BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12217
(262 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 18/24 (75%)
Query: 40 EVRCHPAPDAFNPCEDLMGNWALR 63
+V C P PDAFNPCED+MG LR
Sbjct: 327 DVTCSPKPDAFNPCEDIMGYNILR 350
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|3OAX|B Chain B, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|1GZM|A Chain A, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1GZM|B Chain B, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1HZX|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1HZX|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|2I36|A Chain A, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|B Chain B, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|C Chain C, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I35|A Chain A, Crystal Structure Of Rhombohedral Crystal Form Of
Ground-State Rhodopsin
pdb|2I37|A Chain A, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|B Chain B, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|C Chain C, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2HPY|A Chain A, Crystallographic Model Of Lumirhodopsin
pdb|2HPY|B Chain B, Crystallographic Model Of Lumirhodopsin
pdb|2PED|A Chain A, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2PED|B Chain B, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2G87|A Chain A, Crystallographic Model Of Bathorhodopsin
pdb|2G87|B Chain B, Crystallographic Model Of Bathorhodopsin
pdb|1L9H|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1L9H|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1U19|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
pdb|1U19|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
Length = 349
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 55/125 (44%), Gaps = 10/125 (8%)
Query: 138 GCQMAGFLTVFSSVLSIFTLTVITCERWYTITYAIHLNRRLKLSTATKIMVVGWVYSIAM 197
GC + GF +++++L V+ ER+ + + N R + A + WV ++A
Sbjct: 110 GCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMS-NFRFGENHAIMGVAFTWVMALAC 168
Query: 198 AALPLFDVSNYSKTSIC--------LPMKNTNSTDSAYLIFLLLFNGLAFWMICACYARM 249
AA PL S Y + P + TN+ +F++ F + +I CY ++
Sbjct: 169 AAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFI-IPLIVIFFCYGQL 227
Query: 250 YSSIR 254
+++
Sbjct: 228 VFTVK 232
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted)
pdb|1LN6|A Chain A, Structure Of Bovine Rhodopsin (Metarhodopsin Ii)
pdb|3CAP|A Chain A, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3CAP|B Chain B, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3C9L|A Chain A, Structure Of Ground-State Bovine Rhodospin In A Hexagonal
Crystal Form
pdb|1F88|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1F88|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|3DQB|A Chain A, Crystal Structure Of The Active G-protein-coupled Receptor
Opsin In Complex With A C-terminal Peptide Derived From
The Galpha Subunit Of Transducin
pdb|3PQR|A Chain A, Crystal Structure Of Metarhodopsin Ii In Complex With A
C-Terminal Peptide Derived From The Galpha Subunit Of
Transducin
pdb|3PXO|A Chain A, Crystal Structure Of Metarhodopsin Ii
Length = 348
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 55/125 (44%), Gaps = 10/125 (8%)
Query: 138 GCQMAGFLTVFSSVLSIFTLTVITCERWYTITYAIHLNRRLKLSTATKIMVVGWVYSIAM 197
GC + GF +++++L V+ ER+ + + N R + A + WV ++A
Sbjct: 109 GCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMS-NFRFGENHAIMGVAFTWVMALAC 167
Query: 198 AALPLFDVSNYSKTSIC--------LPMKNTNSTDSAYLIFLLLFNGLAFWMICACYARM 249
AA PL S Y + P + TN+ +F++ F + +I CY ++
Sbjct: 168 AAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFI-IPLIVIFFCYGQL 226
Query: 250 YSSIR 254
+++
Sbjct: 227 VFTVK 231
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
pdb|2J4Y|B Chain B, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
Length = 349
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 55/125 (44%), Gaps = 10/125 (8%)
Query: 138 GCQMAGFLTVFSSVLSIFTLTVITCERWYTITYAIHLNRRLKLSTATKIMVVGWVYSIAM 197
GC + GF +++++L V+ ER+ + + N R + A + WV ++A
Sbjct: 110 GCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMS-NFRFGENHAIMGVAFTWVMALAC 168
Query: 198 AALPLFDVSNYSKTSIC--------LPMKNTNSTDSAYLIFLLLFNGLAFWMICACYARM 249
AA PL S Y + P + TN+ +F++ F + +I CY ++
Sbjct: 169 AAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFI-IPLIVIFFCYGQL 227
Query: 250 YSSIR 254
+++
Sbjct: 228 VFTVK 232
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal
Crystal Form
Length = 348
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 55/125 (44%), Gaps = 10/125 (8%)
Query: 138 GCQMAGFLTVFSSVLSIFTLTVITCERWYTITYAIHLNRRLKLSTATKIMVVGWVYSIAM 197
GC + GF +++++L V+ ER+ + + N R + A + WV ++A
Sbjct: 109 GCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMS-NFRFGENHAIMGVAFTWVMALAC 167
Query: 198 AALPLFDVSNYSKTSIC--------LPMKNTNSTDSAYLIFLLLFNGLAFWMICACYARM 249
AA PL S Y + P + TN+ +F++ F + +I CY ++
Sbjct: 168 AAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFI-IPLIVIFFCYGQL 226
Query: 250 YSSIR 254
+++
Sbjct: 227 VFTVK 231
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c,
D282c Rhodopsin Mutant With Bound Galphact Peptide
Length = 349
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 55/125 (44%), Gaps = 10/125 (8%)
Query: 138 GCQMAGFLTVFSSVLSIFTLTVITCERWYTITYAIHLNRRLKLSTATKIMVVGWVYSIAM 197
GC + GF +++++L V+ ER+ + + N R + A + WV ++A
Sbjct: 110 GCNLQGFFATLGGEIALWSLVVLAIERYVVVCKPMS-NFRFGENHAIMGVAFTWVMALAC 168
Query: 198 AALPLFDVSNYSKTSIC--------LPMKNTNSTDSAYLIFLLLFNGLAFWMICACYARM 249
AA PL S Y + P + TN+ +F++ F + +I CY ++
Sbjct: 169 AAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFI-IPLIVIFFCYGQL 227
Query: 250 YSSIR 254
+++
Sbjct: 228 VFTVK 232
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively
Active N2c,M257y,D282c Rhodopsin Mutant In Complex With
A Peptide Resembling The C-Terminus Of The
Galpha-Protein Subunit (Gact)
Length = 349
Score = 35.4 bits (80), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 55/125 (44%), Gaps = 10/125 (8%)
Query: 138 GCQMAGFLTVFSSVLSIFTLTVITCERWYTITYAIHLNRRLKLSTATKIMVVGWVYSIAM 197
GC + GF +++++L V+ ER+ + + N R + A + WV ++A
Sbjct: 110 GCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMS-NFRFGENHAIMGVAFTWVMALAC 168
Query: 198 AALPLFDVSNYSKTSIC--------LPMKNTNSTDSAYLIFLLLFNGLAFWMICACYARM 249
AA PL S Y + P + TN+ +F++ F + +I CY ++
Sbjct: 169 AAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFI-IPLIVIFFCYGQL 227
Query: 250 YSSIR 254
+++
Sbjct: 228 VFTVK 232
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor.
pdb|3NY8|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Inverse Agonist Ici 118,551
pdb|3NY9|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With A Novel Inverse Agonist
pdb|3NYA|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Neutral Antagonist Alprenolol
Length = 490
Score = 35.0 bits (79), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 15/116 (12%)
Query: 91 MTVPKFLMCNLAFADFCMGLYLIMIA----IMDVRSIGDYFNHAIYWQRGMGCQMAGFLT 146
TV + + +LA AD MGL ++ +M + + G+++ C+ +
Sbjct: 73 QTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFW-----------CEFWTSID 121
Query: 147 VFSSVLSIFTLTVITCERWYTITYAIHLNRRLKLSTATKIMVVGWVYSIAMAALPL 202
V SI+TL VI +R++ IT L + A I+++ W+ S + LP+
Sbjct: 122 VLCVTASIWTLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPI 177
>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed
With Nk1r
pdb|2KSA|A Chain A, Substance P In DmpcCHAPS ISOTROPIC Q0.25 BICELLES AS A
LIGAND FOR Nk1r
pdb|2KSB|A Chain A, Substance P In Isotropic Q0.25 DmpcCHAPSGM1 BICELLES AS A
LIGAND For Nk1r
Length = 364
Score = 35.0 bits (79), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 22/130 (16%)
Query: 87 SRFRMTVPKFLMCNLAFADFCMGLYLIMIAIMDVRSIGDYFNHAIY--WQRGM-GCQMAG 143
R R TV + + NLAFA+ M + ++ F +A++ W G+ C+
Sbjct: 61 KRMR-TVTNYFLVNLAFAEASMAAFNTVVN----------FTYAVHNEWYYGLFYCKFHN 109
Query: 144 FLTVFSSVLSIFTLTVITCERWYTITYAIHLNRRLKLSTATKIMV-VGWVYSIAMAALPL 202
F + + SI+++T + +R+ I + L RL +TATK+++ V WV ++ +A
Sbjct: 110 FFPIAAVFASIYSMTAVAFDRYMAIIHP--LQPRLS-ATATKVVICVIWVLALLLA---- 162
Query: 203 FDVSNYSKTS 212
F YS T
Sbjct: 163 FPQGYYSTTE 172
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin
Length = 372
Score = 34.7 bits (78), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Query: 92 TVPKFLMCNLAFADFCMGLYLIMIAIMDVRSIGDYFNHAIYWQRGMGCQMAGFLTVFSSV 151
T + NLAF+DF L + + +I + I+ C++ GF+
Sbjct: 66 TPANMFIINLAFSDFTFSL----VNGFPLMTISCFLKKWIF--GFAACKVYGFIGGIFGF 119
Query: 152 LSIFTLTVITCERWYTITYAIHLNRRLKLSTATKIMVVGWVYSIAMAALPLFDVSNYS 209
+SI T+ +I+ +R+ I + ++++ A +++ W++S+ A P+F Y+
Sbjct: 120 MSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIGPIFGWGAYT 177
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin
pdb|2Z73|B Chain B, Crystal Structure Of Squid Rhodopsin
pdb|3AYM|A Chain A, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYM|B Chain B, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYN|A Chain A, Crystal Structure Of Squid Isorhodopsin
pdb|3AYN|B Chain B, Crystal Structure Of Squid Isorhodopsin
Length = 448
Score = 34.7 bits (78), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Query: 92 TVPKFLMCNLAFADFCMGLYLIMIAIMDVRSIGDYFNHAIYWQRGMGCQMAGFLTVFSSV 151
T + NLAF+DF L + + +I + I+ C++ GF+
Sbjct: 67 TPANMFIINLAFSDFTFSL----VNGFPLMTISCFLKKWIF--GFAACKVYGFIGGIFGF 120
Query: 152 LSIFTLTVITCERWYTITYAIHLNRRLKLSTATKIMVVGWVYSIAMAALPLFDVSNYS 209
+SI T+ +I+ +R+ I + ++++ A +++ W++S+ A P+F Y+
Sbjct: 121 MSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIGPIFGWGAYT 178
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G
Protein- Coupled Receptor
Length = 500
Score = 34.3 bits (77), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 15/116 (12%)
Query: 91 MTVPKFLMCNLAFADFCMGLYLIMIA----IMDVRSIGDYFNHAIYWQRGMGCQMAGFLT 146
TV + + +LA AD MGL ++ +M + + G+++ C+ +
Sbjct: 72 QTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFW-----------CEFWTSID 120
Query: 147 VFSSVLSIFTLTVITCERWYTITYAIHLNRRLKLSTATKIMVVGWVYSIAMAALPL 202
V SI TL VI +R++ IT L + A I+++ W+ S + LP+
Sbjct: 121 VLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPI 176
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic
Receptor- Fab Complex
Length = 366
Score = 34.3 bits (77), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 15/116 (12%)
Query: 91 MTVPKFLMCNLAFADFCMGLYLIMIA----IMDVRSIGDYFNHAIYWQRGMGCQMAGFLT 146
TV + + +LA AD MGL ++ +M + + G+++ C+ +
Sbjct: 66 QTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFW-----------CEFWTSID 114
Query: 147 VFSSVLSIFTLTVITCERWYTITYAIHLNRRLKLSTATKIMVVGWVYSIAMAALPL 202
V SI TL VI +R++ IT L + A I+++ W+ S + LP+
Sbjct: 115 VLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPI 170
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 365
Score = 34.3 bits (77), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 15/116 (12%)
Query: 91 MTVPKFLMCNLAFADFCMGLYLIMIA----IMDVRSIGDYFNHAIYWQRGMGCQMAGFLT 146
TV + + +LA AD MGL ++ +M + + G+++ C+ +
Sbjct: 65 QTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFW-----------CEFWTSID 113
Query: 147 VFSSVLSIFTLTVITCERWYTITYAIHLNRRLKLSTATKIMVVGWVYSIAMAALPL 202
V SI TL VI +R++ IT L + A I+++ W+ S + LP+
Sbjct: 114 VLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPI 169
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The
Beta2 Adrenoceptor
Length = 501
Score = 34.3 bits (77), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 15/116 (12%)
Query: 91 MTVPKFLMCNLAFADFCMGLYLIMIA----IMDVRSIGDYFNHAIYWQRGMGCQMAGFLT 146
TV + + +LA AD MGL ++ +M + + G+++ C+ +
Sbjct: 73 QTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFW-----------CEFWTSID 121
Query: 147 VFSSVLSIFTLTVITCERWYTITYAIHLNRRLKLSTATKIMVVGWVYSIAMAALPL 202
V SI TL VI +R++ IT L + A I+++ W+ S + LP+
Sbjct: 122 VLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPI 177
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 514
Score = 33.9 bits (76), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 7/112 (6%)
Query: 91 MTVPKFLMCNLAFADFCMGLYLIMIAIMDVRSIGDYFNHAIYWQRGMGCQMAGFLTVFSS 150
TV + + +LA AD MGL ++ + + F + +W C+ + V
Sbjct: 214 QTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGN--FW-----CEFWTSIDVLCV 266
Query: 151 VLSIFTLTVITCERWYTITYAIHLNRRLKLSTATKIMVVGWVYSIAMAALPL 202
SI TL VI +R++ IT L + A I+++ W+ S + LP+
Sbjct: 267 TASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPI 318
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor
pdb|3REY|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Xac
pdb|3RFM|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Caffeine
pdb|3UZA|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
6-(2,6-
Dimethylpyridin-4-Yl)-5-Phenyl-1,2,4-Triazin-3-Amine
pdb|3UZC|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
4-(3-Amino-5- Phenyl-1,2,4-Triazin-6-Yl)-2-Chlorophenol
Length = 329
Score = 33.9 bits (76), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 55/133 (41%), Gaps = 14/133 (10%)
Query: 93 VPKFLMCNLAFADFCMGLYLIMIAIMDVRSIGDYFNHAIYWQRGMGCQMAGFLTVFSSVL 152
V + + +LA AD +G+ I AI +I F A + GC + +
Sbjct: 40 VTNYFVVSLAAADILVGVLAIPFAI----TISTGFCAACH-----GCLFIACFVLVLAQS 90
Query: 153 SIFTLTVITCERWYTITYAIHLNRRLKLSTATKIMVVGWVYSIAMAALPLFDVSNYSKTS 212
SIF+L I +R+ I + N + + A I+ + WV S A+ P+ +N +
Sbjct: 91 SIFSLLAIAIDRYIAIAIPLRYNGLVTGTRAAGIIAICWVLSFAIGLTPMLGWNNCGQ-- 148
Query: 213 ICLPMKNTNSTDS 225
P + N +
Sbjct: 149 ---PKEGKNHSQG 158
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 342
Score = 33.9 bits (76), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 15/116 (12%)
Query: 91 MTVPKFLMCNLAFADFCMGLYLIMIA----IMDVRSIGDYFNHAIYWQRGMGCQMAGFLT 146
TV + + +LA AD MGL ++ +M + + G+++ C+ +
Sbjct: 42 QTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFW-----------CEFWTSID 90
Query: 147 VFSSVLSIFTLTVITCERWYTITYAIHLNRRLKLSTATKIMVVGWVYSIAMAALPL 202
V SI TL VI +R++ IT L + A I+++ W+ S + LP+
Sbjct: 91 VLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPI 146
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine
Receptor Bound To Zm241385.
pdb|3QAK|A Chain A, Agonist Bound Structure Of The Human Adenosine A2a
Receptor
Length = 488
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 9/117 (7%)
Query: 91 MTVPKFLMCNLAFADFCMGLYLIMIAIMDVRSIGDYFNHAIYWQRGMGCQMAGFLTVFSS 150
V + + +LA AD +G+ I AI +I F A + GC + +
Sbjct: 53 QNVTNYFVVSLAAADIAVGVLAIPFAI----TISTGFCAACH-----GCLFIACFVLVLT 103
Query: 151 VLSIFTLTVITCERWYTITYAIHLNRRLKLSTATKIMVVGWVYSIAMAALPLFDVSN 207
SIF+L I +R+ I + N + + A I+ + WV S A+ P+ +N
Sbjct: 104 QSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNN 160
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex
Length = 458
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 15/116 (12%)
Query: 91 MTVPKFLMCNLAFADFCMGLYLIMIA----IMDVRSIGDYFNHAIYWQRGMGCQMAGFLT 146
TV + + +LA AD MGL ++ +M + + G+++ C+ +
Sbjct: 41 QTVTNYFITSLACADLVMGLAVVPFGAACILMKMWTFGNFW-----------CEFWTSID 89
Query: 147 VFSSVLSIFTLTVITCERWYTITYAIHLNRRLKLSTATKIMVVGWVYSIAMAALPL 202
V SI TL VI +R++ IT L + A I+++ W+ S + LP+
Sbjct: 90 VLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPI 145
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization
Of A G Protein Coupled Receptor
Length = 309
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 7/112 (6%)
Query: 91 MTVPKFLMCNLAFADFCMGLYLIMIAIMDVRSIGDYFNHAIYWQRGMGCQMAGFLTVFSS 150
TV + + +LA AD MGL ++ + + F + +W C+ + V
Sbjct: 37 QTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGN--FW-----CEFWTSIDVLCV 89
Query: 151 VLSIFTLTVITCERWYTITYAIHLNRRLKLSTATKIMVVGWVYSIAMAALPL 202
SI TL VI +R++ IT L + A I+++ W+ S + LP+
Sbjct: 90 TASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPI 141
>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In
Complex With Zm241385 At 1.8a Resolution
Length = 447
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 9/117 (7%)
Query: 91 MTVPKFLMCNLAFADFCMGLYLIMIAIMDVRSIGDYFNHAIYWQRGMGCQMAGFLTVFSS 150
V + + +LA AD +G+ I AI +I F A + GC + +
Sbjct: 63 QNVTNYFVVSLAAADIAVGVLAIPFAI----TISTGFCAACH-----GCLFIACFVLVLT 113
Query: 151 VLSIFTLTVITCERWYTITYAIHLNRRLKLSTATKIMVVGWVYSIAMAALPLFDVSN 207
SIF+L I +R+ I + N + + A I+ + WV S A+ P+ +N
Sbjct: 114 QSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNN 170
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 2.7 A Resolution
pdb|3VGA|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 3.1 A Resolution
Length = 326
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 9/115 (7%)
Query: 93 VPKFLMCNLAFADFCMGLYLIMIAIMDVRSIGDYFNHAIYWQRGMGCQMAGFLTVFSSVL 152
V + + +LA AD +G+ I AI +I F A + GC + +
Sbjct: 40 VTNYFVVSLAAADIAVGVLAIPFAI----TISTGFCAACH-----GCLFIACFVLVLTQS 90
Query: 153 SIFTLTVITCERWYTITYAIHLNRRLKLSTATKIMVVGWVYSIAMAALPLFDVSN 207
SIF+L I +R+ I + N + + A I+ + WV S A+ P+ +N
Sbjct: 91 SIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNN 145
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound
pdb|2YDV|A Chain A, Thermostabilised Human A2a Receptor With Neca Bound
Length = 325
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 9/115 (7%)
Query: 93 VPKFLMCNLAFADFCMGLYLIMIAIMDVRSIGDYFNHAIYWQRGMGCQMAGFLTVFSSVL 152
V + + + A AD +G+ I AI +I F A + GC + +
Sbjct: 40 VTNYFVVSAAAADILVGVLAIPFAI----AISTGFCAACH-----GCLFIACFVLVLTAS 90
Query: 153 SIFTLTVITCERWYTITYAIHLNRRLKLSTATKIMVVGWVYSIAMAALPLFDVSN 207
SIF+L I +R+ I + N + + A I+ + WV S A+ P+ +N
Sbjct: 91 SIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNN 145
>pdb|3V2W|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
3.35a
pdb|3V2Y|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
2.80a
Length = 520
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 21/111 (18%)
Query: 153 SIFTLTVITCERWYTITYAIHLNRRLKLSTATK------IMVVGWVYSIAMAALPLFD-- 204
S+F+L I ER+ T+ ++KL + ++ WV S+ + LP+
Sbjct: 149 SVFSLLAIAIERYITML-------KMKLHNGSNNFRLFLLISACWVISLILGGLPIMGWN 201
Query: 205 -VSNYSKTSICLPMKNTNSTDSAYLIFLLLFNGLAFWMICACYARMYSSIR 254
+S S S LP+ + + Y++F L I Y R+YS +R
Sbjct: 202 CISALSSCSTVLPLYHKH-----YILFCTTVFTLLLLSIVILYCRIYSLVR 247
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.329 0.138 0.449
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,690,105
Number of Sequences: 62578
Number of extensions: 222798
Number of successful extensions: 401
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 378
Number of HSP's gapped (non-prelim): 26
length of query: 262
length of database: 14,973,337
effective HSP length: 97
effective length of query: 165
effective length of database: 8,903,271
effective search space: 1469039715
effective search space used: 1469039715
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 50 (23.9 bits)