RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12216
         (646 letters)



>d2q0zx1 a.289.1.1 (X:33-208) Protein pro2281 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 176

 Score =  118 bits (298), Expect = 1e-31
 Identities = 51/199 (25%), Positives = 99/199 (49%), Gaps = 25/199 (12%)

Query: 101 LKRVLMILGASLEFDRRFNSEIIERPSDEIEVPQLIRQIPNLGEKNRERPLYHKYSIKAR 160
           ++ ++ I+  + E++      I  R  ++  + QL +++P+        P ++   +K  
Sbjct: 3   VRGLIEIISNAAEYE-----NIPIRHHEDNLLRQLAQKVPH----KLNNPKFNDPHVKTN 53

Query: 161 ALIYAHLSNMQLTSETLEADRMYIVKKCPYLLQEMVTCISQLILLAYAQRVPRLIHIETL 220
            L+ AHLS MQL++E L++D   I+ K   L+Q  V  +S    L+ A            
Sbjct: 54  LLLQAHLSRMQLSAE-LQSDTEEILSKAIRLIQACVDVLSSNGWLSPAL----------- 101

Query: 221 ENVMKLCPMIVQGMWDFKNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVV 280
              M+L  M+ Q MW   + L QLP+ T +H+K   C  + ++S+    +M++EER +++
Sbjct: 102 -AAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKR--CTDKGVESVFDIMEMEDEERNALL 158

Query: 281 KFMNDEQYSDMLKVLGNMP 299
           + + D Q +D+ +     P
Sbjct: 159 Q-LTDSQIADVARFCNRYP 176



 Score = 41.1 bits (96), Expect = 1e-04
 Identities = 15/56 (26%), Positives = 33/56 (58%), Gaps = 3/56 (5%)

Query: 373 LPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMP 428
           LP+ T +H+K   C  + ++S+    +M++EER ++++ + D Q +D+ +     P
Sbjct: 124 LPHFTSEHIKR--CTDKGVESVFDIMEMEDEERNALLQ-LTDSQIADVARFCNRYP 176


>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3
          (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 94

 Score = 27.7 bits (61), Expect = 1.3
 Identities = 6/30 (20%), Positives = 20/30 (66%), Gaps = 2/30 (6%)

Query: 1  MKLTKAYQALTDEESRRNFEKYGNPDGPGA 30
          +++ +A++ L +EE+++ ++   +  GP +
Sbjct: 66 IEIDQAWKILGNEETKKKYDLQRS--GPSS 93


>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain
          {Escherichia coli [TaxId: 562]}
          Length = 75

 Score = 26.9 bits (59), Expect = 1.9
 Identities = 8/25 (32%), Positives = 17/25 (68%)

Query: 1  MKLTKAYQALTDEESRRNFEKYGNP 25
           ++ +AY+ LTD + R  +++YG+ 
Sbjct: 47 KEIKEAYEVLTDSQKRAAYDQYGHA 71


>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain
          {Murine polyomavirus [TaxId: 10634]}
          Length = 79

 Score = 26.1 bits (57), Expect = 3.5
 Identities = 3/23 (13%), Positives = 5/23 (21%)

Query: 1  MKLTKAYQALTDEESRRNFEKYG 23
           +L   +     E         G
Sbjct: 53 QELNSLWGTFKTEVYNLRMNLGG 75


>d2c4ja2 c.47.1.5 (A:2-85) Class mu GST {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 84

 Score = 25.4 bits (55), Expect = 8.2
 Identities = 12/64 (18%), Positives = 17/64 (26%), Gaps = 6/64 (9%)

Query: 203 ILLAYAQRVPRLIHIETLENVMKLCPMIVQGMWDFKNPLLQLPYVTDDHLKHF----ICK 258
           +LL Y             +         +   +        LPY+ D   K      I  
Sbjct: 18  LLLEYTDSSYEEKKYTMGDAPDYDRSQWLNEKFKLGLDFPNLPYLIDGTHKITQSNAIL- 76

Query: 259 KRYI 262
            RYI
Sbjct: 77  -RYI 79


>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 77

 Score = 25.1 bits (54), Expect = 8.3
 Identities = 8/24 (33%), Positives = 14/24 (58%)

Query: 1  MKLTKAYQALTDEESRRNFEKYGN 24
           ++ +AY  L+D   R  F++YG 
Sbjct: 46 KEIAEAYDVLSDPRKREIFDRYGE 69


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.132    0.378 

Gapped
Lambda     K      H
   0.267   0.0742    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,400,094
Number of extensions: 115973
Number of successful extensions: 282
Number of sequences better than 10.0: 1
Number of HSP's gapped: 280
Number of HSP's successfully gapped: 15
Length of query: 646
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 555
Effective length of database: 1,158,166
Effective search space: 642782130
Effective search space used: 642782130
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (25.3 bits)