RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12216
(646 letters)
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA
helicase, rnpase, RNA unwindase, molecular model mRNA
splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A*
3hib_A
Length = 328
Score = 116 bits (292), Expect = 6e-29
Identities = 56/255 (21%), Positives = 107/255 (41%), Gaps = 32/255 (12%)
Query: 81 VLLETINFYYAFFQITPHMALKRVLMILGASLEFDRRFNSEIIERPSDEIEVPQLIRQIP 140
V TI + + ++ LK +L +L ++EF+ + R D + +L +++P
Sbjct: 23 VSFFTIQSFVS--SLSNTSTLKNMLYVLSTAVEFE-----SVPLRKGDRALLVKLSKRLP 75
Query: 141 NLGEKNRERPLYHKYSIKARALIYAHLSNMQLTSETLEADRMYIVKKCPYLLQEMVTCIS 200
+ E S K L+ A+ S ++L + + D I++K L+ +V +S
Sbjct: 76 L---RFPEHTSSGSVSFKVFLLLQAYFSRLELPVD-FQNDLKDILEKVVPLINVVVDILS 131
Query: 201 QLILLAYAQRVPRLIHIETLENVMKLCPMIVQGMWDFKNPLLQLPYVTDDHLKHFICKKR 260
L M L M++QG+WD NPL Q+P+ + L+ CK+
Sbjct: 132 ANGYL-------------NATTAMDLAQMLIQGVWDVDNPLRQIPHFNNKILEK--CKEI 176
Query: 261 YIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMPYVDLHVQPEVIDDEATTEYTA 320
++++ +++EER ++ + D Q + + + N P V+L D +
Sbjct: 177 NVETVYDIMALEDEERDEILT-LTDSQLAQVAAFVNNYPNVELTYSLNNSDS-----LIS 230
Query: 321 GAIITVTCTLMRKPM 335
G +T L R
Sbjct: 231 GVKQKITIQLTRDVE 245
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics,
translocase, northeast structural genomics consortium,
PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Length = 339
Score = 113 bits (284), Expect = 1e-27
Identities = 61/253 (24%), Positives = 119/253 (47%), Gaps = 32/253 (12%)
Query: 81 VLLETINFYYAFFQITPHMALKRVLMILGASLEFDRRFNSEIIERPSDEIEVPQLIRQIP 140
+ TI + + ++ ++ I+ + E++ I R ++ + QL +++P
Sbjct: 27 INYTTIELF--SMSLNAKTKVRGLIEIISNAAEYE-----NIPIRHHEDNLLRQLAQKVP 79
Query: 141 NLGEKNRERPLYHKYSIKARALIYAHLSNMQLTSETLEADRMYIVKKCPYLLQEMVTCIS 200
+ P ++ +K L+ AHLS MQL++E L++D I+ K L+Q V +S
Sbjct: 80 H----KLNNPKFNDPHVKTNLLLQAHLSRMQLSAE-LQSDTEEILSKAIRLIQACVDVLS 134
Query: 201 QLILLAYAQRVPRLIHIETLENVMKLCPMIVQGMWDFKNPLLQLPYVTDDHLKHFICKKR 260
L+ A M+L M+ Q MW + L QLP+ T +H+K C +
Sbjct: 135 SNGWLSPA------------LAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKR--CTDK 180
Query: 261 YIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMPYVDLHVQPEVIDDEATTEYTA 320
++S+ +M++EER ++++ + D Q +D+ + P ++L EV+D + +
Sbjct: 181 GVESVFDIMEMEDEERNALLQ-LTDSQIADVARFCNRYPNIELSY--EVVDKD---SIRS 234
Query: 321 GAIITVTCTLMRK 333
G + V L R+
Sbjct: 235 GGPVVVLVQLERE 247
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding,
hydrolase, nucleotide- binding; 2.00A {Pyrococcus
furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Length = 720
Score = 52.9 bits (127), Expect = 2e-07
Identities = 29/242 (11%), Positives = 69/242 (28%), Gaps = 28/242 (11%)
Query: 83 LETINFYYAFFQ-ITPHMALKRVLMILGASLEFD--RRFNSEIIERPSDEIEVPQLIR-Q 138
T + + + + ++ + + E + E +
Sbjct: 493 PYTAKMFKDKMEEVVKDPNPIGIFHLISLTPDITPFNYSKREFERLEEEYYEFKDRLYFD 552
Query: 139 IPNLGEKNRERPLYHKYSIKARALIYAHLSNMQLTS-----ETLEADRMYIVKKCPYLLQ 193
P + + + K ++ A ++ + D IV+ +L+
Sbjct: 553 DPYISGYDPYLERKFFRAFKTALVLLAWINEVPEGEIVEKYSVEPGDIYRIVETAEWLVY 612
Query: 194 EMVTCISQLILLAYAQRVPRLIHIETLENVMKLCPMIVQGMWDFKNPLLQLPYVTDDHLK 253
+ L + + L + G+ + PL+QLP V +
Sbjct: 613 SLKEIAKVLGAYEIV------------DYLETLRVRVKYGIREELIPLMQLPLVGRRRAR 660
Query: 254 HFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMPYVDLHVQP--EVID 311
+S++ +Q + EE + + + K LG V + +P +D
Sbjct: 661 ALY--NSGFRSIEDISQARPEELLKIEGI-GVKTVEAIFKFLG--KNVKISEKPRKSTLD 715
Query: 312 DE 313
Sbjct: 716 YF 717
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.4 bits (122), Expect = 9e-07
Identities = 51/350 (14%), Positives = 106/350 (30%), Gaps = 110/350 (31%)
Query: 3 LTKAYQALTDEESRRNFEKYGNPDGPGAMSFGIALPSYIVEKENSVWVLGLYALVFMVAL 62
L LT +E + KY + LP ++
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLD------CRPQ-DLPREVLT-----------------TN 326
Query: 63 PTAVGMWWYKSIRYTGDKVLLETINFYYAFFQITPHMALKRVLMILGASL------EFDR 116
P + + +SIR L T + + H+ ++ I+ +SL E+ +
Sbjct: 327 PRRLSIIA-ESIR-----DGLATWDNW-------KHVNCDKLTTIIESSLNVLEPAEYRK 373
Query: 117 RFNS---------------EIIERPSDEIEVPQLIRQIPN--LGEKNRERPLYHKYSI-- 157
F+ +I + +V ++ ++ L EK + SI
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433
Query: 158 ----KA-------RALI--YAHLSNMQLTSETLEADRMYIVKKCPYLLQ-----EMVTCI 199
K R+++ Y Y + L+ E +T
Sbjct: 434 ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF 493
Query: 200 SQLIL-LAYAQRVPRLIHIETLENVMKLCPMIVQGMWDFKNPLLQL----PYVTDDHLKH 254
+ L + ++ ++ H T N N L QL PY+ D+ K+
Sbjct: 494 RMVFLDFRFLEQ--KIRHDSTAWN----------ASGSILNTLQQLKFYKPYICDNDPKY 541
Query: 255 FICKKRYIKSLQQFAQMKNE-----ERRSVVK--FMNDEQ--YSDMLKVL 295
+R + ++ F E + +++ M +++ + + K +
Sbjct: 542 ----ERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587
Score = 46.8 bits (110), Expect = 2e-05
Identities = 52/425 (12%), Positives = 127/425 (29%), Gaps = 122/425 (28%)
Query: 104 VLMILGASLEFDRRFNSEIIERPSDEIEVPQLIRQIPNLGEKNRER-----PLYHKYSIK 158
V + L + +F ++ E P ++ + + + R+R ++ KY++
Sbjct: 79 VQKFVEEVLRINYKF---LMSPIKTEQRQPSMMTR---MYIEQRDRLYNDNQVFAKYNVS 132
Query: 159 ARALIYAHLSN--MQLTSETLEADRMYIVKKCPYLLQEMV----TCISQLILLAYA--QR 210
R Y L ++L ++ + ++ T ++ + L+Y +
Sbjct: 133 -RLQPYLKLRQALLELRPAK------NVL------IDGVLGSGKTWVALDVCLSYKVQCK 179
Query: 211 VPRLIH----------IETLENVMKLCPMIVQGMWDFKNPLLQLPYVTDD---HLKHFIC 257
+ I LE + KL I + + L+ +
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 258 KKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMPYVDLHVQPEVIDDEATTE 317
K Y L +V + + Q + +L + + TT
Sbjct: 240 SKPYENCL-------------LV--LLNVQNAKAWNAF------NLSCKILL-----TTR 273
Query: 318 YTAGAIITVTCTLMRKPMSVLFGDDTIKVQFLEPSKEGEG------EIEEEEKPN--GTI 369
+ VT L + + D L P E + + ++ P T
Sbjct: 274 F-----KQVTDFLSAATTTHISLDHHSMT--LTPD-EVKSLLLKYLDCRPQDLPREVLTT 325
Query: 370 TPVLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVK-FMNDEQYSDMLKVLGNMP 428
P + + ++ + + + ++ ++++ +N + ++ K+
Sbjct: 326 NPRRLSIIAESIRDGLAT------WDNWKHVNCDKLTTIIESSLNVLEPAEYRKM----- 374
Query: 429 YVDLHVQPEVIDDEATTEYTAGAIITPEVI----DDEATTEYTAGAIITVTCTLMRKPMS 484
+ L V P A I ++ D ++ ++ V L + S
Sbjct: 375 FDRLSVFPP------------SAHIPTILLSLIWFDVIKSD-----VMVVVNKLHKY--S 415
Query: 485 VLFGD 489
++
Sbjct: 416 LVEKQ 420
Score = 34.4 bits (78), Expect = 0.13
Identities = 37/281 (13%), Positives = 82/281 (29%), Gaps = 60/281 (21%)
Query: 358 EIEEEEKPNGTITPVLPYVTDDHLKHFICK--KRYIKSLQQFAQMKNEERRSVVKFMNDE 415
E E + I V D + +F CK + KS+ + EE ++ +
Sbjct: 10 ETGEHQYQYKDILSVF---EDAFVDNFDCKDVQDMPKSI-----LSKEEIDHIIMSKDAV 61
Query: 416 QYSDMLKVLGNMPYVDLHVQPE-----VIDDEATTEYTAGAIITPEVIDDEATTEYTAGA 470
+ L + L + E +++ Y + + TE +
Sbjct: 62 SGTLRL-------FWTLLSKQEEMVQKFVEEVLRINY--------KFLMSPIKTEQRQPS 106
Query: 471 IITVTCTLMRKPMSVLFGDDTIKVQFLEPSKEGEGEIEE---EEKPNGTIT--------- 518
++T R L+ D+ + ++ + ++ + E +P +
Sbjct: 107 MMTRMYIEQRDR---LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK 163
Query: 519 -----PVVNKEKQQTHRP---VWMKNKKGGKKKKFTKNKHDKKSSGQKKITNTVEQTEAP 570
V K Q W+ K + + T+ + +
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 571 ADVAKVEKKDTPEESKD-VSSESEEES--DLSDVENDEVVD 608
K+ E + + S+ E L +V+N + +
Sbjct: 224 ----KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.4 bits (107), Expect = 5e-05
Identities = 96/612 (15%), Positives = 164/612 (26%), Gaps = 263/612 (42%)
Query: 32 SFGIALP----SYIVEKENSVWVLGLYA--LVFMVAL--PTAVGMWWYKSIRYTGDKVLL 83
F LP + + E + L L ++ +L P+ VG D+VL
Sbjct: 36 QFNKILPEPTEGFAADDEPTT-PAELVGKFLGYVSSLVEPSKVG---------QFDQVLN 85
Query: 84 ETIN-FYYAFFQ---ITPHMALKRVLMILGASLEFDRR-----FNS-EIIERPSDEIEVP 133
+ F + + I H ++L +L + + + +RP D+
Sbjct: 86 LCLTEFENCYLEGNDI--HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNS 143
Query: 134 QLIRQIP----NL-----GEKNRE------RPLYHKYSIKARALIYAHLSNMQ-LTSETL 177
L R + L G+ N + R LY Y + LI + L TL
Sbjct: 144 ALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTL 203
Query: 178 EADRMYIVKKCPYLLQEMVTCISQLILLAYAQRVPRLIHIETLENVMKLCPMIVQGMWDF 237
+A++++ + ++I W
Sbjct: 204 DAEKVF----------------------------TQGLNILE---------------W-- 218
Query: 238 KNPLLQLPYVT--DDHLKH------FICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYS 289
L+ P T D+L I + Q A Y
Sbjct: 219 ----LENPSNTPDKDYLLSIPISCPLIG-------VIQLA-----------------HYV 250
Query: 290 DMLKVLGNMPYVDLHVQPEVIDDEATTEYTAGAIITVTCT-----------LMRKPMSVL 338
K+LG P E+ + ++T +RK ++VL
Sbjct: 251 VTAKLLGFTP-------GELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVL 303
Query: 339 F-----GDDTIKVQFLEPS------KEGEG--------------EIEEE-EKPNGTITPV 372
F + L PS + EG ++++ K N
Sbjct: 304 FFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSH---- 359
Query: 373 LPYVTDDHL--------KHFIC---------------KKRYIKSLQQFAQMKNEERRSVV 409
LP + K+ + K + L Q +++ ER+ +
Sbjct: 360 LP--AGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQ-SRIPFSERK--L 414
Query: 410 KFMNDEQYSDMLKVLGNMPYVDLHVQPEVIDDEATTEYTAGAIITPEVIDD--EATTEYT 467
KF N ++ L V P+ H + A + + D + +
Sbjct: 415 KFSN--RF---LPV--ASPF---H-----------SHLLVPA--SDLINKDLVKNNVSFN 451
Query: 468 AGAI-ITV--TCTLMRKPMSVLFGDDTIKVQFLEPSKEGEGEIEEEEKPNGTITPVVNKE 524
A I I V T G D + G I E I +
Sbjct: 452 AKDIQIPVYDTFD----------GSDL---------RVLSGSISER------IVDCI--- 483
Query: 525 KQQTHRPV-WMK 535
PV W
Sbjct: 484 ---IRLPVKWET 492
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 38.6 bits (89), Expect = 0.002
Identities = 14/80 (17%), Positives = 32/80 (40%), Gaps = 11/80 (13%)
Query: 560 ITNTVEQTEAPADVAK--------VEKKDTPEESKDVSSESEEESDLSDVENDEVVDKKE 611
I T+ P + K +++ D + + + + DL + N ++ E
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEW-NQRQSEQVE 132
Query: 612 KNEDSNNKSEES--SDDDDD 629
KN+ +N ++++ D D
Sbjct: 133 KNKINNRIADKAFYQQPDAD 152
Score = 30.1 bits (67), Expect = 1.6
Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 12/66 (18%)
Query: 584 ESKDVSSESE------EESDLSDVENDEVVDKKEKNEDSNNKSEESSDDDDDW-EKYQTG 636
++ ++ E E EE E D K + E E++ D ++W ++
Sbjct: 76 QADRLTQEPESIRKWREEQRKRLQELDAA-SKVMEQE----WREKAKKDLEEWNQRQSEQ 130
Query: 637 LNKRDK 642
+ K
Sbjct: 131 VEKNKI 136
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal
helicase, DNA repair,, DNA binding protein/DNA complex;
3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2
c.37.1.19 c.37.1.19 PDB: 2p6u_A
Length = 702
Score = 38.6 bits (90), Expect = 0.007
Identities = 19/198 (9%), Positives = 60/198 (30%), Gaps = 22/198 (11%)
Query: 81 VLLETINFYYAFFQITPHMALKRVLMILGASLEFDR---RFNSEIIERPSDEIEVPQLIR 137
+ T ++ ++ L ++ + + +R R +E + + + +
Sbjct: 488 IDPLTGFIFHDVLS-RMELSDIGALHLICRTPDMERLTVRKTDSWVEEEAFRL--RKELS 544
Query: 138 QIPNLGEKNRERPLYHKYSIKARALIYAHLSNMQLTSETLEADRMYIVKKCPYLLQEMVT 197
P+ + L +K + + I K ++
Sbjct: 545 YYPSDFSVEYDWFLSE---VKTALCLKDWIEEKDEDE---------ICAKYGIAPGDLRR 592
Query: 198 CISQLILLAYAQRVPRLIHIETLENVMKLCPMIVQGMWDFKNPLLQLPYVTDDHLKHFIC 257
+ L+ A + R+ +V L I G+ + L+++ ++ +
Sbjct: 593 IVETAEWLSNA--MNRIAEEVGNTSVSGLTERIKHGVKEELLELVRIRHIGRVRAR--KL 648
Query: 258 KKRYIKSLQQFAQMKNEE 275
I++ + + + +
Sbjct: 649 YNAGIRNAEDIVRHREKV 666
>3gdb_A Endo-D, putative uncharacterized protein SPR0440;
alpha-beta-barrels, cell WALL, peptidoglycan-anchor,
secreted, hydrolase; HET: PGE; 1.87A {Streptococcus
pneumoniae} PDB: 2xqx_A
Length = 937
Score = 33.0 bits (74), Expect = 0.35
Identities = 19/135 (14%), Positives = 46/135 (34%)
Query: 498 EPSKEGEGEIEEEEKPNGTITPVVNKEKQQTHRPVWMKNKKGGKKKKFTKNKHDKKSSGQ 557
S E E E +K N NK ++ + + T + S+ +
Sbjct: 36 LVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASNEAATTETAEAASAAK 95
Query: 558 KKITNTVEQTEAPADVAKVEKKDTPEESKDVSSESEEESDLSDVENDEVVDKKEKNEDSN 617
+ + E P+ AK + E + +++ +E ++ E + + +++
Sbjct: 96 PEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAEANKTEKEVQPDVPKNTE 155
Query: 618 NKSEESSDDDDDWEK 632
+ + WE+
Sbjct: 156 KTLKPKEIKFNSWEE 170
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ
domain, endoplasmic reticulum, oxidor; 1.84A {Mus
musculus}
Length = 210
Score = 31.0 bits (70), Expect = 0.82
Identities = 10/23 (43%), Positives = 18/23 (78%)
Query: 1 MKLTKAYQALTDEESRRNFEKYG 23
+K+ +AY+ L DE+ R+ ++KYG
Sbjct: 46 LKINRAYEVLKDEDLRKKYDKYG 68
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase
regulat protein complex; 3.10A {Simian virus 40} PDB:
2pkg_C
Length = 174
Score = 30.6 bits (69), Expect = 0.94
Identities = 5/40 (12%), Positives = 11/40 (27%)
Query: 1 MKLTKAYQALTDEESRRNFEKYGNPDGPGAMSFGIALPSY 40
K+ Y+ + D + +G + P
Sbjct: 53 KKMNTLYKKMEDGVKYAHQPDFGGFWDATEVFASSLNPGV 92
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis
lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A*
1u0y_A* 1yt2_A*
Length = 269
Score = 30.6 bits (70), Expect = 1.3
Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 576 VEKKDTPEESKDVSSESEEESDLSDVENDEVVDKKEKNEDSNNKSEESSDDDDDWE 631
K +T EE + ++EE ++D+ +E+ E+ K+++ DWE
Sbjct: 215 SSKTETVEEPMEEEEAAKEE----KEDSDDEAAVEEEEEEKKPKTKKVEKTVWDWE 266
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A
{Thermus thermophilus} PDB: 2yvx_A
Length = 473
Score = 29.9 bits (68), Expect = 3.0
Identities = 13/84 (15%), Positives = 27/84 (32%), Gaps = 21/84 (25%)
Query: 397 FAQMKNEERRSVVKFMNDEQYSDMLK---------VLGNMPYVDLHVQPEVID----DEA 443
+ + EE+ +K + + ++L+ L + D + D
Sbjct: 84 LSHLSPEEQAEYLKTLPPWRLREILEELSLDDLADALQAVRKEDPAYFQRLKDLLDPRTR 143
Query: 444 TT--------EYTAGAIITPEVID 459
E AG ++TPE +
Sbjct: 144 AEVEALARYEEDEAGGLMTPEYVA 167
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold,
alpha/beta structure, rossman 6-hydroxylated FAD,
oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A
{Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1
PDB: 1naa_A*
Length = 546
Score = 29.5 bits (67), Expect = 3.6
Identities = 10/38 (26%), Positives = 14/38 (36%)
Query: 299 PYVDLHVQPEVIDDEATTEYTAGAIITVTCTLMRKPMS 336
Y V+P ++ Y A I T+T L S
Sbjct: 370 RYAQGTVRPGAASVNSSLPYNASQIFTITVYLSTGIQS 407
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor
protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Length = 114
Score = 27.9 bits (62), Expect = 4.2
Identities = 4/33 (12%), Positives = 10/33 (30%)
Query: 2 KLTKAYQALTDEESRRNFEKYGNPDGPGAMSFG 34
K+ Y+ + D + +G +
Sbjct: 51 KMNTLYKKMEDGVKYAHQPDFGGFWDATEIPTY 83
>2kwb_A TCTP, translationally-controlled tumor protein homolog; structural
genomics, northeast structural genomics consortiu PSI-2;
NMR {Caenorhabditis elegans} PDB: 2loy_A
Length = 189
Score = 28.8 bits (64), Expect = 4.5
Identities = 21/144 (14%), Positives = 46/144 (31%), Gaps = 18/144 (12%)
Query: 300 YVDLHVQPEVIDDEATTEYTAGAIITVTCTLMRKPMSVLFGDDTIKVQFLEPSKEGEGEI 359
Y D+ E+ D + + V+ + I + PS E E
Sbjct: 4 YKDIFTDDELSSDSFPMKLVDDLVYEFKGKH------VVRKEGEIVLAGSNPSAEEGAED 57
Query: 360 EEEEKPNGTI---------TPVLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVK 410
+ ++ + Y K +I K+++K++ + N ++ V
Sbjct: 58 DGSDEHVERGIDIVLNHKLVEMNCYEDASMFKAYI--KKFMKNVIDHMEKNNRDKADVDA 115
Query: 411 FMNDEQYSDMLKVLGNMPYVDLHV 434
F Q ++ +L + +L
Sbjct: 116 FKKKIQ-GWVVSLLAKDRFKNLAF 138
>2fhe_A GST, glutathione S-transferase; transferase-substrate complex; HET:
GSH; 2.30A {Fasciola hepatica} SCOP: a.45.1.1 c.47.1.5
PDB: 2wrt_A 1fhe_A*
Length = 216
Score = 28.6 bits (64), Expect = 5.3
Identities = 5/43 (11%), Positives = 14/43 (32%)
Query: 229 MIVQGMWDFKNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQM 271
MI D + + ++ Y K +++ ++
Sbjct: 93 MIEGAAVDLRQGISRISYQPKFEQLKEGYLKDLPTTMKMWSDF 135
>3omb_A Extracellular solute-binding protein, family 1; PSI-2, midwest
center for structural genomics, protein struc
initiative, MCSG; 2.10A {Bifidobacterium longum subsp}
Length = 535
Score = 29.1 bits (65), Expect = 5.5
Identities = 16/144 (11%), Positives = 41/144 (28%), Gaps = 10/144 (6%)
Query: 504 EGE-IEEEEKPNGTITPVVNKEKQQTHRPVWMKNKKGGKKKKFTKNKHDKKSSGQKKITN 562
G+ I + + T+ + ++ + G K D + ++
Sbjct: 387 FGKAITKTGEHEYTVDNDKLSQLTGDNQYPGLSELLVGWIPDEATIKGDTHADELIEVNK 446
Query: 563 TVEQTEAPADVAKVEKKDTPEESKDVSSESEEESDLSDVENDEVVDKKEKNEDSNNKSEE 622
E+ + D K D S++ + + + + + K
Sbjct: 447 VYEEQRSHFDPVKDYIPDYVNMDNMDPSDATKLNTNNAEIFNTTMQKT-------ATWMS 499
Query: 623 SSDDDDDWEKYQTGLNKR--DKYL 644
D++W+ Y L+ +
Sbjct: 500 KGGIDEEWDAYCKQLDSIGLQEST 523
>3gtu_B Glutathione S-transferase; conjugation, detoxification, cytosolic,
heterodimer; 2.80A {Homo sapiens} SCOP: a.45.1.1
c.47.1.5
Length = 224
Score = 28.6 bits (64), Expect = 5.7
Identities = 10/46 (21%), Positives = 20/46 (43%)
Query: 229 MIVQGMWDFKNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNE 274
+I + DF+ L++L Y +D + L+QF+ +
Sbjct: 102 IIENQVMDFRTQLIRLCYSSDHEKLKPQYLEELPGQLKQFSMFLGK 147
>1rm1_C Transcription initiation factor IIA large chain; yeast TFIIA, TBP
protein, ATA-box DNA, transcription/DNA complex; 2.50A
{Saccharomyces cerevisiae}
Length = 286
Score = 28.7 bits (62), Expect = 6.5
Identities = 13/119 (10%), Positives = 37/119 (31%)
Query: 513 PNGTITPVVNKEKQQTHRPVWMKNKKGGKKKKFTKNKHDKKSSGQKKITNTVEQTEAPAD 572
+G N + + + G ++ + + ++T +
Sbjct: 111 HSGETNINTNTVEATNNSGATLNTNTSGNTNADVTSQPKIEVKPEIELTINNANITTVEN 170
Query: 573 VAKVEKKDTPEESKDVSSESEEESDLSDVENDEVVDKKEKNEDSNNKSEESSDDDDDWE 631
+ +K EE ++ ++ +E + + + +K ++ DD DD
Sbjct: 171 IDDESEKKDDEEKEEDVEKTRKEKEQIEQVKLQAKKEKRSALLDTDEVGSELDDSDDDY 229
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein;
2.30A {Thermus thermophilus} PDB: 2yvz_A
Length = 278
Score = 28.3 bits (64), Expect = 6.9
Identities = 13/84 (15%), Positives = 27/84 (32%), Gaps = 21/84 (25%)
Query: 397 FAQMKNEERRSVVKFMNDEQYSDMLK---------VLGNMPYVDLHVQPEVID----DEA 443
+ + EE+ +K + + ++L+ L + D + D
Sbjct: 64 LSHLSPEEQAEYLKTLPPWRLREILEELSLDDLADALQAVRKEDPAYFQRLKDLLDPRTR 123
Query: 444 TT--------EYTAGAIITPEVID 459
E AG ++TPE +
Sbjct: 124 AEVEALARYEEDEAGGLMTPEYVA 147
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR
{Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Length = 103
Score = 27.2 bits (61), Expect = 6.9
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 2 KLTKAYQALTDEESRRNFEKYGNPDGPGAMSFG 34
++ +AY+ LTD + R +++YG+ G
Sbjct: 48 EIKEAYEVLTDSQKRAAYDQYGHAAFEQGGMGG 80
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 112
Score = 27.0 bits (60), Expect = 7.1
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 2 KLTKAYQALTDEESRRNFEKYG----NPDGPGAMSFG 34
KL KA + LT+EESR ++ + + +
Sbjct: 65 KLQKAKEILTNEESRARYDHWRRSQMSMPFQQWEALN 101
>2xzm_L 40S ribosomal protein S12; ribosome, translation; 3.93A
{Tetrahymena thermophila} PDB: 2xzn_L 3j0o_L 3j0l_L
3j0p_L 3j0q_L 3iz6_L 3jyv_L* 1s1h_L*
Length = 142
Score = 27.7 bits (61), Expect = 7.3
Identities = 9/68 (13%), Positives = 20/68 (29%), Gaps = 3/68 (4%)
Query: 512 KPNGTITPVVNKEKQQTHRPVWMKNKKGGKKKKFTKNKHDKKSSGQKKITNTVEQTEAPA 571
KP G ++ R W + K+ ++ ++ + K T +
Sbjct: 5 KPRGIRAGRKLARHRKDQR--W-ADNDFNKRLLGSRWRNPFMGASHAKGLVTEKIGIESK 61
Query: 572 DVAKVEKK 579
+K
Sbjct: 62 QPNSAVRK 69
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain,
all helix protein, chaperone, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 27.0 bits (60), Expect = 7.4
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 4/35 (11%)
Query: 4 TKAYQALTDEESRRNFEKYG----NPDGPGAMSFG 34
++AY L RR +++ + GPG+
Sbjct: 64 SQAYVVLGSATLRRKYDRGLLSDEDLRGPGSGPSS 98
>3iz5_T 60S ribosomal protein L19 (L19E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_T
Length = 209
Score = 27.0 bits (59), Expect = 7.5
Identities = 5/79 (6%), Positives = 15/79 (18%)
Query: 551 DKKSSGQKKITNTVEQTEAPADVAKVEKKDTPEESKDVSSESEEESDLSDVENDEVVDKK 610
D + + N+ + + +K S+ + + E
Sbjct: 25 DPNEVNEISMANSRQNIRKLVKDGFIIRKPQKIHSRSRARRAHEAKQKGRHSGYGKRRGT 84
Query: 611 EKNEDSNNKSEESSDDDDD 629
+
Sbjct: 85 REARLPTKILWMRRMRVLR 103
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon,
chaperone; NMR {Homo sapiens}
Length = 99
Score = 26.9 bits (60), Expect = 8.3
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 6/43 (13%)
Query: 4 TKAYQALTDEESRRNFEKYG------NPDGPGAMSFGIALPSY 40
+AY+ L+D+ R +++YG GP G P
Sbjct: 50 AEAYEVLSDKHKREIYDRYGREGLTGTGTGPSRAEAGSGGPGL 92
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 109
Score = 27.0 bits (60), Expect = 9.0
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 4 TKAYQALTDEESRRNFEKYGNPDGPGAMSFG 34
A+ LTD R ++KYG+ A FG
Sbjct: 64 NNAHAILTDATKRNIYDKYGSLGLYVAEQFG 94
>2zjr_S 50S ribosomal protein L25; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.53.1.1 PDB: 1njm_T* 1nwx_T* 1njp_T*
1xbp_T* 2zjp_S* 2zjq_S 1nwy_T 3cf5_S* 3dll_S* 3pio_S*
3pip_S* 1nkw_T 1sm1_T* 1yl3_V 2b66_Z 2b9n_Z 2b9p_Z
1pnu_T 1pny_T 1vor_W ...
Length = 237
Score = 27.8 bits (62), Expect = 9.0
Identities = 7/59 (11%), Positives = 18/59 (30%), Gaps = 2/59 (3%)
Query: 574 AKVEKKDTPEESKDVSSESEEESDLSDVENDEVVDKKEKNEDSNNKSEESSDDDDDWEK 632
++ ++ E + + E E E + E+S+D+ +
Sbjct: 174 PRLTAEELEAEVQAAQVAGLVAAGELSEEAAE--AVLEGDASLEEVKAEASEDNAGTDS 230
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.132 0.378
Gapped
Lambda K H
0.267 0.0472 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,790,381
Number of extensions: 606703
Number of successful extensions: 1120
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1105
Number of HSP's successfully gapped: 60
Length of query: 646
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 546
Effective length of database: 3,909,693
Effective search space: 2134692378
Effective search space used: 2134692378
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.5 bits)