RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12217
(262 letters)
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family).
This family contains, amongst other G-protein-coupled
receptors (GCPRs), members of the opsin family, which
have been considered to be typical members of the
rhodopsin superfamily. They share several motifs, mainly
the seven transmembrane helices, GCPRs of the rhodopsin
superfamily. All opsins bind a chromophore, such as
11-cis-retinal. The function of most opsins other than
the photoisomerases is split into two steps: light
absorption and G-protein activation. Photoisomerases, on
the other hand, are not coupled to G-proteins - they are
thought to generate and supply the chromophore that is
used by visual opsins.
Length = 251
Score = 83.1 bits (206), Expect = 4e-19
Identities = 45/179 (25%), Positives = 74/179 (41%), Gaps = 14/179 (7%)
Query: 82 LVLISSRFRMTVPKFLMCNLAFADFCMGLYLIMIAIMDVRSIGDYFNHAIYWQRG-MGCQ 140
LV++ ++ T + NLA AD L L A+ Y+ W G C+
Sbjct: 1 LVILRTKKLRTPTNIFLLNLAVADLLFLLTLPPWAL--------YYLVGGDWPFGDALCK 52
Query: 141 MAGFLTVFSSVLSIFTLTVITCERWYTITYAIHLNRRLKLSTATKIMVVGWVYSIAMAAL 200
+ GFL V + SI LT I+ +R+ I + + R A +++V WV ++ ++
Sbjct: 53 LVGFLFVVNGYASILLLTAISIDRYLAIVHPLRYRRIRTPRRAKVLILVVWVLALLLSLP 112
Query: 201 PLF----DVSNYSKTSICLPMKNTNSTDSAYLIFL-LLFNGLAFWMICACYARMYSSIR 254
PL + CL ST +Y + LL L +I CY + ++R
Sbjct: 113 PLLFSWLRTVEEGNVTTCLIDFPEESTKRSYTLLSTLLGFVLPLLVILVCYTLILRTLR 171
>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like
protein; Provisional.
Length = 335
Score = 40.5 bits (95), Expect = 5e-04
Identities = 44/219 (20%), Positives = 90/219 (41%), Gaps = 22/219 (10%)
Query: 48 DAFNPCEDLMGNWALRVSVWFVA----IAALVGNLAVLLVLISSRFRMTVPKFLMCNLAF 103
+ + C+ +G + V LVGN+ V+ VL ++ + T + NLA
Sbjct: 25 EDYADCDLNIGYDTNSTILIVVYSTIFFFGLVGNIIVIYVLTKTKIK-TPMDIYLLNLAV 83
Query: 104 ADFCMGLYLIMIAIMDVRSIGDYFNHAIYWQRG-MGCQMAGFLTVFSSVLSIFTLTVITC 162
+D L+ + + + Y+ W G C++ L S+ +TV++
Sbjct: 84 SD------LLFVMTLPFQI---YYYILFQWSFGEFACKIVSGLYYIGFYNSMNFITVMSV 134
Query: 163 ERWYTITYAIHLNRRLKLSTATKIMVVGWVYSIAMAALPLFDVSNYSK---TSICLPMKN 219
+R+ I + + N+ + + +V W+ SI + P+ V K T IC N
Sbjct: 135 DRYIAIVHPVKSNKINTVKYGYIVSLVIWIISI-IETTPILFVYTTKKDHETLICCMFYN 193
Query: 220 TNSTDSAYLI-FLLLFNGL--AFWMICACYARMYSSIRG 255
+ + I F + G+ ++ CY+++ +++G
Sbjct: 194 NKTMNWKLFINFEINIIGMLIPLTILLYCYSKILITLKG 232
>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein;
Provisional.
Length = 417
Score = 34.6 bits (79), Expect = 0.048
Identities = 37/170 (21%), Positives = 76/170 (44%), Gaps = 21/170 (12%)
Query: 62 LRVSVWFVAIAALVGNLAVLLVLISSRFRMTVPKFLMCNLAFAD--FCMGLYLIMIAIMD 119
+++ + I L GN A++++L + + T+ + NLA +D F + I+ D
Sbjct: 101 IKIFYIIIFILGLFGNAAIIMILFCKKIK-TITDIYIFNLAISDLIFVIDFPFIIYNEFD 159
Query: 120 VRSIGDYFNHAIYWQRGMGCQMAGFLTVFSSVLSIFTLTVITCERWYTITYAIHLNRRLK 179
GD+ I + ++ FS+ +F +T+++ +R++ I Y I +
Sbjct: 160 QWIFGDFMCKVI--------SASYYIGFFSN---MFLITLMSIDRYFAILYPISFQKYRT 208
Query: 180 LSTATKIMVVGWVYS--IAMAALPLFDVSNYSKTSICLPMKNTNSTDSAY 227
+ + ++ W+ S I A +F+ SN I +++N T S Y
Sbjct: 209 FNIGIILCIISWILSLIITSPAYFIFEASN-----IIFSAQDSNETISNY 253
>gnl|CDD|222479 pfam13967, RSN1_TM, Late exocytosis, associated with Golgi
transport. This family represents the first three
transmembrane regions of 11-TM proteins involved in
vesicle transport. In S. cerevisiae these proteins are
members of the yeast facilitator superfamily and are
integral membrane proteins localised to the cell
periphery, in particular to the bud-neck region. The
distribution is consistent with a role in late
exocytosis which is in agreement with the proteins'
ability to substitute for the function of Sro7p,
required for the sorting of the protein Enap1 into
Golgi-derived vesicles destined for the cell surface.
Length = 151
Score = 32.1 bits (74), Expect = 0.14
Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
Query: 180 LSTATKIMVVGWVYSIAMAALPLFDVSNYSKTSICLPMKNTNSTDS----AYLIFLLLFN 235
L KI +VG V + LP+ +T + + S A+++ +F
Sbjct: 83 LKMGIKIFLVGCVIGWPIL-LPVNATGGNGETGLDKLSISNVVEGSNRLWAHVVVAYIFT 141
Query: 236 GLAFWMI 242
G +++
Sbjct: 142 GFVCYLL 148
>gnl|CDD|165177 PHA02834, PHA02834, chemokine receptor-like protein; Provisional.
Length = 323
Score = 33.0 bits (75), Expect = 0.15
Identities = 44/189 (23%), Positives = 87/189 (46%), Gaps = 16/189 (8%)
Query: 71 IAALVGNLAVLLVLISSRFRMTVPKFLMCNLAFADFCMGLYLIMIAIMDVRSIGDYFNHA 130
I L+GN+ V+ VLI RF V +L N+A +D + I D + ++
Sbjct: 40 IFGLIGNVLVIAVLIVKRFMFVVDVYLF-NIAMSDLMLVFSFPFIIHND---LNEWIFGE 95
Query: 131 IYWQRGMGCQMAGFLTVFSSVLSIFTLTVITCERWYTITYAIHLNRRLKLSTATKIMVVG 190
+ +G GF + ++F +T+I+ +R+ + A + + +S + + V
Sbjct: 96 FMCKLVLGVYFVGFFS------NMFFVTLISIDRYILVVNATKIKNK-SISLSVLLSVAA 148
Query: 191 WVYSI--AMAALPLFDVSNYSKTSICL-PMKNTNSTDSAYLIFLLLFNGLAFWMICA--C 245
WV S+ +M A+ L+ V N C+ + N + SA+ F + G+ +I C
Sbjct: 149 WVCSVILSMPAMVLYYVDNTDNLKQCIFNDYHENFSWSAFFNFEINIFGIVIPLIILIYC 208
Query: 246 YARMYSSIR 254
Y+++ +++
Sbjct: 209 YSKILYTLK 217
>gnl|CDD|145503 pfam02392, Ycf4, Ycf4. This family consists of hypothetical Ycf4
proteins from various chloroplast genomes. It has been
suggested that Ycf4 is involved in the assembly and/or
stability of the photosystem I complex in chloroplasts.
Length = 180
Score = 30.2 bits (69), Expect = 0.71
Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 13/79 (16%)
Query: 63 RVSVWFVAIAALVGNLAVLLVLISSRFRMTVPKFL-------------MCNLAFADFCMG 109
R S +F A L+G L LLV ISS + FL MC A +
Sbjct: 15 RFSNYFWASILLLGGLGFLLVGISSYLGKNLLPFLDPSQIIFIPQGLVMCFYGIAGLLLS 74
Query: 110 LYLIMIAIMDVRSIGDYFN 128
LYL + +V S + F+
Sbjct: 75 LYLWLTIFWNVGSGYNEFD 93
>gnl|CDD|239657 cd03685, ClC_6_like, ClC-6-like chloride channel proteins. This CD
includes ClC-6, ClC-7 and ClC-B, C, D in plants.
Proteins in this family are ubiquitous in eukarotes and
their functions are unclear. They are expressed in
intracellular organelles membranes. This family belongs
to the ClC superfamily of chloride ion channels, which
share the unique double-barreled architecture and
voltage-dependent gating mechanism. The gating is
conferred by the permeating anion itself, acting as the
gating charge. ClC chloride ion channel superfamily
perform a variety of functions including cellular
excitability regulation, cell volume regulation,
membrane potential stabilization, acidification of
intracellular organelles, signal transduction, and
transepithelial transport in animals.
Length = 466
Score = 30.7 bits (70), Expect = 0.90
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 110 LYLIMIAIMDVRSIGDYFNHAIY 132
L IM+ +M + +GDYFN IY
Sbjct: 425 LPPIMLVLMIAKWVGDYFNEGIY 447
>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
Family protein. [Transport and binding proteins,
Other].
Length = 617
Score = 27.7 bits (62), Expect = 8.0
Identities = 21/94 (22%), Positives = 31/94 (32%), Gaps = 24/94 (25%)
Query: 141 MAGFLTVFSSVLSIFTLTVITCERWY-TITYAIHLNRRLKLSTATKIMVVGWVYSIAMAA 199
+ + VF++ L +F T Y Y + +A
Sbjct: 408 VFPVINVFTAELPVFLRE--TRSGLYRVSAYFLAKT---------------------IAE 444
Query: 200 LPLFDVSNYSKTSICLPMKNTNSTDSAYLIFLLL 233
LPLF + TSI M S + +L FL L
Sbjct: 445 LPLFIILPALFTSITYWMIGLRSGATHFLTFLFL 478
>gnl|CDD|233013 TIGR00540, TPR_hemY_coli, heme biosynthesis-associated TPR
protein. Members of this protein family are
uncharacterized tetratricopeptide repeat (TPR) proteins
invariably found in heme biosynthesis gene clusters.
The absence of any invariant residues other than Ala
argues against this protein serving as an enzyme per
se. The gene symbol hemY assigned in E. coli is
unfortunate in that an unrelated protein,
protoporphyrinogen oxidase (HemG in E. coli) is
designated HemY in Bacillus subtilis [Unknown function,
General].
Length = 367
Score = 27.3 bits (61), Expect = 9.0
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Query: 57 MGNWALRVSVWFVAIAALVGNLAVLLV---LISSRFRMT 92
+ + +S+ F + LV VL + LI FR+
Sbjct: 13 YPPYRIELSLNF-FVLLLVLLFVVLYILLRLIRRVFRLP 50
>gnl|CDD|237685 PRK14355, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 459
Score = 27.4 bits (61), Expect = 9.4
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 24 GARVNATCGTLSKNYHEVRCH 44
G VN CGT++ NY V+ H
Sbjct: 376 GRNVNIGCGTITCNYDGVKKH 396
>gnl|CDD|202582 pfam03248, Rer1, Rer1 family. RER1 family protein are involved in
involved in the retrieval of some endoplasmic reticulum
membrane proteins from the early golgi compartment. The
C terminus of yeast Rer1p interacts with a coatomer
complex.
Length = 175
Score = 26.8 bits (60), Expect = 9.9
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 147 VFSSVLSIFTLTVITCERWYTITYA--IHL 174
F +L +F L VI + WY + YA I+L
Sbjct: 31 FFLFLLFLFILRVILAQGWYVVCYALGIYL 60
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.330 0.138 0.444
Gapped
Lambda K H
0.267 0.0753 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,068,309
Number of extensions: 1218873
Number of successful extensions: 1548
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1536
Number of HSP's successfully gapped: 55
Length of query: 262
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 167
Effective length of database: 6,723,972
Effective search space: 1122903324
Effective search space used: 1122903324
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 58 (26.1 bits)