RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12217
(262 letters)
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 99 bits (249), Expect = 3e-24
Identities = 36/193 (18%), Positives = 75/193 (38%), Gaps = 13/193 (6%)
Query: 68 FVAIAALVGNLAVLLVLISSRFRMTVPKFLMCNLAFADFCMGLYLIMIAIMDVRSIGDYF 127
I GN V+ + ++ T + NLAF+DF + F
Sbjct: 43 ICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTF-----SLVNGFPLMTISCF 97
Query: 128 NHAIYWQRG-MGCQMAGFLTVFSSVLSIFTLTVITCERWYTITYAIHLNRRLKLSTATKI 186
W G C++ GF+ +SI T+ +I+ +R+ I + ++++ A +
Sbjct: 98 LK--KWIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIM 155
Query: 187 MVVGWVYSIAMAALPLFDVSNY----SKTSICLPMKNTNSTDSAYLIFLLLFN-GLAFWM 241
++ W++S+ A P+F Y + + +ST + ++ + + +
Sbjct: 156 IIFVWLWSVLWAIGPIFGWGAYTLEGVLCNCSFDYISRDSTTRSNILCMFILGFFGPILI 215
Query: 242 ICACYARMYSSIR 254
I CY + S+
Sbjct: 216 IFFCYFNIVMSVS 228
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
protei photoreceptor, signaling protein; HET: MAN NAG
BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
...
Length = 349
Score = 92.1 bits (229), Expect = 7e-22
Identities = 38/196 (19%), Positives = 82/196 (41%), Gaps = 17/196 (8%)
Query: 68 FVAIAALVGNLAVLLVLISSRFRMTVPKFLMCNLAFADFCMGLYLIMIAIMDVRSIGDYF 127
+ + N L V + + T +++ NLA AD M+ ++
Sbjct: 47 LLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADL------FMVFGGFTTTLYTSL 100
Query: 128 NHAIYWQRG-MGCQMAGFLTVFSSVLSIFTLTVITCERWYTITYAIHLNRRLKLSTATKI 186
+ Y+ G GC + GF +++++L V+ ER+ + + N R + A
Sbjct: 101 HG--YFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMS-NFRFGENHAIMG 157
Query: 187 MVVGWVYSIAMAALPLFDVSNYS----KTS--ICLPMKNTNSTDSAYLIFLLLFN-GLAF 239
+ WV ++A AA PL S Y + S I + + + +++I++ + + +
Sbjct: 158 VAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPL 217
Query: 240 WMICACYARMYSSIRG 255
+I CY ++ +++
Sbjct: 218 IVIFFCYGQLVFTVKE 233
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 73.9 bits (182), Expect = 2e-15
Identities = 35/197 (17%), Positives = 82/197 (41%), Gaps = 21/197 (10%)
Query: 68 FVAIAALVGNLAVLLVLISSRFRM-TVPKFLMCNLAFADFCMGLYLIMIAIMDVRSIGDY 126
+ + ++VGN+ V+ ++++ + RM TV + + NLAFA+ M + ++
Sbjct: 41 VIVVTSVVGNVVVMWIILAHK-RMRTVTNYFLVNLAFAEASMAAFNTVVNFT------YA 93
Query: 127 FNHAIYWQRG-MGCQMAGFLTVFSSVLSIFTLTVITCERWYTITYAIHLNRRLKLSTATK 185
++ W G C+ F + + SI+++T + +R+ I + L RL +
Sbjct: 94 VHN--EWYYGLFYCKFHNFFPIAAVFASIYSMTAVAFDRYMAIIH--PLQPRLSATATKV 149
Query: 186 IMVVGWVYSIAMAALPLF---DVSNYSKTSICLPMKNTNSTDSAYLIFLLLFNGLAFWM- 241
++ V WV ++ + A P +C+ + ++ + L +++
Sbjct: 150 VICVIWVLALLL-AFPQGYYSTTETMPSRVVCMIEWPEHPNKIYEKVYHICVTVLIYFLP 208
Query: 242 ---ICACYARMYSSIRG 255
I Y + ++
Sbjct: 209 LLVIGYAYTVVGITLWA 225
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 74.5 bits (182), Expect = 2e-15
Identities = 38/190 (20%), Positives = 66/190 (34%), Gaps = 17/190 (8%)
Query: 68 FVAIAALVGNLAVLLVLISSRFRMTVPKFLMCNLAFADFCMGLYLIMIAIMDVRSIGDYF 127
+ ++ N+ VLL + ++ + + NLA +D G+ ++
Sbjct: 72 LICCFIILENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYTANLLLSGA------ 125
Query: 128 NHAIYWQRGMGCQMAGFLTVFSSVLSIFTLTVITCERWYTITYAIHLNRRLKLSTATKIM 187
Y + + S+F+L I ER+ T+ N I
Sbjct: 126 --TTYKLTPAQWFLREGSMFVALSASVFSLLAIAIERYITMLKMKLHNGSNNFRLFLLIS 183
Query: 188 VVGWVYSIAMAALPLF---DVSNYSKTSICLPMKNTNSTDSAYLIFLLLFNGLAFWMICA 244
WV S+ + LP+ +S S S LP+ Y++F L I
Sbjct: 184 AC-WVISLILGGLPIMGWNCISALSSCSTVLPL-----YHKHYILFCTTVFTLLLLSIVI 237
Query: 245 CYARMYSSIR 254
Y R+YS +R
Sbjct: 238 LYCRIYSLVR 247
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
network, structural genomics, GPCR membrane 7TM NOP ORL1
cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
sapiens}
Length = 434
Score = 69.5 bits (170), Expect = 8e-14
Identities = 43/197 (21%), Positives = 72/197 (36%), Gaps = 19/197 (9%)
Query: 67 WFVAIAALVGNLAVLLVLISSRFRMTVPKFLMCNLAFADFCMGLYLIMIAIMDVRSIGDY 126
V + L+GN V+ V++ T + NLA AD + L L D
Sbjct: 133 LAVCVGGLLGNCLVMYVILRHTKMKTATNIYIFNLALADTLVLLTLPFQGT-------DI 185
Query: 127 FNHAIYWQRG-MGCQMAGFLTVFSSVLSIFTLTVITCERWYTITYAIHLNRRLKLSTATK 185
+W G C+ + ++ S FTLT ++ +R+ I + I S A
Sbjct: 186 LLG--FWPFGNALCKTVIAIDYYNMFTSTFTLTAMSVDRYVAICHPIRALDVRTSSKAQA 243
Query: 186 IMVVGWVYSIAMAALPLF---DVSNYSKTSICLPMKNTNSTDSAYLIFLLLFNGLAFWM- 241
+ V W + + +P+ + CL T D +F + +F +
Sbjct: 244 VNVAIWALASVV-GVPVAIMGSAQVEDEEIECLVEIPTPQ-DYWGPVFAICIFLFSFIVP 301
Query: 242 ---ICACYARMYSSIRG 255
I CY+ M +RG
Sbjct: 302 VLVISVCYSLMIRRLRG 318
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural
genomics, PSI-2, protein structure initiative; HET: ITD
OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A*
3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Length = 502
Score = 68.4 bits (167), Expect = 2e-13
Identities = 37/194 (19%), Positives = 74/194 (38%), Gaps = 18/194 (9%)
Query: 67 WFVAIAALVGNLAVLLVLISSRFRMTVPKFLMCNLAFADFCMGLYLIMIAIMDVRSIGDY 126
+ + +VGN V+LV+ + ++ +L+ AD + L A+
Sbjct: 56 SIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVITLPFWAV--------- 106
Query: 127 FNHAIYWQRGMG-CQMAGFLTVFSSVLSIFTLTVITCERWYTITYAIHLNRRLKLSTATK 185
+ W G C+ + + S++ L I+ +R+ I +A + R KL
Sbjct: 107 -DAVANWYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKV 165
Query: 186 IMVVGWVYSIAMAALPLF---DVSNYSKTSICLPMKNTNSTDSAYLIFLLLFNGLA--FW 240
+ V W+ ++ +P F +VS IC + + ++ GL
Sbjct: 166 VYVGVWIPALL-LTIPDFIFANVSEADDRYICDRFYPNDLWVVVFQFQHIMV-GLILPGI 223
Query: 241 MICACYARMYSSIR 254
+I +CY + S +
Sbjct: 224 VILSCYCIIISKLS 237
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled
receptor, 7 transmembrane receptor, signal
protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A
{Mus musculus} PDB: 4ej4_A* 4djh_A*
Length = 464
Score = 68.1 bits (166), Expect = 2e-13
Identities = 38/208 (18%), Positives = 72/208 (34%), Gaps = 19/208 (9%)
Query: 55 DLMGNWALRVSVWFVAIAALVGNLAVLLVLISSRFRMTVPKFLMCNLAFADFCMGLYLIM 114
++ + V + L GN V+ V++ T + NLA AD L
Sbjct: 13 SMVTAITIMALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALATSTLPF 72
Query: 115 IAIMDVRSIGDYFNHAIYWQRGMG-CQMAGFLTVFSSVLSIFTLTVITCERWYTITYAIH 173
++ +Y W G C++ + ++ SIFTL ++ +R+ + + +
Sbjct: 73 QSV-------NYLMG--TWPFGNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVK 123
Query: 174 LNRRLKLSTATKIMVVGWVYSIAMAALPLF---DVSNYSKTSICLPMKNTNSTDSAYLIF 230
A + V W+ S A+ LP+ + C + + +
Sbjct: 124 ALDFRTPRNAKIVNVCNWILSSAI-GLPVMFMATTKYRQGSIDCTLTFSHPTWYW-ENLL 181
Query: 231 LLLFNGLAFWM----ICACYARMYSSIR 254
+ AF M I CY M ++
Sbjct: 182 KICVFIFAFIMPVLIITVCYGLMILRLK 209
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor,
nanobody, G protein-coupled RE GPCR, signal
transduction, G protein signaling; HET: P0G; 3.20A
{Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A
Length = 514
Score = 66.1 bits (161), Expect = 1e-12
Identities = 43/216 (19%), Positives = 89/216 (41%), Gaps = 35/216 (16%)
Query: 52 PCEDLMGNWALRVSVWFVAIAALVGNLAVLLVLIS-SRFRM--TVPKFLMCNLAFADFCM 108
D + + + + + +A + GN+ LV+ + ++F TV + + +LA AD M
Sbjct: 175 YAADEVWVVGMGIVMSLIVLAIVFGNV---LVITAIAKFERLQTVTNYFITSLACADLVM 231
Query: 109 GLYLIMIAIMDVRSIGDYFNHAIYWQRGMGCQMAGFLTVFSSVLSIFTLTVITCERWYTI 168
GL ++ + + +W C+ + V SI TL VI +R++ I
Sbjct: 232 GLAVVPFGA--AHILTKTWTFGNFW-----CEFWTSIDVLCVTASIETLCVIAVDRYFAI 284
Query: 169 TYAIHLNRRLKLSTATKIMVVGWVYSIAMAALPLF----------DVSNYSKTSICLPMK 218
T L + A I+++ W+ S + LP+ ++ Y++ + C
Sbjct: 285 TSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFT 344
Query: 219 NTNSTDSAYLIFLLLFNGLAFW----MICACYARMY 250
N Y I + ++F+ ++ Y+R++
Sbjct: 345 NQA-----YAIASSI---VSFYVPLVIMVFVYSRVF 372
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Length = 488
Score = 63.6 bits (154), Expect = 9e-12
Identities = 38/204 (18%), Positives = 73/204 (35%), Gaps = 30/204 (14%)
Query: 68 FVAIAALVGNLAVLLVLISSRFRMTVPKFLMCNLAFADFCMGLYLIM---IAIMDVRSIG 124
+A+ A++GN+ V + + V + + +LA AD +G+ L + I I
Sbjct: 30 AIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGV-LAIPFAITIS------ 82
Query: 125 DYFNHAIYWQRG-MGCQMAGFLTVFSSVLSIFTLTVITCERWYTITYAIHLNRRLKLSTA 183
+ GC + + SIF+L I +R+ I + N + + A
Sbjct: 83 ------TGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRA 136
Query: 184 TKIMVVGWVYSIAMAALPLF--------DVSNYSKTSICLPMKNTNSTDSAYLIFLLLFN 235
I+ + WV S A+ P+ D + +++ FN
Sbjct: 137 KGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFN 196
Query: 236 GLA-FWM----ICACYARMYSSIR 254
A + + Y R++ + R
Sbjct: 197 FFACVLVPLLLMLGVYLRIFLAAR 220
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
PSI-2, protein structure initiative, AC technologies
center for gene to 3D structure; HET: ETQ MAL; 2.89A
{Homo sapiens}
Length = 481
Score = 61.7 bits (149), Expect = 4e-11
Identities = 36/195 (18%), Positives = 76/195 (38%), Gaps = 24/195 (12%)
Query: 68 FVAIAALVGNLAVLLVLISSRFRMTVPKFLMCNLAFADFCMGLYLIMIAIMDVRSIGDYF 127
+ +A + GN V + ++ R T +L+ +LA AD + +M +
Sbjct: 47 ALILAIVFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVAT-----LVMPWVVYLEVT 101
Query: 128 NHAIYWQRGMG-CQMAGFLTVFSSVLSIFTLTVITCERWYTITYAIHLNRRLKLSTA--T 184
W C + L V SI+ L I+ +R+ + +H S+
Sbjct: 102 GG--VWNFSRICCDVFVTLDVMMCTASIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRV 159
Query: 185 KIMVVG-WVYSIAMAALPLFDVSNYSKTSICLPMKNTNSTDSAYLIFLLLFNGLAFWM-- 241
+M+ WV + A++ LF + ++C ++ ++I+ + +F++
Sbjct: 160 ALMITAVWVLAFAVSCPLLFGFNTTGDPTVCS------ISNPDFVIYSSVV---SFYLPF 210
Query: 242 --ICACYARMYSSIR 254
YAR+Y ++
Sbjct: 211 GVTVLVYARIYVVLK 225
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR
BETA1-adrenoceptor, stabilising mutat biased agonist;
HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A*
2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A*
2ycx_A* 2ycy_A* 2ycz_A*
Length = 315
Score = 60.1 bits (146), Expect = 7e-11
Identities = 40/205 (19%), Positives = 73/205 (35%), Gaps = 37/205 (18%)
Query: 68 FVAIAALVGNLAVLLVLIS-SRFRM--TVPKFLMCNLAFADFCMGLYLIMIAIMDVRSIG 124
V + + GN+ LV+ + + T+ + +LA AD +GL ++ +
Sbjct: 20 LVVLLIVAGNV---LVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGA--TLVVR 74
Query: 125 DYFNHAIYWQRG-MGCQMAGFLTVFSSVLSIFTLTVITCERWYTITYAIHLNRRLKLSTA 183
W G C++ L V SI TL VI +R+ IT + + A
Sbjct: 75 GT------WLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARA 128
Query: 184 TKIMVVGWVYSIAMAALPLF----------DVSNYSKTSICLPMKNTNSTDSAYLIFLLL 233
I+ W S ++ LP+ + Y C + N Y I +
Sbjct: 129 KVIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRA-----YAIASSI 183
Query: 234 FNGLAFW----MICACYARMYSSIR 254
++F+ ++ R+Y +
Sbjct: 184 ---ISFYIPLLIMIFVALRVYREAK 205
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 60.1 bits (145), Expect = 1e-10
Identities = 35/206 (16%), Positives = 72/206 (34%), Gaps = 34/206 (16%)
Query: 68 FVAIAALVGNLAVLLVLISSRFRMTVPKFLMCNLAFADFCMGLYLIM---IAIMDVRSIG 124
+A+ A++GN+ V + + V + + +LA AD +G+ L + I I
Sbjct: 40 AIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGV-LAIPFAITIS------ 92
Query: 125 DYFNHAIYWQRGMG-CQMAGFLTVFSSVLSIFTLTVITCERWYTITYAIHLNRRLKLSTA 183
+ C + + SIF+L I +R+ I + N + + A
Sbjct: 93 ------TGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRA 146
Query: 184 TKIMVVGWVYSIAMAALPLF-----------DVSNYSKTSICLPMKNTNSTDSAYLIFLL 232
I+ + WV S A+ P+ + + + Y+++
Sbjct: 147 KGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFN 206
Query: 233 LFNGLAFWM----ICACYARMYSSIR 254
F + + Y R++ + R
Sbjct: 207 FF--ACVLVPLLLMLGVYLRIFLAAR 230
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex,
leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A
{Homo sapiens} PDB: 1xwd_C*
Length = 350
Score = 56.4 bits (136), Expect = 2e-09
Identities = 17/31 (54%), Positives = 19/31 (61%)
Query: 33 TLSKNYHEVRCHPAPDAFNPCEDLMGNWALR 63
L +V C P PDAFNPCED+MG LR
Sbjct: 320 DLCNEVVDVTCSPKPDAFNPCEDIMGYNILR 350
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion,
lipidic cubic phase, lipidic, mesophase, cholesterol,
membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo
sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A*
3pds_A*
Length = 500
Score = 55.1 bits (132), Expect = 7e-09
Identities = 49/253 (19%), Positives = 98/253 (38%), Gaps = 41/253 (16%)
Query: 20 NNLSGARVNATCGTLSKNYHEVRCHPAPDAFNPCEDLMGNWALRVSVWFVAIAALVGNLA 79
++ G N + L+ N H + + + + + + +A + GN+
Sbjct: 5 DDAMGQPGNGSAFLLAPNRSHAPDHDVTQQRDEVWVV----GMGIVMSLIVLAIVFGNVL 60
Query: 80 VLL-VLISSRFRMTVPKFLMCNLAFADFCMGLYLIM--IAIMDVRSIGDYFNHAIYWQRG 136
V+ + R + TV + + +LA AD MGL ++ A + W G
Sbjct: 61 VITAIAKFERLQ-TVTNYFITSLACADLVMGL-AVVPFGAAHILMK---------MWTFG 109
Query: 137 MG-CQMAGFLTVFSSVLSIFTLTVITCERWYTITYAIHLNRRLKLSTATKIMVVGWVYSI 195
C+ + V SI TL VI +R++ IT L + A I+++ W+ S
Sbjct: 110 NFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSG 169
Query: 196 AMAALPLF----------DVSNYSKTSICLPMKNTNSTDSAYLIFLLLFNGLAFWM---- 241
+ LP+ ++ Y++ + C N AY I + ++F++
Sbjct: 170 LTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQ-----AYAIASSI---VSFYVPLVI 221
Query: 242 ICACYARMYSSIR 254
+ Y+R++ +
Sbjct: 222 MVFVYSRVFQEAK 234
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G
protein-coupled receptor, GPCR, SI protein-antagonist
complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Length = 467
Score = 53.6 bits (128), Expect = 2e-08
Identities = 33/196 (16%), Positives = 74/196 (37%), Gaps = 22/196 (11%)
Query: 68 FVAIAALVGNLAVLLVLISSRFRMTVPKFLMCNLAFADFCMGLYLIM--IAIMDVRSIGD 125
+++ ++GN+ V++ + +R TV + + +LA AD +G+ M + V
Sbjct: 32 SLSLVTIIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGV-FSMNLYTLYTVIG--- 87
Query: 126 YFNHAIYWQRGMG-CQMAGFLTVFSSVLSIFTLTVITCERWYTITYAIHLNRRLKLSTAT 184
YW G C + L S S+ L +I+ +R++ +T + + A
Sbjct: 88 ------YWPLGPVVCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPLTYPVKRTTKMAG 141
Query: 185 KIMVVGWVYSIAMAALPLFDVSNYSKTSICLPMKNT--NSTDSAYLIFLLLFNGLAFWM- 241
++ WV S + A + + +++A + AF++
Sbjct: 142 MMIAAAWVLSFILWAPAILFWQFIVGVRTVEDGECYIQFFSNAAVTFGTAIA---AFYLP 198
Query: 242 ---ICACYARMYSSIR 254
+ Y + + +
Sbjct: 199 VIIMTVLYWHISRASK 214
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics,
PSI-biology, membrane protein, GPCR NET GPCR, hydrolase;
HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Length = 452
Score = 50.5 bits (120), Expect = 2e-07
Identities = 30/197 (15%), Positives = 71/197 (36%), Gaps = 24/197 (12%)
Query: 68 FVAIAALVGNLAVLL-VLISSRFRMTVPKFLMCNLAFADFCMGLYLIM--IAIMDVRSIG 124
+ + + NL VL V + TV + +L+ AD +G ++M + + S
Sbjct: 17 TICLVTVGLNLLVLYAVRSERKLH-TVGNLYIVSLSVADLIVGA-VVMPMNILYLLMS-- 72
Query: 125 DYFNHAIYWQRGMG-CQMAGFLTVFSSVLSIFTLTVITCERWYTITYAIHLNRRLKLSTA 183
W G C + +S SIF++ ++ +R+ ++ + + + A
Sbjct: 73 -------KWSLGRPLCLFWLSMDYVASTASIFSVFILCIDRYRSVQQPLRYLKYRTKTRA 125
Query: 184 TKIMVVGWVYSIAMAALPLF--DVSNYSKTSICLPMKNTNSTDSAYLIFLLLFNGLAFWM 241
+ ++ W S L + + + + + + F++
Sbjct: 126 SATILGAWFLSFLWVIPILGWNHFMQQTSVRREDKCETDFYDVTWFKVMTAII---NFYL 182
Query: 242 ----ICACYARMYSSIR 254
+ YA++Y ++R
Sbjct: 183 PTLLMLWFYAKIYKAVR 199
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.9 bits (64), Expect = 2.2
Identities = 19/136 (13%), Positives = 38/136 (27%), Gaps = 49/136 (36%)
Query: 34 LSKNYHEVRCHPAPDAFNPCEDLMGNWALRV-SVWF--------------VAIAALVGNL 78
+ +NY + D E + S F A+ +
Sbjct: 1684 IRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLM--EK 1741
Query: 79 AVLLVLISSRFRMTVPKFLMCNLAFADFCMGLYLIMIAIMDVRSIGDYFNHAIYWQRGMG 138
A L + + +P + FA G S+G+Y A+
Sbjct: 1742 AAFEDL---KSKGLIPA----DATFA----GH-----------SLGEY--AAL------- 1770
Query: 139 CQMAGFLTVFSSVLSI 154
+A ++ S++ +
Sbjct: 1771 ASLADVMS-IESLVEV 1785
>1ym3_A Carbonic anhydrase (carbonate dehydratase) (carbo dehydratase); Zn
protein, structural proteomics in europe, spine,
structur genomics; 1.75A {Mycobacterium tuberculosis}
PDB: 2a5v_A
Length = 215
Score = 27.4 bits (61), Expect = 4.7
Identities = 5/22 (22%), Positives = 8/22 (36%)
Query: 185 KIMVVGWVYSIAMAALPLFDVS 206
+ +VG Y + L D
Sbjct: 187 SLAIVGVTYQLDDGRAVLRDHI 208
>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein;
NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A
Length = 32
Score = 24.3 bits (53), Expect = 6.6
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 153 SIFTLTVITCERWYTITYAIHLNRR 177
SI L I+ +R+++IT AI N +
Sbjct: 3 SIVHLCAISLDRYWSITQAIEYNLK 27
>2w3q_A Carbonic anhydrase 2; lyase, inhibition, sulfonamide; 1.34A
{Cryptococcus neoformans} PDB: 2w3n_A
Length = 243
Score = 26.3 bits (58), Expect = 9.7
Identities = 9/60 (15%), Positives = 22/60 (36%), Gaps = 11/60 (18%)
Query: 147 VFSSVLSIFTLTVITCERWYTITYAIHLNRRLKLSTATKIMVVGWVYSIAMAALPLFDVS 206
V +V ++ I W + + ++ V GW+Y ++ + +V+
Sbjct: 181 VKMAVKNVVNSPTIQ-GAW----------EQARKGEFREVFVHGWLYDLSTGNIVDLNVT 229
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.330 0.138 0.444
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,955,075
Number of extensions: 222513
Number of successful extensions: 430
Number of sequences better than 10.0: 1
Number of HSP's gapped: 402
Number of HSP's successfully gapped: 27
Length of query: 262
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 170
Effective length of database: 4,133,061
Effective search space: 702620370
Effective search space used: 702620370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 56 (25.8 bits)