHHHHHhccc
Confidence 589999999999999999999953
No 25
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=83.98 E-value=2.2 Score=35.64 Aligned_cols=50 Identities=16% Similarity=0.231 Sum_probs=40.4
Q ss_pred CCCCCHHHHHHHhhhccCCCCHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHc
Q psy12216 244 LPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLG 296 (646)
Q Consensus 244 LPh~~~e~l~~le~~k~~i~tl~~L~~l~~~er~~LL~~ls~~q~~ev~~vl~ 296 (646)
.|.++++.++.+ .++++.|+.||+..++.+..++++ ++-+...++.+.+.
T Consensus 9 ~p~Lse~~~~~L--~~~~I~Tv~Dfl~~d~~eL~~~~~-ls~~~v~~l~r~l~ 58 (83)
T 2kz3_A 9 CPGLTEEMIQLL--RSHRIKTVVDLVSADLEEVAQKCG-LSYKALVALRRVLL 58 (83)
T ss_dssp STTCCHHHHHHH--HHTTCCCHHHHTTSCHHHHHHHHT-CCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHH--HHCCCCCHHHHHhCCHHHHHHHhC-CCHHHHHHHHHHHH
Confidence 489999999999 567899999999999999998874 77666655555443
No 26
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.30 E-value=0.4 Score=42.20 Aligned_cols=23 Identities=43% Similarity=0.666 Sum_probs=21.7
Q ss_pred hhhhHhhhccCHHHHHhHHHhCC
Q psy12216 2 KLTKAYQALTDEESRRNFEKYGN 24 (646)
Q Consensus 2 ~ItKAYkaLTDe~~R~N~ekYGn 24 (646)
.|+.||+.|+|+..|..|..||+
T Consensus 65 ~i~~Ay~vL~d~~~R~~YD~~~~ 87 (112)
T 2ctq_A 65 KLQKAKEILTNEESRARYDHWRR 87 (112)
T ss_dssp HHHHHHHHHHSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHhhh
Confidence 68999999999999999999985
No 27
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=82.81 E-value=0.59 Score=44.40 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=21.4
Q ss_pred hhhhHhhhccCHHHHHhHHHhCC
Q psy12216 2 KLTKAYQALTDEESRRNFEKYGN 24 (646)
Q Consensus 2 ~ItKAYkaLTDe~~R~N~ekYGn 24 (646)
.|+.||+.|+|+..|..|..+.+
T Consensus 53 ~In~AY~vL~dp~~R~~Yd~~l~ 75 (171)
T 1fpo_A 53 TINQAWQTLRHPLMRAEYLLSLH 75 (171)
T ss_dssp HHHHHHHHHHSHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCchHHHHHHHHhc
Confidence 58999999999999999999875
No 28
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=81.63 E-value=0.25 Score=43.96 Aligned_cols=22 Identities=18% Similarity=0.410 Sum_probs=20.7
Q ss_pred hhhhHhhhccCHHHHHhHHHhC
Q psy12216 2 KLTKAYQALTDEESRRNFEKYG 23 (646)
Q Consensus 2 ~ItKAYkaLTDe~~R~N~ekYG 23 (646)
+|+.||+.|+|+..|..|..||
T Consensus 51 ~I~~AYevL~d~~~R~~~~~~~ 72 (114)
T 1gh6_A 51 KMNTLYKKMEDGVKYAHQPDFG 72 (114)
T ss_dssp HHHHHHHHHHHHHHSCCSSCCS
T ss_pred HHHHHHHHHCCHHHHHHhhhcc
Confidence 6899999999999999999887
No 29
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=81.23 E-value=0.36 Score=46.10 Aligned_cols=23 Identities=17% Similarity=0.398 Sum_probs=21.8
Q ss_pred hhhhHhhhccCHHHHHhHHHhCC
Q psy12216 2 KLTKAYQALTDEESRRNFEKYGN 24 (646)
Q Consensus 2 ~ItKAYkaLTDe~~R~N~ekYGn 24 (646)
+|+.||+.|+|+..|..|..||.
T Consensus 54 ~I~~AYevLsdp~kR~~YD~~G~ 76 (174)
T 2pf4_E 54 KMNTLYKKMEDGVKYAHQPDFGG 76 (174)
T ss_dssp HHHHHHHHHHHHHHHHTSCGGGG
T ss_pred HHHHHHHHhCCHHHHHHHhccCC
Confidence 69999999999999999999994
No 30
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=79.02 E-value=0.19 Score=46.80 Aligned_cols=26 Identities=23% Similarity=0.517 Sum_probs=22.8
Q ss_pred hhhhHhhhccCHHHHHhHHHhCCCCC
Q psy12216 2 KLTKAYQALTDEESRRNFEKYGNPDG 27 (646)
Q Consensus 2 ~ItKAYkaLTDe~~R~N~ekYGnPDG 27 (646)
.|++||+.|+|+..|..|..+++..+
T Consensus 61 ~i~~Ay~~L~dp~~R~~Yd~~~~~~~ 86 (155)
T 2l6l_A 61 EIDQAWKILGNEETKREYDLQRCEDD 86 (155)
T ss_dssp HHHHHHHHSSSHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHcchhh
Confidence 68999999999999999999886443
No 31
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.20 E-value=1 Score=38.56 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=20.8
Q ss_pred hhhhHhhhccCHHHHHhHHHhCC
Q psy12216 2 KLTKAYQALTDEESRRNFEKYGN 24 (646)
Q Consensus 2 ~ItKAYkaLTDe~~R~N~ekYGn 24 (646)
.|+.||+.|+|+..|..|..+..
T Consensus 62 ~i~~Ay~~L~d~~~R~~YD~~l~ 84 (99)
T 2yua_A 62 RISQAYVVLGSATLRRKYDRGLL 84 (99)
T ss_dssp HHHHHHHHTTSHHHHHHHHHTCC
T ss_pred HHHHHHHHHCCHHHHHHHHHhcc
Confidence 68999999999999999998653
No 32
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=78.03 E-value=0.84 Score=52.46 Aligned_cols=60 Identities=17% Similarity=0.172 Sum_probs=49.7
Q ss_pred ceecCCCCCcCccceEEEeecccccccHHHHHhcChHHHhhhhccCChHhHHHHHHHhcCCCc
Q psy12216 367 GTITPVLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMPY 429 (646)
Q Consensus 367 ~~~~~qlPh~~ee~~~~i~~~k~~i~~~~~l~~l~~eeRr~lL~~l~~~~~~dv~~v~~~~P~ 429 (646)
..++.|+||++....+.+ .+..++|+++|+.++++++..+ ..+.+.+++++..+++++|.
T Consensus 645 ~~~L~qlp~v~~~rar~L--~~~G~~s~~dl~~~~~~~l~~~-~~~~~~i~~~~~~~~~~~~~ 704 (720)
T 2zj8_A 645 LIPLMQLPLVGRRRARAL--YNSGFRSIEDISQARPEELLKI-EGIGVKTVEAIFKFLGKNVK 704 (720)
T ss_dssp GGGGTTSTTCCHHHHHHH--HTTTCCSHHHHHTCCHHHHHTS-TTCCHHHHHHHHHHHC----
T ss_pred chhhhhCCCCCHHHHHHH--HHcCCCCHHHHHhCCHHHHHHh-HhHHHHHHHHHHHhcccccc
Confidence 478899999999988777 3456999999999999999976 77999999999999999998
No 33
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=76.46 E-value=0.52 Score=49.47 Aligned_cols=26 Identities=23% Similarity=0.494 Sum_probs=0.0
Q ss_pred hhhhHhhhccCHHHHHhHHHhCCCCC
Q psy12216 2 KLTKAYQALTDEESRRNFEKYGNPDG 27 (646)
Q Consensus 2 ~ItKAYkaLTDe~~R~N~ekYGnPDG 27 (646)
+|+.||+.|+|+..|..|.+||...+
T Consensus 72 ~i~~Ay~vL~d~~~R~~YD~~~~~~~ 97 (329)
T 3lz8_A 72 DLAEAWEVLKDEQRRAEYDQLWQHRN 97 (329)
T ss_dssp --------------------------
T ss_pred HHHHHHHHhhhhhhhcccchhhcccc
Confidence 68999999999999999999976543
No 34
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=73.95 E-value=1.3 Score=42.06 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=20.6
Q ss_pred hhhhHhhhccCHHHHHhHHHhCC
Q psy12216 2 KLTKAYQALTDEESRRNFEKYGN 24 (646)
Q Consensus 2 ~ItKAYkaLTDe~~R~N~ekYGn 24 (646)
.|++||+.|+|+..|..|....|
T Consensus 56 ~In~AY~vL~dp~~R~~Yd~~l~ 78 (174)
T 3hho_A 56 QINDAYQTLKDPLRRAEYLLSLQ 78 (174)
T ss_dssp HHHHHHHHHHSHHHHHHHHHHHT
T ss_pred HHHHHHHHHcChHHHHHHHHHcc
Confidence 58999999999999999998554
No 35
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=70.15 E-value=0.74 Score=52.74 Aligned_cols=61 Identities=5% Similarity=0.026 Sum_probs=47.8
Q ss_pred ceecCCCCCcCccceEEEeecccccccHHHHHhcChHHHhhhhccCChHhHHHHHHHhcCCCceEEEE
Q psy12216 367 GTITPVLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMPYVDLHV 434 (646)
Q Consensus 367 ~~~~~qlPh~~ee~~~~i~~~k~~i~~~~~l~~l~~eeRr~lL~~l~~~~~~dv~~v~~~~P~i~l~v 434 (646)
..++.|+||++....+.+ .+..++|+++|+.++ ++...++. +.+++.|.+.++ ||+++|.+
T Consensus 631 ~~~L~qlp~v~~~~ar~l--~~~g~~s~~~l~~~~-~~l~~ll~---~~~~~~i~~~~~-~p~~~~~~ 691 (702)
T 2p6r_A 631 LLELVRIRHIGRVRARKL--YNAGIRNAEDIVRHR-EKVASLIG---RGIAERVVEGIS-VKSLNPES 691 (702)
T ss_dssp GHHHHTSTTCCHHHHHHH--HTTTCCSHHHHHHTH-HHHHHHHC---HHHHHHHHHHHH-HHC-----
T ss_pred hHhhhcCCCCCHHHHHHH--HHcCCCCHHHHHhhh-HHHHHHhC---hhHHHHHHHhcC-CCccCcch
Confidence 478899999999988776 344599999999999 77776653 899999999999 99999864
No 36
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=66.78 E-value=5.2 Score=33.42 Aligned_cols=53 Identities=15% Similarity=0.359 Sum_probs=43.2
Q ss_pred CCcccCCCCCHHHHHHHhhhccCCCCHHHHHcCCHHHHHHHHhcCCHHH-HHHHHHHHcc
Q psy12216 239 NPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQ-YSDMLKVLGN 297 (646)
Q Consensus 239 spLlQLPh~~~e~l~~le~~k~~i~tl~~L~~l~~~er~~LL~~ls~~q-~~ev~~vl~~ 297 (646)
+.|..+|+|++...+.|-. ...++..+..++.+++..++. .+. ++.|+.+++.
T Consensus 18 s~L~~IpGIG~kr~~~LL~---~FgSl~~i~~AS~eEL~~vig---~~~~A~~I~~~l~~ 71 (84)
T 1z00_B 18 DFLLKMPGVNAKNCRSLMH---HVKNIAELAALSQDELTSILG---NAANAKQLYDFIHT 71 (84)
T ss_dssp HHHHTCSSCCHHHHHHHHH---HSSCHHHHHHSCHHHHHHHHS---CHHHHHHHHHHHTS
T ss_pred HHHHhCCCCCHHHHHHHHH---HcCCHHHHHHCCHHHHHHHhC---chHHHHHHHHHHHh
Confidence 5688999999998888754 367999999999999998854 455 8888888863
No 37
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=66.56 E-value=5.8 Score=31.09 Aligned_cols=54 Identities=15% Similarity=0.371 Sum_probs=43.2
Q ss_pred CCCcccCCCCCHHHHHHHhhhccCCCCHHHHHcCCHHHHHHHHhcCCHHH-HHHHHHHHcc
Q psy12216 238 KNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQ-YSDMLKVLGN 297 (646)
Q Consensus 238 ~spLlQLPh~~~e~l~~le~~k~~i~tl~~L~~l~~~er~~LL~~ls~~q-~~ev~~vl~~ 297 (646)
.+.|..+|++++...+.|-. ...++.++...+.++..+++ +.+. .+.|+++++.
T Consensus 3 ~s~L~~IpGIG~kr~~~LL~---~Fgs~~~i~~As~eeL~~vi---g~~~~A~~I~~~l~~ 57 (63)
T 2a1j_A 3 QDFLLKMPGVNAKNCRSLMH---HVKNIAELAALSQDELTSIL---GNAANAKQLYDFIHT 57 (63)
T ss_dssp CHHHHTSTTCCHHHHHHHHH---HCSSHHHHHTCCHHHHHHHH---SCHHHHHHHHHHHHC
T ss_pred HhHHHcCCCCCHHHHHHHHH---HcCCHHHHHHCCHHHHHHHc---CchHHHHHHHHHHhc
Confidence 35688999999988888754 35689999999999999885 4556 8888888853
No 38
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=64.86 E-value=12 Score=30.33 Aligned_cols=57 Identities=14% Similarity=0.216 Sum_probs=44.3
Q ss_pred CCcccCCCCCHHHHHHHhhhccCCCCHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHccCC
Q psy12216 239 NPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMP 299 (646)
Q Consensus 239 spLlQLPh~~~e~l~~le~~k~~i~tl~~L~~l~~~er~~LL~~ls~~q~~ev~~vl~~~P 299 (646)
.|+-+| .++......| ++.+|.|+.+|+.++.++... ++++..+-+++|...+..+.
T Consensus 9 ~~Ie~L-~LS~Ra~NcL--kragI~Tv~dL~~~s~~dLlk-i~n~G~kSl~EI~~~L~~~g 65 (73)
T 1z3e_B 9 MTIEEL-DLSVRSYNCL--KRAGINTVQELANKTEEDMMK-VRNLGRKSLEEVKAKLEELG 65 (73)
T ss_dssp CBGGGS-CCBHHHHHHH--HHTTCCBHHHHHTSCHHHHHT-STTCCHHHHHHHHHHHHHTT
T ss_pred CcHHHh-CCCHHHHHHH--HHcCCCcHHHHHcCCHHHHHH-cCCCCHHHHHHHHHHHHHhC
Confidence 455666 4777777777 456899999999999888665 35799999999999988753
No 39
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=63.16 E-value=3 Score=40.70 Aligned_cols=20 Identities=25% Similarity=0.255 Sum_probs=18.5
Q ss_pred hhhhHhhhccCHHHHHhHHH
Q psy12216 2 KLTKAYQALTDEESRRNFEK 21 (646)
Q Consensus 2 ~ItKAYkaLTDe~~R~N~ek 21 (646)
.|++||+.|+|+..|..|..
T Consensus 95 ~In~AY~vLsdp~~R~~Yd~ 114 (207)
T 3bvo_A 95 LVNDAYKTLLAPLSRGLYLL 114 (207)
T ss_dssp HHHHHHHHHHSHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHH
Confidence 68999999999999999964
No 40
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=61.29 E-value=2.2 Score=35.03 Aligned_cols=23 Identities=13% Similarity=0.212 Sum_probs=20.0
Q ss_pred hhhhHhhhccCHHHHHhHHHhCCC
Q psy12216 2 KLTKAYQALTDEESRRNFEKYGNP 25 (646)
Q Consensus 2 ~ItKAYkaLTDe~~R~N~ekYGnP 25 (646)
+|+.||+.|+|+..|.. ..||.|
T Consensus 54 ~i~~AYe~L~~~~~r~~-~~~g~~ 76 (79)
T 1faf_A 54 ELNSLWGTFKTEVYNLR-MNLGGT 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHT-TCCSSC
T ss_pred HHHHHHHHHhhHHHHHH-HhcCCc
Confidence 68999999999999998 458875
No 41
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=57.46 E-value=18 Score=30.35 Aligned_cols=57 Identities=14% Similarity=0.158 Sum_probs=44.6
Q ss_pred CCcccCCCCCHHHHHHHhhhccCCCCHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHccCC
Q psy12216 239 NPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMP 299 (646)
Q Consensus 239 spLlQLPh~~~e~l~~le~~k~~i~tl~~L~~l~~~er~~LL~~ls~~q~~ev~~vl~~~P 299 (646)
.|+-+| .++......| ++.+|.|+.+|+.++.++... ++++..+-+.+|...+..+-
T Consensus 12 ~~I~~L-~LSvRa~NcL--kragI~Tv~dL~~~se~dLlk-i~n~G~KSl~EI~~~L~~~G 68 (86)
T 3k4g_A 12 RPVDDL-ELTVRSANCL--XAEAIHYIGDLVQRTEVELLX-TPNLGXXSLTEIXDVLASRG 68 (86)
T ss_dssp SBGGGG-CCCHHHHHHH--HHTTCCBHHHHHHSCHHHHHT-STTCCHHHHHHHHHHHHTTT
T ss_pred CcHHHh-CCCHHHHHHH--HHcCCCcHHHHHhCCHHHHhh-ccccCcccHHHHHHHHHHcC
Confidence 344555 4677777777 456899999999999888765 35799999999999998874
No 42
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=57.40 E-value=10 Score=38.68 Aligned_cols=56 Identities=13% Similarity=0.112 Sum_probs=44.4
Q ss_pred CCcccCCCCCHHHHHHHhhhccCCCCHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHcc
Q psy12216 239 NPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGN 297 (646)
Q Consensus 239 spLlQLPh~~~e~l~~le~~k~~i~tl~~L~~l~~~er~~LL~~ls~~q~~ev~~vl~~ 297 (646)
.+|..||++++..+++| .+.++.|+++++..+..++..+. +++++....++..+..
T Consensus 3 ~~~~~l~gi~~~~~~kL--~~~gi~t~~~~~~~~~~~L~~~~-gis~~~a~~~i~~a~~ 58 (322)
T 2i1q_A 3 DNLTDLPGVGPSTAEKL--VEAGYIDFMKIATATVGELTDIE-GISEKAAAKMIMGARD 58 (322)
T ss_dssp --CTTSTTCCHHHHHHH--HHHTCCSHHHHHTCCHHHHHTST-TCCHHHHHHHHHHHHH
T ss_pred ccHhhcCCCCHHHHHHH--HHcCCCcHHHHHhCCHHHHHHhh-CcCHHHHHHHHHHHHH
Confidence 36899999999999999 55689999999999988776543 5788877777776654
No 43
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=54.87 E-value=3.4 Score=47.68 Aligned_cols=23 Identities=43% Similarity=0.995 Sum_probs=18.8
Q ss_pred hhhhHhhhccCHHHHHhHHHhCC
Q psy12216 2 KLTKAYQALTDEESRRNFEKYGN 24 (646)
Q Consensus 2 ~ItKAYkaLTDe~~R~N~ekYGn 24 (646)
+|+.||+.|+|+..|..|..||+
T Consensus 66 ~i~~ay~~L~~~~~r~~yd~~~~ 88 (780)
T 3apo_A 66 KINRAYEVLKDEDLRKKYDKYGE 88 (780)
T ss_dssp --CTHHHHHHSHHHHHHHTTC--
T ss_pred HHHHHHHHHcChHHHHHHHhhcc
Confidence 68999999999999999999995
No 44
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=50.43 E-value=15 Score=30.41 Aligned_cols=56 Identities=14% Similarity=0.229 Sum_probs=42.2
Q ss_pred CCcccCCCCCHHHHHHHhhhccCCCCHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHccC
Q psy12216 239 NPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNM 298 (646)
Q Consensus 239 spLlQLPh~~~e~l~~le~~k~~i~tl~~L~~l~~~er~~LL~~ls~~q~~ev~~vl~~~ 298 (646)
.|+-+| .++......| ++.+|.|+.+|+.++.++... ++++..+-+.+|...+..+
T Consensus 16 ~~Ie~L-~LS~Ra~NcL--k~agI~Tv~dL~~~se~dLlk-i~n~G~kSl~EI~~~L~e~ 71 (79)
T 3gfk_B 16 MTIEEL-DLSVRSYNCL--KRAGINTVQELANKTEEDMMK-VRNLGRKSLEEVKAKLEEL 71 (79)
T ss_dssp CBGGGS-CCBHHHHHHH--HHTTCCBHHHHTTCCHHHHTT-STTCHHHHHHHHHHHHHHT
T ss_pred CcHHHh-CCCHHHHHHH--HHhCCCCHHHHHhCCHHHHHH-cCCCCHhHHHHHHHHHHHc
Confidence 344455 4677777777 456899999999999887665 3578888899998888764
No 45
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=47.74 E-value=31 Score=35.87 Aligned_cols=56 Identities=13% Similarity=0.158 Sum_probs=45.6
Q ss_pred CCcccCCCCCHHHHHHHhhhccCCCCHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHcc
Q psy12216 239 NPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGN 297 (646)
Q Consensus 239 spLlQLPh~~~e~l~~le~~k~~i~tl~~L~~l~~~er~~LL~~ls~~q~~ev~~vl~~ 297 (646)
.+|.+||++++..+++| .+.++.|+.+++..++.++..+. ++++.....++..+..
T Consensus 35 ~~l~~l~Gi~~~~~~kL--~~ag~~t~~~~~~~~~~~L~~~~-~~s~~~~~~~l~~~~~ 90 (349)
T 1pzn_A 35 RSIEDLPGVGPATAEKL--REAGYDTLEAIAVASPIELKEVA-GISEGTALKIIQAARK 90 (349)
T ss_dssp CCSSCCTTCCHHHHHHH--HTTTCCSHHHHHTCCHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccHHHcCCCCHHHHHHH--HHcCCCcHHHHHhCCHHHHHhhc-CCCHHHHHHHHHHHhh
Confidence 47899999999999999 55789999999999988887655 4787777777666644
No 46
>1coo_A RNA polymerase alpha subunit; transcription regulation, nucleotidyl transferase; NMR {Escherichia coli} SCOP: a.60.3.1 PDB: 2jzb_A
Probab=38.00 E-value=29 Score=29.82 Aligned_cols=55 Identities=16% Similarity=0.186 Sum_probs=40.3
Q ss_pred CcccCCCCCHHHHHHHhhhccCCCCHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHccC
Q psy12216 240 PLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNM 298 (646)
Q Consensus 240 pLlQLPh~~~e~l~~le~~k~~i~tl~~L~~l~~~er~~LL~~ls~~q~~ev~~vl~~~ 298 (646)
|+-+| .++......| ++.+|.|+.+|+.++.++... ++++..+-+.+|...+..+
T Consensus 25 ~Ie~L-~LSvRs~NcL--kragI~Tv~dL~~~se~dLlk-i~n~G~KSl~EI~~~L~~~ 79 (98)
T 1coo_A 25 PVDDL-ELTVRSANCL--KAEAIHYIGDLVQRTEVELLK-TPNLGKKSLTEIKDVLASR 79 (98)
T ss_dssp BGGGG-TCCTTTHHHH--HTTTCCBHHHHHTSCHHHHTT-STTCCHHHHHHHHHHHHHT
T ss_pred cHHHh-CCCHHHHHHH--HHcCCCcHHHHHhCCHHHHHh-cCCCCHHHHHHHHHHHHHc
Confidence 34444 2454445555 456899999999999887654 3579999999999999876
No 47
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=37.50 E-value=19 Score=35.42 Aligned_cols=35 Identities=20% Similarity=0.393 Sum_probs=29.9
Q ss_pred hhhhHhhhccCHHHHHhHHHhCCCCCCCccceeeccccc
Q psy12216 2 KLTKAYQALTDEESRRNFEKYGNPDGPGAMSFGIALPSY 40 (646)
Q Consensus 2 ~ItKAYkaLTDe~~R~N~ekYGnPDGpq~~s~GIALP~w 40 (646)
.|....++|.|+..++-+.+||-|+ .-+||-+|.-
T Consensus 5 ~i~~~L~~l~d~~~a~~m~~~g~~~----~~~GV~~P~l 39 (235)
T 1t06_A 5 TVMQELEALGKERTKKIYISNGAHE----PVFGVATGAM 39 (235)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHTCCS----SCCCCCGGGG
T ss_pred HHHHHHHHccCHHHHHHHHHhCCCC----ccCCCchHHH
Confidence 4778899999999999999999887 3578888865
No 48
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=31.83 E-value=36 Score=27.24 Aligned_cols=55 Identities=15% Similarity=0.084 Sum_probs=40.0
Q ss_pred CCCcccCCCCCHHHHHHHhhhccCCCCHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHc
Q psy12216 238 KNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLG 296 (646)
Q Consensus 238 ~spLlQLPh~~~e~l~~le~~k~~i~tl~~L~~l~~~er~~LL~~ls~~q~~ev~~vl~ 296 (646)
.+.|..+|++.+..++.|... ..++..+...+.++...+ .++++.....+..+++
T Consensus 23 ~~~L~~I~gIG~~~A~~Ll~~---fgsl~~l~~a~~eeL~~i-~GIG~~~a~~I~~~~~ 77 (78)
T 1kft_A 23 TSSLETIEGVGPKRRQMLLKY---MGGLQGLRNASVEEIAKV-PGISQGLAEKIFWSLK 77 (78)
T ss_dssp CCGGGGCTTCSSSHHHHHHHH---HSCHHHHHHCCHHHHTTS-SSTTSHHHHHHHHHHT
T ss_pred HHHHhcCCCCCHHHHHHHHHH---cCCHHHHHHCCHHHHHHC-CCCCHHHHHHHHHHHh
Confidence 467899999999888887542 346888888887766543 3567777777777654
No 49
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=30.39 E-value=75 Score=25.92 Aligned_cols=54 Identities=15% Similarity=0.170 Sum_probs=41.1
Q ss_pred CcccCCCCCHHHHHHHhhhccCCCCHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHcc
Q psy12216 240 PLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGN 297 (646)
Q Consensus 240 pLlQLPh~~~e~l~~le~~k~~i~tl~~L~~l~~~er~~LL~~ls~~q~~ev~~vl~~ 297 (646)
.|..+|++++..++.|.. ...++..++..+.++...+ .++++.....+..+++.
T Consensus 20 ~L~~IpgIG~~~A~~Ll~---~fgsl~~l~~a~~~eL~~i-~GIG~~~a~~I~~~l~~ 73 (89)
T 1z00_A 20 CLTTVKSVNKTDSQTLLT---TFGSLEQLIAASREDLALC-PGLGPQKARRLFDVLHE 73 (89)
T ss_dssp HHTTSSSCCHHHHHHHHH---HTCBHHHHHHCCHHHHHTS-TTCCHHHHHHHHHHHHS
T ss_pred HHHcCCCCCHHHHHHHHH---HCCCHHHHHhCCHHHHHhC-CCCCHHHHHHHHHHHHH
Confidence 367899999998888854 2347889998888776653 45788888888888754
No 50
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=30.17 E-value=26 Score=28.08 Aligned_cols=54 Identities=9% Similarity=0.130 Sum_probs=42.1
Q ss_pred cccCCCCCHHHHHHHhhhccCCCCHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHcc
Q psy12216 241 LLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGN 297 (646)
Q Consensus 241 LlQLPh~~~e~l~~le~~k~~i~tl~~L~~l~~~er~~LL~~ls~~q~~ev~~vl~~ 297 (646)
|.+.++++...+++| ...+..|++++...+.++...+ .++++....++...++.
T Consensus 8 f~~~lgI~e~~a~~L--~~~Gf~tve~vA~~~~~eL~~I-~G~dE~~a~~l~~~A~~ 61 (70)
T 1u9l_A 8 FTKYLDIDEDFATVL--VEEGFSTLEELAYVPMKELLEI-EGLDEPTVEALRERAKN 61 (70)
T ss_dssp HHHHHTCCHHHHHHH--HHTTCCCHHHHHHSCHHHHTTS-TTCCHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHH--HHcCcCcHHHHHcCCHHHHhhc-cCCCHHHHHHHHHHHHH
Confidence 345568999999999 4468899999999988776543 36899888888877764
No 51
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=29.48 E-value=44 Score=28.29 Aligned_cols=37 Identities=19% Similarity=0.187 Sum_probs=31.4
Q ss_pred CCCcccCCCCCHHHHHHHhhhccCCCCHHHHHcCCHHHH
Q psy12216 238 KNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEER 276 (646)
Q Consensus 238 ~spLlQLPh~~~e~l~~le~~k~~i~tl~~L~~l~~~er 276 (646)
.+.|..||.+++...+.| .+-+|.|+++|..+.+.+-
T Consensus 3 m~~L~dLPNig~~~e~~L--~~~GI~t~~~Lr~~Ga~~a 39 (93)
T 3mab_A 3 LANLSELPNIGKVLEQDL--IKAGIKTPVELKDVGSKEA 39 (93)
T ss_dssp CCCGGGSTTCCHHHHHHH--HHTTCCSHHHHHHHCHHHH
T ss_pred HHHHhhCCCCCHHHHHHH--HHcCCCCHHHHHhCCHHHH
Confidence 477999999999988888 5678999999998876653
No 52
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=27.86 E-value=13 Score=38.24 Aligned_cols=56 Identities=11% Similarity=0.127 Sum_probs=0.0
Q ss_pred CCcccCCCCCHHHHHHHhhhccCCCCHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHcc
Q psy12216 239 NPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGN 297 (646)
Q Consensus 239 spLlQLPh~~~e~l~~le~~k~~i~tl~~L~~l~~~er~~LL~~ls~~q~~ev~~vl~~ 297 (646)
.+|-+||++++..+++| ++.++.|+.+++..++.++.... ++++.....+++.+..
T Consensus 12 ~~~~~l~g~~~~~~~~l--~~~g~~t~~~~~~~~~~~l~~~~-g~s~~~~~~~~~~~~~ 67 (324)
T 2z43_A 12 KTINDLPGISQTVINKL--IEAGYSSLETLAVASPQDLSVAA-GIPLSTAQKIIKEARD 67 (324)
T ss_dssp -----------------------------------------------------------
T ss_pred ccHHHcCCCCHHHHHHH--HHcCCCcHHHHHcCCHHHHHHhh-CCCHHHHHHHHHHHHh
Confidence 47889999999999999 55689999999988877765543 4677666666665544
No 53
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=27.43 E-value=44 Score=28.49 Aligned_cols=51 Identities=10% Similarity=0.059 Sum_probs=37.5
Q ss_pred CCCcccCCCCCHHHHHHHhhhccCCCCHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHccC
Q psy12216 238 KNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNM 298 (646)
Q Consensus 238 ~spLlQLPh~~~e~l~~le~~k~~i~tl~~L~~l~~~er~~LL~~ls~~q~~ev~~vl~~~ 298 (646)
...|.+||+|++..++++.. ..+..++++|.+. .+++++.++.+...+..|
T Consensus 25 ~~eL~~lpGIG~~~A~~IV~-~GpF~s~edL~~V---------~Gig~~~~e~l~~~l~~f 75 (97)
T 3arc_U 25 IAAFIQYRGLYPTLAKLIVK-NAPYESVEDVLNI---------PGLTERQKQILRENLEHF 75 (97)
T ss_dssp GGGGGGSTTCTTHHHHHHHH-HCCCSSGGGGGGC---------TTCCHHHHHHHHHTGGGE
T ss_pred HHHHhHCCCCCHHHHHHHHH-cCCCCCHHHHHhc---------cCCCHHHHHHHHHHhcee
Confidence 35688999999999888865 3467788888754 257777777777666554
No 54
>1jei_A Emerin; membrane protein; NMR {Synthetic} SCOP: a.140.1.1 PDB: 2odc_I 2odg_C
Probab=25.76 E-value=23 Score=27.02 Aligned_cols=22 Identities=36% Similarity=0.730 Sum_probs=19.8
Q ss_pred hhhccCHHHHHhHHHhCCCCCC
Q psy12216 7 YQALTDEESRRNFEKYGNPDGP 28 (646)
Q Consensus 7 YkaLTDe~~R~N~ekYGnPDGp 28 (646)
+..|+|++.|....+||-+=||
T Consensus 3 v~~Lsd~eLr~~L~~~G~~~GP 24 (53)
T 1jei_A 3 YADLSDTELTTLLRRYNIPHGP 24 (53)
T ss_dssp TTTCCHHHHHHHHSSSCCSCCC
T ss_pred HHHcCHHHHHHHHHHhCCCCCC
Confidence 4679999999999999987788
No 55
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=25.38 E-value=82 Score=24.36 Aligned_cols=54 Identities=13% Similarity=0.150 Sum_probs=38.5
Q ss_pred CcccCCCCCHHHHHHHhhhccCCCCHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHcc
Q psy12216 240 PLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGN 297 (646)
Q Consensus 240 pLlQLPh~~~e~l~~le~~k~~i~tl~~L~~l~~~er~~LL~~ls~~q~~ev~~vl~~ 297 (646)
.|..+|+++...++.|.. ...++..++..+.++... +.++++.....+..++..
T Consensus 15 ~L~~i~giG~~~a~~Ll~---~fgs~~~l~~a~~~~L~~-i~Gig~~~a~~i~~~~~~ 68 (75)
T 1x2i_A 15 IVEGLPHVSATLARRLLK---HFGSVERVFTASVAELMK-VEGIGEKIAKEIRRVITA 68 (75)
T ss_dssp HHTTSTTCCHHHHHHHHH---HHCSHHHHHHCCHHHHTT-STTCCHHHHHHHHHHHHS
T ss_pred HHcCCCCCCHHHHHHHHH---HcCCHHHHHhCCHHHHhc-CCCCCHHHHHHHHHHHhC
Confidence 377899999988888754 134688888887766543 235788888888777643
No 56
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=24.37 E-value=84 Score=25.82 Aligned_cols=52 Identities=15% Similarity=0.203 Sum_probs=38.5
Q ss_pred cccCCCCCHHHHHHHhhhccCCCCHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHc
Q psy12216 241 LLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLG 296 (646)
Q Consensus 241 LlQLPh~~~e~l~~le~~k~~i~tl~~L~~l~~~er~~LL~~ls~~q~~ev~~vl~ 296 (646)
|..+|++++..++.|... ..++..++..+.++...+ .++++.....+..+++
T Consensus 34 L~~IpgIG~~~A~~Ll~~---fgs~~~l~~as~~eL~~i-~GIG~~~a~~I~~~l~ 85 (91)
T 2a1j_B 34 LTTVKSVNKTDSQTLLTT---FGSLEQLIAASREDLALC-PGLGPQKARRLFDVLH 85 (91)
T ss_dssp HTTSTTCCHHHHHHHHHH---HSSHHHHHSCCHHHHHTS-SSCCSHHHHHHHHHHH
T ss_pred HHcCCCCCHHHHHHHHHH---CCCHHHHHhCCHHHHHhC-CCCCHHHHHHHHHHHh
Confidence 678999999888887542 346888988887776543 3577888888887764
No 57
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=23.37 E-value=1.3e+02 Score=31.12 Aligned_cols=61 Identities=11% Similarity=-0.030 Sum_probs=47.8
Q ss_pred CCCcccCCCCCHHHHHHHhhhccCCCCHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHccCCceeE
Q psy12216 238 KNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMPYVDL 303 (646)
Q Consensus 238 ~spLlQLPh~~~e~l~~le~~k~~i~tl~~L~~l~~~er~~LL~~ls~~q~~ev~~vl~~~P~L~I 303 (646)
..|+.-||++.....++| .+.++.|+.||..++.......+ +...+..+...++-...-.|
T Consensus 177 ~lpv~~l~GiG~~~~~~L--~~~GI~Ti~dL~~~~~~~L~~~f---G~~~g~~l~~~a~G~d~~~v 237 (356)
T 4dez_A 177 DRPPDALWGVGPKTTKKL--AAMGITTVADLAVTDPSVLTTAF---GPSTGLWLLLLAKGGGDTEV 237 (356)
T ss_dssp TSCGGGSTTCCHHHHHHH--HHTTCCSHHHHHTSCHHHHHHHH---CHHHHHHHHHHHTTCCCCCC
T ss_pred cCcHHHHcCCchhHHHHH--HHcCCCeecccccCCHHHHHHHh---CChHHHHHHHHHcCCCcccc
Confidence 368999999999999999 56789999999999988777655 45566777788776554333
No 58
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=22.17 E-value=58 Score=27.53 Aligned_cols=36 Identities=19% Similarity=0.197 Sum_probs=30.0
Q ss_pred CCCcccCCCCCHHHHHHHhhhccCCCCHHHHHcCCHHH
Q psy12216 238 KNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEE 275 (646)
Q Consensus 238 ~spLlQLPh~~~e~l~~le~~k~~i~tl~~L~~l~~~e 275 (646)
...|..||.+++...+.| .+-+|.|+++|..+.+.+
T Consensus 3 ~~~L~~LPNiG~~~e~~L--~~vGI~s~e~L~~~Ga~~ 38 (93)
T 3bqs_A 3 LANLSELPNIGKVLEQDL--IKAGIKTPVELKDVGSKE 38 (93)
T ss_dssp CSCGGGSTTCCHHHHHHH--HHTTCCSHHHHHHHHHHH
T ss_pred hHHhhcCCCCCHHHHHHH--HHcCCCCHHHHHhCCHHH
Confidence 356899999999988888 567899999999876554
No 59
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=21.38 E-value=21 Score=31.43 Aligned_cols=58 Identities=12% Similarity=0.242 Sum_probs=47.9
Q ss_pred CCcccCC--CCCHHHHHHHhhhccCCCCHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHccCC
Q psy12216 239 NPLLQLP--YVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMP 299 (646)
Q Consensus 239 spLlQLP--h~~~e~l~~le~~k~~i~tl~~L~~l~~~er~~LL~~ls~~q~~ev~~vl~~~P 299 (646)
.|+..|| ++++..+++| ...++.|+.++...++.++..+ .++++.....|+..++.+-
T Consensus 23 ~~I~~L~~~GIg~~~i~kL--~eAG~~Tve~va~a~~~eL~~i-~GIse~ka~kIi~aA~kl~ 82 (114)
T 1b22_A 23 QPISRLEQCGINANDVKKL--EEAGFHTVEAVAYAPKKELINI-KGISEAKADKILAEAAKLV 82 (114)
T ss_dssp CCHHHHHHTTCSHHHHHHH--HTTCCSSGGGBTSSBHHHHHTT-TTCSTTHHHHHHHHHHHHS
T ss_pred ccHHHHHhcCCCHHHHHHH--HHcCcCcHHHHHhCCHHHHHHc-cCCCHHHHHHHHHHHHHHc
Confidence 4777788 8999999999 5568999999999888777654 3689999999999998864
Done!