Query psy12217
Match_columns 262
No_of_seqs 179 out of 1800
Neff 9.8
Searched_HMMs 46136
Date Fri Aug 16 21:48:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12217.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12217hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA03234 DNA packaging protein 100.0 1E-30 2.2E-35 223.1 18.1 188 57-256 30-227 (338)
2 KOG4219|consensus 100.0 4E-30 8.6E-35 213.8 10.9 193 55-257 31-240 (423)
3 KOG2087|consensus 100.0 1.1E-29 2.3E-34 209.0 13.2 222 38-259 3-225 (363)
4 PHA02638 CC chemokine receptor 100.0 1.2E-27 2.7E-32 209.4 23.1 196 51-257 90-304 (417)
5 PHA03235 DNA packaging protein 100.0 5.5E-28 1.2E-32 210.8 20.1 191 57-258 30-236 (409)
6 PHA02834 chemokine receptor-li 100.0 2E-27 4.4E-32 202.4 20.7 188 59-258 28-221 (323)
7 KOG4220|consensus 99.9 2.4E-29 5.2E-34 209.0 2.1 192 59-260 30-227 (503)
8 PHA03087 G protein-coupled che 99.9 1.2E-25 2.6E-30 192.6 19.7 191 58-258 39-235 (335)
9 PF00001 7tm_1: 7 transmembran 99.9 6.8E-26 1.5E-30 185.4 13.0 177 76-260 1-182 (257)
10 PF10320 7TM_GPCR_Srsx: Serpen 99.7 3.2E-16 6.9E-21 129.2 11.3 138 71-218 2-139 (257)
11 PF10328 7TM_GPCR_Srx: Serpent 99.4 6.9E-12 1.5E-16 104.6 15.9 127 69-203 3-131 (274)
12 PF11710 Git3: G protein-coupl 99.3 1.7E-10 3.7E-15 91.2 17.6 182 68-260 9-201 (201)
13 PF10324 7TM_GPCR_Srw: Serpent 99.3 5.5E-11 1.2E-15 101.2 13.9 190 68-259 5-225 (318)
14 PF05296 TAS2R: Mammalian tast 99.2 7.9E-10 1.7E-14 93.2 17.2 194 59-260 6-214 (303)
15 PF05462 Dicty_CAR: Slime mold 99.2 2.7E-09 5.8E-14 89.4 19.0 143 60-217 7-149 (303)
16 PF10323 7TM_GPCR_Srv: Serpent 99.0 3.5E-09 7.5E-14 88.6 8.9 180 70-256 5-193 (283)
17 PF10321 7TM_GPCR_Srt: Serpent 98.9 3.5E-07 7.7E-12 77.1 17.8 186 58-259 31-228 (313)
18 PF10292 7TM_GPCR_Srab: Serpen 98.6 2.6E-05 5.5E-10 66.7 21.0 155 64-220 21-177 (324)
19 PF03402 V1R: Vomeronasal orga 98.5 1.4E-06 3.1E-11 71.3 9.8 162 89-261 6-182 (265)
20 PF10317 7TM_GPCR_Srd: Serpent 98.2 0.00015 3.3E-09 61.0 16.9 134 64-203 3-141 (292)
21 PF00002 7tm_2: 7 transmembran 98.0 2E-06 4.3E-11 70.3 1.8 138 63-215 4-144 (242)
22 PF02117 7TM_GPCR_Sra: Serpent 98.0 0.0011 2.5E-08 56.6 17.6 112 60-174 21-136 (328)
23 PF02118 Srg: Srg family chemo 97.8 0.00042 9.1E-09 57.7 12.4 186 68-258 6-200 (275)
24 PF10316 7TM_GPCR_Srbc: Serpen 97.7 0.0041 8.8E-08 51.6 15.4 121 62-187 8-129 (273)
25 KOG4193|consensus 97.5 0.0036 7.7E-08 57.6 14.1 135 67-220 327-468 (610)
26 PF06681 DUF1182: Protein of u 97.5 0.0026 5.6E-08 49.5 10.9 109 138-255 116-224 (226)
27 PF04789 DUF621: Protein of un 97.3 0.046 9.9E-07 44.7 16.5 169 76-253 31-213 (305)
28 PF10327 7TM_GPCR_Sri: Serpent 97.3 0.0074 1.6E-07 51.1 12.5 195 61-260 10-227 (303)
29 PF01534 Frizzled: Frizzled/Sm 97.2 0.071 1.5E-06 45.5 17.9 168 59-229 8-184 (328)
30 KOG4564|consensus 97.0 0.083 1.8E-06 47.0 16.6 152 64-220 149-305 (473)
31 PF10326 7TM_GPCR_Str: Serpent 96.9 0.002 4.4E-08 54.5 6.0 119 67-186 6-128 (307)
32 PF02101 Ocular_alb: Ocular al 96.8 0.093 2E-06 45.0 14.6 133 63-203 30-174 (405)
33 PF03383 Serpentine_r_xa: Caen 96.5 0.0022 4.7E-08 48.0 2.8 62 142-203 47-108 (153)
34 PF10318 7TM_GPCR_Srh: Serpent 96.0 0.58 1.3E-05 39.4 15.2 139 61-204 5-148 (302)
35 PF02076 STE3: Pheromone A rec 95.3 1.5 3.2E-05 36.8 15.3 132 72-216 3-140 (283)
36 PF10322 7TM_GPCR_Sru: Serpent 92.5 3.7 8.1E-05 34.8 12.0 112 139-257 103-226 (307)
37 PF02175 7TM_GPCR_Srb: Serpent 89.9 9.1 0.0002 30.9 20.3 41 138-178 84-124 (236)
38 PF10319 7TM_GPCR_Srj: Serpent 87.5 17 0.00036 30.9 15.5 116 68-184 13-133 (310)
39 PF03125 Sre: C. elegans Sre G 73.8 60 0.0013 28.2 17.7 118 60-177 27-161 (365)
40 PF10325 7TM_GPCR_Srz: Serpent 67.1 67 0.0015 26.4 9.4 112 142-257 85-197 (267)
41 PF01102 Glycophorin_A: Glycop 54.8 21 0.00045 25.8 3.6 21 72-92 75-95 (122)
42 PF09882 DUF2109: Predicted me 44.1 65 0.0014 21.1 4.2 48 69-116 3-50 (78)
43 PF05568 ASFV_J13L: African sw 42.7 40 0.00087 24.9 3.5 14 247-260 47-60 (189)
44 cd07912 Tweety_N N-terminal do 40.9 2.1E+02 0.0045 25.6 8.4 47 68-114 44-99 (418)
45 PF00003 7tm_3: 7 transmembran 38.7 89 0.0019 25.0 5.5 26 138-163 55-80 (238)
46 PF05915 DUF872: Eukaryotic pr 34.4 1.7E+02 0.0037 20.9 6.4 13 62-74 46-58 (115)
47 PF06679 DUF1180: Protein of u 28.3 2.7E+02 0.0059 21.3 6.7 28 61-88 94-121 (163)
48 PF12606 RELT: Tumour necrosis 28.2 89 0.0019 18.6 2.8 23 64-88 5-27 (50)
49 TIGR01477 RIFIN variant surfac 28.0 89 0.0019 27.1 3.9 30 62-91 310-339 (353)
50 PF11446 DUF2897: Protein of u 26.6 89 0.0019 19.0 2.7 20 67-86 9-28 (55)
51 PTZ00046 rifin; Provisional 25.0 1.1E+02 0.0024 26.6 3.9 29 63-91 316-344 (358)
52 TIGR02736 cbb3_Q_epsi cytochro 24.0 1.4E+02 0.0031 18.2 3.1 24 236-259 6-29 (56)
53 PF02009 Rifin_STEVOR: Rifin/s 23.6 88 0.0019 26.5 3.1 30 62-91 256-285 (299)
54 PF08114 PMP1_2: ATPase proteo 22.8 25 0.00054 19.8 -0.2 24 65-88 10-33 (43)
55 PF08693 SKG6: Transmembrane a 22.6 43 0.00094 18.9 0.7 22 236-257 18-39 (40)
56 PF10873 DUF2668: Protein of u 22.4 68 0.0015 23.8 1.9 34 59-92 61-94 (155)
57 PHA02909 hypothetical protein; 21.2 2.1E+02 0.0045 17.4 4.5 26 137-162 31-56 (72)
No 1
>PHA03234 DNA packaging protein UL33; Provisional
Probab=99.97 E-value=1e-30 Score=223.12 Aligned_cols=188 Identities=13% Similarity=0.120 Sum_probs=143.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHH--HhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccc
Q psy12217 57 MGNWALRVSVWFVAIAALVGNLAVLLVL--ISSRFRMTVPKFLMCNLAFADFCMGLYLIMIAIMDVRSIGDYFNHAIYWQ 134 (262)
Q Consensus 57 ~~~~~~~~~~~~i~~~g~~gN~~vl~~~--~~~~~~~~~~~~~l~nLaiaDll~~~~~~~~~~~~~~~~~~~~~~~~~w~ 134 (262)
..+.++..+|.+++++|++||+++++++ .+++++|+++|+++.|||+||++.++..+|+.... ..+|.
T Consensus 30 ~~~~~~~~~y~~vf~~gl~gN~lvl~v~~~~~~~~~rt~tn~fi~NLAvaDLL~~l~lp~~~~~~----------~~~w~ 99 (338)
T PHA03234 30 KAQILESAINGIMLTLIIPMIIIVICTLIIYHKVAKHNATSFYLITLFASDFLHMLCVFFLTLNR----------EALFN 99 (338)
T ss_pred HHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hCCcc
Confidence 4577889999999999999999999965 45566789999999999999999988877765421 23699
Q ss_pred cCc-cchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccchhhHHHHHHHHHHHHHHHhhhcceeccCC--C-C
Q psy12217 135 RGM-GCQMAGFLTVFSSVLSIFTLTVITCERWYTITYAIHLNRRLKLSTATKIMVVGWVYSIAMAALPLFDVSNY--S-K 210 (262)
Q Consensus 135 ~~~-~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~P~~~~~~~~~~~~~~~~~~~W~~s~~~~~~~~~~~~~~--~-~ 210 (262)
+|+ .|++..++.....++|++++++||+|||++|++|.+++. ++++....+++.|+.+++.+.|++...+.. + .
T Consensus 100 fG~~lCk~~~~~~~~~~~~Si~~L~~ISiDRY~aIv~p~~~~~--~~~~~~~~i~~~Wi~s~l~~~P~l~~~~~~~~~~~ 177 (338)
T PHA03234 100 FNQAFCQCVLFIYHASCSYSICMLAIIATIRYKTLHRRKKNDK--KNNHIGRNIGILFLASAMCAIPAALFVKTEGKKGN 177 (338)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHeeeechhhhhh--hhhhHHHHHHHHHHHHHHHHhhHhHeeeeeecCCC
Confidence 999 899999999999999999999999999999999988642 334444556667999999887776543322 1 2
Q ss_pred ceEEeecCCCCCCchhHHH----HHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy12217 211 TSICLPMKNTNSTDSAYLI----FLLLFNGLAFWMICACYARMYSSIRGG 256 (262)
Q Consensus 211 ~~~C~~~~~~~~~~~~~~~----~~~~~~~ip~~ii~~~y~~I~~~l~~~ 256 (262)
...|...++++.....+.. ..++++++|+++|.+||.+|.++++++
T Consensus 178 ~~~C~~~~~~~~~~~~~~~~~~~~~~~~f~iPl~im~~cY~~I~~~L~~~ 227 (338)
T PHA03234 178 YGKCNIHISSKKAYDLFIAIKIVFCFIWGIFPTMIFSFFYVIFCKALHAL 227 (338)
T ss_pred CCcCcccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2468665543222122221 123356899999999999999999763
No 2
>KOG4219|consensus
Probab=99.96 E-value=4e-30 Score=213.78 Aligned_cols=193 Identities=21% Similarity=0.378 Sum_probs=159.7
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccc
Q psy12217 55 DLMGNWALRVSVWFVAIAALVGNLAVLLVLISSRFRMTVPKFLMCNLAFADFCMGLYLIMIAIMDVRSIGDYFNHAIYWQ 134 (262)
Q Consensus 55 ~~~~~~~~~~~~~~i~~~g~~gN~~vl~~~~~~~~~~~~~~~~l~nLaiaDll~~~~~~~~~~~~~~~~~~~~~~~~~w~ 134 (262)
+...+.+.++++.++.+++++||++|++++..+|++|+.+|+++.|||+||++++++..+....... ...|.
T Consensus 31 p~~~~~~wai~yg~l~~vAv~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal--------~~~W~ 102 (423)
T KOG4219|consen 31 PAWQQALWAIAYGLLVFVAVVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQYAL--------HQEWY 102 (423)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHH--------Hhccc
Confidence 4466788999999999999999999999999999999999999999999999999998887765333 25899
Q ss_pred cCc-cchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccchhhHHHHHHHHHHHHHHHhhhcceecc-----CC
Q psy12217 135 RGM-GCQMAGFLTVFSSVLSIFTLTVITCERWYTITYAIHLNRRLKLSTATKIMVVGWVYSIAMAALPLFDVS-----NY 208 (262)
Q Consensus 135 ~~~-~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~P~~~~~~~~~~~~~~~~~~~W~~s~~~~~~~~~~~~-----~~ 208 (262)
+|. +|++..|+...+..+|++++++||+|||+||.+|++ .+.++|..+..++++|++|+++++|..+..+ .+
T Consensus 103 ~G~f~C~f~nf~~itav~vSVfTlvAiA~DRy~AIi~Pl~--~r~s~r~sk~iIllIW~lA~l~a~P~~l~s~v~~~~~~ 180 (423)
T KOG4219|consen 103 FGSFYCRFVNFFPITAVFVSVFTLVAIAIDRYMAIIHPLQ--PRPSRRSSKIIILLIWALALLLALPQLLYSSVEELYLY 180 (423)
T ss_pred cccceeeeccccchhhhhHhHHHHHHHHHHHHHHHhhhcc--cCCCCcceeehhHHHHHHHHHHhccceeeeeeEEeecc
Confidence 999 899999999999999999999999999999999999 4489999999999999999999855444221 11
Q ss_pred --CCceEEeecCCCC-----CCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy12217 209 --SKTSICLPMKNTN-----STDS----AYLIFLLLFNGLAFWMICACYARMYSSIRGGT 257 (262)
Q Consensus 209 --~~~~~C~~~~~~~-----~~~~----~~~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~ 257 (262)
.....|...+++. .... ++....++.+++|++++..+|..|.+++|+++
T Consensus 181 d~~~~~~~~~~~pe~~~~~~~~~~~~~~y~~vl~~lqYflPliVl~~~Yt~iav~LW~~~ 240 (423)
T KOG4219|consen 181 DGESRVVCVTAWPEHVCPTENESLLMQGYNYVLLFLQYFLPLIVLGLAYTVIAVTLWGRR 240 (423)
T ss_pred CCcceEEEEEecccccCCcchhhhhhcceeeeehhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1245675544443 1111 22345567789999999999999999999875
No 3
>KOG2087|consensus
Probab=99.96 E-value=1.1e-29 Score=209.02 Aligned_cols=222 Identities=50% Similarity=0.979 Sum_probs=208.6
Q ss_pred CCcceecCCCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q psy12217 38 YHEVRCHPAPDAFNPCEDLMGNWALRVSVWFVAIAALVGNLAVLLVLISSRFRMTVPKFLMCNLAFADFCMGLYLIMIAI 117 (262)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~gN~~vl~~~~~~~~~~~~~~~~l~nLaiaDll~~~~~~~~~~ 117 (262)
..+..|.|.+|...||++.+++.++.+..+++..+++.||.+|+......|...+...+++.|||++|+++++.......
T Consensus 3 ~~~~~C~P~~da~~pcEdllg~~~lRi~vW~i~~lAi~gN~~Vl~~~~~~~~~~~~~~~li~~la~ad~~mGiYl~~ia~ 82 (363)
T KOG2087|consen 3 PHVITCKPSPDAFNPCEDLLGYWILRISVWVIALLAIVGNLLVLLTRFTSRYELNSHRFLICNLAFADLLMGIYLGLIAS 82 (363)
T ss_pred CccceecCCCCCCCcHHHhhccceeeehhhhhhhHHhccCeeeeeeeeehhhhccchHHHHHHHHHHHHHcchHHHHHHH
Confidence 46789999999999999999999999999999999999999999999888887888899999999999999999999999
Q ss_pred hhhhccccccccccccccCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccchhhHHHHHHHHHHHHHHH
Q psy12217 118 MDVRSIGDYFNHAIYWQRGMGCQMAGFLTVFSSVLSIFTLTVITCERWYTITYAIHLNRRLKLSTATKIMVVGWVYSIAM 197 (262)
Q Consensus 118 ~~~~~~~~~~~~~~~w~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~P~~~~~~~~~~~~~~~~~~~W~~s~~~ 197 (262)
++...+++|+++...|..|..|++.+|+..++.-.|++.++.+++||++.|.+|++.+++...|....+++..|+.+++.
T Consensus 83 vD~~~~gey~~~ai~W~tg~gC~~aGflavFASElSv~~LT~itlEr~l~i~~p~~~~~~~~lr~~~~ill~~wl~~~l~ 162 (363)
T KOG2087|consen 83 VDAKTRGEYYKHAIDWQTGLGCPVAGFLAVFASELSVFLLTLITLERWLSITYPFRLDRKAKLRPLVLILLLGWLFAFLM 162 (363)
T ss_pred hhHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhheeccccCCCcccccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888888888999999999999999
Q ss_pred hhhcceeccCCCCceEEeecCCCCCCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy12217 198 AALPLFDVSNYSKTSICLPMKNTNSTDS-AYLIFLLLFNGLAFWMICACYARMYSSIRGGTEG 259 (262)
Q Consensus 198 ~~~~~~~~~~~~~~~~C~~~~~~~~~~~-~~~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~~~ 259 (262)
+..|.++.+.|.....|.+.+.++.... +|....+....+-+++|.++|.+++..+++...+
T Consensus 163 A~~Pl~g~s~Y~~~~vClPL~~~~~~s~g~y~~~~l~~N~lafiiia~~Y~~iy~~l~~~~~~ 225 (363)
T KOG2087|consen 163 ALLPLFGISSYGASSVCLPLHIEEPLSTGYYLVALLGLNLLAFIIIAFSYGKIYCSLRKGDLS 225 (363)
T ss_pred HhccccCCCCCcccceeeecccCCccchhHHHHHHHHHHHHHHHHHHHHhhhhheeeecCCCc
Confidence 9999999999999999999988888777 6777777788999999999999999999987654
No 4
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=99.96 E-value=1.2e-27 Score=209.38 Aligned_cols=196 Identities=15% Similarity=0.311 Sum_probs=152.1
Q ss_pred CCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccc
Q psy12217 51 NPCEDLMGNWALRVSVWFVAIAALVGNLAVLLVLISSRFRMTVPKFLMCNLAFADFCMGLYLIMIAIMDVRSIGDYFNHA 130 (262)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~i~~~g~~gN~~vl~~~~~~~~~~~~~~~~l~nLaiaDll~~~~~~~~~~~~~~~~~~~~~~~ 130 (262)
.||........+..++.+++++|++||+++++++. +|++|+++|++++|||++|++..+..|.+. ... .
T Consensus 90 ~~c~~~~~~~~l~~~y~lvfvlgliGN~LVl~il~-~k~lrt~t~i~llnLAisDLl~~l~lPf~i-~~~---------~ 158 (417)
T PHA02638 90 NKCMYPSISEYIKIFYIIIFILGLFGNAAIIMILF-CKKIKTITDIYIFNLAISDLIFVIDFPFII-YNE---------F 158 (417)
T ss_pred CCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH-hccCCCHhHHHHHHHHHHHHHHHHHHHHHH-HHH---------h
Confidence 35643345678889999999999999999998765 578899999999999999998866554433 211 1
Q ss_pred cccccCc-cchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccchhhHHHHHHHHHHHHHHHhhhcceeccCC-
Q psy12217 131 IYWQRGM-GCQMAGFLTVFSSVLSIFTLTVITCERWYTITYAIHLNRRLKLSTATKIMVVGWVYSIAMAALPLFDVSNY- 208 (262)
Q Consensus 131 ~~w~~~~-~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~P~~~~~~~~~~~~~~~~~~~W~~s~~~~~~~~~~~~~~- 208 (262)
++|.+|+ .|++..++...+.+++++.++++++|||++|++|.++++..+++++...++++|+++++.+.|+.+..+..
T Consensus 159 ~~W~fg~~~Ck~~~~l~~~~~~~Si~~L~~isiDRYlaIv~p~~~~~~~~~~~~~i~~~~iW~~s~l~slP~~~~~~~~~ 238 (417)
T PHA02638 159 DQWIFGDFMCKVISASYYIGFFSNMFLITLMSIDRYFAILYPISFQKYRTFNIGIILCIISWILSLIITSPAYFIFEASN 238 (417)
T ss_pred ccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccceecHhhhHhhHhHHHHHHHHHHHHHHHHhhccc
Confidence 3799998 89999999999999999999999999999999999987777878888899999999999998887643311
Q ss_pred --------C---CceEEeecCCCCCC--c---hhHHH-HHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy12217 209 --------S---KTSICLPMKNTNST--D---SAYLI-FLLLFNGLAFWMICACYARMYSSIRGGT 257 (262)
Q Consensus 209 --------~---~~~~C~~~~~~~~~--~---~~~~~-~~~~~~~ip~~ii~~~y~~I~~~l~~~~ 257 (262)
. .+..|....+.+.. . ..+.+ ..++++++|++++++||.+|.++++|.+
T Consensus 239 ~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~i~~f~lPl~vmi~cY~~I~~~L~~~~ 304 (417)
T PHA02638 239 IIFSAQDSNETISNYQCTLIEDNEKNNISFLGRILQFEINILGMFIPIIIFAFCYIKIILKLKQLK 304 (417)
T ss_pred cccccccCCCCccCCeeeeeccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1 13478654433221 1 11222 2345678999999999999999997744
No 5
>PHA03235 DNA packaging protein UL33; Provisional
Probab=99.96 E-value=5.5e-28 Score=210.76 Aligned_cols=191 Identities=15% Similarity=0.243 Sum_probs=141.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccc
Q psy12217 57 MGNWALRVSVWFVAIAALVGNLAVLLVLISSRF--RMTVPKFLMCNLAFADFCMGLYLIMIAIMDVRSIGDYFNHAIYWQ 134 (262)
Q Consensus 57 ~~~~~~~~~~~~i~~~g~~gN~~vl~~~~~~~~--~~~~~~~~l~nLaiaDll~~~~~~~~~~~~~~~~~~~~~~~~~w~ 134 (262)
....+..+++.+++++|++||+++++++.++++ .++..++|+.|||++|++..+ ..|..+.. ....|.
T Consensus 30 ~~~~~~~~~~~li~vvGiigN~lVL~~~~~~~r~~~~~~~~~~I~NLAvsDLl~l~-~lP~~i~~---------~~~~~~ 99 (409)
T PHA03235 30 AARTTETFINLLIISVGGPLNLIVLVTQLLANRVHGFSTPTLYMTNLYLANLLTVF-VLPFIMLS---------NQGLLS 99 (409)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCccHHHHHHHHHHHHHHHH-HHHHHHHh---------cCcccc
Confidence 346778899999999999999999998654333 245678999999999998754 45544321 111244
Q ss_pred cCc-cchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccchhhHHHHHHHHHHHHHHHhhhcceec-----cCC
Q psy12217 135 RGM-GCQMAGFLTVFSSVLSIFTLTVITCERWYTITYAIHLNRRLKLSTATKIMVVGWVYSIAMAALPLFDV-----SNY 208 (262)
Q Consensus 135 ~~~-~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~P~~~~~~~~~~~~~~~~~~~W~~s~~~~~~~~~~~-----~~~ 208 (262)
.|. .|++..++...+..+|++++++||+|||++|++|.++ +..+++++...++++|+.++++++|+.+.. ...
T Consensus 100 ~g~~~Ck~~~~l~~~~~~~Si~tL~~ISiDRY~aI~~p~~~-~~~~~~~a~~ii~~iWi~sll~s~P~~~~~~~~~~~~~ 178 (409)
T PHA03235 100 GSVAGCKFASLLYYASCTVGFATVALIAADRYRVIHQRTRA-RSSAYRSTYKILGLTWFASLICSGPAPVYTTVVAHDDV 178 (409)
T ss_pred CCCCeehhHHHHHHHHHHHHHHHHHHHHHHHHHHeechhhc-cCcccchhhhhHHHHHHHHHHHHHHHHHHHhhhhcccc
Confidence 456 8999999999999999999999999999999999865 445688899999999999999987754321 111
Q ss_pred ----CCceEEeecCCCCCCch---hHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy12217 209 ----SKTSICLPMKNTNSTDS---AYLI-FLLLFNGLAFWMICACYARMYSSIRGGTE 258 (262)
Q Consensus 209 ----~~~~~C~~~~~~~~~~~---~~~~-~~~~~~~ip~~ii~~~y~~I~~~l~~~~~ 258 (262)
.....|...+..+.... .|.+ ..++.+++|+++|+++|.+|++++|++++
T Consensus 179 ~~~~~~~~~C~~~~~~~~~~~~~~~y~i~l~i~~f~iPl~im~~~Y~~I~~~l~~~~~ 236 (409)
T PHA03235 179 DPEAPGYETCVIYFRADQVKTVLSTFKVLLTLVWGIAPVVMMTWFYTFFYRTLKRASY 236 (409)
T ss_pred CcCCCCcceeeEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 12346865544332211 2333 33455789999999999999999987654
No 6
>PHA02834 chemokine receptor-like protein; Provisional
Probab=99.96 E-value=2e-27 Score=202.36 Aligned_cols=188 Identities=18% Similarity=0.287 Sum_probs=142.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccccCc-
Q psy12217 59 NWALRVSVWFVAIAALVGNLAVLLVLISSRFRMTVPKFLMCNLAFADFCMGLYLIMIAIMDVRSIGDYFNHAIYWQRGM- 137 (262)
Q Consensus 59 ~~~~~~~~~~i~~~g~~gN~~vl~~~~~~~~~~~~~~~~l~nLaiaDll~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~- 137 (262)
+.+..+++.+++++|++||+++++++.++|++ ++.|+++.|||++|++..+ ..|..+... ..+|.+|+
T Consensus 28 ~~~~~~~~~li~v~~~~gN~lVi~vi~~~~~~-~~~n~~i~nLAiaDll~~~-~lP~~i~~~---------~~~w~~g~~ 96 (323)
T PHA02834 28 NYFVIVFYILLFIFGLIGNVLVIAVLIVKRFM-FVVDVYLFNIAMSDLMLVF-SFPFIIHND---------LNEWIFGEF 96 (323)
T ss_pred hhhHHHHHHHHHHHHHhhHHHHHHHHHhcccc-chhhhhhHHHHHHHHHHHH-HHHHHHHHH---------cCCcCCcch
Confidence 45678899999999999999999998775554 5689999999999998644 455544221 12699998
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccchhhHHHHHHHHHHHHHHHhhhcceeccCC--CCceEEe
Q psy12217 138 GCQMAGFLTVFSSVLSIFTLTVITCERWYTITYAIHLNRRLKLSTATKIMVVGWVYSIAMAALPLFDVSNY--SKTSICL 215 (262)
Q Consensus 138 ~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~P~~~~~~~~~~~~~~~~~~~W~~s~~~~~~~~~~~~~~--~~~~~C~ 215 (262)
.|++..++...+..+|++++++||+|||++|++|++++. .+++++...++++|+.+++.+.|+..++... ++...|.
T Consensus 97 ~C~~~~~~~~~~~~~Si~tL~~IsidRY~aI~~P~~~~~-~~~~~~~~~i~~iWi~s~l~~~P~~~~~~~~~~~~~~~C~ 175 (323)
T PHA02834 97 MCKLVLGVYFVGFFSNMFFVTLISIDRYILVVNATKIKN-KSISLSVLLSVAAWVCSVILSMPAMVLYYVDNTDNLKQCI 175 (323)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhheeCchhccC-CccchHHHHHHHHHHHHHHHHhhHHHHHHhccCCCceEEe
Confidence 899999999999999999999999999999999998644 3557777888999999999987776544322 2345686
Q ss_pred ecCCCCCCch--hHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy12217 216 PMKNTNSTDS--AYLI-FLLLFNGLAFWMICACYARMYSSIRGGTE 258 (262)
Q Consensus 216 ~~~~~~~~~~--~~~~-~~~~~~~ip~~ii~~~y~~I~~~l~~~~~ 258 (262)
.......... .+.. ..++.+++|+++|.++|.+|.+.+|++++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~i~~f~iPl~ii~~~Y~~I~~~l~~~~~ 221 (323)
T PHA02834 176 FNDYHENFSWSAFFNFEINIFGIVIPLIILIYCYSKILYTLKNCKN 221 (323)
T ss_pred ccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3222211111 1121 12456789999999999999999987653
No 7
>KOG4220|consensus
Probab=99.95 E-value=2.4e-29 Score=208.98 Aligned_cols=192 Identities=19% Similarity=0.265 Sum_probs=159.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccccCc-
Q psy12217 59 NWALRVSVWFVAIAALVGNLAVLLVLISSRFRMTVPKFLMCNLAFADFCMGLYLIMIAIMDVRSIGDYFNHAIYWQRGM- 137 (262)
Q Consensus 59 ~~~~~~~~~~i~~~g~~gN~~vl~~~~~~~~~~~~~~~~l~nLaiaDll~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~- 137 (262)
..+..++...+.++.++||++|++.+.-+|++++..|+|+++||+||++.+.+.++....... -+.|..|.
T Consensus 30 ~v~i~~v~~~lsLVTv~GNlLVmiSfKvnrqLqTVnNYfLfSLAcADliIG~~SMnl~t~Y~l--------mg~W~LG~~ 101 (503)
T KOG4220|consen 30 VVFIVVVTGSLSLVTVVGNLLVMISFKVNRQLQTVNNYFLFSLACADLIIGAFSMNLYTTYTL--------MGYWPLGPL 101 (503)
T ss_pred EEeeehhhhHHHHHhhhccEEEEEEEEecceeeeecceeehHHHHhhhhhheeechHHHHHHH--------HcccccchH
Confidence 455667778889999999999999999899999999999999999999999998887764332 25899999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccchhhHHHHHHHHHHHHHHHhhhcceeccCC-----CCce
Q psy12217 138 GCQMAGFLTVFSSVLSIFTLTVITCERWYTITYAIHLNRRLKLSTATKIMVVGWVYSIAMAALPLFDVSNY-----SKTS 212 (262)
Q Consensus 138 ~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~P~~~~~~~~~~~~~~~~~~~W~~s~~~~~~~~~~~~~~-----~~~~ 212 (262)
+|.++..+.++...+|++.++.|++|||..|.+|+.|+.++|.||+..+++..|++|+++..|..+.|... .+.+
T Consensus 102 ~CdlWLalDYvaSNASVmNLLiISFDRYFsVTrPLtYrakRTtkrA~~MI~~AW~iSfiLWaPaIl~WqyivGkrTv~~~ 181 (503)
T KOG4220|consen 102 VCDLWLALDYVASNASVMNLLIISFDRYFSVTRPLTYRAKRTTKRAGLMIGAAWVLSFVLWAPAILFWQYIVGKRTVPDG 181 (503)
T ss_pred HHHHHHHHHHHhhhhhhhhhheeeeecceeecccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhHhheeeeecCCC
Confidence 89999999999999999999999999999999999999999999999999999999999984544444432 2456
Q ss_pred EEeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q psy12217 213 ICLPMKNTNSTDSAYLIFLLLFNGLAFWMICACYARMYSSIRGGTEGV 260 (262)
Q Consensus 213 ~C~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~~~~ 260 (262)
.|....-+...- . .-..++.|.+|..+|.++|.+|++..+++.|..
T Consensus 182 eC~iQFlsnp~i-T-fGTAiAAFYlPVtiM~~LY~rIyret~kR~k~~ 227 (503)
T KOG4220|consen 182 ECYIQFLSNPAI-T-FGTAIAAFYLPVTIMTILYWRIYRETRKRQKEL 227 (503)
T ss_pred ceEEEeecCcee-e-hhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 786544432221 1 123345578999999999999999999987754
No 8
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=99.94 E-value=1.2e-25 Score=192.63 Aligned_cols=191 Identities=20% Similarity=0.286 Sum_probs=152.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccccCc
Q psy12217 58 GNWALRVSVWFVAIAALVGNLAVLLVLISSRFRMTVPKFLMCNLAFADFCMGLYLIMIAIMDVRSIGDYFNHAIYWQRGM 137 (262)
Q Consensus 58 ~~~~~~~~~~~i~~~g~~gN~~vl~~~~~~~~~~~~~~~~l~nLaiaDll~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 137 (262)
.+.+..+++.+++++|++||+++++++.++ ++|++.|+++.|||++|++.++..++.... . ...+|.+|+
T Consensus 39 ~~~~~~~~~~~i~~~gl~gN~lvl~~~~~~-~~~~~~~~ll~~laisDll~~~~~~~~~~~-~--------~~~~~~~~~ 108 (335)
T PHA03087 39 NSTILIVVYSTIFFFGLVGNIIVIYVLTKT-KIKTPMDIYLLNLAVSDLLFVMTLPFQIYY-Y--------ILFQWSFGE 108 (335)
T ss_pred hhhHHHHHHHHHHHHHHHhhHhEEeeehhc-cccCchHHHHHHHHHHHHHHHHhHHHHHHH-H--------hCCCCCCCc
Confidence 466788899999999999999999999877 889999999999999999887765544321 1 123688888
Q ss_pred -cchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccchhhHHHHHHHHHHHHHHHhhhcceeccC--CCCceEE
Q psy12217 138 -GCQMAGFLTVFSSVLSIFTLTVITCERWYTITYAIHLNRRLKLSTATKIMVVGWVYSIAMAALPLFDVSN--YSKTSIC 214 (262)
Q Consensus 138 -~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~P~~~~~~~~~~~~~~~~~~~W~~s~~~~~~~~~~~~~--~~~~~~C 214 (262)
.|++..++...+..+|++++++||+|||++|++|.+|+...++|++..+++++|+++++.+.|+...... ..+...|
T Consensus 109 ~~C~~~~~~~~~~~~~S~~~l~~iaidRy~aI~~p~~~~~~~~~~~~~~~~~~iWl~~~~~~~p~~~~~~~~~~~~~~~C 188 (335)
T PHA03087 109 FACKIVSGLYYIGFYNSMNFITVMSVDRYIAIVHPVKSNKINTVKYGYIVSLVIWIISIIETTPILFVYTTKKDHETLIC 188 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccchhhhHHHHHHHHHHHHHHhccHhheeeeeccCCCceE
Confidence 8999999999999999999999999999999999999888999999999999999999988766554432 2344567
Q ss_pred eecCCCCCCc-hhHH-H-HHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy12217 215 LPMKNTNSTD-SAYL-I-FLLLFNGLAFWMICACYARMYSSIRGGTE 258 (262)
Q Consensus 215 ~~~~~~~~~~-~~~~-~-~~~~~~~ip~~ii~~~y~~I~~~l~~~~~ 258 (262)
...+...... ..+. . ...+.+++|+++++++|.++.+.+|++++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~i~~~l~~~~~ 235 (335)
T PHA03087 189 CMFYNNKTMNWKLFINFEINIIGMLIPLTILLYCYSKILITLKGINK 235 (335)
T ss_pred EecCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 6655432222 1111 1 23455789999999999999999987753
No 9
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=99.93 E-value=6.8e-26 Score=185.42 Aligned_cols=177 Identities=29% Similarity=0.490 Sum_probs=149.3
Q ss_pred HHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccccCc-cchhhHHHHHHHHHHHH
Q psy12217 76 GNLAVLLVLISSRFRMTVPKFLMCNLAFADFCMGLYLIMIAIMDVRSIGDYFNHAIYWQRGM-GCQMAGFLTVFSSVLSI 154 (262)
Q Consensus 76 gN~~vl~~~~~~~~~~~~~~~~l~nLaiaDll~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~-~C~~~~~~~~~~~~~s~ 154 (262)
||.++++++.++|++|++.++++.|||++|++.++..+|........ ++|..++ .|++..++..++..++.
T Consensus 1 GN~lvi~~~~~~~~~~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~--------~~~~~~~~~C~~~~~~~~~~~~~s~ 72 (257)
T PF00001_consen 1 GNILVILVILRSKRLRTPSNILLLNLAVADLLVGLFCIPFYIYSLLF--------DDWIFSSFLCRIFGFLFYFSSFSSI 72 (257)
T ss_dssp HHHHHHHHHHHSGGG-SHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH--------SSCTSHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhehhhhhhhccCCChhHHHHHHHHHHHHhhcccccccccccccc--------ccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999988887755442 4688888 89999999999999999
Q ss_pred HHHHHHHHHHHhhhhcccccccccchhhHHHHHHHHHHHHHHHhhhcceeccCC---CC-ceEEeecCCCCCCchhHHHH
Q psy12217 155 FTLTVITCERWYTITYAIHLNRRLKLSTATKIMVVGWVYSIAMAALPLFDVSNY---SK-TSICLPMKNTNSTDSAYLIF 230 (262)
Q Consensus 155 ~~l~~isidRy~~i~~P~~~~~~~~~~~~~~~~~~~W~~s~~~~~~~~~~~~~~---~~-~~~C~~~~~~~~~~~~~~~~ 230 (262)
++++++++|||++|++|.+|++..++|++...++++|+++++.+.++.++.+.. .+ ...|............+...
T Consensus 73 ~~~~~is~dRy~~i~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~ 152 (257)
T PF00001_consen 73 FSLVAISIDRYLAICHPLRYRRIRTRRRARIIIILIWIISFLISLPPLFFSWVYFVSDGSQSFCFIDFSSSSSQIYFIYF 152 (257)
T ss_dssp HHHHHHHHHHHHHHHSHHTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEESTCCCEEEEESCSSSHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999999999999999998886643221 12 56897765554422344455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q psy12217 231 LLLFNGLAFWMICACYARMYSSIRGGTEGV 260 (262)
Q Consensus 231 ~~~~~~ip~~ii~~~y~~I~~~l~~~~~~~ 260 (262)
..+.+++|+++++++|.++.+.+||++++.
T Consensus 153 ~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~ 182 (257)
T PF00001_consen 153 FIVFFILPLIIILICYIRILRKLRRQRKRI 182 (257)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred cccccccceeeeeeeccccccccccccccc
Confidence 566778999999999999999999988754
No 10
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=99.68 E-value=3.2e-16 Score=129.15 Aligned_cols=138 Identities=17% Similarity=0.265 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccccCccchhhHHHHHHHH
Q psy12217 71 IAALVGNLAVLLVLISSRFRMTVPKFLMCNLAFADFCMGLYLIMIAIMDVRSIGDYFNHAIYWQRGMGCQMAGFLTVFSS 150 (262)
Q Consensus 71 ~~g~~gN~~vl~~~~~~~~~~~~~~~~l~nLaiaDll~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~C~~~~~~~~~~~ 150 (262)
++|++||..++.+++++|++|++.+++++.+|++|++.++...+.....+. ........|-...+...++.
T Consensus 2 ~ig~~gN~~~i~~~~~~~~Lrs~~~~li~~~~~~d~~~~~~~~~~~~~~~~---------~~~i~~~~Cf~~~~~~~f~~ 72 (257)
T PF10320_consen 2 IIGLFGNLLLIILIFRNKSLRSPCYILICILCFADLICLLGTLPFMLFLFR---------DHQITRSECFWQIFFYIFFQ 72 (257)
T ss_pred EEEEEccHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhHHHHHHHHHh---------heeccHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999998888877763321 01111127999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcccccccccchhhHHHHHHHHHHHHHHHhhhcceeccCCCCceEEeecC
Q psy12217 151 VLSIFTLTVITCERWYTITYAIHLNRRLKLSTATKIMVVGWVYSIAMAALPLFDVSNYSKTSICLPMK 218 (262)
Q Consensus 151 ~~s~~~l~~isidRy~~i~~P~~~~~~~~~~~~~~~~~~~W~~s~~~~~~~~~~~~~~~~~~~C~~~~ 218 (262)
..+...+++|++||++||+.|.+|+...+++..........+.+.......+.. .+.+....|.+..
T Consensus 73 ~~qs~~~l~i~iDr~iaV~~P~~Y~~~~~~~y~~~~~~~~~~~s~~~~~~~~~~-~~~~~~~~C~pp~ 139 (257)
T PF10320_consen 73 CAQSVIMLAIAIDRLIAVCFPLRYRTISTRKYLIILLIFPVIYSIFFTVIGFLY-RDDETIVICNPPL 139 (257)
T ss_pred HHHHHHHHHHHhhheeeEeehhhhhhcccccchhhHhHHHHHHHHHHHhheeEe-cCCcccccCCCcc
Confidence 999999999999999999999999998888866666666666666654333332 2333567896643
No 11
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=99.43 E-value=6.9e-12 Score=104.55 Aligned_cols=127 Identities=13% Similarity=0.264 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccccCc-cch-hhHHHH
Q psy12217 69 VAIAALVGNLAVLLVLISSRFRMTVPKFLMCNLAFADFCMGLYLIMIAIMDVRSIGDYFNHAIYWQRGM-GCQ-MAGFLT 146 (262)
Q Consensus 69 i~~~g~~gN~~vl~~~~~~~~~~~~~~~~l~nLaiaDll~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~-~C~-~~~~~~ 146 (262)
+.++|++.|.+++..+.+.+++|++.+.+-.+.|++|.+.++....+..-.... +. .. ..+ ... +.+...
T Consensus 3 ~s~~G~~~N~~v~~~~~~~~~~~~sF~~l~~~~a~~n~i~~~~~l~~~~P~~~~-~~------~~-~~~~~~s~~~g~~~ 74 (274)
T PF10328_consen 3 ISIIGIILNWLVFIIIFKLKSLRNSFGILCASQAIANIIICLIFLFWVVPMTLL-DI------SF-LPSSLNSIIFGFIG 74 (274)
T ss_pred eeHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cc------cc-CchHHHHHHHHHHH
Confidence 567899999999999999999999999999999999999988665444322221 11 11 111 233 447788
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccccccccchhhHHHHHHHHHHHHHHHhhhcce
Q psy12217 147 VFSSVLSIFTLTVITCERWYTITYAIHLNRRLKLSTATKIMVVGWVYSIAMAALPLF 203 (262)
Q Consensus 147 ~~~~~~s~~~l~~isidRy~~i~~P~~~~~~~~~~~~~~~~~~~W~~s~~~~~~~~~ 203 (262)
..+...+..+-++||++|+.++..|.+|++..+.+.+..++++.|++++....++..
T Consensus 75 ~~~y~~~~~~~~liaiNRf~ai~fP~~y~~~fs~~~T~~~i~~~~~~~~~~~~~~~~ 131 (274)
T PF10328_consen 75 MFCYFIGPLSHLLIAINRFCAIFFPFKYKKIFSFKNTIILIAFIWLLSIIISTILYF 131 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHheeeeHHHHHhHcCccceehhhhHHHHHHHHHHHHhhh
Confidence 888889999999999999999999999999999999999999999999976655544
No 12
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.
Probab=99.34 E-value=1.7e-10 Score=91.16 Aligned_cols=182 Identities=15% Similarity=0.156 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHHHHHHHh-hcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccccCccchhhHHHH
Q psy12217 68 FVAIAALVGNLAVLLVLIS-SRFRMTVPKFLMCNLAFADFCMGLYLIMIAIMDVRSIGDYFNHAIYWQRGMGCQMAGFLT 146 (262)
Q Consensus 68 ~i~~~g~~gN~~vl~~~~~-~~~~~~~~~~~l~nLaiaDll~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~C~~~~~~~ 146 (262)
+...+++++-..+++.+.. .+++++-.+.++.||.++|++.++.........+. .++....+..|...+++.
T Consensus 9 ~~s~lSlls~~~~l~~~~~~~~r~~~fR~~LIl~L~~aD~~qal~~~i~~~~~l~-------~~~i~~~s~~C~aqGf~~ 81 (201)
T PF11710_consen 9 VISALSLLSSLAVLYLFFFITYRRRSFRHQLILNLLLADFIQALAFLISPIRWLA-------RGGIIAPSPFCQAQGFFL 81 (201)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cCCeeCCCCchhhhHHHH
Confidence 3444444444444444433 24556666789999999999999887663332211 112223334899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccccc---------ccchhhHHHHHHHHHHHHHHHhhhcceeccCCC-CceEEee
Q psy12217 147 VFSSVLSIFTLTVITCERWYTITYAIHLNR---------RLKLSTATKIMVVGWVYSIAMAALPLFDVSNYS-KTSICLP 216 (262)
Q Consensus 147 ~~~~~~s~~~l~~isidRy~~i~~P~~~~~---------~~~~~~~~~~~~~~W~~s~~~~~~~~~~~~~~~-~~~~C~~ 216 (262)
..+..++-+...+||++-|+.+.+|...++ ...+........+.|++...++... .+.+.|. .+.+|..
T Consensus 82 q~g~~~sd~~ilaIAihT~l~v~~~~~~~~~~~~~~~gl~~~~~~v~~~~~~~~~~~~~la~i~-~~~~~Y~~~g~WCWi 160 (201)
T PF11710_consen 82 QVGDEASDLWILAIAIHTFLIVFRPNWKRKRSKNVEGGLYPYRYWVWVIWILVPLLLASLAFIG-LGGPGYGPAGAWCWI 160 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCccccccccccccceEEeeeeeehHHHHHHHHHHHHHHhc-cccCcccccCcEEEE
Confidence 999999999999999999999999822100 0111223333335555554444332 1123333 4679966
Q ss_pred cCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q psy12217 217 MKNTNSTDSAYLIFLLLFNGLAFWMICACYARMYSSIRGGTEGV 260 (262)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~~~~ 260 (262)
..... ..-.....+.-++-.+.+++.|..|+..+||+.|++
T Consensus 161 ~~~~~---~~Rl~l~y~~~~~~~~~~i~iY~~if~~lrr~~~~~ 201 (201)
T PF11710_consen 161 PSRYE---WYRLWLHYIWRFIIIFAIIIIYIAIFFYLRRRIRRI 201 (201)
T ss_pred CCCcH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Confidence 43332 222333344446777888899999999999998874
No 13
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].
Probab=99.31 E-value=5.5e-11 Score=101.25 Aligned_cols=190 Identities=13% Similarity=0.140 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCC-chhHHHHHHHHHHHHHHHHHHHHHHhhhhhcc--ccccccccccccCc-cchhhH
Q psy12217 68 FVAIAALVGNLAVLLVLISSRFRM-TVPKFLMCNLAFADFCMGLYLIMIAIMDVRSI--GDYFNHAIYWQRGM-GCQMAG 143 (262)
Q Consensus 68 ~i~~~g~~gN~~vl~~~~~~~~~~-~~~~~~l~nLaiaDll~~~~~~~~~~~~~~~~--~~~~~~~~~w~~~~-~C~~~~ 143 (262)
++.++|+++|.+-+.++.| |.+| ++.|.++..+|++|++..+...+......... +..-... ...... ...+..
T Consensus 5 ~~~~~g~~~N~~h~~VLtr-k~mR~~~in~~l~~Iai~Dl~~~~~~~~~~~~~~~~~~~~~~C~~~-~sy~~~~~~~~~~ 82 (318)
T PF10324_consen 5 ILSIFGLFINIFHLIVLTR-KSMRSSSINILLIGIAICDLLYMLSILIWELFFFIIFYEDDECIPP-YSYFWAYFKLIME 82 (318)
T ss_pred EEeHHHHHHHHHHhhhcCC-hhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCc-ccHHHHHHHHHHH
Confidence 3567999999999999974 4555 58899999999999999888877776544321 0000000 000111 234567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcccccc--cccchhhHHHHHHHHHHHHHHHhhhcceeccC------CCCceEEe
Q psy12217 144 FLTVFSSVLSIFTLTVITCERWYTITYAIHLN--RRLKLSTATKIMVVGWVYSIAMAALPLFDVSN------YSKTSICL 215 (262)
Q Consensus 144 ~~~~~~~~~s~~~l~~isidRy~~i~~P~~~~--~~~~~~~~~~~~~~~W~~s~~~~~~~~~~~~~------~~~~~~C~ 215 (262)
.+...+...|.|..++||+.|++++.+|++.+ ...+.|.+...+..+.+.+.+...+..+..+- ..+...|.
T Consensus 83 ~l~~~~~~~S~WL~V~mA~iR~l~i~~p~~~~~~~l~~~k~~~~~i~~v~~~s~~~~~~~~~~~~i~~~~~~~~p~~~C~ 162 (318)
T PF10324_consen 83 SLSDIFRRISIWLGVLMALIRYLSIKFPMSSRFQKLSKPKFAIIVILIVFIISFLFSIPYFFRYKIVEVSDPWVPPPNCS 162 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeeeeehHHHHHHHHHHHHHhhceEEEEeccccccCCCcee
Confidence 88999999999999999999999999998753 35567888888888889988887665543322 12345685
Q ss_pred ecCC---CCCCc----h-----------hHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy12217 216 PMKN---TNSTD----S-----------AYLIFL-LLFNGLAFWMICACYARMYSSIRGGTEG 259 (262)
Q Consensus 216 ~~~~---~~~~~----~-----------~~~~~~-~~~~~ip~~ii~~~y~~I~~~l~~~~~~ 259 (262)
.... ...+. . .+...- ++.-++|.++..+..+.+.+.+|+.+|+
T Consensus 163 ~~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~gi~~kiiP~il~~ilti~Li~~Lrk~~~~ 225 (318)
T PF10324_consen 163 GFPENYTFPRYMLNISELFTENDCLFFRIYFFIDGIFFKIIPCILLPILTILLIIELRKAKKR 225 (318)
T ss_pred eccccccccccchhhhhhhhhhHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHhccHh
Confidence 2211 11110 0 011111 1224789999999999998888876654
No 14
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=99.24 E-value=7.9e-10 Score=93.21 Aligned_cols=194 Identities=13% Similarity=0.133 Sum_probs=127.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH---HhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccccc
Q psy12217 59 NWALRVSVWFVAIAALVGNLAVLLVL---ISSRFRMTVPKFLMCNLAFADFCMGLYLIMIAIMDVRSIGDYFNHAIYWQR 135 (262)
Q Consensus 59 ~~~~~~~~~~i~~~g~~gN~~vl~~~---~~~~~~~~~~~~~l~nLaiaDll~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 135 (262)
+.+..++..+..++|++||+.++.+. +++++.-+|.+..+.+||+++++.............+..+ .+..
T Consensus 6 ~~i~~~i~~~~~~~Gi~~N~FI~~vn~~~w~k~~~l~~~d~IL~~La~sr~~l~~~~~~~~~~~~~~~~-------~~~~ 78 (303)
T PF05296_consen 6 EIIFLIILVVEFIIGILGNGFIVLVNCSDWVKSRKLSPSDQILTSLAISRILLQWVILLNSFLSFFFPN-------IYFS 78 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcch-------hhhh
Confidence 45567778888999999999998886 4455666899999999999999988776665554443211 1222
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccc-cccch---hhHHHHHHHHHHHHH--HHhhhcceeccCCC
Q psy12217 136 GMGCQMAGFLTVFSSVLSIFTLTVITCERWYTITYAIHLN-RRLKL---STATKIMVVGWVYSI--AMAALPLFDVSNYS 209 (262)
Q Consensus 136 ~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~P~~~~-~~~~~---~~~~~~~~~~W~~s~--~~~~~~~~~~~~~~ 209 (262)
+..++...++..+....|.|..+++++--++.|++..+.- .+.++ +....++.+.++.++ ... .|........
T Consensus 79 ~~~~~~~~~~~~f~~~~s~W~tt~LsvfYcvKI~~fs~~~Fl~LK~rI~~~v~~lLl~s~l~s~~~~~~-~~~~~~~~~~ 157 (303)
T PF05296_consen 79 ENVYKIIDFLWMFSNSSSLWFTTWLSVFYCVKIANFSHPFFLWLKRRISKVVPWLLLGSLLISFLNLLS-IPLFIDNHIN 157 (303)
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHheeeecCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhheeeeec
Confidence 2378889999999999999999999999999998754421 11121 233455677777777 333 2222221111
Q ss_pred -----CceEEeecCCCCCCchhHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q psy12217 210 -----KTSICLPMKNTNSTDSAYLIF-LLLFNGLAFWMICACYARMYSSIRGGTEGV 260 (262)
Q Consensus 210 -----~~~~C~~~~~~~~~~~~~~~~-~~~~~~ip~~ii~~~y~~I~~~l~~~~~~~ 260 (262)
..+.+............+... ..+..++|+++++++...+..-++||.||+
T Consensus 158 ~~~~~~~~N~t~~~~~~~~~~~~~~~~~~~~~~lPf~i~l~s~~lli~SL~rH~r~M 214 (303)
T PF05296_consen 158 NNNTNNSRNSTSNFQESKSSYFYFFILFNLGSFLPFLIFLVSSILLIFSLWRHMRRM 214 (303)
T ss_pred cccccCCCcceEEeecchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 111111111111122222222 236678999999999999999999998875
No 15
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=99.21 E-value=2.7e-09 Score=89.38 Aligned_cols=143 Identities=15% Similarity=0.170 Sum_probs=110.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccccCccc
Q psy12217 60 WALRVSVWFVAIAALVGNLAVLLVLISSRFRMTVPKFLMCNLAFADFCMGLYLIMIAIMDVRSIGDYFNHAIYWQRGMGC 139 (262)
Q Consensus 60 ~~~~~~~~~i~~~g~~gN~~vl~~~~~~~~~~~~~~~~l~nLaiaDll~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~C 139 (262)
....++..+..+++++|.++++..+++.|++|++.+-++.-++++|++..+........ ...-..+..|
T Consensus 7 ~~~~~i~~~~s~lSllGclfiI~tf~~~k~~r~~~~rli~yl~~~~ll~~v~~~~~~~~-----------~~~~~~s~lC 75 (303)
T PF05462_consen 7 RTLYAIELVASVLSLLGCLFIIITFCLFKRLRKPINRLIFYLSIANLLTNVASMIMTLS-----------PSAGENSFLC 75 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHhc-----------ccCCCCCcch
Confidence 34555666778899999999999999999999999999999999999987655443321 0011112379
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccchhhHHHHHHHHHHHHHHHhhhcceeccCCCCceEEeec
Q psy12217 140 QMAGFLTVFSSVLSIFTLTVITCERWYTITYAIHLNRRLKLSTATKIMVVGWVYSIAMAALPLFDVSNYSKTSICLPM 217 (262)
Q Consensus 140 ~~~~~~~~~~~~~s~~~l~~isidRy~~i~~P~~~~~~~~~~~~~~~~~~~W~~s~~~~~~~~~~~~~~~~~~~C~~~ 217 (262)
.+++++..++..++.+..++||++=|+.+++... ..+|.-....+++|.++++.+..|+........+.+|...
T Consensus 76 ~~Qafliq~f~~as~lWt~~iA~nly~~~~~~~~----~~~k~e~~Y~l~~wGiPli~a~i~l~~~~~g~~G~WCWI~ 149 (303)
T PF05462_consen 76 QFQAFLIQFFMLASFLWTLCIAFNLYLTFVKRYD----ELEKLEKYYHLVCWGIPLIPAVIPLIGNDYGPAGNWCWIK 149 (303)
T ss_pred hhHhHHHHHhhHHHHHHHHHHHHHhhheeEEcCc----cHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCceeec
Confidence 9999999999999999999999999999886432 2456667788999999999988777644333345689664
No 16
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=98.95 E-value=3.5e-09 Score=88.56 Aligned_cols=180 Identities=13% Similarity=0.236 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHHHHHHhhcC----CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhc--cccccccccccccCccchhhH
Q psy12217 70 AIAALVGNLAVLLVLISSRF----RMTVPKFLMCNLAFADFCMGLYLIMIAIMDVRS--IGDYFNHAIYWQRGMGCQMAG 143 (262)
Q Consensus 70 ~~~g~~gN~~vl~~~~~~~~----~~~~~~~~l~nLaiaDll~~~~~~~~~~~~~~~--~~~~~~~~~~w~~~~~C~~~~ 143 (262)
.++.++-...++.++.+.|+ .+++.+.++.+-+++|++..+............ .+.+... ++| .-++..
T Consensus 5 ~~~tlply~~il~~l~~~r~~~~~~~~~Fy~l~~~~~iaDi~~~~~~~~~~~~~~~~~~~~f~~~~-~~~----~~~~~~ 79 (283)
T PF10323_consen 5 SIVTLPLYIFILYCLLKLRKRSKTFKSTFYTLLIQHCIADILSMLFYFLLQRFRAYGFFNDFYFSY-QTY----YAAIYY 79 (283)
T ss_pred EeehHHHHHHHHHHHHHcccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh-cch----hHHHHH
Confidence 34556677778777776554 358889999999999999888766555543331 1111111 111 245666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccc-ccccccchhhHHHHHHHHHHHHHHHhhhcceeccCC--CCceEEeecCCC
Q psy12217 144 FLTVFSSVLSIFTLTVITCERWYTITYAI-HLNRRLKLSTATKIMVVGWVYSIAMAALPLFDVSNY--SKTSICLPMKNT 220 (262)
Q Consensus 144 ~~~~~~~~~s~~~l~~isidRy~~i~~P~-~~~~~~~~~~~~~~~~~~W~~s~~~~~~~~~~~~~~--~~~~~C~~~~~~ 220 (262)
...+..........+.+|++||.+|++|. ++.+..++.+...++++-|+.+++.+ .|++...+. ++... .....+
T Consensus 80 ~~~y~~~~~~~~gi~lls~nR~~ai~~P~~~~~~~~~~~~~~~i~~i~wi~p~li~-~~~~~~~~~~f~~~~~-~~~~~d 157 (283)
T PF10323_consen 80 NIAYYFLYIQCIGIVLLSLNRYLAICFPTSRHTKFWQPAKIWIIILIQWIPPLLIS-LPFFFDTDFYFDNEEN-MSLFVD 157 (283)
T ss_pred HHHHHHHHHHHHhHHHHHHhhhheEEeecHHHhhhccccchhheeeeeehhhhhhe-eeeeccCceeeecccc-eeeecC
Confidence 77788888999999999999999999999 77777788899999999999999998 445443332 11111 111111
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy12217 221 NSTDSAYLIFLLLFNGLAFWMICACYARMYSSIRGG 256 (262)
Q Consensus 221 ~~~~~~~~~~~~~~~~ip~~ii~~~y~~I~~~l~~~ 256 (262)
............+...+-.+..+++|..++..+||+
T Consensus 158 ~~~~~~~~~~~~~~~~~~cv~~iv~Y~~i~~~iRk~ 193 (283)
T PF10323_consen 158 PEFIQRNFLIAFIFVSVTCVICIVCYGIIFIFIRKR 193 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111111222223334556667788899999998854
No 17
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=98.86 E-value=3.5e-07 Score=77.12 Aligned_cols=186 Identities=13% Similarity=0.056 Sum_probs=118.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccccCc
Q psy12217 58 GNWALRVSVWFVAIAALVGNLAVLLVLISSRFRMTVPKFLMCNLAFADFCMGLYLIMIAIMDVRSIGDYFNHAIYWQRGM 137 (262)
Q Consensus 58 ~~~~~~~~~~~i~~~g~~gN~~vl~~~~~~~~~~~~~~~~l~nLaiaDll~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 137 (262)
.+..+++.+.+.+++-.+.+...+.++.+++..|.+.+-.+.-|++.|++.....-...-... ..|.
T Consensus 31 ~~p~~G~~~~~~g~~~~~lY~p~~~~i~~~~~~k~~~ykiM~~L~i~Di~~l~~~si~tG~l~-------------i~G~ 97 (313)
T PF10321_consen 31 KRPILGIYFLIFGIIIIILYIPCLIAIFKKKLFKMSCYKIMFFLAIFDIIQLFINSIITGILA-------------IFGA 97 (313)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHhhhhhhhHHH-------------hcCc
Confidence 356688888888888888999999999888878899999999999999988765433222111 1233
Q ss_pred -cchh------hHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccchhhHHHHHHHHH---HHHHHHhhhcceeccC
Q psy12217 138 -GCQM------AGFLTVFSSVLSIFTLTVITCERWYTITYAIHLNRRLKLSTATKIMVVGW---VYSIAMAALPLFDVSN 207 (262)
Q Consensus 138 -~C~~------~~~~~~~~~~~s~~~l~~isidRy~~i~~P~~~~~~~~~~~~~~~~~~~W---~~s~~~~~~~~~~~~~ 207 (262)
.|+. .+.+...+..++...-..++++|..-+..|......+.+++....+.... +.+.++ .+|.....+
T Consensus 98 vfC~~P~~~~i~G~~~~~~W~~~c~~~i~LainR~~~l~~~~~~~~~F~g~~~~~~l~~~~iY~~y~~~f-T~pv~Fns~ 176 (313)
T PF10321_consen 98 VFCSYPRFIYIMGCIALGSWCGSCIICILLAINRCCELNFPFKLKFLFEGKRTYIVLFLPIIYGFYFSFF-TPPVLFNSE 176 (313)
T ss_pred cccCCchHhhhhhccchhhHHHHHHHHHHHHHHHHHHHhcchhhHHhhcCceEEeeehhHHHHHHHHHHH-cCcccCCCC
Confidence 4653 45566667778888889999999999998877655656666544433333 233333 355554332
Q ss_pred CCCceEEeecCC--CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy12217 208 YSKTSICLPMKN--TNSTDSAYLIFLLLFNGLAFWMICACYARMYSSIRGGTEG 259 (262)
Q Consensus 208 ~~~~~~C~~~~~--~~~~~~~~~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~~~ 259 (262)
+. .+-.+... +...+.+.........++-.+.+..+|..+...++++.|+
T Consensus 177 ~~--sw~fDP~i~~g~~~~~Y~N~~~~~nN~~~~~~t~~lY~~l~~~l~~k~~~ 228 (313)
T PF10321_consen 177 YM--SWFFDPMIFEGKSPELYSNIPHTFNNIIVVICTTFLYIYLCYYLIKKSKY 228 (313)
T ss_pred cc--eEecCccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 21 11111111 1112222233344445666677788888888888877554
No 18
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].
Probab=98.58 E-value=2.6e-05 Score=66.67 Aligned_cols=155 Identities=12% Similarity=0.075 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccccCc-cchhh
Q psy12217 64 VSVWFVAIAALVGNLAVLLVLISSRFRMTVPKFLMCNLAFADFCMGLYLIMIAIMDVRSIGDYFNHAIYWQRGM-GCQMA 142 (262)
Q Consensus 64 ~~~~~i~~~g~~gN~~vl~~~~~~~~~~~~~~~~l~nLaiaDll~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~-~C~~~ 142 (262)
.+-.++.++|+..++..++...+++..|.-..+++....++.++.++.-......++...- .....-+..... .|-+.
T Consensus 21 ~~~~~~s~~~~~~~~~~~~~~~~~~~~H~N~ril~~~~~~~~l~~~~~r~~~h~~~l~~~~-~~~~~Cd~~~~~~~C~~l 99 (324)
T PF10292_consen 21 IFNLLLSIIAFPVIIYALWKIRNSKLFHFNTRILFIVHCFSFLIHCTGRIILHTYDLYNYF-FPDDPCDMIPSTYRCFIL 99 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccCCCcccccchhHHHHH
Confidence 3445566777777777777777677788888899999999999888776555544443210 002222333344 69999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccchhhHHHHHHHHHHHHHHHhhhcceeccC-CCCceEEeecCCC
Q psy12217 143 GFLTVFSSVLSIFTLTVITCERWYTITYAIHLNRRLKLSTATKIMVVGWVYSIAMAALPLFDVSN-YSKTSICLPMKNT 220 (262)
Q Consensus 143 ~~~~~~~~~~s~~~l~~isidRy~~i~~P~~~~~~~~~~~~~~~~~~~W~~s~~~~~~~~~~~~~-~~~~~~C~~~~~~ 220 (262)
.....++......+..++.+||++|..+..+|.+. ++.-...+..+.|++++.....-...... ...-..|.....+
T Consensus 100 R~~~~~~~~~~~~t~v~l~IER~iAT~~~~~YE~~-~~~~Gi~l~~~qi~is~~~~~~~~~~~~~~~~~~~yC~~~~~~ 177 (324)
T PF10292_consen 100 RIPYNFGLFLVSFTTVSLVIERTIATFFSKSYEKS-GKWLGILLAFFQILISLLILYFVYSDEDFPNERMYYCQASSSS 177 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCC-CccHHHHHHHHHHHHHHHHHHHHHhhhhccCccceeeEEecCC
Confidence 99999999999999999999999999999999654 33444455555566655543222222111 2234578664444
No 19
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=98.46 E-value=1.4e-06 Score=71.32 Aligned_cols=162 Identities=14% Similarity=0.120 Sum_probs=108.2
Q ss_pred CCCchhHHHHHHHHHHHHHHHHH-HHHHHhhhhhccccccccccccccCc-cchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12217 89 FRMTVPKFLMCNLAFADFCMGLY-LIMIAIMDVRSIGDYFNHAIYWQRGM-GCQMAGFLTVFSSVLSIFTLTVITCERWY 166 (262)
Q Consensus 89 ~~~~~~~~~l~nLaiaDll~~~~-~~~~~~~~~~~~~~~~~~~~~w~~~~-~C~~~~~~~~~~~~~s~~~l~~isidRy~ 166 (262)
++.+|.+..+.+||++|+++.+. ..|.... .+.. + .+++ +||+..++..++...|+.+.+.+|+-.-+
T Consensus 6 ~r~kp~dlIl~hLa~aN~lvLl~rGip~~~~-~~~~--------~-~~~d~gCK~v~Y~~RV~RglSictTCLLSvfQAI 75 (265)
T PF03402_consen 6 HRLKPIDLILIHLALANILVLLSRGIPQTMA-FFGW--------K-FFDDIGCKIVFYIYRVARGLSICTTCLLSVFQAI 75 (265)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHhhHHHHHH-Hhhc--------c-cCCCceeeeeeeehHHhchhhHHhhhHHHHHhhE
Confidence 45678999999999999998876 4454322 2210 1 2356 89999999999999999999999994444
Q ss_pred hhhcccccc----cccchhhHHHHHHHHHHHHHHHhhhcc---eeccCCC------CceEEeecCCCCCCchhHHHHHHH
Q psy12217 167 TITYAIHLN----RRLKLSTATKIMVVGWVYSIAMAALPL---FDVSNYS------KTSICLPMKNTNSTDSAYLIFLLL 233 (262)
Q Consensus 167 ~i~~P~~~~----~~~~~~~~~~~~~~~W~~s~~~~~~~~---~~~~~~~------~~~~C~~~~~~~~~~~~~~~~~~~ 233 (262)
.| .|.... +....|.....+...|++-.++...-. .+..+.. ..+.|.....+......+.....+
T Consensus 76 tI-SP~~s~w~~lK~k~pk~i~~~~~~~Wilnlli~~~~~~~~~~~~n~t~~~~~~~~~yCs~~~~~~~~~~~~~~~~~~ 154 (265)
T PF03402_consen 76 TI-SPSNSRWAELKVKAPKYIGPSCLFCWILNLLININVLVYIIATPNSTNNNFTYSLGYCSSVPISYIVSSLFATLLSF 154 (265)
T ss_pred EE-ecCCchhhhhhhhcCCccccHHHHHHHHHHhhhcceeEEEEecCccccCceeecCCeEEEEecchhhhhhhhhHHHh
Confidence 44 343321 112334566678888999887653211 1111111 234685443333333345555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccC
Q psy12217 234 FNGLAFWMICACYARMYSSIRGGTEGVA 261 (262)
Q Consensus 234 ~~~ip~~ii~~~y~~I~~~l~~~~~~~a 261 (262)
.-++.+.+|......+...+.||+||+-
T Consensus 155 ~D~~fvgLM~~aSgyMV~~L~RH~q~Vq 182 (265)
T PF03402_consen 155 RDVLFVGLMIWASGYMVFLLYRHHQQVQ 182 (265)
T ss_pred hHHHHHHHHHhhhhhheeeeeecccccc
Confidence 5678889999999999999999999873
No 20
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].
Probab=98.22 E-value=0.00015 Score=61.00 Aligned_cols=134 Identities=14% Similarity=0.132 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcC-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc---cccccccccCc-c
Q psy12217 64 VSVWFVAIAALVGNLAVLLVLISSRF-RMTVPKFLMCNLAFADFCMGLYLIMIAIMDVRSIGDY---FNHAIYWQRGM-G 138 (262)
Q Consensus 64 ~~~~~i~~~g~~gN~~vl~~~~~~~~-~~~~~~~~l~nLaiaDll~~~~~~~~~~~~~~~~~~~---~~~~~~w~~~~-~ 138 (262)
++..+.+.+|++.|.+.++.+.++.. .-+...+++.|-|+.|++.++....... .....+.. ...+.=-..|+ .
T Consensus 3 i~~~~~~~~~~~~n~~Ll~~i~~~tp~~l~~~~~~l~~~~~~~~~~~~~~~~~q~-R~i~~~~~~~~~~~GpC~~~~~~~ 81 (292)
T PF10317_consen 3 IYHPIFFILGIILNILLLYLIIFKTPKSLRTYSILLLNTAIFDLISIISAFLTQP-RIIPNGTSIAVISYGPCRYFGPWF 81 (292)
T ss_pred EeHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccCCCCcEEEEeeecceecCcHH
Confidence 35678899999999999999876553 3467789999999999998876544332 22111110 00110011234 7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccchhhHHHHHHHHHHHHHHHhhhcce
Q psy12217 139 CQMAGFLTVFSSVLSIFTLTVITCERWYTITYAIHLNRRLKLSTATKIMVVGWVYSIAMAALPLF 203 (262)
Q Consensus 139 C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~P~~~~~~~~~~~~~~~~~~~W~~s~~~~~~~~~ 203 (262)
|.....+...+...+.+++..--.-||..+.++.. ++++....+...+..++........
T Consensus 82 C~~~y~~~~~~~~~s~~~i~~sf~yRy~iL~~~~~-----~~~~~i~~~~l~~~p~~~~~i~~~~ 141 (292)
T PF10317_consen 82 CFFCYHIMLHFSIHSGWSIILSFYYRYYILRNPSP-----SRKRIIFICILIYIPSFSMLIFFFF 141 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-----chhHHHHHHHHHHHHHHHHHHHHhc
Confidence 88888888888889999999999999999986422 6678888888888888877654444
No 21
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=98.04 E-value=2e-06 Score=70.34 Aligned_cols=138 Identities=10% Similarity=0.075 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccccc---Cccc
Q psy12217 63 RVSVWFVAIAALVGNLAVLLVLISSRFRMTVPKFLMCNLAFADFCMGLYLIMIAIMDVRSIGDYFNHAIYWQR---GMGC 139 (262)
Q Consensus 63 ~~~~~~i~~~g~~gN~~vl~~~~~~~~~~~~~~~~l~nLaiaDll~~~~~~~~~~~~~~~~~~~~~~~~~w~~---~~~C 139 (262)
..+..+-..+++++-.+++..+...|+.|+..+....||++++++..+......... ..... ++.|
T Consensus 4 ~~i~~vg~~~Si~~ll~~i~~~~~~r~lr~~~~~i~~~l~~sll~~~~~~l~~~~~~-----------~~~~~~~~~~~C 72 (242)
T PF00002_consen 4 SIISYVGCSLSIICLLLTIITYLLFRKLRSFRNKIHLNLCLSLLLANLSFLIGISQT-----------FSPISTTNHCLC 72 (242)
T ss_dssp HHHHHHHHH-----------------------------------------------------------------------
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHheehhhc-----------cccccccccccc
Confidence 344445556666676666666666677787778889999999998776654332100 01111 1259
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccchhhHHHHHHHHHHHHHHHhhhcceeccCCCCceEEe
Q psy12217 140 QMAGFLTVFSSVLSIFTLTVITCERWYTITYAIHLNRRLKLSTATKIMVVGWVYSIAMAALPLFDVSNYSKTSICL 215 (262)
Q Consensus 140 ~~~~~~~~~~~~~s~~~l~~isidRy~~i~~P~~~~~~~~~~~~~~~~~~~W~~s~~~~~~~~~~~~~~~~~~~C~ 215 (262)
+..+.+.+++..++...+.+.+++-|..+.++.. ..+++.....+..|.++++.........+...++..|.
T Consensus 73 ~~~a~~~hy~~la~f~Wm~~~~~~l~~~~~~~~~----~~~~~~~~~~~~gwg~P~~iv~i~~~~~~~~y~~~~CW 144 (242)
T PF00002_consen 73 RAIAILLHYFFLASFFWMLVEAFYLYRLLVKVFN----SSRRRFWWYYLIGWGIPALIVVISVAVNSDGYGNDNCW 144 (242)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred hhhhhHhHHHHHHHHHHHHHHHHHhheeEEEeec----ccchhhheeeeeeecCcceeeeeeeeeccccccccccc
Confidence 9999999999999999999999999999988633 22456667788899999988755544442333345673
No 22
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class a (Sra) from the Sra superfamily []. Sra receptors contain 6-7 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=97.98 E-value=0.0011 Score=56.59 Aligned_cols=112 Identities=14% Similarity=0.140 Sum_probs=76.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchh-HHHHHHHHHHHHHHHHHHHHH--HhhhhhccccccccccccccC
Q psy12217 60 WALRVSVWFVAIAALVGNLAVLLVLISSRFRMTVP-KFLMCNLAFADFCMGLYLIMI--AIMDVRSIGDYFNHAIYWQRG 136 (262)
Q Consensus 60 ~~~~~~~~~i~~~g~~gN~~vl~~~~~~~~~~~~~-~~~l~nLaiaDll~~~~~~~~--~~~~~~~~~~~~~~~~~w~~~ 136 (262)
.+...+..++.++++++....+-.++++.-.++.+ .+++.+|..+++=-....... .+...+. +.+..-+..+.
T Consensus 21 ~~~~~~~~~~~~~t~~~s~~Ai~~l~~ksif~~sTr~LL~~~l~~a~~Hq~~y~~~~~~~lyrsf~---~~~dpC~i~f~ 97 (328)
T PF02117_consen 21 RINQIFILIIIIITFIFSVFAIKKLWKKSIFSNSTRILLISNLLFANIHQISYAIIQIWSLYRSFF---YSDDPCSILFT 97 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCCeeeEee
Confidence 33445556677788888888888887666555444 577888888877554443222 1222221 22333355666
Q ss_pred c-cchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q psy12217 137 M-GCQMAGFLTVFSSVLSIFTLTVITCERWYTITYAIHL 174 (262)
Q Consensus 137 ~-~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~P~~~ 174 (262)
. .|........++.....+.-.++.+||.++-..|..+
T Consensus 98 ~~eC~~~~~~~~~~~~~~~~~q~aL~idRl~at~~~~~~ 136 (328)
T PF02117_consen 98 SSECFPYYYFYYFTNSGMIFIQFALTIDRLLATFFPKYY 136 (328)
T ss_pred cCceeeeehHHHHHHHHHHHHHHHHHHHHHHHHhchhhh
Confidence 6 7999999999999999999999999999999888654
No 23
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane
Probab=97.84 E-value=0.00042 Score=57.68 Aligned_cols=186 Identities=13% Similarity=0.150 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcC--C-CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhcc-cccccccccc-ccCc-cchh
Q psy12217 68 FVAIAALVGNLAVLLVLISSRF--R-MTVPKFLMCNLAFADFCMGLYLIMIAIMDVRSI-GDYFNHAIYW-QRGM-GCQM 141 (262)
Q Consensus 68 ~i~~~g~~gN~~vl~~~~~~~~--~-~~~~~~~l~nLaiaDll~~~~~~~~~~~~~~~~-~~~~~~~~~w-~~~~-~C~~ 141 (262)
+-++.|++.+..+++++.++|+ . +++.+.+...=++.|++.-+...+.. .+... ++.......+ ...+ ..++
T Consensus 6 ~Ygi~s~~l~~~~~~~i~~~~~~~~~~~sFy~l~~~d~~~ni~~~ln~~~~~--Rl~~~~~~~~~~~~~~~~~~~~~l~~ 83 (275)
T PF02118_consen 6 IYGIPSLILYIFILYVIWKSKKKSYFKSSFYRLYIMDLIMNILTYLNTWITL--RLPSYTPPFCPFFLPFFENPPFFLNI 83 (275)
T ss_pred hHHHHHHHHHHHHHHHHHHhccccccCCccHHHHHHHhHHHHHHHHHHHHHH--HhccccCccchhHHHHHcCCcHHHHH
Confidence 3467788889899999888777 3 56666666666666666544322221 11100 0000000111 1112 4777
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccchhhHHHHHHHHHHHHHHHhhhcceeccC---CCCceEEeecC
Q psy12217 142 AGFLTVFSSVLSIFTLTVITCERWYTITYAIHLNRRLKLSTATKIMVVGWVYSIAMAALPLFDVSN---YSKTSICLPMK 218 (262)
Q Consensus 142 ~~~~~~~~~~~s~~~l~~isidRy~~i~~P~~~~~~~~~~~~~~~~~~~W~~s~~~~~~~~~~~~~---~~~~~~C~~~~ 218 (262)
..++.....++...+...|+++|+-++..|.++.+.=+ |.....++++.++++... .+...... +.+++.-....
T Consensus 84 ~~~l~~~~~~~Q~~~~~~is~nR~t~v~~p~~~~~~W~-~~~~~~i~~i~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~ 161 (275)
T PF02118_consen 84 FYFLQYYFAYVQYLSTILISLNRFTSVLFPIRYEKFWK-RYYWIIIIIIFLLPFSFT-WNIFISPTYVVYDNGGFSYSYN 161 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHH-hhhhhheeeeeehhHHHH-HHHHccccEEEEECCceEEEEE
Confidence 88899999999999999999999999999998755333 333344555555554433 32222111 11221111111
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy12217 219 NTNSTDSAYLIFLLLFNGLAFWMICACYARMYSSIRGGTE 258 (262)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~~ 258 (262)
+.......+ ......+++-.++.++++....+++++.++
T Consensus 162 ~~~~~~~~~-~~~~~~~i~~~ii~i~~~~~~~~~l~~~~~ 200 (275)
T PF02118_consen 162 DTVSWASLS-IFSLIYFIIIIIITIITNIITYRRLRKLSK 200 (275)
T ss_pred eccchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 111111111 222333344555566667777777766543
No 24
>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. Srbc is a solo family amongst the superfamilies of chemoreceptors.
Probab=97.66 E-value=0.0041 Score=51.62 Aligned_cols=121 Identities=12% Similarity=0.040 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccccCc-cch
Q psy12217 62 LRVSVWFVAIAALVGNLAVLLVLISSRFRMTVPKFLMCNLAFADFCMGLYLIMIAIMDVRSIGDYFNHAIYWQRGM-GCQ 140 (262)
Q Consensus 62 ~~~~~~~i~~~g~~gN~~vl~~~~~~~~~~~~~~~~l~nLaiaDll~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~-~C~ 140 (262)
...+..+...+....|...+..+..+|+.+++.-.++---.+.|.+.+....+.......... .. +..... .=-
T Consensus 8 v~~i~i~~s~~~~~iN~~lL~~if~~Kk~kk~~l~LfY~Rf~~D~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~if 82 (273)
T PF10316_consen 8 VSIIGIIFSIITCLINFYLLYSIFYSKKKKKPDLSLFYFRFAIDVFYGFSVFIYLIYYILFSL---FP--EFLDYKNLIF 82 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCEEeeHHHHHHHHHHHHHHHHHHHHHHHHHh---Ch--hhhccccEEe
Confidence 344555667788899999999998777744555556666789999999887655554333100 00 011011 112
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccchhhHHHHH
Q psy12217 141 MAGFLTVFSSVLSIFTLTVITCERWYTITYAIHLNRRLKLSTATKIM 187 (262)
Q Consensus 141 ~~~~~~~~~~~~s~~~l~~isidRy~~i~~P~~~~~~~~~~~~~~~~ 187 (262)
..+................||+||..|+..|..|++.+++-......
T Consensus 83 ~~~~p~~~~~~iR~~l~~~Ia~dR~~A~~fPI~y~~~r~k~~~~~I~ 129 (273)
T PF10316_consen 83 YIGWPSSNLGSIRSILALIIALDRVFAVYFPIFYHNYRKKIPNFIII 129 (273)
T ss_pred ehhhhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCccccHHHHH
Confidence 34445555556777888999999999999999988766654444433
No 25
>KOG4193|consensus
Probab=97.50 E-value=0.0036 Score=57.59 Aligned_cols=135 Identities=14% Similarity=0.113 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccccCc---cchhhH
Q psy12217 67 WFVAIAALVGNLAVLLVLISSRFRMTVPKFLMCNLAFADFCMGLYLIMIAIMDVRSIGDYFNHAIYWQRGM---GCQMAG 143 (262)
Q Consensus 67 ~~i~~~g~~gN~~vl~~~~~~~~~~~~~~~~l~nLaiaDll~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~---~C~~~~ 143 (262)
.+-+.+++++=.+.+++++--|++++..+....||+++=++. -..... +.|..+. .|+..+
T Consensus 327 ~VG~~iSlvcL~lti~ty~~~~~l~~~~~~i~~~l~~~L~l~-~l~fL~---------------~~~~~~~~~~~C~~~a 390 (610)
T KOG4193|consen 327 TVGCIISLVCLLLTIATYLLFRKLQNDRTKIHINLCLCLFLA-ELLFLL---------------GIDRTSTSVVLCIAAA 390 (610)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-HHHHhc---------------ccccccCcccccHHHH
Confidence 344555666666666666666666665588888888882222 111111 1333332 599999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccchhhHHHHHHHHHHHHHHHhhhcceecc-C---CCCceEEeecCC
Q psy12217 144 FLTVFSSVLSIFTLTVITCERWYTITYAIHLNRRLKLSTATKIMVVGWVYSIAMAALPLFDVS-N---YSKTSICLPMKN 219 (262)
Q Consensus 144 ~~~~~~~~~s~~~l~~isidRy~~i~~P~~~~~~~~~~~~~~~~~~~W~~s~~~~~~~~~~~~-~---~~~~~~C~~~~~ 219 (262)
++.+++..+....+..++++-|+.++. ..+...+|+......+.|...++...+-..... . +...+.|.....
T Consensus 391 ~llhff~LaaF~Wm~leg~hl~~~~v~---vf~~~~~~~~l~~~~~gwg~Pavvv~Isa~~~~~~~~~~~~~~~CWl~~~ 467 (610)
T KOG4193|consen 391 ILLHFFFLAAFFWMLLEGFHLYLLLVE---VFRSRPRRRKLLYSLYGWGVPAVVVGVSALVDPDLEGQYGTPRVCWLDTQ 467 (610)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HhccccchHHHHHHHHHhhhhHHHHhheeEEeccCccccccCCceEEecC
Confidence 999999999999999999999996554 334445566666667999999888755544322 2 444556866444
Q ss_pred C
Q psy12217 220 T 220 (262)
Q Consensus 220 ~ 220 (262)
.
T Consensus 468 ~ 468 (610)
T KOG4193|consen 468 N 468 (610)
T ss_pred C
Confidence 3
No 26
>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans. The function of this family is unknown.
Probab=97.48 E-value=0.0026 Score=49.50 Aligned_cols=109 Identities=12% Similarity=0.123 Sum_probs=60.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccchhhHHHHHHHHHHHHHHHhhhcceeccCCCCceEEeec
Q psy12217 138 GCQMAGFLTVFSSVLSIFTLTVITCERWYTITYAIHLNRRLKLSTATKIMVVGWVYSIAMAALPLFDVSNYSKTSICLPM 217 (262)
Q Consensus 138 ~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~P~~~~~~~~~~~~~~~~~~~W~~s~~~~~~~~~~~~~~~~~~~C~~~ 217 (262)
.|.+..-+......+.-...+++|++||+.|++-.| .+.......-.++-+.-++.+ ..-+..++..++..|...
T Consensus 116 vCSflk~f~S~t~s~~~vip~aVAIyRy~~VV~k~r----l~~~f~v~v~~iit~~~~~~a-~~~~~~G~~t~NdiCa~L 190 (226)
T PF06681_consen 116 VCSFLKNFTSSTTSCAQVIPVAVAIYRYLIVVLKKR----LSVWFVVVVHVIITFPFIFYA-ILNFPFGEPTPNDICAIL 190 (226)
T ss_pred eehHHHhHHHHHhhhhccchhhhhhhhhheeeeccc----CCchHHHHHHHHHHHHHHHHH-HHhcccCCCCcCCeeeEE
Confidence 699887766666655556666899999999987433 232333333222222222222 223456677788899765
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy12217 218 KNTNSTDSAYLIFLLLFNGLAFWMICACYARMYSSIRG 255 (262)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~I~~~l~~ 255 (262)
.-........... ...+++ +.++.+..|.+.+||
T Consensus 191 ~fs~~~~~Vri~~---tl~l~l-fAVl~N~~i~~fvkk 224 (226)
T PF06681_consen 191 RFSKSMELVRISY---TLGLNL-FAVLLNFVILRFVKK 224 (226)
T ss_pred EEccchHHHHHHH---HhHHHH-HHHHHHHhHheeeec
Confidence 4433332221111 122333 334457778777776
No 27
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity.
Probab=97.30 E-value=0.046 Score=44.73 Aligned_cols=169 Identities=14% Similarity=0.256 Sum_probs=100.4
Q ss_pred HHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHH----HHHhhhhhccccccccccccccCccchhhHHHHHHHHH
Q psy12217 76 GNLAVLLVLISSRFRMTVPKFLMCNLAFADFCMGLYLI----MIAIMDVRSIGDYFNHAIYWQRGMGCQMAGFLTVFSSV 151 (262)
Q Consensus 76 gN~~vl~~~~~~~~~~~~~~~~l~nLaiaDll~~~~~~----~~~~~~~~~~~~~~~~~~~w~~~~~C~~~~~~~~~~~~ 151 (262)
|-.+++.++..++-++-+.-.++..|.++-.+.+.... |-.+..... ++...++.-.+..+...++.+
T Consensus 31 ~~Flv~~i~lW~~Fk~m~ffwFl~qlt~s~fi~S~lNl~inVPatlfsl~t--------~~~~~s~~f~~~Sy~idf~h~ 102 (305)
T PF04789_consen 31 GAFLVLSIILWSHFKPMKFFWFLTQLTISVFIISSLNLLINVPATLFSLIT--------KEFVQSELFIFMSYLIDFCHY 102 (305)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhheEeCcHHHHHhhh--------HHHhccchhhHHHHHHHHHHH
Confidence 44455555544555555678999999999988877654 333322221 122333345678889999999
Q ss_pred HHHHHHHHHHHHHHhhhhcccccccccchhhHHHHHHHHHHHHHHHhhhcce-----eccCCC--CceEEeecCC---CC
Q psy12217 152 LSIFTLTVITCERWYTITYAIHLNRRLKLSTATKIMVVGWVYSIAMAALPLF-----DVSNYS--KTSICLPMKN---TN 221 (262)
Q Consensus 152 ~s~~~l~~isidRy~~i~~P~~~~~~~~~~~~~~~~~~~W~~s~~~~~~~~~-----~~~~~~--~~~~C~~~~~---~~ 221 (262)
+-.++-..||++|....-.-.+-.+.+.+.-....+..+|++++..-..-.. .++... ..-.|..... .+
T Consensus 103 siLfsNlviaIqR~fVFFfr~~t~~~F~s~~iyiWL~~vWils~~v~~~l~~~nC~Y~y~~~~~~y~L~C~~~~~~v~~~ 182 (305)
T PF04789_consen 103 SILFSNLVIAIQRFFVFFFRNLTDKVFESPVIYIWLLLVWILSIGVVYSLMSNNCRYRYNKWSKHYQLNCETCNSVVDIS 182 (305)
T ss_pred HHHHHHHHHHHhhheeeeehhhhhhhccchHHHHHHHHHHHHHHHHHHHHHhCCCeeecccccccEEEEcCCCCeeEeeC
Confidence 9999999999999987653222234445677788899999999886532221 111111 2235743211 11
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12217 222 STDSAYLIFLLLFNGLAFWMICACYARMYSSI 253 (262)
Q Consensus 222 ~~~~~~~~~~~~~~~ip~~ii~~~y~~I~~~l 253 (262)
..+..-.+=..+.+.+|+.+.. .|+.+..++
T Consensus 183 ~P~~IqiiE~ilQ~~IPi~Il~-iYiAIIiKI 213 (305)
T PF04789_consen 183 PPRGIQIIEIILQFGIPIFILV-IYIAIIIKI 213 (305)
T ss_pred CCCchhHHHHHHHHhHHHHHHH-HHHHHHHHH
Confidence 1222223445667788865544 465555443
No 28
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.
Probab=97.26 E-value=0.0074 Score=51.09 Aligned_cols=195 Identities=11% Similarity=0.104 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCCchhHHHH---HHHHHHHHHHHHHHHHHHhhhhhccccccccc-ccccc
Q psy12217 61 ALRVSVWFVAIAALVGNLAVLLVLIS-SRFRMTVPKFLM---CNLAFADFCMGLYLIMIAIMDVRSIGDYFNHA-IYWQR 135 (262)
Q Consensus 61 ~~~~~~~~i~~~g~~gN~~vl~~~~~-~~~~~~~~~~~l---~nLaiaDll~~~~~~~~~~~~~~~~~~~~~~~-~~w~~ 135 (262)
.+...+-++++++++.|.+.++.++. +++..+-.++++ ....++|+-.+...-|..+.+... .|..+- .+| +
T Consensus 10 ~li~~~~~ig~iS~~~n~~~iyLi~fks~k~~~fry~ll~~Qi~~~l~di~~t~L~qpipLfP~~a--gy~~G~l~~~-f 86 (303)
T PF10327_consen 10 WLINYYHIIGVISFILNSLGIYLIIFKSPKLDNFRYYLLYFQISCTLTDIHLTFLMQPIPLFPIPA--GYCVGFLARY-F 86 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHheeEEEecCCccchhhHHHHHHHHHHHhhhhhhhhccchhhcceeE--EEEEeehhhc-C
Confidence 35567778999999999999998754 444444333322 456788888888877777765542 122110 111 1
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccchhhHHHHHHHHHHHHHHHhhhcce--eccCCC----
Q psy12217 136 GMGCQMAGFLTVFSSVLSIFTLTVITCERWYTITYAIHLNRRLKLSTATKIMVVGWVYSIAMAALPLF--DVSNYS---- 209 (262)
Q Consensus 136 ~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~P~~~~~~~~~~~~~~~~~~~W~~s~~~~~~~~~--~~~~~~---- 209 (262)
|..++....+..+......-.++.--+-|+.+|.+..+.+ ..++..-............... ..+. +.++.+
T Consensus 87 ~i~~h~~~~i~~~l~~~q~~~L~~CF~~KHQaIa~i~~~~-~l~~~~~~~~~~~~~~~p~~~~-~~~~~~~~s~eeq~~y 164 (303)
T PF10327_consen 87 GISSHYLMTIWIFLFIFQIESLVICFLRKHQAIARILSKH-VLPKWFYIFFYFFCILFPFFIF-ICFYFSGMSREEQMEY 164 (303)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC-cCcHHHHHHHhhHHHHHHHHHH-HHHHhcCCCHHHHHHH
Confidence 2234445556666666777777777889999999977643 3444433333444444444333 2221 211110
Q ss_pred ---CceEEeecC---------CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q psy12217 210 ---KTSICLPMK---------NTNSTDSAYLIFLLLFNGLAFWMICACYARMYSSIRGGTEGV 260 (262)
Q Consensus 210 ---~~~~C~~~~---------~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~~~~ 260 (262)
+-..|.... ..+.+........+.+...-..+..++...+++.+++.++++
T Consensus 165 I~~nyP~~~~~F~~l~nf~iY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~L~~~k~~i 227 (303)
T PF10327_consen 165 IRENYPEYLSWFSSLPNFAIYDFNPWFIFFFILAFFGGFLCFVIFIFLTIDMFRMLKKLKKKI 227 (303)
T ss_pred HHhhCCchhHHHhcCCCEEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 011232111 111111122223344456777888888999999888877665
No 29
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]. In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane
Probab=97.23 E-value=0.071 Score=45.51 Aligned_cols=168 Identities=13% Similarity=0.179 Sum_probs=107.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhh--hhcccc---cccccccc
Q psy12217 59 NWALRVSVWFVAIAALVGNLAVLLVLISSRFRMTVPKFLMCNLAFADFCMGLYLIMIAIMD--VRSIGD---YFNHAIYW 133 (262)
Q Consensus 59 ~~~~~~~~~~i~~~g~~gN~~vl~~~~~~~~~~~~~~~~l~nLaiaDll~~~~~~~~~~~~--~~~~~~---~~~~~~~w 133 (262)
.........+...+..+.+++.+.++..++++-+-+..-+.-++++-++.++........- ...=+. ........
T Consensus 8 ~~~~~~wi~~~s~ic~~~t~ftv~Tf~id~~rf~yPerpi~fl~~Cy~~~s~~~l~~~~~g~~~i~C~~~~~~~~~~~~~ 87 (328)
T PF01534_consen 8 KEFARIWIGVWSVICFISTLFTVLTFLIDRSRFRYPERPIIFLSFCYFIVSLGYLIRFILGRESIACRSQDGTERILVQD 87 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCccchhhHHHHHHHHHHHHHHHHHhccCCCcCCCcCCCCceeEeec
Confidence 3445556667777778888888888876666545567778888888888888776665541 110000 00000011
Q ss_pred ccCc-cchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccchhhHHHHHHHHHHHHHHHhhhcceeccCC---C
Q psy12217 134 QRGM-GCQMAGFLTVFSSVLSIFTLTVITCERWYTITYAIHLNRRLKLSTATKIMVVGWVYSIAMAALPLFDVSNY---S 209 (262)
Q Consensus 134 ~~~~-~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~P~~~~~~~~~~~~~~~~~~~W~~s~~~~~~~~~~~~~~---~ 209 (262)
..++ .|.+...+.+++..++...-+.+++.-|++....-. ++... ++....-++.|.++++..+..+. .++. +
T Consensus 88 ~~~~~~C~~~F~l~Yyf~mAa~~WWviLt~~W~lsa~~kw~-~e~i~-~~s~yfH~~aW~iP~~~ti~vL~-~~~VdgD~ 164 (328)
T PF01534_consen 88 GLENSSCTVVFLLLYYFGMAASLWWVILTLTWFLSAGLKWG-SEAIE-KKSSYFHLVAWGIPAVLTIAVLA-LRKVDGDE 164 (328)
T ss_pred CCCCCchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccC-cchhh-hhcchhhhHHhhhhHHHHHHHHH-hccccccc
Confidence 1223 799999999999999998889999999998875333 33333 56666789999999998754433 3332 3
Q ss_pred CceEEeecCCCCCCchhHHH
Q psy12217 210 KTSICLPMKNTNSTDSAYLI 229 (262)
Q Consensus 210 ~~~~C~~~~~~~~~~~~~~~ 229 (262)
-.+.|.....+......|.+
T Consensus 165 ltGiC~Vg~~~~~~l~~fvl 184 (328)
T PF01534_consen 165 LTGICFVGNQNPSALRGFVL 184 (328)
T ss_pred ccceeEEeCCCHHHHhHHHH
Confidence 34789776555444444444
No 30
>KOG4564|consensus
Probab=97.00 E-value=0.083 Score=47.00 Aligned_cols=152 Identities=13% Similarity=0.093 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccc----cCc-c
Q psy12217 64 VSVWFVAIAALVGNLAVLLVLISSRFRMTVPKFLMCNLAFADFCMGLYLIMIAIMDVRSIGDYFNHAIYWQ----RGM-G 138 (262)
Q Consensus 64 ~~~~~i~~~g~~gN~~vl~~~~~~~~~~~~~~~~l~nLaiaDll~~~~~~~~~~~~~~~~~~~~~~~~~w~----~~~-~ 138 (262)
+++.+--.++++.=++.+.++..-|++|-..|+.=.||-++=++-++..+................+..+. .+. .
T Consensus 149 ~lytvGyslSl~sL~vAl~If~~FR~L~CtRn~IH~nLF~SfiLra~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 228 (473)
T KOG4564|consen 149 ILYTVGYSLSLVSLLVALIIFLYFRSLHCTRNYIHMNLFASFILRAASVLIKDLVLVVNGEQDASSDTSLHCLISSNPVG 228 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccchh
Confidence 45555444555544455555666788998889999999999999988877766543322111111111122 233 7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccchhhHHHHHHHHHHHHHHHhhhcceeccCCCCceEEeecC
Q psy12217 139 CQMAGFLTVFSSVLSIFTLTVITCERWYTITYAIHLNRRLKLSTATKIMVVGWVYSIAMAALPLFDVSNYSKTSICLPMK 218 (262)
Q Consensus 139 C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~P~~~~~~~~~~~~~~~~~~~W~~s~~~~~~~~~~~~~~~~~~~C~~~~ 218 (262)
|+....+...+..+..+.+.+=.+.-|-.+.--... .+++-......-|.+.+++. .+....+.+.++..|....
T Consensus 229 Ck~~~~~~~Yf~~aNf~WmlvEGlYLhtLlv~~~~s----er~~~~~y~~iGWG~P~v~v-~~Wai~r~~~~d~~CW~~~ 303 (473)
T KOG4564|consen 229 CKLLFVFFQYFVLANFFWMLVEGLYLHTLLVVAFFS----ERRYFWLYLLIGWGVPAVFV-VVWAIVRLYLEDTGCWDSN 303 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeecc----CccHHHHHHHHhhCCcHHHh-hhHHhHheeeccccccccC
Confidence 999999999999999999999888777666543221 25677778888999999886 4444344445555786544
Q ss_pred CC
Q psy12217 219 NT 220 (262)
Q Consensus 219 ~~ 220 (262)
.+
T Consensus 304 ~~ 305 (473)
T KOG4564|consen 304 DT 305 (473)
T ss_pred CC
Confidence 43
No 31
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].
Probab=96.92 E-value=0.002 Score=54.53 Aligned_cols=119 Identities=10% Similarity=0.049 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCC-chhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc--cccccccccCc-cchhh
Q psy12217 67 WFVAIAALVGNLAVLLVLISSRFRM-TVPKFLMCNLAFADFCMGLYLIMIAIMDVRSIGDY--FNHAIYWQRGM-GCQMA 142 (262)
Q Consensus 67 ~~i~~~g~~gN~~vl~~~~~~~~~~-~~~~~~l~nLaiaDll~~~~~~~~~~~~~~~~~~~--~~~~~~w~~~~-~C~~~ 142 (262)
-+-++++++.|.+.++.+.++.+++ ..-.+++...|+.|+..++.-....-......+.. ....+.+..+. ..++.
T Consensus 6 ~~~~~~s~~~N~~Li~Li~~~s~k~~G~Yk~Lm~~fs~~~i~fs~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (307)
T PF10326_consen 6 YIGFVLSLFLNSLLIYLILTKSPKSLGSYKYLMIYFSIFEIIFSILDFLVQPIIHSYGSSFVVFSDSGPFFLSKSIGQIL 85 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEehhHHHHHHHHHHHHHHHhceeecCCeeEEEeecccccccchheeeh
Confidence 3567889999999999987554433 33457788889999998877544332211111111 11122333333 56677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccchhhHHHH
Q psy12217 143 GFLTVFSSVLSIFTLTVITCERWYTITYAIHLNRRLKLSTATKI 186 (262)
Q Consensus 143 ~~~~~~~~~~s~~~l~~isidRy~~i~~P~~~~~~~~~~~~~~~ 186 (262)
..+...+...+...++.--+.||.++++|.+. +..+.++....
T Consensus 86 ~~~y~~~f~~~~~llaihFiYRY~av~~~~~l-~~f~~~~~~~w 128 (307)
T PF10326_consen 86 LAIYCGCFGMSFSLLAIHFIYRYWAVCRPKKL-RYFSGWRFIIW 128 (307)
T ss_pred hhhhhhhHHHHHHHHHhHhhhheeeeccchhh-ccccccceeee
Confidence 77777777788888888889999999999864 33444444433
No 32
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes. A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane
Probab=96.79 E-value=0.093 Score=45.00 Aligned_cols=133 Identities=16% Similarity=0.073 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcC----CCch--hHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccc-----cccc
Q psy12217 63 RVSVWFVAIAALVGNLAVLLVLISSRF----RMTV--PKFLMCNLAFADFCMGLYLIMIAIMDVRSIGDYF-----NHAI 131 (262)
Q Consensus 63 ~~~~~~i~~~g~~gN~~vl~~~~~~~~----~~~~--~~~~l~nLaiaDll~~~~~~~~~~~~~~~~~~~~-----~~~~ 131 (262)
-.+...-.++|+.|-++-+.--.|... .+++ ..-.+..|++||++.++.++.....-.-..+..- +...
T Consensus 30 ~avCLgSs~l~l~gallQLlp~rr~~~~~~~~~sp~~~~rIl~~la~aDlLaclGVivRS~vWl~~p~~~~s~s~~~~~d 109 (405)
T PF02101_consen 30 NAVCLGSSVLSLLGALLQLLPRRRSAGPRAPARSPSSSRRILFWLAVADLLACLGVIVRSSVWLGFPNFIDSISDVNGTD 109 (405)
T ss_pred hhhHHHHHHHHHHHHHHhhccccccccccccccCCcCCchhHHHHHHHHHHhhhhHHHHhhhhhcCCcccccccCCCCCc
Confidence 334444555666665555443222111 1122 3578999999999999988777665333211110 0111
Q ss_pred ccccCc-cchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccchhhHHHHHHHHHHHHHHHhhhcce
Q psy12217 132 YWQRGM-GCQMAGFLTVFSSVLSIFTLTVITCERWYTITYAIHLNRRLKLSTATKIMVVGWVYSIAMAALPLF 203 (262)
Q Consensus 132 ~w~~~~-~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~P~~~~~~~~~~~~~~~~~~~W~~s~~~~~~~~~ 203 (262)
.|+ . .|.....-..++..++.+.+.+-|+|-|+.+.+.- .+.+....-.+.|..+.++..-...
T Consensus 110 ~wp--~afCv~ss~WIq~fYsAtfwWtfcYAVDv~Lv~~~~a------g~~~~~lYH~~aWgl~~lL~~~Gl~ 174 (405)
T PF02101_consen 110 IWP--AAFCVGSSMWIQLFYSATFWWTFCYAVDVYLVIRRSA------GRSTIWLYHMMAWGLPALLCAEGLA 174 (405)
T ss_pred ccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeeccC------CCcchhHHHHHHHHHHHHHHHhccc
Confidence 222 3 68887666667888999999999999999875411 1234456678899999988754433
No 33
>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class xa (Srxa), from the Str superfamily [].
Probab=96.51 E-value=0.0022 Score=47.99 Aligned_cols=62 Identities=15% Similarity=0.194 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccchhhHHHHHHHHHHHHHHHhhhcce
Q psy12217 142 AGFLTVFSSVLSIFTLTVITCERWYTITYAIHLNRRLKLSTATKIMVVGWVYSIAMAALPLF 203 (262)
Q Consensus 142 ~~~~~~~~~~~s~~~l~~isidRy~~i~~P~~~~~~~~~~~~~~~~~~~W~~s~~~~~~~~~ 203 (262)
...+..++.....+...+|++||-..+.+|.+....++.+|....|.++.++.+..-+.|.+
T Consensus 47 ~TL~~tf~Yl~plfltvLMti~Ri~iV~~P~~~~~~Fs~~kl~~YC~~i~i~~~i~LlIPy~ 108 (153)
T PF03383_consen 47 VTLFGTFSYLHPLFLTVLMTINRIYIVLFPFGSEIWFSDKKLWIYCGIIAILSFISLLIPYF 108 (153)
T ss_pred EeeeehHHHHHHHHHHHHHHHhheEEEEecCCCccccccchhHHHHHHHHHHHHHHHHhhcC
Confidence 34556667778888899999999999999999656899999999999888888887777776
No 34
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srh is part of the Str superfamily of chemoreceptors [].
Probab=95.96 E-value=0.58 Score=39.41 Aligned_cols=139 Identities=10% Similarity=0.131 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCchhHHHHHHHHHHHH----HHHHHHHHHHhhhhhcccccccccccccc
Q psy12217 61 ALRVSVWFVAIAALVGNLAVLLVLISSR-FRMTVPKFLMCNLAFADF----CMGLYLIMIAIMDVRSIGDYFNHAIYWQR 135 (262)
Q Consensus 61 ~~~~~~~~i~~~g~~gN~~vl~~~~~~~-~~~~~~~~~l~nLaiaDl----l~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 135 (262)
......-.+.++++.-|.+..+.+.++. +..+.....+.|+-+.+. ..+....|....+... .+..+--.+.
T Consensus 5 ~~~~~~h~~~~i~~Pi~~~~~y~Il~ktp~~m~~~k~~ll~~~~~~~~~d~~~~~l~~P~~~~P~~~--~~~~G~l~~~- 81 (302)
T PF10318_consen 5 FYSIVLHIITIISIPIYIFGFYCILFKTPKSMKSVKWYLLNHHFWNFLLDLYLSFLIIPYFFFPSPA--GYPLGILSYF- 81 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHheeEeChhhhHHHHHHHHHHHHHHHHHHHHhhhEEeeeeccchHH--hhCCcchhhc-
Confidence 3455666788899999999999886553 333555566666655544 4444444444333221 0111101111
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccchhhHHHHHHHHHHHHHHHhhhccee
Q psy12217 136 GMGCQMAGFLTVFSSVLSIFTLTVITCERWYTITYAIHLNRRLKLSTATKIMVVGWVYSIAMAALPLFD 204 (262)
Q Consensus 136 ~~~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~P~~~~~~~~~~~~~~~~~~~W~~s~~~~~~~~~~ 204 (262)
|--..+..++..........++..+--+||.++..+.+ +...++.........++.+.....+....
T Consensus 82 gv~~~~q~~i~~~~~~~~~~S~~~lFe~R~~~i~~~~~--~~~~~~~r~~~~~~~y~~~~~~~~~~~~~ 148 (302)
T PF10318_consen 82 GVPTPIQFYIGVTLLAFVGVSILSLFENRYQIIIRNRS--RSLWKKIRIIFIIFNYIIAFLFFIPIYLS 148 (302)
T ss_pred ccChHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccc--cccchhhHHHHHHHHHHHHHHHHHHHhcC
Confidence 22366777888888888888999999999999996544 22222333344445555555555455443
No 35
>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). Little is known about the structure and function of the mating factor receptors, STE2 and STE3. It is believed, however, that they are integral membrane proteins that may be involved in the response to mating factors on the cell membrane [, , ]. The amino acid sequences of both receptors contain high proportions of hydrophobic residues grouped into 7 domains, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins. However, while a similar 3D framework has been proposed to account for this, there is no significant sequence similarity either between STE2 and STE3, or between these and the rhodopsin-type family: the receptors thus bear their own unique '7TM' signatures. The STE3 gene of Saccharomyces cerevisiae (Baker's yeast) is the cell-surface receptor that binds the 13-residue lipopeptide a-factor. Several related fungal pheromone receptor sequences are known: these include pheromone B alpha 1 and B alpha 3, and pheromone B beta 1 receptors from Schizophyllum commune; pheromone receptor 1 from Ustilago hordei; and pheromone receptors 1 and 2 from Ustilago maydis. Members of the family share about 20% sequence identity.; GO: 0004932 mating-type factor pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=95.31 E-value=1.5 Score=36.79 Aligned_cols=132 Identities=17% Similarity=0.151 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHH-HhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccccccCccchhhHHHHHHHH
Q psy12217 72 AALVGNLAVLLVL-ISSRFRMTVPKFLMCNLAFADFCMGLYLIMIAIMDVRSIGDYFNHAIYWQRGMGCQMAGFLTVFSS 150 (262)
Q Consensus 72 ~g~~gN~~vl~~~-~~~~~~~~~~~~~l~nLaiaDll~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~C~~~~~~~~~~~ 150 (262)
++++|..+.+.-+ ++-|....+.-.++.-+.++++...+=...+. +....|-. -.|.+...+.....
T Consensus 3 ~s~i~~~l~i~Pl~wH~ra~N~~~~~li~Wl~l~nl~~~INaiIW~-----------~n~~~~~~-~wCDI~~kl~~~~~ 70 (283)
T PF02076_consen 3 FSFIAFVLLIVPLPWHWRARNIGTCSLIFWLFLSNLIYFINAIIWR-----------DNDINWWP-VWCDISTKLIIGSS 70 (283)
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHhhhhcC-----------CCCCccCc-eeeeehHHHHHHHH
Confidence 4556666666555 44455556778889999998887644433332 11112221 36999999888888
Q ss_pred HHHHHHHHHHHHHHHhhhhcccccc--cccchhhHHHHHHHHHHHHHHHhhhccee-ccCCC--CceEEee
Q psy12217 151 VLSIFTLTVITCERWYTITYAIHLN--RRLKLSTATKIMVVGWVYSIAMAALPLFD-VSNYS--KTSICLP 216 (262)
Q Consensus 151 ~~s~~~l~~isidRy~~i~~P~~~~--~~~~~~~~~~~~~~~W~~s~~~~~~~~~~-~~~~~--~~~~C~~ 216 (262)
..-....++|+-.-+. |..+.+.. +..+||+...=...++.+.++...+.... .+.++ ++.-|.+
T Consensus 71 ~g~~~a~lcI~r~L~~-I~s~r~~~~~~~~~rr~~~~d~~i~~g~Pil~m~l~yivQ~~Rf~I~e~~GC~~ 140 (283)
T PF02076_consen 71 VGIPAASLCIMRRLYR-IASARAVSLSRSEKRRRIIIDLLICFGIPILQMALHYIVQGHRFDIVEDVGCYP 140 (283)
T ss_pred HHHHHHHHHHHHHHHH-HhccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeEecccCCcc
Confidence 8877777777766553 44443322 22235666666788888887766554432 22232 4445754
No 36
>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class u (Sru) from the Srg superfamily [].
Probab=92.49 E-value=3.7 Score=34.81 Aligned_cols=112 Identities=11% Similarity=0.078 Sum_probs=70.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccchhhHHHHHHHHHHHHHHHhhhcceeccCCCCceEEeecC
Q psy12217 139 CQMAGFLTVFSSVLSIFTLTVITCERWYTITYAIHLNRRLKLSTATKIMVVGWVYSIAMAALPLFDVSNYSKTSICLPMK 218 (262)
Q Consensus 139 C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~P~~~~~~~~~~~~~~~~~~~W~~s~~~~~~~~~~~~~~~~~~~C~~~~ 218 (262)
=++..+......+.+...-++.++-|...+..|.+++ ...++-.....-.+.+.+++.+.+-+. ..+.|....
T Consensus 103 Lk~l~~~~~~~~Y~s~lf~~Lfc~~Rl~il~~p~~~~-~i~~~i~~~~~P~i~i~p~~~~f~~~p------a~G~C~Ql~ 175 (307)
T PF10322_consen 103 LKILVFFYYYFNYSSMLFPVLFCLLRLIILYSPRNHK-KICRKIFRIWIPFIFIYPFCFTFPMFP------ALGYCRQLD 175 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHheeCccchh-HHHHhHHHHHHHHHHHHHHHHHHHccC------CcEEEEeCC
Confidence 4677888999999999999999999999999998853 344455556666777777776644333 233342211
Q ss_pred ------------CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy12217 219 ------------NTNSTDSAYLIFLLLFNGLAFWMICACYARMYSSIRGGT 257 (262)
Q Consensus 219 ------------~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~ 257 (262)
..+..+.............-...+++.+..+++++|+.+
T Consensus 176 ~Pf~fGAI~I~~~~~~~~~~~~~~~l~~s~~~~~~iii~N~lm~~Klr~~k 226 (307)
T PF10322_consen 176 PPFPFGAIIITSTGSWFNIRNSIFHLFFSIFWMISIIILNILMFFKLRKLK 226 (307)
T ss_pred CCCCCCEEEEEEEcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111111122222333334455666777888888887754
No 37
>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=89.93 E-value=9.1 Score=30.93 Aligned_cols=41 Identities=12% Similarity=0.127 Sum_probs=36.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccc
Q psy12217 138 GCQMAGFLTVFSSVLSIFTLTVITCERWYTITYAIHLNRRL 178 (262)
Q Consensus 138 ~C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~P~~~~~~~ 178 (262)
.||.......+.++.++..-..+++||++|.....+|.+..
T Consensus 84 ~~K~~h~~~~flmT~~ml~PigftIERfiAl~~A~~YE~~r 124 (236)
T PF02175_consen 84 LFKYGHLTGLFLMTIPMLFPIGFTIERFIALKMAEKYENTR 124 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccCc
Confidence 67888889999999999999999999999999988886543
No 38
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].
Probab=87.45 E-value=17 Score=30.87 Aligned_cols=116 Identities=9% Similarity=-0.039 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCC-chhHHHHHHHHHHHHHHHHHHH--HHHhhhhhccccccccccccccCc--cchhh
Q psy12217 68 FVAIAALVGNLAVLLVLISSRFRM-TVPKFLMCNLAFADFCMGLYLI--MIAIMDVRSIGDYFNHAIYWQRGM--GCQMA 142 (262)
Q Consensus 68 ~i~~~g~~gN~~vl~~~~~~~~~~-~~~~~~l~nLaiaDll~~~~~~--~~~~~~~~~~~~~~~~~~~w~~~~--~C~~~ 142 (262)
+.++++.+-|.+-++.+..+|+.+ ..-.+++..-|+-|++.++.-. |..+...- .....--.++|-.+. .=+..
T Consensus 13 ~~~~lsf~~Np~fiyli~~~~~~~~G~Yr~LL~~Fa~fn~~~S~~~~~vp~~vh~yr-y~F~~fi~dG~F~~~s~l~~~~ 91 (310)
T PF10319_consen 13 IFGILSFIVNPIFIYLIFTEKKSQFGNYRYLLLFFAIFNLIYSVVDLLVPICVHGYR-YAFVVFISDGPFFEKSELGQHL 91 (310)
T ss_pred HHHHHHHHHhhhhheeEEcccccccccHHHHHHHHHHHHHHHHHHHHHhhheeeccc-eEEEEEEcCCcCcCcchHHHHH
Confidence 567889999999999988777665 4456899999999999988744 33221100 000011112232221 11222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccchhhHH
Q psy12217 143 GFLTVFSSVLSIFTLTVITCERWYTITYAIHLNRRLKLSTAT 184 (262)
Q Consensus 143 ~~~~~~~~~~s~~~l~~isidRy~~i~~P~~~~~~~~~~~~~ 184 (262)
...-.....+|-..+..==+.||+++++|..-++.+.+....
T Consensus 92 ls~RCsfIs~sYaIL~~HFvYRYl~l~~~~~~~~~F~p~gl~ 133 (310)
T PF10319_consen 92 LSIRCSFISGSYAILHIHFVYRYLVLFNSKFINKYFMPYGLI 133 (310)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhCcHHHHHhhhhHHHH
Confidence 222233333455566666789999999986654444333333
No 39
>PF03125 Sre: C. elegans Sre G protein-coupled chemoreceptor; InterPro: IPR004151 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class e (Sre) from the Sra superfamily []. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=73.83 E-value=60 Score=28.24 Aligned_cols=118 Identities=14% Similarity=0.109 Sum_probs=60.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHH---HHHHHhhhhhccccc-ccccccccc
Q psy12217 60 WALRVSVWFVAIAALVGNLAVLLVLISSRFRMTVPKFLMCNLAFADFCMGLY---LIMIAIMDVRSIGDY-FNHAIYWQR 135 (262)
Q Consensus 60 ~~~~~~~~~i~~~g~~gN~~vl~~~~~~~~~~~~~~~~l~nLaiaDll~~~~---~~~~~~~~~~~~~~~-~~~~~~w~~ 135 (262)
....++-.++.+++..-....+.+..+-|..|.-.+.+....-..-+-..+. ..|.-.......+.. .....-|..
T Consensus 27 ~~~~i~e~~l~~~~~~~~~~~~~i~~~~r~FH~N~~~l~~~~~~~w~e~~i~k~~i~~y~~~~~~~~~~~~~~~~~~~t~ 106 (365)
T PF03125_consen 27 IILLIFELILYIICFYFTFKSCYIILKIRQFHRNLNILFIFILLQWFELIIGKILIIPYQIGIITLGDISIGTYIQWWTD 106 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhceeeecCccchhhhhhhcc
Confidence 3344444445555555555556667777777766665555544444333222 222221111000000 000001111
Q ss_pred ------------Ccc-chhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Q psy12217 136 ------------GMG-CQMAGFLTVFSSVLSIFTLTVITCERWYTITYAIHLNRR 177 (262)
Q Consensus 136 ------------~~~-C~~~~~~~~~~~~~s~~~l~~isidRy~~i~~P~~~~~~ 177 (262)
+.. -.+.+++.+-.++.....+.++++||..|-..-..|.++
T Consensus 107 ~~~~m~~v~~~~~~~~l~~~~~l~~~y~~~~~~~~~~~~iER~~AT~~i~dYEk~ 161 (365)
T PF03125_consen 107 DPSEMIPVNSFNDSWPLFIGGFLRWHYMFSAIFCLLAIVIERCFATYFIKDYEKK 161 (365)
T ss_pred CcccceeeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 111 223455666666777899999999999999998888543
No 40
>PF10325 7TM_GPCR_Srz: Serpentine type 7TM GPCR chemoreceptor Srz; InterPro: IPR018817 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class z (Srz), a solo family amongst the superfamilies of chemoreceptors [, ]. The genes encoding Srz appear to be under strong adaptive evolutionary pressure [].
Probab=67.06 E-value=67 Score=26.35 Aligned_cols=112 Identities=13% Similarity=0.181 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccc-ccchhhHHHHHHHHHHHHHHHhhhcceeccCCCCceEEeecCCC
Q psy12217 142 AGFLTVFSSVLSIFTLTVITCERWYTITYAIHLNR-RLKLSTATKIMVVGWVYSIAMAALPLFDVSNYSKTSICLPMKNT 220 (262)
Q Consensus 142 ~~~~~~~~~~~s~~~l~~isidRy~~i~~P~~~~~-~~~~~~~~~~~~~~W~~s~~~~~~~~~~~~~~~~~~~C~~~~~~ 220 (262)
..+.......+-...+..+|++|+.---.|..-+. ..++|.....+.....+..+-...-.........+..+.. .
T Consensus 85 ~~~~l~i~~~v~~lllsLLAIqRFllyFfP~~Ek~v~~~~k~~~~~I~~lY~~~~~k~i~~~~~~~~~~~~~~~~~---~ 161 (267)
T PF10325_consen 85 FIFILYIITQVFHLLLSLLAIQRFLLYFFPSSEKYVNFSQKNIKKIIWFLYIFFILKDIVFFIWYFISFNNESTEE---I 161 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchh---h
Confidence 34455555566667889999999999999974222 2233444444444444433332111111100001000000 1
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy12217 221 NSTDSAYLIFLLLFNGLAFWMICACYARMYSSIRGGT 257 (262)
Q Consensus 221 ~~~~~~~~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~ 257 (262)
+.....+........ +-+.+-...|+-|....||.+
T Consensus 162 ~~~~~~~~~~~~~~~-~ll~~S~lLYIPI~isirK~~ 197 (267)
T PF10325_consen 162 ETFSYIYVIFYIILN-ILLFLSALLYIPIFISIRKLS 197 (267)
T ss_pred hHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHhh
Confidence 111122222223322 334555677888888888655
No 41
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=54.80 E-value=21 Score=25.82 Aligned_cols=21 Identities=14% Similarity=0.225 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHhhcCCCc
Q psy12217 72 AALVGNLAVLLVLISSRFRMT 92 (262)
Q Consensus 72 ~g~~gN~~vl~~~~~~~~~~~ 92 (262)
.|++|=++.|...+||+++++
T Consensus 75 aGvIg~Illi~y~irR~~Kk~ 95 (122)
T PF01102_consen 75 AGVIGIILLISYCIRRLRKKS 95 (122)
T ss_dssp HHHHHHHHHHHHHHHHHS---
T ss_pred HHHHHHHHHHHHHHHHHhccC
Confidence 344444444444444444443
No 42
>PF09882 DUF2109: Predicted membrane protein (DUF2109); InterPro: IPR019214 This entry is found in various hypothetical archaeal proteins and has no known function.
Probab=44.06 E-value=65 Score=21.07 Aligned_cols=48 Identities=10% Similarity=0.124 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q psy12217 69 VAIAALVGNLAVLLVLISSRFRMTVPKFLMCNLAFADFCMGLYLIMIA 116 (262)
Q Consensus 69 i~~~g~~gN~~vl~~~~~~~~~~~~~~~~l~nLaiaDll~~~~~~~~~ 116 (262)
..+.|+++=...+.++..+.+.++-.++-..|-+++-++....--|..
T Consensus 3 ~~i~g~Iai~~~iR~~~~~~r~~KL~yLnv~~F~iaalIaL~i~~P~g 50 (78)
T PF09882_consen 3 IIIIGIIAILMAIRIFLTKSRARKLLYLNVINFAIAALIALYIKSPMG 50 (78)
T ss_pred hHHHHHHHHHHHHHHHHhHhHHHhhhHHHHHHHHHHHHHHHHhCCcHH
Confidence 345667776677777877888888888889999999887665544443
No 43
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=42.66 E-value=40 Score=24.94 Aligned_cols=14 Identities=7% Similarity=0.097 Sum_probs=7.9
Q ss_pred HHHHHHHhcccccc
Q psy12217 247 ARMYSSIRGGTEGV 260 (262)
Q Consensus 247 ~~I~~~l~~~~~~~ 260 (262)
++|.+.-+|++|+.
T Consensus 47 vli~lcssRKkKaa 60 (189)
T PF05568_consen 47 VLIYLCSSRKKKAA 60 (189)
T ss_pred HHHHHHhhhhHHHH
Confidence 44555666665554
No 44
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=40.88 E-value=2.1e+02 Score=25.62 Aligned_cols=47 Identities=21% Similarity=0.138 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHH--h--hc-----CCCchhHHHHHHHHHHHHHHHHHHHH
Q psy12217 68 FVAIAALVGNLAVLLVLI--S--SR-----FRMTVPKFLMCNLAFADFCMGLYLIM 114 (262)
Q Consensus 68 ~i~~~g~~gN~~vl~~~~--~--~~-----~~~~~~~~~l~nLaiaDll~~~~~~~ 114 (262)
.+..++++.+++.+.+++ + .| +.+.....+...|.+.-++.+.....
T Consensus 44 ~iaavwlil~ll~ll~~~~~~CCcr~~~~~~k~~s~~c~~~sLiiltL~~~aaIi~ 99 (418)
T cd07912 44 SIPAACLILSLLFLLVYLITRCCDRKPTEERPRHSICCLKWSLVIATLLCCAAIGV 99 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 355555556655555332 1 12 22233457777777777776554433
No 45
>PF00003 7tm_3: 7 transmembrane sweet-taste receptor of 3 GCPR; InterPro: IPR017978 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). GPCR family 3 receptors (also known as family C) are structurally similar to other GPCRs, but do not show any significant sequence similarity and thus represent a distinct group. Structurally they are composed of four elements; an N-terminal signal sequence; a large hydrophilic extracellular agonist-binding region containing several conserved cysteine residues which could be involved in disulphide bonds; a shorter region containing seven transmembrane domains; and a C-terminal cytoplasmic domain of variable length []. Family 3 members include the metabotropic glutamate receptors, the extracellular calcium-sensing receptors, the gamma-amino-butyric acid (GABA) type B receptors, and the vomeronasal type-2 receptors [, , , ]. As these receptors regulate many important physiological processes they are potentially promising targets for drug development. This entry represents the C-terminal region of family 3 GPCR receptor proteins, which contains the seven transmembrane region. The seven TM regions assemble in such a way as to produce a docking pocket into which such molecules as cyclamate and lactisole have been found to bind and consequently confer the taste of sweetness []. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=38.71 E-value=89 Score=24.97 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=15.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHH
Q psy12217 138 GCQMAGFLTVFSSVLSIFTLTVITCE 163 (262)
Q Consensus 138 ~C~~~~~~~~~~~~~s~~~l~~isid 163 (262)
.|....+....+.......+.+=+..
T Consensus 55 ~C~~r~~~~~l~f~l~~~~ll~K~~r 80 (238)
T PF00003_consen 55 LCTLRRWLFSLGFTLIFSALLAKTWR 80 (238)
T ss_pred EEEEeeeeeeeehHhhhhHHHHhhhh
Confidence 68887766666555555555544443
No 46
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=34.43 E-value=1.7e+02 Score=20.85 Aligned_cols=13 Identities=15% Similarity=0.202 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q psy12217 62 LRVSVWFVAIAAL 74 (262)
Q Consensus 62 ~~~~~~~i~~~g~ 74 (262)
+++++.+++.+.+
T Consensus 46 la~~Lli~G~~li 58 (115)
T PF05915_consen 46 LAVFLLIFGTVLI 58 (115)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 47
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=28.35 E-value=2.7e+02 Score=21.26 Aligned_cols=28 Identities=21% Similarity=0.100 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy12217 61 ALRVSVWFVAIAALVGNLAVLLVLISSR 88 (262)
Q Consensus 61 ~~~~~~~~i~~~g~~gN~~vl~~~~~~~ 88 (262)
....+|.++++.+++.=.+++.++..+|
T Consensus 94 l~R~~~Vl~g~s~l~i~yfvir~~R~r~ 121 (163)
T PF06679_consen 94 LKRALYVLVGLSALAILYFVIRTFRLRR 121 (163)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3455666666666655555665554343
No 48
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=28.16 E-value=89 Score=18.64 Aligned_cols=23 Identities=13% Similarity=0.229 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q psy12217 64 VSVWFVAIAALVGNLAVLLVLISSR 88 (262)
Q Consensus 64 ~~~~~i~~~g~~gN~~vl~~~~~~~ 88 (262)
++..+++++|++| +.++.+.+++
T Consensus 5 ~iV~i~iv~~lLg--~~I~~~~K~y 27 (50)
T PF12606_consen 5 LIVSIFIVMGLLG--LSICTTLKAY 27 (50)
T ss_pred HHHHHHHHHHHHH--HHHHHHhhcc
Confidence 3455677777777 4444554444
No 49
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=27.98 E-value=89 Score=27.07 Aligned_cols=30 Identities=13% Similarity=0.227 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy12217 62 LRVSVWFVAIAALVGNLAVLLVLISSRFRM 91 (262)
Q Consensus 62 ~~~~~~~i~~~g~~gN~~vl~~~~~~~~~~ 91 (262)
-++..+++.++-++.-.++++.+.|.||.+
T Consensus 310 t~IiaSiIAIvvIVLIMvIIYLILRYRRKK 339 (353)
T TIGR01477 310 TPIIASIIAILIIVLIMVIIYLILRYRRKK 339 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 355667777777778778888887766544
No 50
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=26.62 E-value=89 Score=19.04 Aligned_cols=20 Identities=20% Similarity=0.409 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy12217 67 WFVAIAALVGNLAVLLVLIS 86 (262)
Q Consensus 67 ~~i~~~g~~gN~~vl~~~~~ 86 (262)
.++.+--++||+.++---.+
T Consensus 9 IviVlgvIigNia~LK~sAk 28 (55)
T PF11446_consen 9 IVIVLGVIIGNIAALKYSAK 28 (55)
T ss_pred HHHHHHHHHhHHHHHHHhcc
Confidence 33344445699888766544
No 51
>PTZ00046 rifin; Provisional
Probab=24.98 E-value=1.1e+02 Score=26.61 Aligned_cols=29 Identities=17% Similarity=0.282 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy12217 63 RVSVWFVAIAALVGNLAVLLVLISSRFRM 91 (262)
Q Consensus 63 ~~~~~~i~~~g~~gN~~vl~~~~~~~~~~ 91 (262)
++..+++.++-++.-.++++.+.|.||.+
T Consensus 316 aIiaSiiAIvVIVLIMvIIYLILRYRRKK 344 (358)
T PTZ00046 316 AIIASIVAIVVIVLIMVIIYLILRYRRKK 344 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 45666777777777778888887766544
No 52
>TIGR02736 cbb3_Q_epsi cytochrome c oxidase, cbb3-type, CcoQ subunit, epsilon-Proteobacterial. Members of this protein family are restricted to the epsilon branch of the Proteobacteria. All members are found in operons containing the other three structural subunits of the cbb3 type of cytochrome c oxidase. These small proteins show remote sequence similarity to the CcoQ subunit in other cytochrome c oxidase systems, so this family is assumed to represent the epsilonproteobacterial variant of CcoQ.
Probab=23.99 E-value=1.4e+02 Score=18.16 Aligned_cols=24 Identities=21% Similarity=0.461 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHhccccc
Q psy12217 236 GLAFWMICACYARMYSSIRGGTEG 259 (262)
Q Consensus 236 ~ip~~ii~~~y~~I~~~l~~~~~~ 259 (262)
++.+++.++.|..++..-|+.+++
T Consensus 6 ~~ti~lvv~LYgY~yhLYrsek~G 29 (56)
T TIGR02736 6 AFTLLLVIFLYAYIYHLYRSQKKG 29 (56)
T ss_pred HHHHHHHHHHHHHHHHhhhhhccc
Confidence 344555666777777666665543
No 53
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=23.63 E-value=88 Score=26.51 Aligned_cols=30 Identities=13% Similarity=0.230 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy12217 62 LRVSVWFVAIAALVGNLAVLLVLISSRFRM 91 (262)
Q Consensus 62 ~~~~~~~i~~~g~~gN~~vl~~~~~~~~~~ 91 (262)
.+++.+++.++-++.=.++|+.++|.||.+
T Consensus 256 t~I~aSiiaIliIVLIMvIIYLILRYRRKK 285 (299)
T PF02009_consen 256 TAIIASIIAILIIVLIMVIIYLILRYRRKK 285 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556666666666667777777766533
No 54
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=22.82 E-value=25 Score=19.83 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q psy12217 65 SVWFVAIAALVGNLAVLLVLISSR 88 (262)
Q Consensus 65 ~~~~i~~~g~~gN~~vl~~~~~~~ 88 (262)
+..+.+++|+.|-.++...+.|+-
T Consensus 10 VIlVF~lVglv~i~iva~~iYRKw 33 (43)
T PF08114_consen 10 VILVFCLVGLVGIGIVALFIYRKW 33 (43)
T ss_pred eeeehHHHHHHHHHHHHHHHHHHH
Confidence 334667778888777776666553
No 55
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=22.59 E-value=43 Score=18.92 Aligned_cols=22 Identities=5% Similarity=-0.164 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHhccc
Q psy12217 236 GLAFWMICACYARMYSSIRGGT 257 (262)
Q Consensus 236 ~ip~~ii~~~y~~I~~~l~~~~ 257 (262)
.+|..++...-..++...||++
T Consensus 18 vVPV~vI~~vl~~~l~~~~rR~ 39 (40)
T PF08693_consen 18 VVPVGVIIIVLGAFLFFWYRRK 39 (40)
T ss_pred EechHHHHHHHHHHhheEEecc
Confidence 4676666666555555555554
No 56
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=22.40 E-value=68 Score=23.80 Aligned_cols=34 Identities=15% Similarity=0.132 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q psy12217 59 NWALRVSVWFVAIAALVGNLAVLLVLISSRFRMT 92 (262)
Q Consensus 59 ~~~~~~~~~~i~~~g~~gN~~vl~~~~~~~~~~~ 92 (262)
..+.++++.+++++|+++-+.+++-.+.++...+
T Consensus 61 tAIaGIVfgiVfimgvva~i~icvCmc~kn~rgs 94 (155)
T PF10873_consen 61 TAIAGIVFGIVFIMGVVAGIAICVCMCMKNSRGS 94 (155)
T ss_pred ceeeeeehhhHHHHHHHHHHHHHHhhhhhcCCCc
Confidence 3445678888899999998888877776665433
No 57
>PHA02909 hypothetical protein; Provisional
Probab=21.17 E-value=2.1e+02 Score=17.38 Aligned_cols=26 Identities=27% Similarity=0.430 Sum_probs=21.1
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHH
Q psy12217 137 MGCQMAGFLTVFSSVLSIFTLTVITC 162 (262)
Q Consensus 137 ~~C~~~~~~~~~~~~~s~~~l~~isi 162 (262)
..|....++..+..+.|++.+.+-+.
T Consensus 31 tfcimvsfilfviiflsmftilacsy 56 (72)
T PHA02909 31 TFCIMVSFILFVIIFLSMFTILACSY 56 (72)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37999999998888888888776554
Done!