RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12217
         (262 letters)



>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 348

 Score = 49.6 bits (117), Expect = 1e-07
 Identities = 25/186 (13%), Positives = 50/186 (26%), Gaps = 1/186 (0%)

Query: 62  LRVSVWFVAIAALVGNLAVLLVLISSRFRMTVPKFLMCNLAFADFCMGLYLIMIAIMDVR 121
           L   ++ + +     N   L V +  +   T   +++ NLA AD  M        +    
Sbjct: 40  LAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSL 99

Query: 122 SIGDYFNHAIYWQRGMGCQMAGFLTVFS-SVLSIFTLTVITCERWYTITYAIHLNRRLKL 180
                F        G    + G + ++S  VL+I    V+            H    +  
Sbjct: 100 HGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAF 159

Query: 181 STATKIMVVGWVYSIAMAALPLFDVSNYSKTSICLPMKNTNSTDSAYLIFLLLFNGLAFW 240
           +    +             +P     +          +  N +   Y+  +     L   
Sbjct: 160 TWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVI 219

Query: 241 MICACY 246
             C   
Sbjct: 220 FFCYGQ 225


>d1i6pa_ c.53.2.1 (A:) beta-carbonic anhydrase {Escherichia coli
           [TaxId: 562]}
          Length = 214

 Score = 27.8 bits (61), Expect = 1.0
 Identities = 8/29 (27%), Positives = 15/29 (51%)

Query: 185 KIMVVGWVYSIAMAALPLFDVSNYSKTSI 213
           K+ + GW Y I    L   DV+  ++ ++
Sbjct: 172 KVTIHGWAYGIHDGLLRDLDVTATNRETL 200


>d1tska_ g.3.7.2 (A:) Toxin ts kappa {Scorpion (Tityus serrulatus)
          [TaxId: 6887]}
          Length = 35

 Score = 24.2 bits (52), Expect = 2.7
 Identities = 7/17 (41%), Positives = 13/17 (76%)

Query: 42 RCHPAPDAFNPCEDLMG 58
          RC+ +PD ++ C+ L+G
Sbjct: 6  RCYRSPDCYSACKKLVG 22


>d1ekja_ c.53.2.1 (A:) beta-carbonic anhydrase {Pea (Pisum sativum)
           [TaxId: 3888]}
          Length = 210

 Score = 26.3 bits (57), Expect = 3.4
 Identities = 3/21 (14%), Positives = 8/21 (38%)

Query: 185 KIMVVGWVYSIAMAALPLFDV 205
            + + G  Y     +  L+ +
Sbjct: 180 TLALKGGYYDFVKGSFELWGL 200


>d1jeyb1 b.131.1.2 (B:242-545) Ku80 subunit middle domain {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 304

 Score = 26.4 bits (58), Expect = 3.8
 Identities = 5/39 (12%), Positives = 10/39 (25%), Gaps = 2/39 (5%)

Query: 69  VAIAALV--GNLAVLLVLISSRFRMTVPKFLMCNLAFAD 105
           VAI            + +     +      +   L F +
Sbjct: 149 VAIVRYAYDKRANPQVGVAFPHIKHNYECLVYVQLPFME 187


>d1ddza2 c.53.2.1 (A:326-564) beta-carbonic anhydrase {Red alga
           (Porphyridium purpureum) [TaxId: 35688]}
          Length = 239

 Score = 25.8 bits (56), Expect = 5.1
 Identities = 6/22 (27%), Positives = 9/22 (40%)

Query: 185 KIMVVGWVYSIAMAALPLFDVS 206
           ++ V G VY +    L    V 
Sbjct: 210 ELEVQGVVYGVGDGKLRDMGVV 231


>d1vkza2 c.30.1.1 (A:4-93) Glycinamide ribonucleotide synthetase
          (GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]}
          Length = 90

 Score = 24.5 bits (53), Expect = 5.5
 Identities = 8/31 (25%), Positives = 12/31 (38%)

Query: 23 SGARVNATCGTLSKNYHEVRCHPAPDAFNPC 53
          SG R +A     +K  +EV  +P        
Sbjct: 8  SGGREHAIGWAFAKQGYEVHFYPGNAGTKRD 38


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.330    0.138    0.444 

Gapped
Lambda     K      H
   0.267   0.0446    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 962,767
Number of extensions: 41279
Number of successful extensions: 129
Number of sequences better than 10.0: 1
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 9
Length of query: 262
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 178
Effective length of database: 1,254,276
Effective search space: 223261128
Effective search space used: 223261128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 52 (24.5 bits)