BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1222
(60 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|332031609|gb|EGI71081.1| LSM domain-containing protein 1-A [Acromyrmex echinatior]
Length = 115
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/58 (70%), Positives = 43/58 (74%), Gaps = 9/58 (15%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
MTDGRVL G FLCTDRDANVILGSC EYLS E EAR+LGLVMVPG+HI
Sbjct: 60 MTDGRVLRGAFLCTDRDANVILGSCTEYLSTE---------HTEARVLGLVMVPGRHI 108
>gi|390335271|ref|XP_001198253.2| PREDICTED: LSM domain-containing protein 1-like [Strongylocentrotus
purpuratus]
Length = 122
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 43/58 (74%), Gaps = 5/58 (8%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
MTDGR LVGTF+CTD+D NVILGSC EY++P KE E R+LGL MVPGQHI
Sbjct: 57 MTDGRTLVGTFICTDKDRNVILGSCEEYVNPPDSPEKE-----EPRVLGLAMVPGQHI 109
>gi|380029708|ref|XP_003698509.1| PREDICTED: LSM domain-containing protein 1-A-like [Apis florea]
Length = 103
Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 43/58 (74%), Gaps = 9/58 (15%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
MTDGRVL+G FLCTDRDANVILGSC E+LS + EAR LGLVM+PG+HI
Sbjct: 48 MTDGRVLIGAFLCTDRDANVILGSCSEFLSED---------HTEARTLGLVMIPGRHI 96
>gi|110760136|ref|XP_001120034.1| PREDICTED: LSM domain-containing protein 1-A-like [Apis
mellifera]
Length = 103
Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 43/58 (74%), Gaps = 9/58 (15%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
MTDGRVL+G FLCTDRDANVILGSC E+LS + EAR LGLVM+PG+HI
Sbjct: 48 MTDGRVLIGAFLCTDRDANVILGSCSEFLSED---------HTEARTLGLVMIPGRHI 96
>gi|91081025|ref|XP_975319.1| PREDICTED: similar to GA16583-PA [Tribolium castaneum]
gi|270005993|gb|EFA02441.1| hypothetical protein TcasGA2_TC008128 [Tribolium castaneum]
Length = 134
Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 45/61 (73%), Gaps = 9/61 (14%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENG---AQEARLLGLVMVPGQH 57
M DGRVLVG FLCTDRDANVILGSC EYL E+NG +E R+LGLVMVPG+H
Sbjct: 51 MFDGRVLVGVFLCTDRDANVILGSCTEYL------PAEDNGDGTIEEPRMLGLVMVPGKH 104
Query: 58 I 58
I
Sbjct: 105 I 105
>gi|340719457|ref|XP_003398170.1| PREDICTED: LSM domain-containing protein 1-A-like [Bombus
terrestris]
gi|350410451|ref|XP_003489044.1| PREDICTED: LSM domain-containing protein 1-A-like [Bombus
impatiens]
Length = 101
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/58 (63%), Positives = 43/58 (74%), Gaps = 9/58 (15%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
MTDGR+L+G FLCTDRDANVILGSC E+LS + EAR LGLVM+PG+HI
Sbjct: 46 MTDGRILIGAFLCTDRDANVILGSCSEFLSED---------HTEARTLGLVMIPGRHI 94
>gi|357624151|gb|EHJ75030.1| putative small nuclear ribonucleoprotein, core [Danaus plexippus]
Length = 105
Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 39/59 (66%), Positives = 45/59 (76%), Gaps = 8/59 (13%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENG-AQEARLLGLVMVPGQHI 58
MTDGRVL+G FLCTDRDANVILG+C EYL K +G +E R+LGLVMVPG+HI
Sbjct: 36 MTDGRVLIGVFLCTDRDANVILGACSEYL-------KSSDGETEEPRVLGLVMVPGRHI 87
>gi|307192774|gb|EFN75864.1| LSM domain-containing protein 1 [Harpegnathos saltator]
Length = 56
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 43/58 (74%), Gaps = 9/58 (15%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
MTDGRVL G FLCTDRDANVILGSC E+LS E EAR+LGLVMVPG+HI
Sbjct: 1 MTDGRVLRGAFLCTDRDANVILGSCTEFLSTE---------HTEARVLGLVMVPGRHI 49
>gi|345491540|ref|XP_001607580.2| PREDICTED: LSM domain-containing protein 1-like [Nasonia
vitripennis]
Length = 109
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 42/58 (72%), Gaps = 10/58 (17%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
MTDGR+L G FLCTDRDANVILG C EYLS EN EAR LGLVMVPG+HI
Sbjct: 55 MTDGRILTGAFLCTDRDANVILGLCSEYLS--------ENS--EARALGLVMVPGRHI 102
>gi|383847078|ref|XP_003699182.1| PREDICTED: LSM domain-containing protein 1-like [Megachile
rotundata]
Length = 101
Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/58 (63%), Positives = 43/58 (74%), Gaps = 9/58 (15%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
MTDGRVL+G FLCTDRDANVILG+C E+LS + EAR LGLVM+PG+HI
Sbjct: 46 MTDGRVLMGAFLCTDRDANVILGTCSEFLSED---------HTEARNLGLVMIPGRHI 94
>gi|291234910|ref|XP_002737389.1| PREDICTED: Small Nuclear Ribonucleoprotein family member
(snr-2)-like [Saccoglossus kowalevskii]
Length = 97
Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/58 (63%), Positives = 43/58 (74%), Gaps = 5/58 (8%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
MTDGR L+GTFLCTD++ NVILGSC EY++P KE E R+LGL MVPGQHI
Sbjct: 30 MTDGRTLIGTFLCTDQERNVILGSCEEYVNPPDTTEKE-----EPRVLGLAMVPGQHI 82
>gi|405956668|gb|EKC23115.1| LSM domain-containing protein 1 [Crassostrea gigas]
Length = 73
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/58 (60%), Positives = 40/58 (68%), Gaps = 5/58 (8%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
MTDGR L+G FLCTDR+ NVILG C EYL P E N +E R+LGL M+PG HI
Sbjct: 5 MTDGRTLIGVFLCTDRERNVILGGCEEYLKP-----LEGNEKEEPRILGLAMIPGHHI 57
>gi|281352211|gb|EFB27795.1| hypothetical protein PANDA_013884 [Ailuropoda melanoleuca]
Length = 170
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 39/58 (67%), Gaps = 5/58 (8%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
MTDGR LVG FLCTDRD NVILGS E+L P + A E R+LGL MVPG HI
Sbjct: 102 MTDGRTLVGCFLCTDRDCNVILGSAQEFLKP-----SDSFSAGEPRVLGLAMVPGHHI 154
>gi|301778219|ref|XP_002924513.1| PREDICTED: LSM domain-containing protein 1-like [Ailuropoda
melanoleuca]
Length = 180
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 39/58 (67%), Gaps = 5/58 (8%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
MTDGR LVG FLCTDRD NVILGS E+L P + A E R+LGL MVPG HI
Sbjct: 112 MTDGRTLVGCFLCTDRDCNVILGSAQEFLKP-----SDSFSAGEPRVLGLAMVPGHHI 164
>gi|40254988|ref|NP_115732.2| LSM domain-containing protein 1 precursor [Homo sapiens]
gi|21707073|gb|AAH33861.1| LSM domain containing 1 [Homo sapiens]
gi|123993229|gb|ABM84216.1| LSM domain containing 1 [synthetic construct]
gi|123993287|gb|ABM84245.1| LSM domain containing 1 [synthetic construct]
gi|124000249|gb|ABM87633.1| LSM domain containing 1 [synthetic construct]
Length = 173
Score = 70.9 bits (172), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 39/58 (67%), Gaps = 5/58 (8%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
MTDGR LVG FLCTDRD NVILGS E+L P + A E R+LGL MVPG HI
Sbjct: 105 MTDGRTLVGCFLCTDRDCNVILGSAQEFLKP-----SDSFSAGEPRVLGLAMVPGHHI 157
>gi|297271841|ref|XP_002800325.1| PREDICTED: LSM domain-containing protein 1-like isoform 2 [Macaca
mulatta]
Length = 165
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 39/58 (67%), Gaps = 5/58 (8%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
MTDGR LVG FLCTDRD NVILGS E+L P + A E R+LGL MVPG HI
Sbjct: 97 MTDGRTLVGCFLCTDRDCNVILGSAQEFLKP-----SDSFSAGEPRVLGLAMVPGHHI 149
>gi|348560985|ref|XP_003466293.1| PREDICTED: LSM domain-containing protein 1-like [Cavia porcellus]
Length = 125
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 39/58 (67%), Gaps = 5/58 (8%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
MTDGR LVG FLCTDRD NVILGS E+L P + A E R+LGL MVPG HI
Sbjct: 57 MTDGRTLVGCFLCTDRDCNVILGSAQEFLKP-----SDSFSAGEPRVLGLAMVPGHHI 109
>gi|242012261|ref|XP_002426852.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212511065|gb|EEB14114.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 84
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/57 (63%), Positives = 42/57 (73%), Gaps = 6/57 (10%)
Query: 2 TDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+GRVL+G FLCTDRDANVILGSC EYL +E+ +E R LGLVMVPG+HI
Sbjct: 26 VNGRVLIGIFLCTDRDANVILGSCSEYL------REEDCFTEEPRGLGLVMVPGRHI 76
>gi|57086383|ref|XP_536626.1| PREDICTED: LSM domain-containing protein 1 [Canis lupus familiaris]
Length = 125
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 39/58 (67%), Gaps = 5/58 (8%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
MTDGR LVG FLCTDRD NVILGS E+L P + A E R+LGL MVPG HI
Sbjct: 57 MTDGRTLVGCFLCTDRDCNVILGSAQEFLKP-----SDSFSAGEPRVLGLAMVPGHHI 109
>gi|380800811|gb|AFE72281.1| LSM domain-containing protein 1 precursor, partial [Macaca
mulatta]
Length = 83
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 39/58 (67%), Gaps = 5/58 (8%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
MTDGR LVG FLCTDRD NVILGS E+L P + A E R+LGL MVPG HI
Sbjct: 15 MTDGRTLVGCFLCTDRDCNVILGSAQEFLKP-----SDSFSAGEPRVLGLAMVPGHHI 67
>gi|156105886|gb|ABU49308.1| LSM domain-containing 1 [Rattus norvegicus]
gi|156105888|gb|ABU49309.1| LSM domain-containing 1 [Rattus norvegicus]
gi|156105890|gb|ABU49310.1| LSM domain-containing 1 [Rattus norvegicus]
gi|156105892|gb|ABU49311.1| LSM domain-containing 1 [Rattus norvegicus]
gi|156105894|gb|ABU49312.1| LSM domain-containing 1 [Rattus norvegicus]
Length = 98
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 39/58 (67%), Gaps = 5/58 (8%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
MTDGR LVG FLCTDRD NVILGS E+L P + A E R+LGL MVPG HI
Sbjct: 30 MTDGRTLVGCFLCTDRDCNVILGSAQEFLKP-----SDSFSAGEPRVLGLAMVPGHHI 82
>gi|311268325|ref|XP_003131997.1| PREDICTED: LSM domain-containing protein 1-like [Sus scrofa]
gi|311268343|ref|XP_003132008.1| PREDICTED: LSM domain-containing protein 1-like [Sus scrofa]
Length = 125
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 39/58 (67%), Gaps = 5/58 (8%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
MTDGR LVG FLCTDRD NVILGS E+L P + A E R+LGL MVPG HI
Sbjct: 57 MTDGRTLVGCFLCTDRDCNVILGSAQEFLKP-----SDSFSAGEPRVLGLAMVPGHHI 109
>gi|417395957|gb|JAA45012.1| Putative u1 snrnp component [Desmodus rotundus]
Length = 125
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 39/58 (67%), Gaps = 5/58 (8%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
MTDGR LVG FLCTDRD NVILGS E+L P + A E R+LGL MVPG HI
Sbjct: 57 MTDGRTLVGCFLCTDRDCNVILGSAQEFLKP-----SDSFSAGEPRVLGLAMVPGHHI 109
>gi|109113155|ref|XP_001110847.1| PREDICTED: LSM domain-containing protein 1-like isoform 1 [Macaca
mulatta]
gi|296201341|ref|XP_002747989.1| PREDICTED: LSM domain-containing protein 1 isoform 2 [Callithrix
jacchus]
gi|397477498|ref|XP_003810107.1| PREDICTED: LSM domain-containing protein 1 [Pan paniscus]
gi|402898664|ref|XP_003912340.1| PREDICTED: LSM domain-containing protein 1 [Papio anubis]
gi|426384017|ref|XP_004058573.1| PREDICTED: LSM domain-containing protein 1 [Gorilla gorilla
gorilla]
Length = 125
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 39/58 (67%), Gaps = 5/58 (8%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
MTDGR LVG FLCTDRD NVILGS E+L P + A E R+LGL MVPG HI
Sbjct: 57 MTDGRTLVGCFLCTDRDCNVILGSAQEFLKP-----SDSFSAGEPRVLGLAMVPGHHI 109
>gi|358417343|ref|XP_003583616.1| PREDICTED: LSM domain-containing protein 1 [Bos taurus]
gi|359076759|ref|XP_003587461.1| PREDICTED: LSM domain-containing protein 1 [Bos taurus]
Length = 126
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 39/58 (67%), Gaps = 5/58 (8%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
MTDGR LVG FLCTDRD NVILGS E+L P + A E R+LGL MVPG HI
Sbjct: 58 MTDGRTLVGCFLCTDRDCNVILGSAQEFLKP-----SDSFSAGEPRVLGLAMVPGHHI 110
>gi|395836474|ref|XP_003791179.1| PREDICTED: LSM domain-containing protein 1 [Otolemur garnettii]
Length = 125
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 39/58 (67%), Gaps = 5/58 (8%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
MTDGR LVG FLCTDRD NVILGS E+L P + A E R+LGL MVPG HI
Sbjct: 57 MTDGRTLVGCFLCTDRDCNVILGSAQEFLKP-----SDSFSAGEPRVLGLAMVPGHHI 109
>gi|410979731|ref|XP_003996235.1| PREDICTED: LSM domain-containing protein 1 [Felis catus]
Length = 125
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 39/58 (67%), Gaps = 5/58 (8%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
MTDGR LVG FLCTDRD NVILGS E+L P + A E R+LGL MVPG HI
Sbjct: 57 MTDGRTLVGCFLCTDRDCNVILGSAQEFLKP-----SDSFSAGEPRVLGLAMVPGHHI 109
>gi|291405113|ref|XP_002718823.1| PREDICTED: LSM domain containing 1-like [Oryctolagus cuniculus]
gi|355700158|gb|AES01359.1| MAK31-like protein [Mustela putorius furo]
gi|431894028|gb|ELK03834.1| LSM domain-containing protein 1 [Pteropus alecto]
Length = 125
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 39/58 (67%), Gaps = 5/58 (8%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
MTDGR LVG FLCTDRD NVILGS E+L P + A E R+LGL MVPG HI
Sbjct: 57 MTDGRTLVGCFLCTDRDCNVILGSAQEFLKP-----SDSFSAGEPRVLGLAMVPGHHI 109
>gi|332251100|ref|XP_003274684.1| PREDICTED: LSM domain-containing protein 1 [Nomascus leucogenys]
Length = 125
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 39/58 (67%), Gaps = 5/58 (8%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
MTDGR LVG FLCTDRD NVILGS E+L P + A E R+LGL MVPG HI
Sbjct: 57 MTDGRTLVGCFLCTDRDCNVILGSAQEFLKP-----SDSFSAGEPRVLGLAMVPGHHI 109
>gi|74732854|sp|Q9BRA0.1|LSMD1_HUMAN RecName: Full=LSM domain-containing protein 1; AltName:
Full=Phosphonoformate immuno-associated protein 2
gi|13623585|gb|AAH06407.1| LSMD1 protein [Homo sapiens]
gi|30353999|gb|AAH51846.1| LSMD1 protein [Homo sapiens]
gi|33329087|gb|AAQ09944.1| phosphonoformate immuno-associated protein 2 [Homo sapiens]
gi|37805285|gb|AAH59944.1| LSMD1 protein [Homo sapiens]
gi|119610529|gb|EAW90123.1| LSM domain containing 1 [Homo sapiens]
Length = 125
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 39/58 (67%), Gaps = 5/58 (8%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
MTDGR LVG FLCTDRD NVILGS E+L P + A E R+LGL MVPG HI
Sbjct: 57 MTDGRTLVGCFLCTDRDCNVILGSAQEFLKP-----SDSFSAGEPRVLGLAMVPGHHI 109
>gi|281485631|ref|NP_001099264.2| LSM domain containing 1 [Rattus norvegicus]
gi|149053044|gb|EDM04861.1| similar to hypothetical protein MGC14151 (predicted), isoform CRA_b
[Rattus norvegicus]
Length = 125
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 39/58 (67%), Gaps = 5/58 (8%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
MTDGR LVG FLCTDRD NVILGS E+L P + A E R+LGL MVPG HI
Sbjct: 57 MTDGRTLVGCFLCTDRDCNVILGSAQEFLKP-----SDSFSAGEPRVLGLAMVPGHHI 109
>gi|58037525|ref|NP_084359.1| LSM domain-containing protein 1 [Mus musculus]
gi|81904908|sp|Q9D2U5.1|LSMD1_MOUSE RecName: Full=LSM domain-containing protein 1
gi|12858676|dbj|BAB31406.1| unnamed protein product [Mus musculus]
gi|38328385|gb|AAH62267.1| LSM domain containing 1 [Mus musculus]
gi|148678551|gb|EDL10498.1| LSM domain containing 1 [Mus musculus]
Length = 125
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 39/58 (67%), Gaps = 5/58 (8%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
MTDGR LVG FLCTDRD NVILGS E+L P + A E R+LGL MVPG HI
Sbjct: 57 MTDGRTLVGCFLCTDRDCNVILGSAQEFLKP-----SDSFSAGEPRVLGLAMVPGHHI 109
>gi|149724269|ref|XP_001504842.1| PREDICTED: LSM domain-containing protein 1-like isoform 1 [Equus
caballus]
Length = 125
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 39/58 (67%), Gaps = 5/58 (8%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
MTDGR LVG FLCTDRD NVILGS E+L P + A E R+LGL MVPG HI
Sbjct: 57 MTDGRTLVGCFLCTDRDCNVILGSAQEFLKP-----SDSFSAGEPRVLGLAMVPGHHI 109
>gi|426237552|ref|XP_004012723.1| PREDICTED: LSM domain-containing protein 1 [Ovis aries]
Length = 126
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 39/58 (67%), Gaps = 5/58 (8%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
MTDGR LVG FLCTDRD NVILGS E+L P + A E R+LGL MVPG HI
Sbjct: 58 MTDGRTLVGCFLCTDRDCNVILGSAQEFLKP-----SDSFSAGEPRVLGLAMVPGHHI 110
>gi|351701584|gb|EHB04503.1| LSM domain-containing protein 1 [Heterocephalus glaber]
Length = 125
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 39/58 (67%), Gaps = 5/58 (8%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
MTDGR LVG FLCTDRD NVILGS E+L P + A E R+LGL MVPG HI
Sbjct: 57 MTDGRTLVGCFLCTDRDCNVILGSAQEFLKP-----TDSFSAGEPRVLGLAMVPGHHI 109
>gi|432105625|gb|ELK31819.1| LSM domain-containing protein 1 [Myotis davidii]
Length = 158
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 39/58 (67%), Gaps = 5/58 (8%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
MTDGR LVG FLCTDRD NVILGS E+L P + A E R+LGL MVPG HI
Sbjct: 90 MTDGRTLVGCFLCTDRDCNVILGSAQEFLKP-----SDSFSAGEPRVLGLAMVPGHHI 142
>gi|116283909|gb|AAH48499.1| Lsmd1 protein [Mus musculus]
gi|149053043|gb|EDM04860.1| similar to hypothetical protein MGC14151 (predicted), isoform
CRA_a [Rattus norvegicus]
gi|149053045|gb|EDM04862.1| similar to hypothetical protein MGC14151 (predicted), isoform
CRA_a [Rattus norvegicus]
gi|149053046|gb|EDM04863.1| similar to hypothetical protein MGC14151 (predicted), isoform
CRA_a [Rattus norvegicus]
Length = 73
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 39/58 (67%), Gaps = 5/58 (8%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
MTDGR LVG FLCTDRD NVILGS E+L P + A E R+LGL MVPG HI
Sbjct: 5 MTDGRTLVGCFLCTDRDCNVILGSAQEFLKP-----SDSFSAGEPRVLGLAMVPGHHI 57
>gi|327288762|ref|XP_003229094.1| PREDICTED: LSM domain-containing protein 1-like [Anolis
carolinensis]
Length = 123
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 40/58 (68%), Gaps = 5/58 (8%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
MTDGR LVG FLCTDRD NVILGS EYL ++ + A E R+LGL MVPG HI
Sbjct: 55 MTDGRTLVGCFLCTDRDCNVILGSAQEYL-----KASDSFSAGEPRVLGLAMVPGHHI 107
>gi|240848617|ref|NP_001155443.1| LSM domain containing 1-like [Acyrthosiphon pisum]
gi|239792439|dbj|BAH72562.1| ACYPI001828 [Acyrthosiphon pisum]
Length = 115
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 43/56 (76%), Gaps = 6/56 (10%)
Query: 3 DGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
DGR+LVGTF+CTD+DA++IL +C EY F K+ N E+RLLGLVM+PG+HI
Sbjct: 43 DGRILVGTFVCTDKDAHIILSTCYEY-----FNEKDLNTG-ESRLLGLVMIPGRHI 92
>gi|395533471|ref|XP_003768783.1| PREDICTED: LSM domain-containing protein 1 [Sarcophilus harrisii]
Length = 125
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 39/58 (67%), Gaps = 5/58 (8%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
MTDGR LVG FLCTDRD NVILGS E+L P + A E R+LGL MVPG HI
Sbjct: 58 MTDGRTLVGCFLCTDRDCNVILGSAQEFLKP-----TDSFSAGEPRVLGLAMVPGHHI 110
>gi|126309134|ref|XP_001364629.1| PREDICTED: LSM domain-containing protein 1-like [Monodelphis
domestica]
Length = 126
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 39/58 (67%), Gaps = 5/58 (8%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
MTDGR LVG FLCTDRD NVILGS E+L P + A E R+LGL MVPG HI
Sbjct: 58 MTDGRTLVGCFLCTDRDCNVILGSAQEFLKP-----TDSFSAGEPRVLGLAMVPGHHI 110
>gi|391345948|ref|XP_003747243.1| PREDICTED: LSM domain-containing protein 1-like [Metaseiulus
occidentalis]
Length = 130
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 42/58 (72%), Gaps = 5/58 (8%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
++DGR+L+G FLC DRD N+I+G+C EYLS + E A +AR LGL M+PG+HI
Sbjct: 50 ISDGRILIGVFLCVDRDINLIIGNCNEYLSED-----EMKQAVDARYLGLAMIPGKHI 102
>gi|221132073|ref|XP_002159433.1| PREDICTED: LSM domain-containing protein 1-A-like [Hydra
magnipapillata]
Length = 117
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 42/60 (70%), Gaps = 3/60 (5%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHIPA 60
+TDGR L+G FLCTD+D N+ILGSC E+ S E E E +E R+LGL MVPG+H+
Sbjct: 32 ITDGRTLIGQFLCTDKDENIILGSCQEF-SGEQIEG--EQKTEEPRILGLAMVPGRHVKT 88
>gi|350606341|ref|NP_001234910.1| LSM domain-containing protein 1 [Pan troglodytes]
Length = 173
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/58 (60%), Positives = 40/58 (68%), Gaps = 5/58 (8%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
MTDGR LVG FLCTDRD NVILGS E+L ++ + A E R+LGL MVPG HI
Sbjct: 105 MTDGRTLVGCFLCTDRDCNVILGSAQEFL-----KASDSFSAGEPRVLGLAMVPGHHI 157
>gi|403274992|ref|XP_003929244.1| PREDICTED: LSM domain-containing protein 1 [Saimiri boliviensis
boliviensis]
Length = 125
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/58 (60%), Positives = 38/58 (65%), Gaps = 5/58 (8%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
MTDGR LVG FLCTDRD NVILGS E+L P + E R+LGL MVPG HI
Sbjct: 57 MTDGRTLVGCFLCTDRDCNVILGSAQEFLKP-----SDSFSVGEPRVLGLAMVPGHHI 109
>gi|444722917|gb|ELW63589.1| LSM domain-containing protein 1 [Tupaia chinensis]
Length = 125
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/58 (60%), Positives = 38/58 (65%), Gaps = 5/58 (8%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
MTDGR LVG FLCTDRD NVILGS E+L P + E R+LGL MVPG HI
Sbjct: 57 MTDGRTLVGCFLCTDRDCNVILGSAQEFLKP-----SDSFSPGEPRVLGLAMVPGHHI 109
>gi|443692843|gb|ELT94348.1| hypothetical protein CAPTEDRAFT_79884, partial [Capitella teleta]
Length = 78
Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 41/59 (69%), Gaps = 4/59 (6%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYL-SPEVFESKEENGAQEARLLGLVMVPGQHI 58
MTDGR L+G FLCTDRD N+ILGSC E+L SP + S E R LGL M+PG+HI
Sbjct: 13 MTDGRTLIGVFLCTDRDRNIILGSCQEFLKSPGSYTS---CAPGEPRTLGLAMIPGRHI 68
>gi|148231734|ref|NP_001085519.1| LSM domain-containing protein 1-A [Xenopus laevis]
gi|82184579|sp|Q6GQ67.1|LMD1A_XENLA RecName: Full=LSM domain-containing protein 1-A
gi|49115058|gb|AAH72881.1| MGC80306 protein [Xenopus laevis]
Length = 113
Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/58 (58%), Positives = 39/58 (67%), Gaps = 5/58 (8%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
MTDGR L+G FLCTDRD NVILGS E+L P + +E R+LGL MVPG HI
Sbjct: 45 MTDGRSLIGCFLCTDRDCNVILGSAQEFLRP-----SDSFPVREPRVLGLAMVPGHHI 97
>gi|50797119|ref|XP_423923.1| PREDICTED: LSM domain-containing protein 1 [Gallus gallus]
Length = 96
Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/58 (56%), Positives = 40/58 (68%), Gaps = 5/58 (8%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
M+DGR LVG FLCTDRDAN+ILGS E+L ++ + E R+LGL MVPG HI
Sbjct: 29 MSDGRTLVGAFLCTDRDANIILGSAQEFL-----KAADAFPGSEPRVLGLAMVPGHHI 81
>gi|432920168|ref|XP_004079871.1| PREDICTED: LSM domain-containing protein 1-like [Oryzias latipes]
Length = 112
Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 40/59 (67%), Gaps = 7/59 (11%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYL-SPEVFESKEENGAQEARLLGLVMVPGQHI 58
MTDGR LVG FLCTDRD NVILGS E+L SP+ F E R+LGL M+PG H+
Sbjct: 40 MTDGRTLVGLFLCTDRDCNVILGSAQEFLKSPDTFSQG------EPRVLGLAMIPGHHV 92
>gi|451958100|ref|NP_001263428.1| LSM domain-containing protein 1 [Xenopus (Silurana) tropicalis]
gi|156630952|sp|A4IGZ4.2|LSMD1_XENTR RecName: Full=LSM domain-containing protein 1
Length = 113
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/58 (58%), Positives = 39/58 (67%), Gaps = 5/58 (8%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
MTDGR L+G FLCTDRD NVILGS E+L P + +E R+LGL MVPG HI
Sbjct: 45 MTDGRSLIGCFLCTDRDCNVILGSAQEFLRP-----SDSFPVREPRVLGLAMVPGHHI 97
>gi|148230773|ref|NP_001084541.1| LSM domain-containing protein 1-B [Xenopus laevis]
gi|82185514|sp|Q6NU60.1|LMD1B_XENLA RecName: Full=LSM domain-containing protein 1-B
gi|46250206|gb|AAH68740.1| MGC81227 protein [Xenopus laevis]
Length = 111
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/58 (58%), Positives = 39/58 (67%), Gaps = 5/58 (8%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
MTDGR L+G FLCTDRD NVILGS E+L P + +E R+LGL MVPG HI
Sbjct: 45 MTDGRSLIGCFLCTDRDCNVILGSAQEFLRP-----SDSFRIREPRVLGLAMVPGHHI 97
>gi|326931150|ref|XP_003211697.1| PREDICTED: LSM domain-containing protein 1-like [Meleagris
gallopavo]
Length = 134
Score = 68.2 bits (165), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/58 (56%), Positives = 40/58 (68%), Gaps = 5/58 (8%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
M+DGR LVG FLCTDRDAN+ILGS E+L ++ + E R+LGL MVPG HI
Sbjct: 67 MSDGRTLVGAFLCTDRDANIILGSAQEFL-----KAADAFPGSEPRVLGLAMVPGHHI 119
>gi|134025385|gb|AAI35308.1| lsmd1 protein [Xenopus (Silurana) tropicalis]
Length = 128
Score = 68.2 bits (165), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/58 (58%), Positives = 39/58 (67%), Gaps = 5/58 (8%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
MTDGR L+G FLCTDRD NVILGS E+L P + +E R+LGL MVPG HI
Sbjct: 60 MTDGRSLIGCFLCTDRDCNVILGSAQEFLRP-----SDSFPVREPRVLGLAMVPGHHI 112
>gi|66771181|gb|AAY54902.1| IP06106p [Drosophila melanogaster]
Length = 121
Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/58 (60%), Positives = 38/58 (65%), Gaps = 10/58 (17%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+TDGRVLVG F CTDRDAN++L C EYL QE RLLG VMVPGQHI
Sbjct: 57 ITDGRVLVGFFNCTDRDANIVLSMCAEYLV----------EGQEPRLLGNVMVPGQHI 104
>gi|194855165|ref|XP_001968488.1| GG24897 [Drosophila erecta]
gi|190660355|gb|EDV57547.1| GG24897 [Drosophila erecta]
Length = 121
Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/58 (60%), Positives = 38/58 (65%), Gaps = 10/58 (17%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+TDGRVLVG F CTDRDAN++L C EYL QE RLLG VMVPGQHI
Sbjct: 57 ITDGRVLVGFFNCTDRDANIVLSMCAEYLV----------EGQEPRLLGNVMVPGQHI 104
>gi|195470911|ref|XP_002087750.1| GE18190 [Drosophila yakuba]
gi|194173851|gb|EDW87462.1| GE18190 [Drosophila yakuba]
Length = 121
Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/58 (60%), Positives = 38/58 (65%), Gaps = 10/58 (17%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+TDGRVLVG F CTDRDAN++L C EYL QE RLLG VMVPGQHI
Sbjct: 57 ITDGRVLVGFFNCTDRDANIVLSMCAEYLV----------EGQEPRLLGNVMVPGQHI 104
>gi|195342127|ref|XP_002037653.1| GM18377 [Drosophila sechellia]
gi|194132503|gb|EDW54071.1| GM18377 [Drosophila sechellia]
Length = 121
Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/58 (60%), Positives = 38/58 (65%), Gaps = 10/58 (17%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+TDGRVLVG F CTDRDAN++L C EYL QE RLLG VMVPGQHI
Sbjct: 57 ITDGRVLVGFFNCTDRDANIVLSMCAEYLVE----------GQEPRLLGNVMVPGQHI 104
>gi|198431582|ref|XP_002129571.1| PREDICTED: similar to LSM domain containing 1 [Ciona
intestinalis]
Length = 92
Score = 67.8 bits (164), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/58 (56%), Positives = 41/58 (70%), Gaps = 5/58 (8%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
M+DGR LVG FLCTD+ NVILGS EYL+ E+N ++ R+LGL MVPG+HI
Sbjct: 32 MSDGRTLVGQFLCTDQAKNVILGSAQEYLN-----YSEDNCKEDPRMLGLAMVPGKHI 84
>gi|24581280|ref|NP_722859.1| CG31950, isoform A [Drosophila melanogaster]
gi|442625602|ref|NP_001259971.1| CG31950, isoform B [Drosophila melanogaster]
gi|22945342|gb|AAN10396.1| CG31950, isoform A [Drosophila melanogaster]
gi|201065911|gb|ACH92365.1| FI06540p [Drosophila melanogaster]
gi|440213240|gb|AGB92508.1| CG31950, isoform B [Drosophila melanogaster]
Length = 121
Score = 67.4 bits (163), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 35/58 (60%), Positives = 38/58 (65%), Gaps = 10/58 (17%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+TDGRVLVG F CTDRDAN++L C EYL QE RLLG VMVPGQHI
Sbjct: 57 ITDGRVLVGFFNCTDRDANIVLSMCAEYLVE----------GQEPRLLGNVMVPGQHI 104
>gi|195576189|ref|XP_002077959.1| GD23192 [Drosophila simulans]
gi|194189968|gb|EDX03544.1| GD23192 [Drosophila simulans]
Length = 121
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/58 (60%), Positives = 38/58 (65%), Gaps = 10/58 (17%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+TDGRVLVG F CTDRDAN++L C EYL QE RLLG VMVPGQHI
Sbjct: 57 ITDGRVLVGFFNCTDRDANIVLSMCAEYLVE----------GQEPRLLGNVMVPGQHI 104
>gi|348523756|ref|XP_003449389.1| PREDICTED: LSM domain-containing protein 1-like [Oreochromis
niloticus]
Length = 112
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/58 (56%), Positives = 39/58 (67%), Gaps = 5/58 (8%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
MTDGR LVG FLCTDRD NVILGS E+L +S + E R+LGL M+PG H+
Sbjct: 40 MTDGRTLVGLFLCTDRDCNVILGSAQEFL-----KSTDTFSQSEPRVLGLAMIPGHHV 92
>gi|225715680|gb|ACO13686.1| LSM domain-containing protein 1 [Esox lucius]
Length = 115
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/58 (56%), Positives = 39/58 (67%), Gaps = 5/58 (8%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
MTDGR LVG FLCTDRD NVILGS E+L +S + E R+LGL M+PG H+
Sbjct: 43 MTDGRTLVGLFLCTDRDCNVILGSAQEFL-----KSSDSFSQGEPRVLGLAMIPGHHV 95
>gi|221221384|gb|ACM09353.1| LSM domain-containing protein 1 [Salmo salar]
Length = 113
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/58 (56%), Positives = 39/58 (67%), Gaps = 5/58 (8%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
MTDGR LVG FLCTDRD NVILGS E+L +S + E R+LGL M+PG H+
Sbjct: 41 MTDGRTLVGLFLCTDRDCNVILGSAQEFL-----KSSDSFSQGEPRVLGLAMIPGHHV 93
>gi|213511656|ref|NP_001134433.1| LSM domain-containing protein 1 [Salmo salar]
gi|209733240|gb|ACI67489.1| LSM domain-containing protein 1 [Salmo salar]
Length = 113
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/58 (56%), Positives = 39/58 (67%), Gaps = 5/58 (8%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
MTDGR LVG FLCTDRD NVILGS E+L +S + E R+LGL M+PG H+
Sbjct: 41 MTDGRTLVGLFLCTDRDCNVILGSAQEFL-----KSSDSFSQGEPRVLGLAMIPGHHV 93
>gi|410907029|ref|XP_003966994.1| PREDICTED: LSM domain-containing protein 1-like [Takifugu
rubripes]
Length = 112
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/58 (56%), Positives = 39/58 (67%), Gaps = 5/58 (8%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
MTDGR LVG FLCTDRD NVILGS E+L +S + E R+LGL M+PG H+
Sbjct: 40 MTDGRTLVGLFLCTDRDCNVILGSAQEFL-----KSTDTFSQGEPRVLGLAMIPGHHV 92
>gi|152012515|gb|AAI50238.1| Unknown (protein for IMAGE:8128378) [Danio rerio]
Length = 116
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/58 (56%), Positives = 39/58 (67%), Gaps = 5/58 (8%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
MTDGR LVG FLCTDRD NVILGS E+L +S + E R+LGL M+PG H+
Sbjct: 47 MTDGRTLVGLFLCTDRDCNVILGSAQEFL-----KSTDSLSQGEPRVLGLAMIPGHHV 99
>gi|195438038|ref|XP_002066944.1| GK19354 [Drosophila willistoni]
gi|194163029|gb|EDW77930.1| GK19354 [Drosophila willistoni]
Length = 126
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/58 (56%), Positives = 39/58 (67%), Gaps = 8/58 (13%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
++DGR+LVG F CTDRDAN++L C EYL E QE RLLG VMVPG+HI
Sbjct: 60 ISDGRILVGFFNCTDRDANIVLSMCAEYLV--------EGEGQEPRLLGNVMVPGKHI 109
>gi|255069768|ref|NP_001153763.1| LSM domain-containing protein 1 [Danio rerio]
gi|156630951|sp|A2BIG9.1|LSMD1_DANRE RecName: Full=LSM domain-containing protein 1
Length = 109
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/58 (56%), Positives = 39/58 (67%), Gaps = 5/58 (8%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
MTDGR LVG FLCTDRD NVILGS E+L +S + E R+LGL M+PG H+
Sbjct: 40 MTDGRTLVGLFLCTDRDCNVILGSAQEFL-----KSTDSLSQGEPRVLGLAMIPGHHV 92
>gi|195161948|ref|XP_002021818.1| GL26293 [Drosophila persimilis]
gi|194103618|gb|EDW25661.1| GL26293 [Drosophila persimilis]
Length = 131
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/58 (58%), Positives = 38/58 (65%), Gaps = 10/58 (17%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+TDGRVLVG F CTDRDAN++L C EYL QE RLLG VMVPG+HI
Sbjct: 56 ITDGRVLVGFFNCTDRDANIVLSMCAEYLVE----------GQEPRLLGNVMVPGKHI 103
>gi|47227438|emb|CAG04586.1| unnamed protein product [Tetraodon nigroviridis]
Length = 100
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/58 (56%), Positives = 39/58 (67%), Gaps = 5/58 (8%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
MTDGR LVG FLCTDRD NVILGS E+L +S + E R+LGL M+PG H+
Sbjct: 37 MTDGRTLVGLFLCTDRDCNVILGSAQEFL-----KSTDTFSQGEPRVLGLAMIPGHHV 89
>gi|198473040|ref|XP_001356154.2| GA16583 [Drosophila pseudoobscura pseudoobscura]
gi|198139272|gb|EAL33214.2| GA16583 [Drosophila pseudoobscura pseudoobscura]
Length = 131
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/58 (58%), Positives = 38/58 (65%), Gaps = 10/58 (17%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+TDGRVLVG F CTDRDAN++L C EYL QE RLLG VMVPG+HI
Sbjct: 56 ITDGRVLVGFFNCTDRDANIVLSMCAEYLVE----------GQEPRLLGNVMVPGKHI 103
>gi|225712124|gb|ACO11908.1| LSM domain-containing protein 1 [Lepeophtheirus salmonis]
Length = 119
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 42/60 (70%), Gaps = 9/60 (15%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHIPA 60
++DGR + GTFLCTDRDANVIL +C EY+ E+ A ++ LGLV+VPG+HI +
Sbjct: 24 LSDGRHVEGTFLCTDRDANVILSACTEYV---------EDSAAGSKFLGLVLVPGKHIKS 74
>gi|225712414|gb|ACO12053.1| LSM domain-containing protein 1 [Lepeophtheirus salmonis]
Length = 119
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 42/60 (70%), Gaps = 9/60 (15%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHIPA 60
++DGR + GTFLCTDRDANVIL +C EY+ E+ A ++ LGLV+VPG+HI +
Sbjct: 24 LSDGRHVEGTFLCTDRDANVILSACTEYV---------EDSAAGSKFLGLVLVPGKHIKS 74
>gi|194759384|ref|XP_001961929.1| GF15217 [Drosophila ananassae]
gi|190615626|gb|EDV31150.1| GF15217 [Drosophila ananassae]
Length = 120
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/58 (56%), Positives = 38/58 (65%), Gaps = 10/58 (17%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+TDGRVL+G F CTDRDAN++L C EYL QE RLLG VMVPG+HI
Sbjct: 56 ITDGRVLIGFFNCTDRDANIVLSMCAEYLV----------EGQEPRLLGNVMVPGKHI 103
>gi|157118205|ref|XP_001659059.1| small nuclear ribonucleoprotein, core, putative [Aedes aegypti]
gi|108875784|gb|EAT40009.1| AAEL008228-PA [Aedes aegypti]
Length = 120
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 41/58 (70%), Gaps = 10/58 (17%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
MTDGR+L+G F+CTD DANVILG E+ ENG +E R+LGLVM+PG++I
Sbjct: 59 MTDGRILIGMFVCTDADANVILGMTSEFT---------ENGGEE-RVLGLVMIPGRYI 106
>gi|318037236|ref|NP_001187334.1| LSM domain-containing protein 1 [Ictalurus punctatus]
gi|308322743|gb|ADO28509.1| lsm domain-containing protein 1 [Ictalurus punctatus]
Length = 103
Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 38/58 (65%), Gaps = 5/58 (8%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
MTDGR L+G FLCTDRD NVILGS E+L + + E R+LGL M+PG H+
Sbjct: 36 MTDGRTLLGLFLCTDRDCNVILGSAQEFL-----RTTDSFSQAEPRVLGLAMIPGHHV 88
>gi|170065347|ref|XP_001867901.1| LSM domain containing 1 [Culex quinquefasciatus]
gi|167882418|gb|EDS45801.1| LSM domain containing 1 [Culex quinquefasciatus]
Length = 111
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 40/58 (68%), Gaps = 10/58 (17%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
M+DGR+L+G F+CTD DANVILG EY E G +E R+LGLVM+PG++I
Sbjct: 50 MSDGRILIGMFVCTDADANVILGLTSEYT---------EQGGEE-RILGLVMIPGRYI 97
>gi|156339571|ref|XP_001620201.1| hypothetical protein NEMVEDRAFT_v1g148799 [Nematostella
vectensis]
gi|156204779|gb|EDO28101.1| predicted protein [Nematostella vectensis]
Length = 86
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 10/63 (15%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEY---LSPEVFESKEENGAQEARLLGLVMVPGQH 57
++DGR L+G+FLCTD+D N+ILGSC E+ LS V ++ R+LGL MVPG+H
Sbjct: 16 ISDGRTLIGSFLCTDKDRNIILGSCQEFSLLLSLGV-------DKEDPRILGLAMVPGRH 68
Query: 58 IPA 60
I +
Sbjct: 69 IQS 71
>gi|241745625|ref|XP_002412445.1| LSM domain-containing protein, putative [Ixodes scapularis]
gi|215505844|gb|EEC15338.1| LSM domain-containing protein, putative [Ixodes scapularis]
Length = 65
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 25/32 (78%), Positives = 28/32 (87%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPE 32
M+DGR L+GTFLCTDRD NVILGSC E+L PE
Sbjct: 25 MSDGRTLIGTFLCTDRDQNVILGSCSEFLKPE 56
>gi|195030776|ref|XP_001988223.1| GH10685 [Drosophila grimshawi]
gi|193904223|gb|EDW03090.1| GH10685 [Drosophila grimshawi]
Length = 123
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 36/58 (62%), Gaps = 10/58 (17%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+TDGRVLVG F CTDRDAN++L C EYL QE RLLG VMV +HI
Sbjct: 62 ITDGRVLVGFFNCTDRDANIVLSMCAEYLVE----------GQEPRLLGNVMVAKKHI 109
>gi|195398353|ref|XP_002057786.1| GJ18323 [Drosophila virilis]
gi|194141440|gb|EDW57859.1| GJ18323 [Drosophila virilis]
Length = 117
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 36/58 (62%), Gaps = 10/58 (17%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+TDGRVLVG F CTDRDAN++L C EYL QE RLLG VMV +HI
Sbjct: 56 ITDGRVLVGFFNCTDRDANIVLSMCAEYLVE----------GQEPRLLGNVMVAKKHI 103
>gi|195116465|ref|XP_002002775.1| GI11171 [Drosophila mojavensis]
gi|193913350|gb|EDW12217.1| GI11171 [Drosophila mojavensis]
Length = 112
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 36/58 (62%), Gaps = 10/58 (17%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+TDGRVLVG F CTDRDAN++L C EYL QE RLLG VMV +HI
Sbjct: 51 ITDGRVLVGFFNCTDRDANIVLSMCAEYLVE----------GQEPRLLGNVMVAKKHI 98
>gi|451853777|gb|EMD67070.1| hypothetical protein COCSADRAFT_82226 [Cochliobolus sativus
ND90Pr]
Length = 107
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 9/67 (13%)
Query: 2 TDGRVLVGTFLCTDRDANVILGSCGEYLSPE---VFESKEENGAQEA------RLLGLVM 52
+DGRV G CTD+D N+IL EY +P + ++ EE+G Q A R +GL++
Sbjct: 23 SDGRVFGGQMKCTDKDRNIILALAHEYRAPSAEAIRKAVEESGNQSASVAWNSRFVGLIV 82
Query: 53 VPGQHIP 59
VPGQHI
Sbjct: 83 VPGQHIK 89
>gi|451999694|gb|EMD92156.1| hypothetical protein COCHEDRAFT_12920 [Cochliobolus
heterostrophus C5]
Length = 107
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 9/66 (13%)
Query: 2 TDGRVLVGTFLCTDRDANVILGSCGEYLSPE---VFESKEENGAQEA------RLLGLVM 52
+DGRV G CTD+D N+IL EY +P + ++ EE+G Q A R +GL++
Sbjct: 23 SDGRVFGGQMKCTDKDRNIILALAHEYRAPSAEAIRKAVEESGNQSASVAWNSRFVGLIV 82
Query: 53 VPGQHI 58
VPGQHI
Sbjct: 83 VPGQHI 88
>gi|358341144|dbj|GAA48892.1| small nuclear ribonucleoprotein B and B' [Clonorchis sinensis]
Length = 178
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 37/58 (63%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
M DGR LVGTF DR N++L C E+ +V SK+E QE R LGLV++ G+H+
Sbjct: 1 MQDGRQLVGTFKAFDRHMNLVLCDCDEFRHVKVKGSKQEKEKQEKRALGLVLLRGEHV 58
>gi|312372861|gb|EFR20732.1| hypothetical protein AND_19609 [Anopheles darlingi]
Length = 487
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 38/58 (65%), Gaps = 10/58 (17%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
MTDGR+L+G F+CTD DANV+L EY E G +E R LGLVM+PG++I
Sbjct: 424 MTDGRILMGFFVCTDADANVVLQLASEY---------TEIGGEE-RYLGLVMIPGRYI 471
>gi|347971925|ref|XP_003436817.1| AGAP013238-PA [Anopheles gambiae str. PEST]
gi|333469092|gb|EGK97175.1| AGAP013238-PA [Anopheles gambiae str. PEST]
Length = 77
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 39/58 (67%), Gaps = 10/58 (17%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
MTDGR+L G F+CTD DANV+L + E+ E G +E R+LGLVM+PG++I
Sbjct: 18 MTDGRILSGYFVCTDADANVVLQATSEF---------TEIGGEE-RVLGLVMIPGRYI 65
>gi|240279161|gb|EER42666.1| conserved hypothetical protein [Ajellomyces capsulatus H143]
Length = 129
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 14/71 (19%)
Query: 2 TDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQE--------------ARL 47
TD R+ VGTF CTD D N+IL + EY P + E + N +E +R
Sbjct: 23 TDARLFVGTFKCTDNDRNIILSTTHEYRYPTIPEHEPANPTREDDYTATGVVKADMTSRY 82
Query: 48 LGLVMVPGQHI 58
+GLV+VPG +I
Sbjct: 83 IGLVVVPGHYI 93
>gi|225555023|gb|EEH03316.1| LSM domain-containing protein [Ajellomyces capsulatus G186AR]
Length = 129
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 14/71 (19%)
Query: 2 TDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQE--------------ARL 47
TD R+ VGTF CTD D N+IL + EY P + E + N +E +R
Sbjct: 23 TDARLFVGTFKCTDNDRNIILSTTHEYRYPTIPEHEPANPTREDDYTATGVVKADMASRY 82
Query: 48 LGLVMVPGQHI 58
+GLV+VPG +I
Sbjct: 83 IGLVVVPGHYI 93
>gi|226468892|emb|CAX76474.1| Small nuclear ribonucleoprotein-associated protein B [Schistosoma
japonicum]
Length = 231
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 26/58 (44%), Positives = 36/58 (62%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
M DGR LVGTF DR N+IL C E+ + +K++ QE R LGLV++ G+H+
Sbjct: 21 MQDGRQLVGTFKAFDRHMNIILCDCDEFRQVKSKTAKQDKDRQEKRSLGLVLLRGEHV 78
>gi|189206872|ref|XP_001939770.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187975863|gb|EDU42489.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 107
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 9/66 (13%)
Query: 2 TDGRVLVGTFLCTDRDANVILGSCGEYLSPE---VFESKEENG------AQEARLLGLVM 52
+DGRV G CTD+D N+IL EY +P + ++ EE+G A +R +GL++
Sbjct: 23 SDGRVFGGQMKCTDKDRNIILALAHEYRAPSAETIRKAVEESGNPSAPVAWNSRYVGLIV 82
Query: 53 VPGQHI 58
VPGQHI
Sbjct: 83 VPGQHI 88
>gi|56759110|gb|AAW27695.1| SJCHGC06652 protein [Schistosoma japonicum]
gi|226468894|emb|CAX76475.1| Small nuclear ribonucleoprotein-associated protein B [Schistosoma
japonicum]
gi|226468896|emb|CAX76476.1| Small nuclear ribonucleoprotein-associated protein B [Schistosoma
japonicum]
gi|226468898|emb|CAX76477.1| Small nuclear ribonucleoprotein-associated protein B [Schistosoma
japonicum]
gi|226468900|emb|CAX76478.1| Small nuclear ribonucleoprotein-associated protein B [Schistosoma
japonicum]
gi|226468904|emb|CAX76480.1| Small nuclear ribonucleoprotein-associated protein B [Schistosoma
japonicum]
gi|226468906|emb|CAX76481.1| Small nuclear ribonucleoprotein-associated protein B [Schistosoma
japonicum]
gi|226472872|emb|CAX71122.1| Small nuclear ribonucleoprotein-associated protein B [Schistosoma
japonicum]
Length = 198
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/58 (44%), Positives = 36/58 (62%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
M DGR LVGTF DR N+IL C E+ + +K++ QE R LGLV++ G+H+
Sbjct: 21 MQDGRQLVGTFKAFDRHMNIILCDCDEFRQVKSKTAKQDKDRQEKRALGLVLLRGEHV 78
>gi|396492012|ref|XP_003843692.1| similar to LSM domain-containing protein 1 [Leptosphaeria
maculans JN3]
gi|312220272|emb|CBY00213.1| similar to LSM domain-containing protein 1 [Leptosphaeria
maculans JN3]
Length = 107
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 9/66 (13%)
Query: 2 TDGRVLVGTFLCTDRDANVILGSCGEYLSPE---VFESKEENGAQEA------RLLGLVM 52
+DGRV G CTD+D N+IL EY +P + ++ EE+G A R +GL++
Sbjct: 23 SDGRVFAGQMKCTDKDRNIILALAHEYRAPSADVIRKTVEESGESAAQVPWNPRYVGLIV 82
Query: 53 VPGQHI 58
VPG HI
Sbjct: 83 VPGHHI 88
>gi|358390982|gb|EHK40387.1| hypothetical protein TRIATDRAFT_42071 [Trichoderma atroviride IMI
206040]
Length = 102
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 39/70 (55%), Gaps = 17/70 (24%)
Query: 2 TDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQE-------------ARLL 48
TDGR+ GTF CTD D N++LG+ EY P SKEE A +R L
Sbjct: 23 TDGRMFRGTFKCTDPDMNLVLGNTHEYRQP----SKEEASAAAANTSGDSVSLDMTSRYL 78
Query: 49 GLVMVPGQHI 58
GL++VPGQ+I
Sbjct: 79 GLIVVPGQYI 88
>gi|226468890|emb|CAX76473.1| Small nuclear ribonucleoprotein-associated protein B [Schistosoma
japonicum]
gi|226468902|emb|CAX76479.1| Small nuclear ribonucleoprotein-associated protein B [Schistosoma
japonicum]
Length = 198
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/58 (44%), Positives = 36/58 (62%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
M DGR LVGTF DR N+IL C E+ + +K++ QE R LGLV++ G+H+
Sbjct: 21 MQDGRQLVGTFKAFDRHMNIILCDCDEFRQVKSKTAKQDKDRQEKRSLGLVLLRGEHV 78
>gi|256075617|ref|XP_002574114.1| small nuclear ribonucleoprotein-associated protein [Schistosoma
mansoni]
gi|353233403|emb|CCD80758.1| putative small nuclear ribonucleoprotein-associated protein
[Schistosoma mansoni]
Length = 199
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/58 (44%), Positives = 36/58 (62%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
M DGR LVGTF DR N+IL C E+ + +K++ QE R LGLV++ G+H+
Sbjct: 21 MQDGRQLVGTFKAFDRHMNIILCDCDEFRQVKNKAAKQDKDRQEKRALGLVLLRGEHV 78
>gi|340373526|ref|XP_003385292.1| PREDICTED: LSM domain-containing protein 1-like [Amphimedon
queenslandica]
Length = 114
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPE-VFESKEENGAQ--EARLLGLVMVPGQH 57
+ DGRV+ G F+CTD NV+L +C E+L+ E V ++K + ++ R LGL +VPG
Sbjct: 19 IKDGRVIDGHFMCTDNSCNVVLSNCEEFLTQEDVVKAKNRDTSEAVNIRTLGLAIVPGDQ 78
Query: 58 I 58
I
Sbjct: 79 I 79
>gi|156350483|ref|XP_001622302.1| predicted protein [Nematostella vectensis]
gi|156208807|gb|EDO30202.1| predicted protein [Nematostella vectensis]
Length = 243
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGRV +GTFL D+ NVILG C E+ + SK + +E R+LGLV++ G+H+
Sbjct: 22 LQDGRVFIGTFLAFDKHMNVILGDCDEFRKIKGKSSKAQE-REEKRVLGLVLLRGEHL 78
>gi|310790036|gb|EFQ25569.1| LSM domain-containing protein [Glomerella graminicola M1.001]
Length = 113
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 36/70 (51%), Gaps = 15/70 (21%)
Query: 2 TDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEA-------------RLL 48
TDGR+ +G F CTD D NV+L EY P + AQ+A R L
Sbjct: 23 TDGRMFLGQFKCTDPDRNVVLAHTYEYRQPSA--QRRAEAAQKAAERTGTVSMDMTSRYL 80
Query: 49 GLVMVPGQHI 58
GLV+VPGQ+I
Sbjct: 81 GLVVVPGQYI 90
>gi|346973851|gb|EGY17303.1| LSM domain-containing protein [Verticillium dahliae VdLs.17]
Length = 116
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 36/68 (52%), Gaps = 11/68 (16%)
Query: 2 TDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQE-----------ARLLGL 50
TDGR+ +G F CTD D NV+L EY P V + + A +R LGL
Sbjct: 25 TDGRMFLGQFKCTDPDQNVVLAHTYEYRQPTVQQQGDAARAAGANAESVKMDMTSRYLGL 84
Query: 51 VMVPGQHI 58
V+VPG+HI
Sbjct: 85 VVVPGEHI 92
>gi|358387658|gb|EHK25252.1| hypothetical protein TRIVIDRAFT_54762 [Trichoderma virens Gv29-8]
Length = 102
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 34/66 (51%), Gaps = 9/66 (13%)
Query: 2 TDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGA---------QEARLLGLVM 52
TDGR+ GTF CTD D N++LG+ EY P E +R LGL++
Sbjct: 23 TDGRMFRGTFKCTDPDRNIVLGNSHEYRQPSEEERSAAAANASGSSTTLDMTSRYLGLIV 82
Query: 53 VPGQHI 58
VPG HI
Sbjct: 83 VPGHHI 88
>gi|327298535|ref|XP_003233961.1| hypothetical protein TERG_05830 [Trichophyton rubrum CBS 118892]
gi|326464139|gb|EGD89592.1| hypothetical protein TERG_05830 [Trichophyton rubrum CBS 118892]
Length = 113
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 36/76 (47%), Gaps = 19/76 (25%)
Query: 2 TDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEA---------------- 45
+D RV VG F CTD D N+IL + EY P E+ A+E
Sbjct: 23 SDSRVFVGLFKCTDNDRNMILSTTHEYRCPTESAPAEQASAEETEGPKTPCNEPLDFNTD 82
Query: 46 ---RLLGLVMVPGQHI 58
R +GLV++PGQHI
Sbjct: 83 MTRRFIGLVVIPGQHI 98
>gi|322694709|gb|EFY86531.1| LSM domain-containing protein [Metarhizium acridum CQMa 102]
Length = 102
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 5/62 (8%)
Query: 2 TDGRVLVGTFLCTDRDANVILGSCGEYLS---PEVFESKEENGAQE--ARLLGLVMVPGQ 56
TDGR+ G F CTD D N++L + EY P + E + + ++ +R LGLV+VPG
Sbjct: 23 TDGRLFWGAFKCTDPDKNIVLANTYEYRQPSRPRLVEGPDGSTTEDRTSRYLGLVVVPGH 82
Query: 57 HI 58
HI
Sbjct: 83 HI 84
>gi|340517285|gb|EGR47530.1| predicted protein [Trichoderma reesei QM6a]
Length = 101
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 35/68 (51%), Gaps = 13/68 (19%)
Query: 2 TDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEA-----------RLLGL 50
TDGR+ G+F CTD D N++L + EY P E + A A R LGL
Sbjct: 23 TDGRMFRGSFKCTDPDRNIVLANTHEYRQPS--EGERSAAAANASGDSVTLDMTSRYLGL 80
Query: 51 VMVPGQHI 58
V+VPG HI
Sbjct: 81 VVVPGHHI 88
>gi|453089259|gb|EMF17299.1| hypothetical protein SEPMUDRAFT_113298 [Mycosphaerella populorum
SO2202]
Length = 103
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 13/69 (18%)
Query: 3 DGRVLVGTFLCTDRDANVILGSCGEYLSPEVF------ESKEENGAQ-------EARLLG 49
DGR+ VG CTDR+ N+IL EY P + E+ GA + R +G
Sbjct: 26 DGRMFVGQLKCTDRERNLILAMTHEYRQPSHLDIQRAAQRHEQTGASGNFHLDMKKRFVG 85
Query: 50 LVMVPGQHI 58
LV++PGQHI
Sbjct: 86 LVVLPGQHI 94
>gi|169615595|ref|XP_001801213.1| hypothetical protein SNOG_10956 [Phaeosphaeria nodorum SN15]
gi|111060335|gb|EAT81455.1| hypothetical protein SNOG_10956 [Phaeosphaeria nodorum SN15]
Length = 128
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 9/66 (13%)
Query: 2 TDGRVLVGTFLCTDRDANVILGSCGEYLSP--EVFESKEENGAQ-------EARLLGLVM 52
+DGRV G CTD+D N+IL EY +P EV ++ +R +GLV+
Sbjct: 44 SDGRVFGGQMKCTDKDQNIILALAHEYRAPSIEVIRKAVQDSGNPSTSVPWNSRYVGLVV 103
Query: 53 VPGQHI 58
VPGQHI
Sbjct: 104 VPGQHI 109
>gi|119178424|ref|XP_001240885.1| hypothetical protein CIMG_08048 [Coccidioides immitis RS]
gi|303310373|ref|XP_003065199.1| LSM domain containing protein [Coccidioides posadasii C735 delta
SOWgp]
gi|240104859|gb|EER23054.1| LSM domain containing protein [Coccidioides posadasii C735 delta
SOWgp]
gi|320033893|gb|EFW15839.1| hypothetical protein CPSG_07466 [Coccidioides posadasii str.
Silveira]
gi|392867156|gb|EAS29642.2| LSM domain-containing protein [Coccidioides immitis RS]
Length = 101
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 12/69 (17%)
Query: 2 TDGRVLVGTFLCTDRDANVILGSCGEYLSPE---VFESKEENGAQE---------ARLLG 49
+D R+ VG F CTD D N+IL + EY P + E+ + G++ +R +G
Sbjct: 23 SDTRLFVGLFKCTDNDRNIILSNTYEYRFPTPVALNEAIAQQGSENQEVVKANMTSRFIG 82
Query: 50 LVMVPGQHI 58
LV+VPGQHI
Sbjct: 83 LVVVPGQHI 91
>gi|154273170|ref|XP_001537437.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150415949|gb|EDN11293.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 115
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 15/72 (20%)
Query: 2 TDGRVLVGTFLCTD-RDANVILGSCGEYLSPEVFESKEENGAQE--------------AR 46
TD R+ VGTF CTD +D N+IL + EY P + E + N +E +R
Sbjct: 23 TDARLFVGTFKCTDNQDRNIILSTTHEYRYPAIPEHEPANLTREDDYTATGIVKADMISR 82
Query: 47 LLGLVMVPGQHI 58
+GLV+VPG +I
Sbjct: 83 YIGLVVVPGHYI 94
>gi|326482850|gb|EGE06860.1| hypothetical protein TEQG_08743 [Trichophyton equinum CBS 127.97]
Length = 113
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 38/76 (50%), Gaps = 19/76 (25%)
Query: 2 TDGRVLVGTFLCTDRDANVILGSCGEYLSP------EVFESKEENGAQEA---------- 45
+D RV VG F CTD D N+IL + EY P E S+E G + A
Sbjct: 23 SDSRVFVGLFKCTDNDRNMILSTTHEYRCPTERAPAEQASSEEMEGPKAACNAPLDLNTD 82
Query: 46 ---RLLGLVMVPGQHI 58
R +GLV++PGQHI
Sbjct: 83 MSRRFIGLVVIPGQHI 98
>gi|380472105|emb|CCF46947.1| LSM domain-containing protein [Colletotrichum higginsianum]
Length = 113
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 11/69 (15%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKE-----ENGA------QEARLLG 49
+TDGR+ +G F CTD D NV+L EY P + E +G+ +R LG
Sbjct: 22 VTDGRMFLGQFKCTDPDRNVVLAHAYEYRQPSAQQRAELSRQTTDGSGTVTIDMTSRYLG 81
Query: 50 LVMVPGQHI 58
LV+VPGQ+I
Sbjct: 82 LVVVPGQYI 90
>gi|291239259|ref|XP_002739539.1| PREDICTED: small nuclear ribonucleoprotein polypeptide N-like
[Saccoglossus kowalevskii]
Length = 228
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTFL D+ N+ILG C E+ + +K+ +E R+LGLV++ G+H+
Sbjct: 21 IQDGRIFIGTFLAFDKHMNLILGDCEEFRKIKPKNTKQPE-REEKRVLGLVLLRGEHL 77
>gi|170584389|ref|XP_001896983.1| small nuclear ribonucleoprotein [Brugia malayi]
gi|158595622|gb|EDP34162.1| small nuclear ribonucleoprotein, putative [Brugia malayi]
Length = 81
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 10/58 (17%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+TDGR++ G F+CTD N+IL C E E+ E+R++GLVM G+HI
Sbjct: 21 LTDGRIIEGKFVCTDNAPNIILSGCKEQWKDEL----------ESRMVGLVMANGKHI 68
>gi|261187907|ref|XP_002620371.1| conserved hypothetical protein [Ajellomyces dermatitidis
SLH14081]
gi|239593488|gb|EEQ76069.1| conserved hypothetical protein [Ajellomyces dermatitidis
SLH14081]
gi|239608467|gb|EEQ85454.1| conserved hypothetical protein [Ajellomyces dermatitidis ER-3]
gi|327356079|gb|EGE84936.1| LSM domain-containing protein [Ajellomyces dermatitidis ATCC
18188]
Length = 117
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 16/72 (22%)
Query: 3 DGRVLVGTFLCTDRDANVILGSCGEYLSPEV---FESKEENGAQE-------------AR 46
D R+ VGTF CTD D N+IL + EY P + E++ + A++ +R
Sbjct: 24 DTRLFVGTFKCTDNDRNIILSATHEYRYPSISPDIETEPADVARDDPAATGIVKADMTSR 83
Query: 47 LLGLVMVPGQHI 58
+GLV+VPGQ+I
Sbjct: 84 YIGLVVVPGQYI 95
>gi|67526669|ref|XP_661396.1| hypothetical protein AN3792.2 [Aspergillus nidulans FGSC A4]
gi|40740810|gb|EAA60000.1| hypothetical protein AN3792.2 [Aspergillus nidulans FGSC A4]
gi|259481653|tpe|CBF75374.1| TPA: conserved hypothetical protein [Aspergillus nidulans FGSC
A4]
Length = 113
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 15/72 (20%)
Query: 2 TDGRVLVGTFLCTDRDANVILGSCGEYLSPEVF---------------ESKEENGAQEAR 46
TD R+ VG F CTD N+IL + EY P ES++ +R
Sbjct: 23 TDTRIFVGVFKCTDAARNIILANTHEYRYPTTAAVQDAALNTTPETPKESQKLKLNMTSR 82
Query: 47 LLGLVMVPGQHI 58
+GLV+VPGQHI
Sbjct: 83 FIGLVVVPGQHI 94
>gi|198467452|ref|XP_002134543.1| GA22306 [Drosophila pseudoobscura pseudoobscura]
gi|198149252|gb|EDY73170.1| GA22306 [Drosophila pseudoobscura pseudoobscura]
Length = 94
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 36/58 (62%), Gaps = 10/58 (17%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
++DGRVL+GTFL TD D N++LG+C EY ENG + LG V VP +HI
Sbjct: 38 ISDGRVLMGTFLQTDVDVNIVLGNCSEY--------PLENGL--PKFLGTVKVPCEHI 85
>gi|72169980|ref|XP_786252.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Strongylocentrotus purpuratus]
Length = 204
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR +GTFL D+ N++LG C E+ +S + +E R+LGLV++ G+H+
Sbjct: 21 LQDGRTFIGTFLAFDKHMNIVLGDCEEFRKLRA-KSAKAPAKEEKRVLGLVLLRGEHL 77
>gi|46108038|ref|XP_381077.1| hypothetical protein FG00901.1 [Gibberella zeae PH-1]
Length = 106
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 9/66 (13%)
Query: 2 TDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFES----KEENGAQ-----EARLLGLVM 52
+DGR+ G+ CTD D N++L EY P E +E +GA +R LGLV+
Sbjct: 23 SDGRLFWGSLKCTDPDRNIVLSHTYEYRQPSSREREKAVEEADGASVKVDMTSRYLGLVV 82
Query: 53 VPGQHI 58
+PG HI
Sbjct: 83 IPGHHI 88
>gi|408388532|gb|EKJ68216.1| hypothetical protein FPSE_11683 [Fusarium pseudograminearum
CS3096]
Length = 106
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 9/66 (13%)
Query: 2 TDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFES----KEENGAQ-----EARLLGLVM 52
+DGR+ G+ CTD D N++L EY P E +E +GA +R LGLV+
Sbjct: 23 SDGRLFWGSLKCTDPDRNIVLSHTYEYRQPSSRERAKAVEEADGASVKVDMTSRYLGLVV 82
Query: 53 VPGQHI 58
+PG HI
Sbjct: 83 IPGHHI 88
>gi|342878277|gb|EGU79632.1| hypothetical protein FOXB_09915 [Fusarium oxysporum Fo5176]
Length = 106
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 13/68 (19%)
Query: 2 TDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEA-----------RLLGL 50
+DGR+ G CTD D N++L EY P E E A++A R LGL
Sbjct: 23 SDGRLFWGALKCTDPDKNIVLAHTYEYRQPSSRE--REKAAEKADGETVKVDMTSRYLGL 80
Query: 51 VMVPGQHI 58
V++PG+HI
Sbjct: 81 VVIPGEHI 88
>gi|320585962|gb|EFW98641.1| lsm domain containing protein [Grosmannia clavigera kw1407]
Length = 125
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 13/70 (18%)
Query: 2 TDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQE-------------ARLL 48
TDGR+ G F CTD D N++L EY P + E+ E +R L
Sbjct: 42 TDGRMFRGQFKCTDPDYNIVLAHTDEYRQPTARQIAEQARQAELAGNTGKVAVNMVSRYL 101
Query: 49 GLVMVPGQHI 58
GLV+VPG H+
Sbjct: 102 GLVVVPGNHV 111
>gi|402590545|gb|EJW84475.1| hypothetical protein WUBG_04613 [Wuchereria bancrofti]
Length = 81
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 10/58 (17%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+TDGR + G F+CTD N+IL C E E+ E+R++GLVM G+HI
Sbjct: 21 LTDGRTIEGKFMCTDNAPNIILSGCKEQWKDEL----------ESRMVGLVMANGKHI 68
>gi|440633178|gb|ELR03097.1| hypothetical protein GMDG_05936 [Geomyces destructans 20631-21]
Length = 125
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 2 TDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGA------QEARLLGLVMVPG 55
TD R+ +G F CTD D N+IL EY P + +G +R LGLV+VPG
Sbjct: 25 TDKRMFLGEFKCTDSDRNMILARTYEYRLPSESSLPQTSGTGSVTLEMTSRYLGLVVVPG 84
Query: 56 QHI 58
+HI
Sbjct: 85 EHI 87
>gi|258577265|ref|XP_002542814.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237903080|gb|EEP77481.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 99
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 12/69 (17%)
Query: 2 TDGRVLVGTFLCTDRDANVILGSCGEYLSPE---VFESKEENGAQEA---------RLLG 49
+D R+ VG F CTD D N+IL + EY P + E+ + G E+ R +G
Sbjct: 21 SDTRLFVGIFKCTDNDRNIILANTYEYRYPTPAALNEAIRQQGQGESEVVTADMTTRFIG 80
Query: 50 LVMVPGQHI 58
LV+VPG+HI
Sbjct: 81 LVVVPGRHI 89
>gi|312082731|ref|XP_003143565.1| small nuclear ribonucleoprotein [Loa loa]
gi|307761271|gb|EFO20505.1| small nuclear ribonucleoprotein [Loa loa]
Length = 80
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 10/60 (16%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHIPA 60
+TDGR++ G F+CTD N+IL C E E+ E+R++GLVM G+HI +
Sbjct: 20 LTDGRIIEGKFVCTDNAPNIILSGCKEQWKDEL----------ESRVVGLVMANGRHIRS 69
>gi|121710344|ref|XP_001272788.1| LSM domain protein [Aspergillus clavatus NRRL 1]
gi|119400938|gb|EAW11362.1| LSM domain protein [Aspergillus clavatus NRRL 1]
Length = 119
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 38/76 (50%), Gaps = 19/76 (25%)
Query: 2 TDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKE----ENGAQE------------- 44
TD R+ VGTF CTD + N+ILG+ EY P K+ N +E
Sbjct: 23 TDTRMFVGTFKCTDAERNIILGNTYEYRFPSSSAIKDAAAKTNDGEEVVAPPERRNIKLD 82
Query: 45 --ARLLGLVMVPGQHI 58
+R +GLV+VP QHI
Sbjct: 83 MTSRFIGLVVVPSQHI 98
>gi|336463193|gb|EGO51433.1| hypothetical protein NEUTE1DRAFT_88845 [Neurospora tetrasperma FGSC
2508]
gi|350297609|gb|EGZ78586.1| hypothetical protein NEUTE2DRAFT_81307 [Neurospora tetrasperma FGSC
2509]
Length = 133
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 10/68 (14%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSP---EVFESKEENGAQ-------EARLLGL 50
+TDGR+ G F C D ++N+IL S EY P + +ES + + +R LGL
Sbjct: 33 VTDGRMFWGQFKCVDAESNIILHSAYEYRFPTSSQAYESATSSSSAGKVKVDLTSRHLGL 92
Query: 51 VMVPGQHI 58
V++PGQ+I
Sbjct: 93 VVIPGQYI 100
>gi|302415935|ref|XP_003005799.1| LSM domain-containing protein [Verticillium albo-atrum VaMs.102]
gi|261355215|gb|EEY17643.1| LSM domain-containing protein [Verticillium albo-atrum VaMs.102]
Length = 120
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 13/69 (18%)
Query: 2 TDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQE------------ARLLG 49
TDGR+ +G F CTD D NV+L EY P F+ + + +R LG
Sbjct: 25 TDGRMFLGQFKCTDPDQNVVLAHTYEYRRP-TFQQQGDAARAAGANAESVKMDMTSRYLG 83
Query: 50 LVMVPGQHI 58
LV+VPG+HI
Sbjct: 84 LVVVPGEHI 92
>gi|358368859|dbj|GAA85475.1| LSM domain protein [Aspergillus kawachii IFO 4308]
Length = 117
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 18/75 (24%)
Query: 2 TDGRVLVGTFLCTDRDANVILGSCGEYLSP------------------EVFESKEENGAQ 43
TD R+ VGTF CTD N+IL S EY P +++
Sbjct: 23 TDTRIFVGTFKCTDAARNIILASTYEYRFPSPSTVRDAATGTHDSAAGSAVDAQSVKMDM 82
Query: 44 EARLLGLVMVPGQHI 58
+R +GLV+VPGQHI
Sbjct: 83 TSRFIGLVVVPGQHI 97
>gi|315041709|ref|XP_003170231.1| hypothetical protein MGYG_09154 [Arthroderma gypseum CBS 118893]
gi|311345265|gb|EFR04468.1| hypothetical protein MGYG_09154 [Arthroderma gypseum CBS 118893]
Length = 113
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 38/76 (50%), Gaps = 19/76 (25%)
Query: 2 TDGRVLVGTFLCTDRDANVILGSCGEYLSP------EVFESKEENGAQEA---------- 45
+D RV VG F CTD + N+IL + EY P E S+E G + A
Sbjct: 23 SDSRVFVGLFKCTDNERNMILSTTHEYRCPTEPALAEQVSSEETEGPKGASNEPLDLTAD 82
Query: 46 ---RLLGLVMVPGQHI 58
R +GLV++PGQHI
Sbjct: 83 MSRRFIGLVVIPGQHI 98
>gi|317029590|ref|XP_001391936.2| LSM domain protein [Aspergillus niger CBS 513.88]
gi|350635888|gb|EHA24249.1| hypothetical protein ASPNIDRAFT_209414 [Aspergillus niger ATCC
1015]
Length = 117
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 18/75 (24%)
Query: 2 TDGRVLVGTFLCTDRDANVILGSCGEYLSP------------------EVFESKEENGAQ 43
TD R+ VGTF CTD N+IL S EY P +++
Sbjct: 23 TDTRIFVGTFKCTDAARNIILASTYEYRFPSPSTVRDAATGTHDSAAGSAVDAQSIKVDM 82
Query: 44 EARLLGLVMVPGQHI 58
+R +GLV+VPGQHI
Sbjct: 83 TSRFIGLVVVPGQHI 97
>gi|406864116|gb|EKD17162.1| LSM domain-containing protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 191
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 2 TDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQE--ARLLGLVMVPGQHI 58
TD R+ +G F CTD D N+IL EY P + + + +R LGLV+VPG+HI
Sbjct: 109 TDTRMFLGHFKCTDSDRNIILAQTHEYRLPPPPKDIQPGQVMDMTSRYLGLVVVPGEHI 167
>gi|295662236|ref|XP_002791672.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226279798|gb|EEH35364.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 126
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 38/82 (46%), Gaps = 25/82 (30%)
Query: 2 TDGRVLVGTFLCTDRDANVILGSCGEYLSPE-----------VFESKEENGAQE------ 44
TD R+ VGTF CTD D N+IL + EY P + K N +E
Sbjct: 23 TDTRLFVGTFKCTDNDRNIILSTTHEYRYPSSVPCVVSRNATTTDDKPANSIKEGEIPTT 82
Query: 45 --------ARLLGLVMVPGQHI 58
+R +GLV+VPGQ+I
Sbjct: 83 GVVKADMTSRYIGLVVVPGQYI 104
>gi|169767932|ref|XP_001818437.1| LSM domain protein [Aspergillus oryzae RIB40]
gi|238484861|ref|XP_002373669.1| conserved hypothetical protein [Aspergillus flavus NRRL3357]
gi|83766292|dbj|BAE56435.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220701719|gb|EED58057.1| conserved hypothetical protein [Aspergillus flavus NRRL3357]
gi|391870559|gb|EIT79739.1| LSM domain protein [Aspergillus oryzae 3.042]
Length = 118
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 37/75 (49%), Gaps = 18/75 (24%)
Query: 2 TDGRVLVGTFLCTDRDANVILGSCGEYLSPE---VFESKEENGAQE-------------- 44
TD R+ VG F CTD N+IL S EY P V ++ + Q+
Sbjct: 23 TDTRIFVGAFKCTDSARNIILASTYEYRFPSPSTVRDAATDAENQDPAIGAASQSVKVNM 82
Query: 45 -ARLLGLVMVPGQHI 58
+R +GLV+VPGQHI
Sbjct: 83 TSRFIGLVVVPGQHI 97
>gi|405957470|gb|EKC23678.1| Small nuclear ribonucleoprotein-associated protein B'
[Crassostrea gigas]
Length = 175
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR +GTF D+ N+ILG C E+ + SK+ +E R+LGLV++ G+H+
Sbjct: 21 LQDGRTFIGTFKAFDKHMNLILGDCDEFRKIKPKSSKQGE-REEKRVLGLVLLRGEHL 77
>gi|398403881|ref|XP_003853407.1| hypothetical protein MYCGRDRAFT_80455 [Zymoseptoria tritici
IPO323]
gi|339473289|gb|EGP88383.1| hypothetical protein MYCGRDRAFT_80455 [Zymoseptoria tritici
IPO323]
Length = 99
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 13/70 (18%)
Query: 2 TDGRVLVGTFLCTDRDANVILGSCGEYLSPE------VFESKEENGA-------QEARLL 48
+DGR+ VG CTD + N+IL EY P E E +GA + R +
Sbjct: 24 SDGRMFVGQMKCTDNERNIILAMTHEYRQPSESDIKLAAERHERSGAPGNVKVDMKKRYV 83
Query: 49 GLVMVPGQHI 58
GLV+VPGQ+I
Sbjct: 84 GLVVVPGQYI 93
>gi|255943399|ref|XP_002562468.1| Pc18g06410 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211587201|emb|CAP94865.1| Pc18g06410 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 366
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 38/75 (50%), Gaps = 18/75 (24%)
Query: 2 TDGRVLVGTFLCTDRDANVILGSCGEYLSPEVF---------ESKEENGAQEA------- 45
TD R+ VG F CTD D N+IL + EY P ES EE ++
Sbjct: 23 TDTRMFVGLFKCTDADRNIILANSFEYRMPTTSAVQAAAHEKESWEEGSEAKSATVKVNM 82
Query: 46 --RLLGLVMVPGQHI 58
RL+GL+++PG+HI
Sbjct: 83 THRLIGLIVIPGRHI 97
>gi|405960791|gb|EKC26669.1| Small nuclear ribonucleoprotein-associated protein B'
[Crassostrea gigas]
Length = 145
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR +GTF D+ N+ILG C E+ + SK+ +E R+LGLV++ G+H+
Sbjct: 21 LQDGRTFIGTFKAFDKHMNLILGDCDEFRKIKPKSSKQGE-REEKRVLGLVLLRGEHL 77
>gi|212537761|ref|XP_002149036.1| conserved hypothetical protein [Talaromyces marneffei ATCC 18224]
gi|210068778|gb|EEA22869.1| conserved hypothetical protein [Talaromyces marneffei ATCC 18224]
Length = 116
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 36/72 (50%), Gaps = 15/72 (20%)
Query: 2 TDGRVLVGTFLCTDRDANVILGSCGEYLSPEVF---------ESKEENGA------QEAR 46
TD R+ VG F CTD D N+IL + EY P S +GA +R
Sbjct: 23 TDTRMFVGIFKCTDMDQNIILANTFEYRLPSQSAVQAAAAETTSTSADGAGKFKMDMTSR 82
Query: 47 LLGLVMVPGQHI 58
+GLV+VPGQ+I
Sbjct: 83 FIGLVVVPGQYI 94
>gi|195164447|ref|XP_002023059.1| GL16608 [Drosophila persimilis]
gi|194105121|gb|EDW27164.1| GL16608 [Drosophila persimilis]
Length = 94
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 34/58 (58%), Gaps = 10/58 (17%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
++DGRVL+GTFL TD D N++LG+C EY G + LG V VP +HI
Sbjct: 38 ISDGRVLMGTFLQTDVDVNIVLGNCSEY----------PVGNGLPKFLGTVKVPCEHI 85
>gi|393247449|gb|EJD54956.1| hypothetical protein AURDEDRAFT_25718, partial [Auricularia
delicata TFB-10046 SS5]
Length = 85
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYL------SPEVFESKEENGAQEARLLGLVMVP 54
+ DGRV +G F C D+D N++L + E+ + F +G + R +G+VM+P
Sbjct: 16 IADGRVFLGMFACIDKDRNIVLVNTEEFRVSGPQQQQDTFSRSASSGIEGGRYVGMVMIP 75
Query: 55 GQHI 58
+H+
Sbjct: 76 WKHV 79
>gi|167520394|ref|XP_001744536.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776867|gb|EDQ90485.1| predicted protein [Monosiga brevicollis MX1]
Length = 73
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 4/56 (7%)
Query: 3 DGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
DGR L+GTF+ D+ N+IL C E+ P+ K + +E R LGL+++ G+++
Sbjct: 13 DGRYLIGTFMAYDKHMNIILADCEEHRKPK----KGADEKEEKRTLGLILLRGENV 64
>gi|378725896|gb|EHY52355.1| hypothetical protein HMPREF1120_00569 [Exophiala dermatitidis
NIH/UT8656]
Length = 115
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 15/71 (21%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQE-------------ARL 47
++DGR+ G F CTD D+N+IL + EY P +S E+ E +R
Sbjct: 22 VSDGRLFTGRFQCTDSDSNIILSNAFEYRVPS--KSTEKAAIDEVKATGRPIKADMTSRF 79
Query: 48 LGLVMVPGQHI 58
+GL+++PG+ I
Sbjct: 80 VGLIVIPGKQI 90
>gi|297794953|ref|XP_002865361.1| hypothetical protein ARALYDRAFT_494537 [Arabidopsis lyrata subsp.
lyrata]
gi|297311196|gb|EFH41620.1| hypothetical protein ARALYDRAFT_494537 [Arabidopsis lyrata subsp.
lyrata]
Length = 256
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEY--LSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR L+G F+ DR N++LG C E+ L P K + +E R LGLV++ G+ +
Sbjct: 21 IQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGSKKTKEDREERRTLGLVLLRGEEV 80
>gi|452987629|gb|EME87384.1| hypothetical protein MYCFIDRAFT_29086 [Pseudocercospora fijiensis
CIRAD86]
Length = 109
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 13/70 (18%)
Query: 2 TDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESK------EENGA-------QEARLL 48
+DGR+ VG CTD ++N+IL EY P + K E++G + R +
Sbjct: 25 SDGRMFVGQMKCTDNESNIILAMTYEYREPSEADIKRATQRHEQSGQVGNVKVDMKKRFV 84
Query: 49 GLVMVPGQHI 58
GLV+VPGQ+I
Sbjct: 85 GLVVVPGQYI 94
>gi|402083875|gb|EJT78893.1| hypothetical protein GGTG_03986 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 126
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 12/69 (17%)
Query: 2 TDGRVLVGTFLCTDRDANVILGSCGEYLSPEV------------FESKEENGAQEARLLG 49
TD R+ G F CTD D NV+L EY P + N +R LG
Sbjct: 26 TDTRMFWGQFKCTDPDCNVVLAHAYEYRHPTAEQVAEEARRAAAAQRPAFNLDMNSRFLG 85
Query: 50 LVMVPGQHI 58
L++VPG+HI
Sbjct: 86 LIVVPGEHI 94
>gi|17509627|ref|NP_493348.1| Protein SNR-2 [Caenorhabditis elegans]
gi|29427664|sp|P91918.1|RSMB_CAEEL RecName: Full=Probable small nuclear ribonucleoprotein-associated
protein B; Short=snRNP-B; AltName: Full=Sm protein B;
Short=Sm-B; Short=SmB
gi|3880616|emb|CAB07132.1| Protein SNR-2 [Caenorhabditis elegans]
Length = 160
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR +G F D+ N++L C E+ + K+ +G +E R+LGLV+V G+HI
Sbjct: 21 LQDGRTFIGFFKAFDKHMNILLAECEEHRQIKPKAGKKTDG-EEKRILGLVLVRGEHI 77
>gi|346321713|gb|EGX91312.1| LSM domain protein [Cordyceps militaris CM01]
Length = 110
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 34/72 (47%), Gaps = 20/72 (27%)
Query: 2 TDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEA---------------R 46
TDGR+ G F CTD ++N++L EY P EE AQ A R
Sbjct: 23 TDGRLFWGQFKCTDAESNIVLAQTYEYRPP-----SEEMRAQAATQAMGAASVTLDMTSR 77
Query: 47 LLGLVMVPGQHI 58
LGLV+VPG I
Sbjct: 78 YLGLVVVPGHRI 89
>gi|225682296|gb|EEH20580.1| predicted protein [Paracoccidioides brasiliensis Pb03]
Length = 129
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 39/82 (47%), Gaps = 25/82 (30%)
Query: 2 TDGRVLVGTFLCTDRDANVILGSCGEYLSPE-----VF------ESKEENGAQE------ 44
+D R+ VGTF CTD D N+IL + EY P VF + N +E
Sbjct: 23 SDTRLFVGTFKCTDNDRNIILSTTHEYRYPSSVPCVVFPNATATDDTPANSIEEGETATA 82
Query: 45 --------ARLLGLVMVPGQHI 58
+R +GLV+VPGQ+I
Sbjct: 83 GVVKADMTSRYIGLVVVPGQYI 104
>gi|118398961|ref|XP_001031807.1| Sm protein [Tetrahymena thermophila]
gi|89286141|gb|EAR84144.1| Sm protein [Tetrahymena thermophila SB210]
Length = 159
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+LVGTFL D+ N++L E+ P ++K E Q R+LGLV++ G++I
Sbjct: 19 IQDGRMLVGTFLAFDKHLNLVLSETEEF-RPIKPKTKGEPERQTKRILGLVIIRGENI 75
>gi|425769567|gb|EKV08058.1| hypothetical protein PDIP_70210 [Penicillium digitatum Pd1]
gi|425771204|gb|EKV09654.1| hypothetical protein PDIG_60780 [Penicillium digitatum PHI26]
Length = 102
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 21/76 (27%)
Query: 2 TDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEA---------------- 45
TD R+ VG F CTD D N+IL + EY P +S + A E
Sbjct: 23 TDTRMFVGLFKCTDADRNIILANSFEYRMPT--KSAVQAAADEKQWGEGSETKSTTIKVN 80
Query: 46 ---RLLGLVMVPGQHI 58
RL+GL+++PG+HI
Sbjct: 81 MTHRLIGLIVIPGRHI 96
>gi|225463717|ref|XP_002263359.1| PREDICTED: small nuclear ribonucleoprotein-associated protein B'
[Vitis vinifera]
gi|147774905|emb|CAN61706.1| hypothetical protein VITISV_001610 [Vitis vinifera]
Length = 276
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEY--LSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR LVG F+ DR N++LG C E+ L P + EE +E R LGLV++ G+ +
Sbjct: 21 IQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNEER--EERRTLGLVLLRGEEV 78
>gi|341902435|gb|EGT58370.1| hypothetical protein CAEBREN_14673 [Caenorhabditis brenneri]
Length = 159
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR VG F D+ N++L C E+ + K+ +G +E R+LGLV++ G+HI
Sbjct: 21 LQDGRTFVGFFKAFDKHMNILLAECEEHRQIKPKAGKKADG-EEKRILGLVLLRGEHI 77
>gi|298714462|emb|CBJ27484.1| Small nuclear ribonucleoprotein-associated protein B [Ectocarpus
siliculosus]
Length = 217
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 11/64 (17%)
Query: 3 DGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGA--------QEARLLGLVMVP 54
DGRVLVGT + DR N++LG C EY F+ K+ + A +E R+LGLV++
Sbjct: 23 DGRVLVGTLMAFDRHLNLVLGDCEEY---RRFKPKKGSEAAAGIHEEREEKRVLGLVLLR 79
Query: 55 GQHI 58
G+++
Sbjct: 80 GENV 83
>gi|449298480|gb|EMC94495.1| hypothetical protein BAUCODRAFT_74165 [Baudoinia compniacensis
UAMH 10762]
Length = 105
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 13/71 (18%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSP---------EVFESKEENGA----QEARL 47
+ DGR VG CTD + N+IL EY P + E+ E G + R
Sbjct: 28 IADGRTFVGQLKCTDNECNLILAMTHEYRQPSEAAVKLAADRHEASREEGNVKVDMKKRF 87
Query: 48 LGLVMVPGQHI 58
+GLV+VPGQ+I
Sbjct: 88 VGLVVVPGQYI 98
>gi|242808331|ref|XP_002485140.1| conserved hypothetical protein [Talaromyces stipitatus ATCC
10500]
gi|218715765|gb|EED15187.1| conserved hypothetical protein [Talaromyces stipitatus ATCC
10500]
Length = 116
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 15/72 (20%)
Query: 2 TDGRVLVGTFLCTDRDANVILGSCGEYLSPE-----------VFESKEENGA----QEAR 46
TD R+ VG F CTD D NVIL + EY P + + G +R
Sbjct: 23 TDTRMFVGIFKCTDMDRNVILANTFEYRLPSQTAVQAAAAAETVSTPDATGKFKMDMTSR 82
Query: 47 LLGLVMVPGQHI 58
+GLV+VPGQ+I
Sbjct: 83 FIGLVVVPGQYI 94
>gi|21536707|gb|AAM61039.1| putative snRNP protein [Arabidopsis thaliana]
Length = 254
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEY--LSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR L+G F+ DR N++LG C E+ L P K +E R LGLV++ G+ +
Sbjct: 21 IQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNKKTSEEREERRTLGLVLLRGEEV 80
>gi|15241519|ref|NP_199263.1| small nuclear ribonucleoprotein B and B' [Arabidopsis thaliana]
gi|79329893|ref|NP_001032011.1| small nuclear ribonucleoprotein B and B' [Arabidopsis thaliana]
gi|9758703|dbj|BAB09157.1| unnamed protein product [Arabidopsis thaliana]
gi|14596137|gb|AAK68796.1| Unknown protein [Arabidopsis thaliana]
gi|18377438|gb|AAL66885.1| unknown protein [Arabidopsis thaliana]
gi|51971895|dbj|BAD44612.1| unknown protein [Arabidopsis thaliana]
gi|62320496|dbj|BAD95039.1| hypothetical protein [Arabidopsis thaliana]
gi|332007733|gb|AED95116.1| small nuclear ribonucleoprotein B and B' [Arabidopsis thaliana]
gi|332007734|gb|AED95117.1| small nuclear ribonucleoprotein B and B' [Arabidopsis thaliana]
Length = 254
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEY--LSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR L+G F+ DR N++LG C E+ L P K +E R LGLV++ G+ +
Sbjct: 21 IQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNKKTNEEREERRTLGLVLLRGEEV 80
>gi|268561770|ref|XP_002646524.1| C. briggsae CBR-SNR-2 protein [Caenorhabditis briggsae]
Length = 160
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR VG F D+ N++L C E+ + K+ +G +E R+LGLV++ G+HI
Sbjct: 21 LQDGRTFVGFFKAFDKHMNILLAECEEHRQIKPKAGKKADG-EEKRILGLVLLRGEHI 77
>gi|51970288|dbj|BAD43836.1| unknown protein [Arabidopsis thaliana]
Length = 254
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEY--LSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR L+G F+ DR N++LG C E+ L P K +E R LGLV++ G+ +
Sbjct: 21 IQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNKKTNEEREERRTLGLVLLRGEEV 80
>gi|319411809|emb|CBQ73852.1| conserved hypothetical protein [Sporisorium reilianum SRZ2]
Length = 116
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 9/57 (15%)
Query: 3 DGRVLVGTFLCTDRDANVILGSCGEY-LSPEVFESKEENGAQEARLLGLVMVPGQHI 58
DGR GTF+C D N+IL + E ++PE G +R +G+VM+PG H+
Sbjct: 33 DGRAFCGTFVCVDSGKNIILSNTDETRITPE--------GRTSSRNVGMVMIPGDHV 81
>gi|241562203|ref|XP_002401328.1| flagelliform silk protein, putative [Ixodes scapularis]
gi|215499857|gb|EEC09351.1| flagelliform silk protein, putative [Ixodes scapularis]
Length = 241
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 35/58 (60%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ D R+ +GTF D+ N+ILG C E+ + ++ +E R+LGLV++ G++I
Sbjct: 21 LQDSRIFIGTFKAFDKHMNLILGDCEEFRKVKGKNQAKQGDREEKRVLGLVLLRGENI 78
>gi|356553373|ref|XP_003545031.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Glycine max]
Length = 281
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEY--LSPEVFESKEENGAQE-ARLLGLVMVPGQH 57
+ DGR LVG F+ DR N++LG C E+ L P + E G +E R LGLV++ G+
Sbjct: 21 IQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKPAEGGDREDRRTLGLVLLRGEE 80
Query: 58 I 58
+
Sbjct: 81 V 81
>gi|115390653|ref|XP_001212831.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114193755|gb|EAU35455.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 119
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 19/76 (25%)
Query: 2 TDGRVLVGTFLCTDRDANVILGSCGEYLSP-----------EVFESKEENGA-------- 42
+D R+ VG+F CTD N+ILG EY P + + GA
Sbjct: 23 SDTRIFVGSFKCTDAARNIILGGTYEYRYPTPSAVRDAAADAAKDPESSAGAPPTNVQVN 82
Query: 43 QEARLLGLVMVPGQHI 58
+R +GLV++PGQHI
Sbjct: 83 MTSRFIGLVVIPGQHI 98
>gi|290891746|gb|ADD69960.1| small ribonucleoprotein SmB [Schmidtea mediterranea]
Length = 177
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR LVGTF D+ NVIL C E+ + S+EE +E R LG V++ G+ +
Sbjct: 19 LQDGRQLVGTFKAFDKHMNVILCDCDEFRKVKSKGSREEK--EEKRSLGFVLIRGEQL 74
>gi|62896825|dbj|BAD96353.1| small nuclear ribonucleoprotein polypeptide N variant [Homo
sapiens]
Length = 240
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL CGE+ + +K+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCGEFRKIKPKNAKQPE-REEKRVLGLVLLRGENL 77
>gi|400603047|gb|EJP70645.1| LSM domain-containing protein [Beauveria bassiana ARSEF 2860]
Length = 109
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 34/67 (50%), Gaps = 11/67 (16%)
Query: 2 TDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEA----------RLLGLV 51
TDGR+ G F CTD ++N++L EY P E + + Q A R LGLV
Sbjct: 23 TDGRLFWGQFKCTDAESNIVLAHTYEYRPPSE-ELRAQAMTQAAGGNVTLDMTSRYLGLV 81
Query: 52 MVPGQHI 58
+VPG I
Sbjct: 82 VVPGHRI 88
>gi|296424680|ref|XP_002841875.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295638125|emb|CAZ86066.1| unnamed protein product [Tuber melanosporum]
Length = 119
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 13/70 (18%)
Query: 2 TDGRVLVGTFLCTDRDANVILGSCGEYLSPE-------------VFESKEENGAQEARLL 48
TD RV VG CTD+D N+IL EY P V E + ++R +
Sbjct: 23 TDTRVFVGELKCTDKDKNLILAQTHEYRYPTGNGLRAEVESGEGVVEEGKVKLTLKSRYI 82
Query: 49 GLVMVPGQHI 58
GLV+VPG+ I
Sbjct: 83 GLVVVPGEFI 92
>gi|393247437|gb|EJD54944.1| hypothetical protein AURDEDRAFT_31876, partial [Auricularia
delicata TFB-10046 SS5]
Length = 89
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYL------SPEVFESKEENGAQEARLLGLVMVP 54
+ DGRV +G F C D+ N++L + E+ + F +G + R +G+VM+P
Sbjct: 20 IADGRVFLGMFACIDKARNIVLVNTEEFRVGGTQQQQDTFSRSASSGIEGGRYVGMVMIP 79
Query: 55 GQHI 58
+H+
Sbjct: 80 WKHV 83
>gi|255578055|ref|XP_002529898.1| small nuclear ribonucleoprotein-associated protein, putative
[Ricinus communis]
gi|223530625|gb|EEF32501.1| small nuclear ribonucleoprotein-associated protein, putative
[Ricinus communis]
Length = 275
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQE-ARLLGLVMVPGQHI 58
+ DGR LVG F+ DR N++LG C E+ + K+ N +E R LGLV++ G+ +
Sbjct: 21 IQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNEEREDRRTLGLVLLRGEEV 79
>gi|301104822|ref|XP_002901495.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262100499|gb|EEY58551.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 143
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 18/76 (23%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEV---FESKEENGAQE------------- 44
++DGRV+VG F C D+ NVIL E+ V SK + GA++
Sbjct: 61 ISDGRVIVGRFHCFDKHQNVILKDAREFAPTRVGLGKNSKVKAGARDQEEESRFAGLLLP 120
Query: 45 --ARLLGLVMVPGQHI 58
+R LG+ +VPG+HI
Sbjct: 121 PGSRSLGMTLVPGKHI 136
>gi|145345876|ref|XP_001417425.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577652|gb|ABO95718.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 145
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR LVGTF DR NV+L C E+ + +E+ R+LG V+V G+ +
Sbjct: 21 LVDGRALVGTFTAFDRHVNVVLSDCEEHRKLPPKKGVDEDERHVRRVLGFVLVRGEEV 78
>gi|198419526|ref|XP_002123184.1| PREDICTED: similar to small nuclear ribonucleoprotein
polypeptides B and B1 isoform 1 [Ciona intestinalis]
Length = 167
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGRV +GTF D+ N+IL C E+ V K +E R LGLV++ G+H+
Sbjct: 21 LQDGRVFIGTFKAFDKHMNLILVDCDEFR--RVRPKKGATDREEKRTLGLVLLRGEHL 76
>gi|255578051|ref|XP_002529896.1| small nuclear ribonucleoprotein-associated protein, putative
[Ricinus communis]
gi|223530623|gb|EEF32499.1| small nuclear ribonucleoprotein-associated protein, putative
[Ricinus communis]
Length = 275
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQE-ARLLGLVMVPGQHI 58
+ DGR LVG F+ DR N++LG C E+ + K+ N +E R LGLV++ G+ +
Sbjct: 21 IQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNEEREDRRTLGLVLLRGEEV 79
>gi|357494377|ref|XP_003617477.1| Small nuclear ribonucleoprotein-associated protein B [Medicago
truncatula]
gi|355518812|gb|AET00436.1| Small nuclear ribonucleoprotein-associated protein B [Medicago
truncatula]
Length = 394
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEY--LSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR LVG F+ DR N++LG C E+ L P + + ++ R LGLV++ G+ +
Sbjct: 21 IQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTTDGDREDRRTLGLVLLRGEEV 80
>gi|221113173|ref|XP_002160894.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Hydra magnipapillata]
Length = 179
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 7/62 (11%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGA----QEARLLGLVMVPGQ 56
+ DGR +GTFL D+ N+ILG C E+ + K G +E R LGLV++ G+
Sbjct: 22 LQDGRTFIGTFLAFDKHMNLILGDCDEF---RKIKPKTNKGVEKEKEEKRALGLVLLRGE 78
Query: 57 HI 58
H+
Sbjct: 79 HL 80
>gi|428183707|gb|EKX52564.1| hypothetical protein GUITHDRAFT_48153, partial [Guillardia theta
CCMP2712]
Length = 75
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHIPA 60
+ DGR LVG F+ D+ N++LG C E+ V K E +E R LGLV++ G+ + +
Sbjct: 10 IEDGRQLVGKFMAFDKHMNIVLGDCDEFRRLSVKGGKGEE-REEKRSLGLVILRGESVVS 68
>gi|332639433|pdb|2Y9A|A Chain A, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639440|pdb|2Y9A|H Chain H, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639447|pdb|2Y9A|O Chain O, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639457|pdb|2Y9B|A Chain A, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639464|pdb|2Y9B|H Chain H, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639471|pdb|2Y9B|O Chain O, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639481|pdb|2Y9C|A Chain A, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639488|pdb|2Y9C|H Chain H, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639495|pdb|2Y9C|O Chain O, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639505|pdb|2Y9D|A Chain A, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639512|pdb|2Y9D|H Chain H, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639519|pdb|2Y9D|O Chain O, Structure Of The Spliceosomal U4 Snrnp Core Domain
Length = 95
Score = 44.3 bits (103), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE-REEKRVLGLVLLRGENL 77
>gi|427782609|gb|JAA56756.1| Putative small nuclear ribonucleoprotein-associated protein b and
b' [Rhipicephalus pulchellus]
Length = 239
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ D R+ +GTF D+ N+ILG C E+ + +E R+LGLV++ G++I
Sbjct: 21 LQDSRIFIGTFKAFDKHMNLILGDCEEFRKVKGKSQARHGDREEKRVLGLVLLRGENI 78
>gi|6730226|pdb|1D3B|B Chain B, Crystal Structure Of The D3b Subcomplex Of The Human
Core Snrnp Domain At 2.0a Resolution
gi|6730228|pdb|1D3B|D Chain D, Crystal Structure Of The D3b Subcomplex Of The Human
Core Snrnp Domain At 2.0a Resolution
gi|6730230|pdb|1D3B|F Chain F, Crystal Structure Of The D3b Subcomplex Of The Human
Core Snrnp Domain At 2.0a Resolution
gi|6730232|pdb|1D3B|H Chain H, Crystal Structure Of The D3b Subcomplex Of The Human
Core Snrnp Domain At 2.0a Resolution
gi|6730234|pdb|1D3B|J Chain J, Crystal Structure Of The D3b Subcomplex Of The Human
Core Snrnp Domain At 2.0a Resolution
gi|6730236|pdb|1D3B|L Chain L, Crystal Structure Of The D3b Subcomplex Of The Human
Core Snrnp Domain At 2.0a Resolution
Length = 91
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE-REEKRVLGLVLLRGENL 77
>gi|256082565|ref|XP_002577525.1| solute carrier family 35 member C1 [Schistosoma mansoni]
gi|353232239|emb|CCD79594.1| putative solute carrier family 35 member C1 [Schistosoma mansoni]
Length = 617
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
++DGR +G CTD N+++ SC EY +P +S +N R V++PGQHI
Sbjct: 342 VSDGRRYIGFLCCTDNVGNIVMSSCTEYPAPS--DSAPDN---LLRNFPTVVIPGQHI 394
>gi|224115254|ref|XP_002332199.1| predicted protein [Populus trichocarpa]
gi|222875306|gb|EEF12437.1| predicted protein [Populus trichocarpa]
Length = 289
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQE-ARLLGLVMVPGQHI 58
+ DGR LVG F+ DR N++LG C E+ + K+ N +E R LGLV++ G+ +
Sbjct: 21 IQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNEEREDRRTLGLVLLRGEEV 79
>gi|224117856|ref|XP_002317685.1| predicted protein [Populus trichocarpa]
gi|222860750|gb|EEE98297.1| predicted protein [Populus trichocarpa]
Length = 250
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQE-ARLLGLVMVPGQHI 58
+ DGR LVG F+ DR N++LG C E+ + K+ N +E R LGLV++ G+ +
Sbjct: 21 IQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNEEREDRRTLGLVLLRGEEV 79
>gi|118482995|gb|ABK93409.1| unknown [Populus trichocarpa]
Length = 286
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQE-ARLLGLVMVPGQHI 58
+ DGR LVG F+ DR N++LG C E+ + K+ N +E R LGLV++ G+ +
Sbjct: 21 IQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNEEREDRRTLGLVLLRGEEV 79
>gi|5870129|gb|AAD54488.1| small nuclear ribonucleoprotein B [Homo sapiens]
Length = 234
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE-REEKRVLGLVLLRGENL 77
>gi|5870130|gb|AAD54489.1| small nuclear ribonucleoprotein B' [Homo sapiens]
Length = 243
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE-REEKRVLGLVLLRGENL 77
>gi|353236616|emb|CCA68607.1| hypothetical protein PIIN_02471 [Piriformospora indica DSM 11827]
Length = 112
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 8/60 (13%)
Query: 3 DGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKE--ENGAQEARLLGLVMVPGQHIPA 60
DGR+ +G F CTD++ N+++ E+ P F+ ENG R +G++M P +HI A
Sbjct: 41 DGRIFLGNFACTDKELNIVMTQVYEF--PVGFQDDHLVENG----RFVGMLMFPWRHITA 94
>gi|443734551|gb|ELU18483.1| hypothetical protein CAPTEDRAFT_165566 [Capitella teleta]
Length = 183
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR +GTFL D+ N+ILG C E+ V + +E R+LGLV++ G+++
Sbjct: 22 LLDGRTFIGTFLAFDKHMNLILGDCDEFR--RVKPKGKGADKEEKRVLGLVLLRGENL 77
>gi|325180181|emb|CCA14583.1| AlNc14C4G652 [Albugo laibachii Nc14]
Length = 130
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 9/67 (13%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEEN---------GAQEARLLGLV 51
+TDGRV+VG+F C D+ N+IL E+ S ++++ + R LGLV
Sbjct: 55 ITDGRVIVGSFYCLDKQFNIILTDAKEWRSNSESDTEKSREWFPDDLLCDSDTLRSLGLV 114
Query: 52 MVPGQHI 58
++ G++I
Sbjct: 115 LITGKYI 121
>gi|198419524|ref|XP_002123396.1| PREDICTED: similar to small nuclear ribonucleoprotein
polypeptides B and B1 isoform 2 [Ciona intestinalis]
Length = 146
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 3 DGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
DGRV +GTF D+ N+IL C E+ V K +E R LGLV++ G+H+
Sbjct: 2 DGRVFIGTFKAFDKHMNLILVDCDEFR--RVRPKKGATDREEKRTLGLVLLRGEHL 55
>gi|47211209|emb|CAF90166.1| unnamed protein product [Tetraodon nigroviridis]
Length = 268
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 28 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPE-REEKRVLGLVLLRGENL 84
>gi|356501499|ref|XP_003519562.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Glycine max]
Length = 282
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLS-PEVFESKEENGA--QEARLLGLVMVPGQH 57
+ DGR LVG F+ DR N++LG C E+ P K GA ++ R LGLV++ G+
Sbjct: 21 IQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKPAEGADREDRRTLGLVLLRGEE 80
Query: 58 I 58
+
Sbjct: 81 V 81
>gi|402219027|gb|EJT99102.1| hypothetical protein DACRYDRAFT_39269, partial [Dacryopinax sp.
DJM-731 SS1]
Length = 59
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 8/60 (13%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHIPA 60
+TDGRV +GTF C D++ N++L + EY + E G R + ++MVP +
Sbjct: 4 ITDGRVFIGTFACIDKEKNLVLINADEY--------RFEEGRWMDRYVAMIMVPWDLVKT 55
>gi|195116999|ref|XP_002003038.1| GI24574 [Drosophila mojavensis]
gi|193913613|gb|EDW12480.1| GI24574 [Drosophila mojavensis]
Length = 128
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 10/53 (18%)
Query: 6 VLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
VLVG F CTD D N+I+ C ++ P QE G VMVPG I
Sbjct: 60 VLVGIFSCTDHDKNLIIAKCDTFMHPN----------QEPITFGNVMVPGDQI 102
>gi|45382973|ref|NP_989930.1| small nuclear ribonucleoprotein-associated protein B' [Gallus
gallus]
gi|10720263|sp|Q9PV94.1|RSMB_CHICK RecName: Full=Small nuclear ribonucleoprotein-associated protein
B'; Short=snRNP-B'; Short=snRPB'; AltName: Full=Sm
protein B'; Short=Sm-B'; Short=SmB'
gi|5870119|gb|AAD54485.1|AF134830_1 small nuclear ribonucleoprotein B' [Gallus gallus]
Length = 240
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGRV +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRVFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPE-REEKRVLGLVLLRGENL 77
>gi|350536589|ref|NP_001232486.1| small nuclear ribonucleoprotein-associated protein N [Taeniopygia
guttata]
gi|197129675|gb|ACH46173.1| putative small nuclear ribonucleoprotein polypeptide B variant 1
[Taeniopygia guttata]
Length = 240
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGRV +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRVFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPE-REEKRVLGLVLLRGENL 77
>gi|449433521|ref|XP_004134546.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Cucumis sativus]
gi|449490639|ref|XP_004158663.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Cucumis sativus]
Length = 284
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLS-PEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR LVG F+ DR N++LG C E+ P K E R LGLV++ G+ +
Sbjct: 21 IQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEV 79
>gi|355721040|gb|AES07133.1| Small nuclear ribonucleoprotein associated protein B [Mustela
putorius furo]
Length = 132
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE-REEKRVLGLVLLRGENL 77
>gi|326932120|ref|XP_003212168.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Meleagris gallopavo]
Length = 224
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGRV +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 5 LQDGRVFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPE-REEKRVLGLVLLRGENL 61
>gi|354473769|ref|XP_003499105.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B-like [Cricetulus griseus]
Length = 339
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 129 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE-REEKRVLGLVLLRGENL 185
>gi|327288953|ref|XP_003229189.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Anolis carolinensis]
Length = 318
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGRV +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 99 LQDGRVFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPE-REEKRVLGLVLLRGENL 155
>gi|311274576|ref|XP_003134384.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Sus scrofa]
Length = 143
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE-REEKRVLGLVLLRGENL 77
>gi|27371057|gb|AAH41275.1| Snrpn-prov protein [Xenopus laevis]
Length = 236
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPE-REEKRVLGLVLLRGENL 77
>gi|148235975|ref|NP_001080161.1| small nuclear ribonucleoparticle-associated protein (snRNP) mRNA,
clone Sm51 [Xenopus laevis]
gi|114107804|gb|AAI23124.1| Snrpn protein [Xenopus laevis]
Length = 236
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPE-REEKRVLGLVLLRGENL 77
>gi|47575712|ref|NP_001001198.1| small nuclear ribonucleoprotein polypeptides B and B1 [Xenopus
(Silurana) tropicalis]
gi|45501101|gb|AAH67325.1| SNRPN upstream reading frame [Xenopus (Silurana) tropicalis]
gi|49898984|gb|AAH76700.1| SNRPN upstream reading frame [Xenopus (Silurana) tropicalis]
Length = 237
Score = 43.1 bits (100), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPE-REEKRVLGLVLLRGENL 77
>gi|431894230|gb|ELK04030.1| Small nuclear ribonucleoprotein-associated proteins B and B'
[Pteropus alecto]
Length = 356
Score = 43.1 bits (100), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 137 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE-REEKRVLGLVLLRGENL 193
>gi|337459|gb|AAA36578.1| small nuclear ribonucleoprotein particle (SmB), partial [Homo
sapiens]
Length = 224
Score = 43.1 bits (100), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 14 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE-REEKRVLGLVLLRGENL 70
>gi|86438323|gb|AAI12635.1| SNRPB protein [Bos taurus]
Length = 239
Score = 43.1 bits (100), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE-REEKRVLGLVLLRGENL 77
>gi|213512296|ref|NP_001134522.1| Small nuclear ribonucleoprotein-associated protein B [Salmo
salar]
gi|209734002|gb|ACI67870.1| Small nuclear ribonucleoprotein-associated protein B [Salmo
salar]
gi|223647212|gb|ACN10364.1| Small nuclear ribonucleoprotein-associated protein B [Salmo
salar]
gi|223673087|gb|ACN12725.1| Small nuclear ribonucleoprotein-associated protein B [Salmo
salar]
Length = 237
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPE-REEKRVLGLVLLRGENL 77
>gi|395506057|ref|XP_003757352.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' [Sarcophilus harrisii]
Length = 240
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE-REEKRVLGLVLLRGENL 77
>gi|351715057|gb|EHB17976.1| Small nuclear ribonucleoprotein-associated protein N
[Heterocephalus glaber]
Length = 237
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL CGE+ + K+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCGEFRKIKPKNPKQPE-REEKRVLGLVLLCGENL 77
>gi|343960905|dbj|BAK62042.1| zinc finger protein 343 [Pan troglodytes]
Length = 319
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 13 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE-REEKRVLGLVLLRGENL 69
>gi|326427722|gb|EGD73292.1| hypothetical protein PTSG_05008 [Salpingoeca sp. ATCC 50818]
Length = 123
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESK---EENGAQEARLLGLVMVPGQH 57
++DGR++ G F C D N++L E+ P + + +++ + R +GLVM+PG H
Sbjct: 22 VSDGRIVQGVFSCVDNGCNIVLTHANEWKGPPITGADAWPKDDELEFRRPIGLVMIPGDH 81
Query: 58 I 58
+
Sbjct: 82 V 82
>gi|297799992|ref|XP_002867880.1| hypothetical protein ARALYDRAFT_492815 [Arabidopsis lyrata subsp.
lyrata]
gi|297313716|gb|EFH44139.1| hypothetical protein ARALYDRAFT_492815 [Arabidopsis lyrata subsp.
lyrata]
Length = 258
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQE-ARLLGLVMVPGQHI 58
+ DGR LVG F+ DR N++LG C E+ + K+ N +E R LGLV++ G+ +
Sbjct: 21 IQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKINEEREDRRTLGLVLLRGEEV 79
>gi|337461|gb|AAA36579.1| small nuclear ribonucleoprotein particle (SmB'), partial [Homo
sapiens]
Length = 233
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 14 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE-REEKRVLGLVLLRGENL 70
>gi|6678053|ref|NP_033251.1| small nuclear ribonucleoprotein-associated protein B [Mus
musculus]
gi|134038|sp|P27048.1|RSMB_MOUSE RecName: Full=Small nuclear ribonucleoprotein-associated protein
B; Short=snRNP-B; Short=snRPB; AltName: Full=Sm protein
B; Short=Sm-B; Short=SmB
gi|200992|gb|AAA40119.1| Sm-B protein [Mus musculus]
gi|74226859|dbj|BAE27074.1| unnamed protein product [Mus musculus]
gi|146327314|gb|AAI41605.1| Small nuclear ribonucleoprotein B [synthetic construct]
gi|147898161|gb|AAI40305.1| Small nuclear ribonucleoprotein B [synthetic construct]
gi|148696304|gb|EDL28251.1| mCG9909 [Mus musculus]
Length = 231
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE-REEKRVLGLVLLRGENL 77
>gi|417397681|gb|JAA45874.1| Putative u1 snrnp component [Desmodus rotundus]
Length = 240
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE-REEKRVLGLVLLRGENL 77
>gi|380791233|gb|AFE67492.1| small nuclear ribonucleoprotein-associated protein N, partial
[Macaca mulatta]
Length = 228
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE-REEKRVLGLVLLRGENL 77
>gi|50540540|ref|NP_991230.1| small nuclear ribonucleoprotein polypeptides B and B1 [Danio
rerio]
gi|8099650|gb|AAF72188.1| snRNP-associated protein [Danio rerio]
gi|41351028|gb|AAH65601.1| Small nuclear ribonucleoprotein polypeptides B and B1 [Danio
rerio]
Length = 239
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPE-REEKRVLGLVLLRGENL 77
>gi|12643865|sp|Q9TU67.1|RSMB_ERIEU RecName: Full=Small nuclear ribonucleoprotein-associated protein
B'; Short=snRNP-B'; Short=snRPB'; AltName: Full=Sm
protein B'; Short=Sm-B'; Short=SmB'
gi|5870111|gb|AAD54481.1|AF134826_1 small nuclear ribonucleoprotein B' [Erinaceus europaeus]
Length = 240
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE-REEKRVLGLVLLRGENL 77
>gi|4507125|ref|NP_003082.1| small nuclear ribonucleoprotein-associated proteins B and B'
isoform B [Homo sapiens]
gi|189339196|ref|NP_599185.1| small nuclear ribonucleoprotein-associated protein B [Rattus
norvegicus]
gi|383872951|ref|NP_001244645.1| small nuclear ribonucleoprotein polypeptides B and B1 [Macaca
mulatta]
gi|73991485|ref|XP_542930.2| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 1 [Canis lupus familiaris]
gi|114680543|ref|XP_001156133.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 2 [Pan troglodytes]
gi|149733143|ref|XP_001497520.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B'-like isoform 1 [Equus caballus]
gi|297706685|ref|XP_002830162.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 2 [Pongo abelii]
gi|301766854|ref|XP_002918830.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Ailuropoda melanoleuca]
gi|332248647|ref|XP_003273476.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 1 [Nomascus leucogenys]
gi|332248651|ref|XP_003273478.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 3 [Nomascus leucogenys]
gi|332857915|ref|XP_003316862.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' [Pan troglodytes]
gi|395752104|ref|XP_003779360.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' [Pongo abelii]
gi|395752106|ref|XP_003779361.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' [Pongo abelii]
gi|395752108|ref|XP_003779362.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' [Pongo abelii]
gi|395829985|ref|XP_003788117.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 1 [Otolemur garnettii]
gi|397501307|ref|XP_003821331.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 1 [Pan paniscus]
gi|397501311|ref|XP_003821333.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 3 [Pan paniscus]
gi|397501313|ref|XP_003821334.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 4 [Pan paniscus]
gi|402883005|ref|XP_003905021.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 1 [Papio anubis]
gi|402883009|ref|XP_003905023.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 3 [Papio anubis]
gi|403300777|ref|XP_003941093.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 1 [Saimiri boliviensis boliviensis]
gi|403300781|ref|XP_003941095.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 3 [Saimiri boliviensis boliviensis]
gi|410954253|ref|XP_003983780.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 2 [Felis catus]
gi|426390712|ref|XP_004061743.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 1 [Gorilla gorilla gorilla]
gi|426390716|ref|XP_004061745.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 3 [Gorilla gorilla gorilla]
gi|426390718|ref|XP_004061746.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 4 [Gorilla gorilla gorilla]
gi|426390720|ref|XP_004061747.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 5 [Gorilla gorilla gorilla]
gi|441639072|ref|XP_004090180.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' [Nomascus leucogenys]
gi|315583601|pdb|3PGW|B Chain B, Crystal Structure Of Human U1 Snrnp
gi|315583610|pdb|3PGW|Q Chain Q, Crystal Structure Of Human U1 Snrnp
gi|29410|emb|CAA33902.1| unnamed protein product [Homo sapiens]
gi|6018503|emb|CAB57867.1| snRNP B protein [Homo sapiens]
gi|51593415|gb|AAH80516.1| Small nuclear ribonucleoprotein polypeptides B and B1 [Homo
sapiens]
gi|119631002|gb|EAX10597.1| small nuclear ribonucleoprotein polypeptides B and B1, isoform
CRA_b [Homo sapiens]
gi|149023280|gb|EDL80174.1| rCG26118, isoform CRA_a [Rattus norvegicus]
gi|165971421|gb|AAI58687.1| Snrpb protein [Rattus norvegicus]
gi|189069168|dbj|BAG35506.1| unnamed protein product [Homo sapiens]
gi|208967442|dbj|BAG73735.1| small nuclear ribonucleoprotein polypeptides B and B1 [synthetic
construct]
gi|312151034|gb|ADQ32029.1| small nuclear ribonucleoprotein polypeptides B and B1 [synthetic
construct]
gi|380785189|gb|AFE64470.1| small nuclear ribonucleoprotein-associated proteins B and B'
isoform B [Macaca mulatta]
gi|383420993|gb|AFH33710.1| small nuclear ribonucleoprotein-associated proteins B and B'
isoform B' [Macaca mulatta]
gi|410215070|gb|JAA04754.1| small nuclear ribonucleoprotein polypeptides B and B1 [Pan
troglodytes]
gi|410265026|gb|JAA20479.1| small nuclear ribonucleoprotein polypeptides B and B1 [Pan
troglodytes]
gi|410303132|gb|JAA30166.1| small nuclear ribonucleoprotein polypeptides B and B1 [Pan
troglodytes]
Length = 231
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE-REEKRVLGLVLLRGENL 77
>gi|38150007|ref|NP_937859.1| small nuclear ribonucleoprotein-associated proteins B and B'
isoform B' [Homo sapiens]
gi|73991487|ref|XP_861671.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 4 [Canis lupus familiaris]
gi|114680541|ref|XP_525398.2| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 3 [Pan troglodytes]
gi|149733145|ref|XP_001497533.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B'-like isoform 2 [Equus caballus]
gi|297706683|ref|XP_002830161.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 1 [Pongo abelii]
gi|332248649|ref|XP_003273477.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 2 [Nomascus leucogenys]
gi|348581828|ref|XP_003476679.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B'-like [Cavia porcellus]
gi|395829987|ref|XP_003788118.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 2 [Otolemur garnettii]
gi|397501309|ref|XP_003821332.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 2 [Pan paniscus]
gi|402883007|ref|XP_003905022.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 2 [Papio anubis]
gi|403300779|ref|XP_003941094.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 2 [Saimiri boliviensis boliviensis]
gi|410954251|ref|XP_003983779.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 1 [Felis catus]
gi|426390714|ref|XP_004061744.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 2 [Gorilla gorilla gorilla]
gi|426390722|ref|XP_004061748.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 6 [Gorilla gorilla gorilla]
gi|441639076|ref|XP_004090181.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' [Nomascus leucogenys]
gi|134037|sp|P14678.2|RSMB_HUMAN RecName: Full=Small nuclear ribonucleoprotein-associated proteins
B and B'; Short=snRNP-B; AltName: Full=Sm protein B/B';
Short=Sm-B/B'; Short=SmB/B'
gi|6018504|emb|CAB57868.1| snRNP B' protein [Homo sapiens]
gi|48146055|emb|CAG33250.1| SNRPB [Homo sapiens]
gi|119631001|gb|EAX10596.1| small nuclear ribonucleoprotein polypeptides B and B1, isoform
CRA_a [Homo sapiens]
gi|383408773|gb|AFH27600.1| small nuclear ribonucleoprotein-associated proteins B and B'
isoform B' [Macaca mulatta]
gi|410215074|gb|JAA04756.1| small nuclear ribonucleoprotein polypeptide N [Pan troglodytes]
gi|410265024|gb|JAA20478.1| small nuclear ribonucleoprotein polypeptides B and B1 [Pan
troglodytes]
gi|410303130|gb|JAA30165.1| small nuclear ribonucleoprotein polypeptides B and B1 [Pan
troglodytes]
Length = 240
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE-REEKRVLGLVLLRGENL 77
>gi|432111113|gb|ELK34499.1| Small nuclear ribonucleoprotein-associated protein B' [Myotis
davidii]
Length = 240
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE-REEKRVLGLVLLRGENL 77
>gi|351701359|gb|EHB04278.1| Small nuclear ribonucleoprotein-associated protein B, partial
[Heterocephalus glaber]
Length = 229
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE-REEKRVLGLVLLRGENL 77
>gi|426241118|ref|XP_004014439.1| PREDICTED: small nuclear ribonucleoprotein-associated protein B'
isoform 2 [Ovis aries]
Length = 231
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE-REEKRVLGLVLLRGENL 77
>gi|15237095|ref|NP_193777.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|30685110|ref|NP_849414.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|79325195|ref|NP_001031682.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|238480869|ref|NP_001154258.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|5262167|emb|CAB45810.1| putative snRNP protein [Arabidopsis thaliana]
gi|7268840|emb|CAB79044.1| putative snRNP protein [Arabidopsis thaliana]
gi|28393634|gb|AAO42236.1| putative snRNP protein [Arabidopsis thaliana]
gi|28827492|gb|AAO50590.1| putative snRNP protein [Arabidopsis thaliana]
gi|222423490|dbj|BAH19715.1| AT4G20440 [Arabidopsis thaliana]
gi|332658930|gb|AEE84330.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|332658931|gb|AEE84331.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|332658932|gb|AEE84332.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|332658933|gb|AEE84333.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
Length = 257
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQE-ARLLGLVMVPGQHI 58
+ DGR LVG F+ DR N++LG C E+ + K+ N +E R LGLV++ G+ +
Sbjct: 21 IQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKINEEREDRRTLGLVLLRGEEV 79
>gi|291388823|ref|XP_002710954.1| PREDICTED: small nuclear ribonucleoprotein polypeptide B/B-like
[Oryctolagus cuniculus]
Length = 196
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE-REEKRVLGLVLLRGENL 77
>gi|344236342|gb|EGV92445.1| Small nuclear ribonucleoprotein-associated protein B [Cricetulus
griseus]
Length = 223
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 13 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE-REEKRVLGLVLLRGENL 69
>gi|348540539|ref|XP_003457745.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Oreochromis niloticus]
Length = 256
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 37 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPE-REEKRVLGLVLLRGENL 93
>gi|77736407|ref|NP_001029903.1| small nuclear ribonucleoprotein-associated protein B' [Bos
taurus]
gi|426241116|ref|XP_004014438.1| PREDICTED: small nuclear ribonucleoprotein-associated protein B'
isoform 1 [Ovis aries]
gi|75056662|sp|Q58DW4.1|RSMB_BOVIN RecName: Full=Small nuclear ribonucleoprotein-associated protein
B'; Short=snRNP-B'; Short=snRPB'; AltName: Full=Sm
protein B'; Short=Sm-B'; Short=SmB'
gi|61552980|gb|AAX46330.1| small nuclear ribonucleoprotein polypeptide B/B' isoform B' [Bos
taurus]
gi|296481179|tpg|DAA23294.1| TPA: small nuclear ribonucleoprotein-associated protein B' [Bos
taurus]
Length = 240
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE-REEKRVLGLVLLRGENL 77
>gi|77020260|ref|NP_001029144.1| small nuclear ribonucleoprotein-associated protein B' isoform 2
[Monodelphis domestica]
gi|10720265|sp|Q9TU66.1|RSMB_MONDO RecName: Full=Small nuclear ribonucleoprotein-associated protein
B'; Short=snRNP-B'; Short=snRPB'; AltName: Full=Sm
protein B'; Short=Sm-B'; Short=SmB'
gi|5870113|gb|AAD54482.1|AF134827_1 small nuclear ribonucleoprotein B' [Monodelphis domestica]
Length = 240
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE-REEKRVLGLVLLRGENL 77
>gi|116784827|gb|ABK23485.1| unknown [Picea sitchensis]
Length = 113
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQ 56
+TDGRV VG F C D+ N+IL EY S + E R LGL+++ +
Sbjct: 35 VTDGRVFVGKFHCLDKQGNIILYDAVEYRQITKPSSSSASNCMEHRSLGLILISAR 90
>gi|147901727|ref|NP_001089822.1| small nuclear ribonucleoprotein polypeptides B and B1 [Xenopus
laevis]
gi|83318209|gb|AAI08498.1| MGC130840 protein [Xenopus laevis]
Length = 234
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPE-REEKRVLGLVLLRGENL 77
>gi|432858790|ref|XP_004068940.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Oryzias latipes]
Length = 240
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPE-REEKRVLGLVLLRGENL 77
>gi|260819010|ref|XP_002604675.1| hypothetical protein BRAFLDRAFT_94837 [Branchiostoma floridae]
gi|229290003|gb|EEN60686.1| hypothetical protein BRAFLDRAFT_94837 [Branchiostoma floridae]
Length = 219
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ D RV +GTF D+ N+IL C E+ K+E +E R+LGLV++ G++I
Sbjct: 21 LQDSRVFIGTFKAFDKHMNLILVDCDEFRKIRPKSQKQEE-REEKRVLGLVLLRGENI 77
>gi|410932467|ref|XP_003979615.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like, partial [Takifugu rubripes]
Length = 225
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPE-REEKRVLGLVLLRGENL 77
>gi|390462470|ref|XP_002747491.2| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B'-like isoform 1 [Callithrix jacchus]
Length = 373
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 154 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE-REEKRVLGLVLLRGENL 210
>gi|321466061|gb|EFX77059.1| hypothetical protein DAPPUDRAFT_305959 [Daphnia pulex]
Length = 234
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGA---QEARLLGLVMVPGQH 57
+ D R +GTF D+ N+ILG C E+ + +K GA +E R+LGLV++ G++
Sbjct: 21 LQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKAKINKSGVGATEREEKRVLGLVLLRGEN 80
Query: 58 I 58
I
Sbjct: 81 I 81
>gi|344279453|ref|XP_003411502.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Loxodonta africana]
Length = 341
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 122 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE-REEKRVLGLVLLRGENL 178
>gi|225734041|pdb|3CW1|A Chain A, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734050|pdb|3CW1|H Chain H, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734059|pdb|3CW1|I Chain I, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734068|pdb|3CW1|J Chain J, Crystal Structure Of Human Spliceosomal U1 Snrnp
Length = 174
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE-REEKRVLGLVLLRGENL 77
>gi|324510990|gb|ADY44587.1| Small nuclear ribonucleoprotein-associated protein B [Ascaris
suum]
Length = 165
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ D R VG F D+ N++L C E+ + + K+ +E R LGLV++ G+HI
Sbjct: 21 LQDSRTFVGYFRAFDKHMNILLSECEEFRAIKPKPGKKSAPEEEMRTLGLVLLRGEHI 78
>gi|295442813|ref|NP_595273.2| NatC N-acetyltransferase non catalytic Sm-like domain subunit Naa38
(predicted) [Schizosaccharomyces pombe 972h-]
gi|259016433|sp|O43080.2|YHS3_SCHPO RecName: Full=Uncharacterized protein C947.03c
gi|254745574|emb|CAA17031.2| NatC N-acetyltransferase non catalytic Sm-like domain subunit Naa38
(predicted) [Schizosaccharomyces pombe]
Length = 116
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 12/58 (20%)
Query: 3 DGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHIPA 60
D R +G FLCTDR+ IL + EY +R LGLV++PG+HI +
Sbjct: 66 DERKFIGKFLCTDREGAAILSNTTEY------------NKGFSRALGLVVIPGKHIKS 111
>gi|195156229|ref|XP_002019003.1| GL25656 [Drosophila persimilis]
gi|194115156|gb|EDW37199.1| GL25656 [Drosophila persimilis]
Length = 146
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 10/58 (17%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ D +L+G CTDRD N+IL C +L N +E G VMVPG+ I
Sbjct: 42 LEDKLILIGILSCTDRDQNLILSDCATFL----------NEGEEPISRGDVMVPGEKI 89
>gi|194766131|ref|XP_001965178.1| GF21498 [Drosophila ananassae]
gi|190617788|gb|EDV33312.1| GF21498 [Drosophila ananassae]
Length = 122
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 10/53 (18%)
Query: 6 VLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
VL+G F CTD D N++L CG Y+S A++ +G VMVPG I
Sbjct: 57 VLIGIFSCTDHDENLVLSHCGTYVSE----------AEKPISVGKVMVPGHQI 99
>gi|393219862|gb|EJD05348.1| hypothetical protein FOMMEDRAFT_165802 [Fomitiporia mediterranea
MF3/22]
Length = 258
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 10/55 (18%)
Query: 2 TDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQ 56
+DGRV VGTF+C D+ N+IL + EY E R + +VMVP +
Sbjct: 44 SDGRVFVGTFVCVDKQLNLILANTDEY----------SANKPEGRYVTMVMVPWR 88
>gi|190247|gb|AAA60151.1| snRNP polypeptide B [Homo sapiens]
Length = 285
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE-REEKRVLGLVLLRGENL 77
>gi|159490030|ref|XP_001702992.1| predicted protein [Chlamydomonas reinhardtii]
gi|158270899|gb|EDO96730.1| predicted protein [Chlamydomonas reinhardtii]
Length = 106
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 7/57 (12%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQH 57
+T GRVL G F C D+ N+IL + E L+ G +E R +GLV+VP Q
Sbjct: 26 LTSGRVLEGDFSCLDKQGNIILSNTLEQLTT-------ATGKKEERHMGLVLVPVQQ 75
>gi|53690154|gb|AAU89981.1| small nuclear ribonucleoprotein polypeptide B [Homo sapiens]
Length = 231
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 5/60 (8%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEY--LSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + P+ E E +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSEQAER---EEKRVLGLVLLRGENL 77
>gi|345571386|gb|EGX54200.1| hypothetical protein AOL_s00004g233 [Arthrobotrys oligospora ATCC
24927]
Length = 101
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 3 DGRVLVGTFLCTDRDANVILGSCGEYLSPEV-FESKEENGAQEARLLGLVMVPGQHI 58
D R+ VG CTDRDAN+IL EY P+ E +R LGLV+V G I
Sbjct: 25 DTRMFVGELKCTDRDANLILARTHEYRIPKFKLEDMGRKVDLTSRYLGLVVVMGVDI 81
>gi|75057373|sp|Q9N1Q0.1|RSMB_MACEU RecName: Full=Small nuclear ribonucleoprotein-associated protein
B'; Short=snRNP-B'; Short=snRPB'; AltName: Full=Sm
protein B'; Short=Sm-B'; Short=SmB'
gi|7208221|gb|AAF40115.1|AF176323_1 small nuclear ribonucleoprotein B' [Macropus eugenii]
Length = 240
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE-REEKRVLGLVLLRGENL 77
>gi|270008314|gb|EFA04762.1| hypothetical protein TcasGA2_TC030631 [Tribolium castaneum]
Length = 214
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ D R +GTF D+ N+ILG C E+ + SK E +E R+LG V++ G+ I
Sbjct: 21 LQDSRTFIGTFKAFDKHMNMILGDCEEFRKIKPKNSKVER--EEKRVLGFVLLRGESI 76
>gi|91082993|ref|XP_974329.1| PREDICTED: similar to Small nuclear ribonucleoprotein-associated
protein B (snRNP-B) (Sm protein B) (Sm-B) (SmB)
[Tribolium castaneum]
Length = 212
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ D R +GTF D+ N+ILG C E+ + SK E +E R+LG V++ G+ I
Sbjct: 19 LQDSRTFIGTFKAFDKHMNMILGDCEEFRKIKPKNSKVER--EEKRVLGFVLLRGESI 74
>gi|145491875|ref|XP_001431936.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124399043|emb|CAK64538.1| unnamed protein product [Paramecium tetraurelia]
Length = 126
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 3 DGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
DGR+LVGTFL D+ NVIL C EY + + + R LG+++V G +I
Sbjct: 21 DGRMLVGTFLAFDKHLNVILSECEEYR----IRKQGIHEIETKRTLGMIIVRGDNI 72
>gi|223995851|ref|XP_002287599.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220976715|gb|EED95042.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 113
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 9/67 (13%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGA---------QEARLLGLV 51
++DGR ++GTFL D+ N++L E+ + SK GA QE R LGL+
Sbjct: 18 LSDGRTIIGTFLAFDKHLNLVLVDTEEFRTLRSSNSKSNGGAGRAAIVEERQEKRSLGLI 77
Query: 52 MVPGQHI 58
++ G+++
Sbjct: 78 ILRGENV 84
>gi|3142634|gb|AAC78612.1| small nuclear ribonucleoprotein N [Mus musculus]
Length = 240
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGRV +GTF D+ N+IL C E+ + +K+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRVFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE-REEKRVLGLVLLRGENL 77
>gi|365984090|ref|XP_003668878.1| hypothetical protein NDAI_0B06030 [Naumovozyma dairenensis CBS
421]
gi|343767645|emb|CCD23635.1| hypothetical protein NDAI_0B06030 [Naumovozyma dairenensis CBS
421]
Length = 173
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 3 DGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQ-----EARLLGLVMVPGQH 57
DGRV +G L D+ N+IL C E P+ K N Q E R+LGL ++ G+H
Sbjct: 26 DGRVYIGELLAFDKYMNLILSDCVEERIPKTQLPKLRNKVQDSIKIEKRVLGLTILRGEH 85
Query: 58 I 58
+
Sbjct: 86 V 86
>gi|145499845|ref|XP_001435907.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124403043|emb|CAK68510.1| unnamed protein product [Paramecium tetraurelia]
Length = 138
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 3 DGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
DGR+LVGTFL D+ NVIL C EY + + + R LG+++V G +I
Sbjct: 21 DGRMLVGTFLAFDKHLNVILSECEEYR----IRKQGIHEIETKRTLGMIIVRGDNI 72
>gi|441617090|ref|XP_003277213.2| PREDICTED: small nuclear ribonucleoprotein-associated protein
N-like [Nomascus leucogenys]
Length = 248
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + +K+ +E R+LGLV++ G+++
Sbjct: 61 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE-REEKRVLGLVLLRGENL 117
>gi|340508672|gb|EGR34332.1| hypothetical protein IMG5_016230 [Ichthyophthirius multifiliis]
Length = 1010
Score = 42.4 bits (98), Expect = 0.038, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 3 DGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
DGR+LVGTFL D+ N+++ E+ P + K + Q R+LGLV++ G++I
Sbjct: 852 DGRMLVGTFLAFDKHLNLVISETEEF-RPIKPKKKGDPERQTKRILGLVIIRGENI 906
>gi|281338409|gb|EFB13993.1| hypothetical protein PANDA_020738 [Ailuropoda melanoleuca]
Length = 162
Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + +K+ +E R+LGLV++ G+++
Sbjct: 23 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE-REEKRVLGLVLLRGENL 79
>gi|242019279|ref|XP_002430089.1| Small nuclear ribonucleoprotein-associated protein B, putative
[Pediculus humanus corporis]
gi|212515170|gb|EEB17351.1| Small nuclear ribonucleoprotein-associated protein B, putative
[Pediculus humanus corporis]
Length = 187
Score = 42.4 bits (98), Expect = 0.038, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ D R +GTF D+ N+ILG C E+ + SKE E R LG V++ GQ+I
Sbjct: 13 LQDSRTFIGTFKAFDKHMNLILGDCEEFRRTKPKNSKEAE-RDEKRSLGFVLLRGQNI 69
>gi|348685362|gb|EGZ25177.1| hypothetical protein PHYSODRAFT_285054 [Phytophthora sojae]
Length = 145
Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 21/79 (26%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYL----------SPEVFESKEENGAQEARL--- 47
++DGRV+VG F C D+ NVIL E+ +V + E +EAR
Sbjct: 60 ISDGRVVVGRFHCFDKHQNVILKDAREFAPTRLGLSKNSKDKVARAAEARDQEEARFAGV 119
Query: 48 --------LGLVMVPGQHI 58
LG+ +VPG+HI
Sbjct: 120 LLPPGSRSLGMTLVPGKHI 138
>gi|198476131|ref|XP_002132270.1| GA25374 [Drosophila pseudoobscura pseudoobscura]
gi|198137558|gb|EDY69672.1| GA25374 [Drosophila pseudoobscura pseudoobscura]
Length = 146
Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 10/58 (17%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ D +L+G CTDRD N+IL C +L N +E G VMVPG+ I
Sbjct: 42 LEDKLILIGILSCTDRDQNLILSDCATFL----------NEGEEPISRGDVMVPGEKI 89
>gi|351713280|gb|EHB16199.1| Small nuclear ribonucleoprotein-associated protein B'
[Heterocephalus glaber]
Length = 195
Score = 42.0 bits (97), Expect = 0.041, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 5/60 (8%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEY--LSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DG + +GTF D+ N+IL C EY + P+ F+ E +E R+LGLV++ G+++
Sbjct: 21 LQDGWIFIGTFKAFDKHMNLILCDCDEYRKIKPKNFKQAER---EEKRVLGLVLLRGKNL 77
>gi|347543711|tpg|DAA05809.1| TPA_inf: small nuclear ribonucleoprotein polypeptide N
[Monodelphis domestica]
Length = 240
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + +K+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE-REEKRVLGLVLLRGENL 77
>gi|395506055|ref|XP_003757351.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
N-like [Sarcophilus harrisii]
Length = 240
Score = 42.0 bits (97), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + +K+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE-REEKRVLGLVLLRGENL 77
>gi|348552642|ref|XP_003462136.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
N-like [Cavia porcellus]
Length = 248
Score = 42.0 bits (97), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + +K+ +E R+LGLV++ G+++
Sbjct: 29 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE-REEKRVLGLVLLRGENL 85
>gi|452846421|gb|EME48353.1| hypothetical protein DOTSEDRAFT_161831 [Dothistroma septosporum
NZE10]
Length = 105
Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 13/70 (18%)
Query: 2 TDGRVLVGTFLCTDRDANVILGSCGEYLSP-----EVFESKEE--------NGAQEARLL 48
+DGR VG CTD + N+IL EY P E S+ E N + R +
Sbjct: 29 SDGRTFVGQLKCTDNERNIILAMTHEYREPSQQDIERAMSRHEVEGGKGTFNVDMKKRFV 88
Query: 49 GLVMVPGQHI 58
GLV+VPG+ +
Sbjct: 89 GLVVVPGRFV 98
>gi|344297981|ref|XP_003420673.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
N-like [Loxodonta africana]
Length = 270
Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + +K+ +E R+LGLV++ G+++
Sbjct: 51 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE-REEKRVLGLVLLRGENL 107
>gi|402535855|gb|AFQ62603.1| small nuclear ribonucleoprotein N, partial [Phodopus sungorus]
Length = 220
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + +K+ +E R+LGLV++ G+++
Sbjct: 16 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE-REEKRVLGLVLLRGENL 72
>gi|351712657|gb|EHB15576.1| Small nuclear ribonucleoprotein-associated protein N, partial
[Heterocephalus glaber]
Length = 240
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + +K+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE-REEKRVLGLVLLRGENL 77
>gi|4507135|ref|NP_003088.1| small nuclear ribonucleoprotein-associated protein N [Homo
sapiens]
gi|7305509|ref|NP_038698.1| small nuclear ribonucleoprotein-associated protein N [Mus
musculus]
gi|13027644|ref|NP_073716.1| small nuclear ribonucleoprotein-associated protein N [Homo
sapiens]
gi|13027646|ref|NP_073717.1| small nuclear ribonucleoprotein-associated protein N [Homo
sapiens]
gi|13027648|ref|NP_073718.1| small nuclear ribonucleoprotein-associated protein N [Homo
sapiens]
gi|13027650|ref|NP_073719.1| small nuclear ribonucleoprotein-associated protein N [Homo
sapiens]
gi|13592085|ref|NP_112379.1| small nuclear ribonucleoprotein-associated protein N [Rattus
norvegicus]
gi|133725810|ref|NP_001076430.1| small nuclear ribonucleoprotein-associated protein N [Mus
musculus]
gi|133725813|ref|NP_001076431.1| small nuclear ribonucleoprotein-associated protein N [Mus
musculus]
gi|197101731|ref|NP_001127571.1| small nuclear ribonucleoprotein-associated protein N [Pongo
abelii]
gi|378404901|ref|NP_001243726.1| SNRPN upstream reading frame protein [Pan troglodytes]
gi|386781432|ref|NP_001248134.1| small nuclear ribonucleoprotein-associated protein N [Macaca
mulatta]
gi|291403982|ref|XP_002718330.1| PREDICTED: small nuclear ribonucleoprotein polypeptide N
[Oryctolagus cuniculus]
gi|395859900|ref|XP_003802265.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
N-like [Otolemur garnettii]
gi|397475699|ref|XP_003809265.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
N-like isoform 1 [Pan paniscus]
gi|402873730|ref|XP_003900718.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
N-like [Papio anubis]
gi|403308913|ref|XP_003944884.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
N-like [Saimiri boliviensis boliviensis]
gi|426378342|ref|XP_004055890.1| PREDICTED: small nuclear ribonucleoprotein-associated protein N
[Gorilla gorilla gorilla]
gi|52783793|sp|P63164.1|RSMN_RAT RecName: Full=Small nuclear ribonucleoprotein-associated protein
N; Short=snRNP-N; AltName: Full=Sm protein D;
Short=Sm-D; AltName: Full=Sm protein N; Short=Sm-N;
Short=SmN
gi|52783794|sp|P63162.1|RSMN_HUMAN RecName: Full=Small nuclear ribonucleoprotein-associated protein
N; Short=snRNP-N; AltName: Full=Sm protein D;
Short=Sm-D; AltName: Full=Sm protein N; Short=Sm-N;
Short=SmN; AltName: Full=Tissue-specific-splicing
protein
gi|52783795|sp|P63163.1|RSMN_MOUSE RecName: Full=Small nuclear ribonucleoprotein-associated protein
N; Short=snRNP-N; AltName: Full=Sm protein D;
Short=Sm-D; AltName: Full=Sm protein N; Short=Sm-N;
Short=SmN; AltName: Full=Tissue-specific-splicing
protein
gi|75070532|sp|Q5R6I0.1|RSMN_PONAB RecName: Full=Small nuclear ribonucleoprotein-associated protein
N; Short=snRNP-N; AltName: Full=Sm protein N;
Short=Sm-N; Short=SmN
gi|75071163|sp|Q60HD3.1|RSMN_MACFA RecName: Full=Small nuclear ribonucleoprotein-associated protein
N; Short=snRNP-N; AltName: Full=Sm protein N;
Short=Sm-N; Short=SmN
gi|15217059|gb|AAK92481.1|AF400432_1 small nuclear ribonucleoprotein polypeptide N [Homo sapiens]
gi|32040|emb|CAA33901.1| unnamed protein product [Homo sapiens]
gi|54117|emb|CAA44517.1| tissue specific splicing protein [Mus musculus]
gi|207006|gb|AAA42157.1| small nuclear ribonucleoparticle-associated protein [Rattus
norvegicus]
gi|251642|gb|AAA09579.1| SmN protein [Mus musculus]
gi|338247|gb|AAA36617.1| small nuclear ribonucleoprotein [Homo sapiens]
gi|386203|gb|AAB27138.1| SmN [Mus sp.]
gi|407470|emb|CAA45273.1| SmN [Mus musculus]
gi|1145775|gb|AAA98969.1| small nuclear ribonuleoprotein particle N [Homo sapiens]
gi|12653657|gb|AAH00611.1| SNRPN protein [Homo sapiens]
gi|12851037|dbj|BAB28927.1| unnamed protein product [Mus musculus]
gi|13112013|gb|AAH03180.1| Small nuclear ribonucleoprotein polypeptide N [Homo sapiens]
gi|18044571|gb|AAH19589.1| Small nuclear ribonucleoprotein N [Mus musculus]
gi|19264004|gb|AAH25178.1| Small nuclear ribonucleoprotein polypeptide N [Homo sapiens]
gi|19353029|gb|AAH24880.1| Small nuclear ribonucleoprotein N [Mus musculus]
gi|22137346|gb|AAH24777.1| SNRPN protein [Homo sapiens]
gi|47496647|emb|CAG29346.1| SNRPN [Homo sapiens]
gi|52782271|dbj|BAD51982.1| SNRPN upstream reading frame product [Macaca fascicularis]
gi|55731853|emb|CAH92634.1| hypothetical protein [Pongo abelii]
gi|55733355|emb|CAH93359.1| hypothetical protein [Pongo abelii]
gi|56585178|gb|AAH87671.1| Small nuclear ribonucleoprotein polypeptide N [Rattus norvegicus]
gi|67970918|dbj|BAE01801.1| unnamed protein product [Macaca fascicularis]
gi|67971268|dbj|BAE01976.1| unnamed protein product [Macaca fascicularis]
gi|74188458|dbj|BAE25860.1| unnamed protein product [Mus musculus]
gi|90075094|dbj|BAE87227.1| unnamed protein product [Macaca fascicularis]
gi|119578017|gb|EAW57613.1| hCG15924, isoform CRA_a [Homo sapiens]
gi|119578018|gb|EAW57614.1| hCG15924, isoform CRA_a [Homo sapiens]
gi|119578019|gb|EAW57615.1| hCG15924, isoform CRA_a [Homo sapiens]
gi|119578020|gb|EAW57616.1| hCG15924, isoform CRA_a [Homo sapiens]
gi|119578021|gb|EAW57617.1| hCG15924, isoform CRA_a [Homo sapiens]
gi|119578022|gb|EAW57618.1| hCG15924, isoform CRA_a [Homo sapiens]
gi|119578023|gb|EAW57619.1| hCG15924, isoform CRA_a [Homo sapiens]
gi|119578024|gb|EAW57620.1| hCG15924, isoform CRA_a [Homo sapiens]
gi|119578025|gb|EAW57621.1| hCG15924, isoform CRA_a [Homo sapiens]
gi|119578026|gb|EAW57622.1| hCG15924, isoform CRA_a [Homo sapiens]
gi|119578027|gb|EAW57623.1| hCG15924, isoform CRA_a [Homo sapiens]
gi|123987597|gb|ABM83812.1| small nuclear ribonucleoprotein polypeptide N [synthetic
construct]
gi|123999102|gb|ABM87134.1| small nuclear ribonucleoprotein polypeptide N [synthetic
construct]
gi|149029434|gb|EDL84670.1| rCG23696, isoform CRA_a [Rattus norvegicus]
gi|261859940|dbj|BAI46492.1| small nuclear ribonucleoprotein polypeptide N [synthetic
construct]
gi|312150238|gb|ADQ31631.1| SNRPN upstream reading frame [synthetic construct]
gi|380783149|gb|AFE63450.1| small nuclear ribonucleoprotein-associated protein N [Macaca
mulatta]
gi|383422565|gb|AFH34496.1| small nuclear ribonucleoprotein-associated protein N [Macaca
mulatta]
gi|384941646|gb|AFI34428.1| small nuclear ribonucleoprotein-associated protein N [Macaca
mulatta]
gi|384941648|gb|AFI34429.1| small nuclear ribonucleoprotein-associated protein N [Macaca
mulatta]
gi|410215072|gb|JAA04755.1| small nuclear ribonucleoprotein polypeptide N [Pan troglodytes]
gi|410257522|gb|JAA16728.1| small nuclear ribonucleoprotein polypeptide N [Pan troglodytes]
gi|410306930|gb|JAA32065.1| small nuclear ribonucleoprotein polypeptide N [Pan troglodytes]
gi|410338313|gb|JAA38103.1| small nuclear ribonucleoprotein polypeptide N [Pan troglodytes]
Length = 240
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + +K+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE-REEKRVLGLVLLRGENL 77
>gi|402535853|gb|AFQ62602.1| small nuclear ribonucleoprotein N, partial [Phodopus campbelli]
Length = 222
Score = 42.0 bits (97), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + +K+ +E R+LGLV++ G+++
Sbjct: 16 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE-REEKRVLGLVLLRGENL 72
>gi|355692540|gb|EHH27143.1| hypothetical protein EGK_17272 [Macaca mulatta]
Length = 244
Score = 42.0 bits (97), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + +K+ +E R+LGLV++ G+++
Sbjct: 25 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE-REEKRVLGLVLLRGENL 81
>gi|397475701|ref|XP_003809266.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
N-like isoform 2 [Pan paniscus]
gi|193784720|dbj|BAG53873.1| unnamed protein product [Homo sapiens]
gi|355777885|gb|EHH62921.1| hypothetical protein EGM_15778 [Macaca fascicularis]
Length = 244
Score = 42.0 bits (97), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + +K+ +E R+LGLV++ G+++
Sbjct: 25 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE-REEKRVLGLVLLRGENL 81
>gi|392512800|emb|CCI73964.1| ECU08_0545 [Encephalitozoon cuniculi GB-M1]
Length = 79
Score = 42.0 bits (97), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
M DGR + GT L D D NV+L C E F + + R+LGLV+V G +
Sbjct: 17 MRDGRWMEGTMLAVDEDVNVVLDDCEE------FRKAKRSRESRRRVLGLVVVRGDFV 68
>gi|344252129|gb|EGW08233.1| Small nuclear ribonucleoprotein-associated protein N [Cricetulus
griseus]
Length = 232
Score = 42.0 bits (97), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + +K+ +E R+LGLV++ G+++
Sbjct: 13 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE-REEKRVLGLVLLRGENL 69
>gi|432107554|gb|ELK32804.1| Small nuclear ribonucleoprotein-associated protein N [Myotis
davidii]
Length = 220
Score = 42.0 bits (97), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + +K+ +E R+LGLV++ G+++
Sbjct: 52 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE-REEKRVLGLVLLRGENL 108
>gi|196004222|ref|XP_002111978.1| expressed hypothetical protein [Trichoplax adhaerens]
gi|190585877|gb|EDV25945.1| expressed hypothetical protein [Trichoplax adhaerens]
Length = 247
Score = 42.0 bits (97), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ D R+ +GT L D+ N++LG C E+ + SK + +E R LGLV++ G+++
Sbjct: 21 LQDTRMFIGTLLAYDKHMNIVLGDCDEFRKIKSKSSKNQE-REEKRSLGLVILRGENL 77
>gi|389608761|dbj|BAM17992.1| small ribonucleoprotein particle protein SmB [Papilio xuthus]
Length = 188
Score = 42.0 bits (97), Expect = 0.050, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ D R +GTF D+ N+ILG C E+ + SK + +E R LG V++ G++I
Sbjct: 21 LQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD-REEKRTLGFVLLRGENI 77
>gi|343887452|ref|NP_001230628.1| small nuclear ribonucleoprotein polypeptide N [Sus scrofa]
Length = 240
Score = 42.0 bits (97), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + +K+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE-REEKRVLGLVLLRGENL 77
>gi|57045593|ref|XP_536165.1| PREDICTED: small nuclear ribonucleoprotein-associated protein N
isoform 4 [Canis lupus familiaris]
gi|149691049|ref|XP_001492752.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
N-like isoform 1 [Equus caballus]
gi|301789820|ref|XP_002930324.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
N-like [Ailuropoda melanoleuca]
gi|338717714|ref|XP_003363686.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
N-like isoform 2 [Equus caballus]
gi|417397683|gb|JAA45875.1| Putative u1 snrnp component [Desmodus rotundus]
Length = 240
Score = 42.0 bits (97), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + +K+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE-REEKRVLGLVLLRGENL 77
>gi|381352839|gb|AFG25597.1| SNRPN [Sus scrofa]
Length = 240
Score = 42.0 bits (97), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + +K+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE-REEKRVLGLVLLRGENL 77
>gi|119631003|gb|EAX10598.1| small nuclear ribonucleoprotein polypeptides B and B1, isoform
CRA_c [Homo sapiens]
gi|194375339|dbj|BAG62782.1| unnamed protein product [Homo sapiens]
Length = 234
Score = 42.0 bits (97), Expect = 0.051, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE-REEKRVLGLVLLRGENL 77
>gi|255557237|ref|XP_002519649.1| conserved hypothetical protein [Ricinus communis]
gi|223541066|gb|EEF42622.1| conserved hypothetical protein [Ricinus communis]
Length = 118
Score = 41.6 bits (96), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPG 55
+ DGR +GTF C D+ N+IL EY S + E R LGL+++P
Sbjct: 45 IKDGRFFLGTFHCIDKQGNIILQDAVEYRSTR----RTSPSPMEQRCLGLILIPA 95
>gi|307188198|gb|EFN73030.1| Small nuclear ribonucleoprotein-associated protein B [Camponotus
floridanus]
Length = 209
Score = 41.6 bits (96), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ D R +GTF D+ N+ILG C E+ + +K+ +E R+LG V++ G++I
Sbjct: 13 LQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKPKNTKQPE-REEKRVLGFVLLRGENI 69
>gi|403275639|ref|XP_003929545.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
N-like [Saimiri boliviensis boliviensis]
Length = 240
Score = 41.6 bits (96), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + +K+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE-REEKRVLGLVLLRGENL 77
>gi|326428499|gb|EGD74069.1| hypothetical protein PTSG_12357 [Salpingoeca sp. ATCC 50818]
Length = 212
Score = 41.6 bits (96), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 3 DGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
DGR+LVGTF+ D+ N++L C E+ + + + +E + R LG +++ G+++
Sbjct: 23 DGRMLVGTFMAYDKHMNMVLSDCEEFRTVKAKKGTDEQ--TQKRALGFILLRGENV 76
>gi|118197470|gb|ABK78698.1| small nuclear ribonucleoprotein N [Macropus eugenii]
Length = 239
Score = 41.6 bits (96), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + +K+ +E R+LGLV++ G+++
Sbjct: 20 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE-REEKRVLGLVLLRGENL 76
>gi|119331232|ref|NP_001073265.1| small nuclear ribonucleoprotein-associated protein N [Bos taurus]
gi|426248002|ref|XP_004017755.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
N-like isoform 1 [Ovis aries]
gi|115311861|sp|Q17QN3.1|RSMN_BOVIN RecName: Full=Small nuclear ribonucleoprotein-associated protein
N; Short=snRNP-N; AltName: Full=Sm protein N;
Short=Sm-N; Short=SmN
gi|109659180|gb|AAI18261.1| Small nuclear ribonucleoprotein polypeptide N [Bos taurus]
gi|152001106|gb|AAI47855.1| SNRPN protein [Bos taurus]
gi|296475633|tpg|DAA17748.1| TPA: small nuclear ribonucleoprotein-associated protein N [Bos
taurus]
Length = 240
Score = 41.6 bits (96), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + +K+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE-REEKRVLGLVLLRGENL 77
>gi|440892840|gb|ELR45856.1| Small nuclear ribonucleoprotein-associated protein N, partial
[Bos grunniens mutus]
Length = 240
Score = 41.6 bits (96), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + +K+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE-REEKRVLGLVLLRGENL 77
>gi|308493888|ref|XP_003109133.1| hypothetical protein CRE_08129 [Caenorhabditis remanei]
gi|308246546|gb|EFO90498.1| hypothetical protein CRE_08129 [Caenorhabditis remanei]
Length = 115
Score = 41.6 bits (96), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+TDGR + GT + TD+DAN++ E +P + Q R LG M+ +++
Sbjct: 43 LTDGRYIRGTLIATDKDANMVFNKADERWTP--------SADQGTRYLGQAMISKKYV 92
>gi|307193681|gb|EFN76364.1| Small nuclear ribonucleoprotein-associated protein B
[Harpegnathos saltator]
Length = 208
Score = 41.6 bits (96), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ D R +GTF D+ N+ILG C E+ + +K+ +E R+LG V++ G++I
Sbjct: 13 LQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKPKNTKQPE-REEKRVLGFVLLRGENI 69
>gi|302755206|ref|XP_002961027.1| hypothetical protein SELMODRAFT_8958 [Selaginella moellendorffii]
gi|302767128|ref|XP_002966984.1| hypothetical protein SELMODRAFT_8957 [Selaginella moellendorffii]
gi|300164975|gb|EFJ31583.1| hypothetical protein SELMODRAFT_8957 [Selaginella moellendorffii]
gi|300171966|gb|EFJ38566.1| hypothetical protein SELMODRAFT_8958 [Selaginella moellendorffii]
Length = 94
Score = 41.6 bits (96), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEY--LSPEVFESKEENG--AQEARLLGLVMVPGQ 56
+ DGR LVG F+ DR N +LG E+ L P+ K++ G ++ R LGL+++ G+
Sbjct: 21 IQDGRQLVGKFMAFDRHMNFVLGDTEEFRRLPPKKGAGKQQGGEEREDRRTLGLILLRGE 80
Query: 57 HI 58
+
Sbjct: 81 EV 82
>gi|389585815|dbj|GAB68545.1| small nuclear ribonucleoprotein associated protein B', partial
[Plasmodium cynomolgi strain B]
Length = 235
Score = 41.6 bits (96), Expect = 0.067, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
++D R VGTFL DR NV+L E+ +SKE + + R++GL+++ G++I
Sbjct: 53 VSDTRYFVGTFLSYDRHMNVVLVDAEEF---RKVKSKENSSKEIKRVIGLILIRGENI 107
>gi|302308391|ref|NP_985287.2| AER432Cp [Ashbya gossypii ATCC 10895]
gi|299789433|gb|AAS53111.2| AER432Cp [Ashbya gossypii ATCC 10895]
gi|374108513|gb|AEY97420.1| FAER432Cp [Ashbya gossypii FDAG1]
Length = 148
Score = 41.6 bits (96), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 3 DGRVLVGTFLCTDRDANVILGSC-GEYLSPEVFESKEENGAQ----EARLLGLVMVPGQH 57
DGRV VGT L D N++L C E LS + +++ AQ E R+LGL ++ G+H
Sbjct: 25 DGRVYVGTLLAFDAHMNLVLADCVEERLSDHHVRNLQKDHAQRPQPERRVLGLTILRGEH 84
Query: 58 I 58
+
Sbjct: 85 V 85
>gi|71411743|ref|XP_808107.1| small nuclear ribonucleoprotein protein [Trypanosoma cruzi strain
CL Brener]
gi|70872243|gb|EAN86256.1| small nuclear ribonucleoprotein protein, putative [Trypanosoma
cruzi]
Length = 114
Score = 41.2 bits (95), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR L G L DR NV+LG E S E + +E G R LGLV++ G H+
Sbjct: 18 LIDGRELTGKLLVYDRHMNVVLGDATE--SREETKKMKEAGISPQRSLGLVLLRGVHV 73
>gi|134545|sp|P17136.1|RSMB_RAT RecName: Full=Small nuclear ribonucleoprotein-associated protein
B; Short=snRNP-B; Short=snRPB; AltName: Full=SM11;
AltName: Full=Sm protein B; Short=Sm-B; Short=SmB
gi|207010|gb|AAA42159.1| small nuclear ribonucleoparticle-associated protein, partial
[Rattus norvegicus]
Length = 214
Score = 41.2 bits (95), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ +GR+ +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 4 LQNGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE-REEKRVLGLVLLRGENL 60
>gi|334311663|ref|XP_001374371.2| PREDICTED: hypothetical protein LOC100022567 [Monodelphis
domestica]
Length = 465
Score = 41.2 bits (95), Expect = 0.075, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + +K+ +E R+LGLV++ G+++
Sbjct: 246 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE-REEKRVLGLVLLRGENL 302
>gi|444729301|gb|ELW69726.1| Small nuclear ribonucleoprotein-associated protein N [Tupaia
chinensis]
Length = 234
Score = 41.2 bits (95), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ D R+ +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 21 LQDSRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE-REEKRVLGLVLLRGENL 77
>gi|70937084|ref|XP_739397.1| ribonucleoprotein [Plasmodium chabaudi chabaudi]
gi|56516366|emb|CAH81154.1| ribonucleoprotein, putative [Plasmodium chabaudi chabaudi]
Length = 141
Score = 41.2 bits (95), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
++D R VGTFL DR N++L E+ + KE N + R++GL+++ G +I
Sbjct: 19 ISDTRYYVGTFLSYDRHMNIVLVDAEEF---RRVKCKENNSKEIKRVVGLILIRGDNI 73
>gi|71018737|ref|XP_759599.1| hypothetical protein UM03452.1 [Ustilago maydis 521]
gi|46099357|gb|EAK84590.1| hypothetical protein UM03452.1 [Ustilago maydis 521]
Length = 382
Score = 41.2 bits (95), Expect = 0.079, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 9/59 (15%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEY-LSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR G F+C D N+IL E L+PE G R +G+VM+PG+++
Sbjct: 29 IPDGRAFRGVFICVDSGKNIILADTDETRLTPE--------GRTTIRNVGMVMIPGEYV 79
>gi|291396335|ref|XP_002714531.1| PREDICTED: small nuclear ribonucleoprotein polypeptide B/B'
isoform 1 [Oryctolagus cuniculus]
Length = 231
Score = 41.2 bits (95), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ + TF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIATFKVFDKHVNLILCDCDEFRKIKPKNSKQAK-REEKRVLGLVLLRGENL 77
>gi|291396337|ref|XP_002714532.1| PREDICTED: small nuclear ribonucleoprotein polypeptide B/B'
isoform 2 [Oryctolagus cuniculus]
Length = 240
Score = 41.2 bits (95), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ + TF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIATFKVFDKHVNLILCDCDEFRKIKPKNSKQAK-REEKRVLGLVLLRGENL 77
>gi|156838765|ref|XP_001643082.1| hypothetical protein Kpol_423p14 [Vanderwaltozyma polyspora DSM
70294]
gi|156113674|gb|EDO15224.1| hypothetical protein Kpol_423p14 [Vanderwaltozyma polyspora DSM
70294]
Length = 175
Score = 41.2 bits (95), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 9/65 (13%)
Query: 3 DGRVLVGTFLCTDRDANVILGSCGEYLSP-----EVFESKEENGAQ----EARLLGLVMV 53
DGRV +G + D+ NV+LG C E P ++ ES A E R+LGL ++
Sbjct: 28 DGRVYIGQLMAYDKHMNVVLGDCVEERIPKTQLQKLKESTNNVSASDIKVEKRVLGLTIL 87
Query: 54 PGQHI 58
G+HI
Sbjct: 88 RGEHI 92
>gi|431917322|gb|ELK16855.1| Small nuclear ribonucleoprotein-associated protein N [Pteropus
alecto]
Length = 225
Score = 41.2 bits (95), Expect = 0.085, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + +K+ +E R+LGLV++ G+++
Sbjct: 13 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE-REEKRVLGLVLLRGENL 69
>gi|36495|emb|CAA34288.1| SmB /B' autoimmune antigene [Homo sapiens]
Length = 218
Score = 41.2 bits (95), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 3 DGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
DGR+ +GTF D+ N+IL C E+ + +K+ +E R+LGLV++ G+++
Sbjct: 1 DGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE-REEKRVLGLVLLRGENL 55
>gi|356549110|ref|XP_003542940.1| PREDICTED: uncharacterized protein LOC100792908 [Glycine max]
Length = 107
Score = 40.8 bits (94), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPG 55
+ DGR +G+F C D+ N+IL EY S + E R LGL+++P
Sbjct: 30 IKDGRFFLGSFYCIDKQGNIILQDAVEYRSTR----QSSPSPMEQRCLGLILIPS 80
>gi|313238876|emb|CBY13872.1| unnamed protein product [Oikopleura dioica]
gi|313241111|emb|CBY33408.1| unnamed protein product [Oikopleura dioica]
Length = 155
Score = 40.8 bits (94), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 5/60 (8%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEY--LSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR +GTF D+ N+IL C E+ + P+ E+ +E R LGLV++ G+H+
Sbjct: 20 LQDGRNFIGTFKAFDKHMNLILVDCDEFRRIKPKKGETAVR---EEKRTLGLVLLRGEHL 76
>gi|225429803|ref|XP_002282858.1| PREDICTED: uncharacterized protein LOC100262900 [Vitis vinifera]
Length = 116
Score = 40.8 bits (94), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVP 54
++DGR +G+F C D+ N+IL EY S + E R LGL+++P
Sbjct: 43 VSDGRFFLGSFHCMDKQGNIILQDTVEYRSTR----RSSPSPMEQRCLGLILIP 92
>gi|148298654|ref|NP_001091757.1| small nuclear ribonucleoprotein polypeptide [Bombyx mori]
gi|87248407|gb|ABD36256.1| small nuclear ribonucleoprotein polypeptide [Bombyx mori]
Length = 187
Score = 40.8 bits (94), Expect = 0.099, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ D R +GTF D+ N+ILG C E+ + SK + +E R LG V++ G++I
Sbjct: 21 LQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD-REEKRTLGFVLLRGENI 77
>gi|307110889|gb|EFN59124.1| hypothetical protein CHLNCDRAFT_49967 [Chlorella variabilis]
Length = 111
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 8/57 (14%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQH 57
+ DGRVLVG F C D++ N+IL + +E + G +++G V+VP H
Sbjct: 38 VKDGRVLVGDFTCLDKEGNIILTN--------TYEHMQLGGQLHEKVMGQVLVPAAH 86
>gi|410083152|ref|XP_003959154.1| hypothetical protein KAFR_0I02400 [Kazachstania africana CBS
2517]
gi|372465744|emb|CCF60019.1| hypothetical protein KAFR_0I02400 [Kazachstania africana CBS
2517]
Length = 171
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
Query: 3 DGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESK----------EENGAQEARLLGLVM 52
DGRV +G L D+ N+IL C E P+ ++K +E E R LGL++
Sbjct: 27 DGRVYIGELLAFDKHMNLILNDCVEERIPKTQQNKIRKTSDDKMLKEAVKIEKRTLGLII 86
Query: 53 VPGQHI 58
+ G+H+
Sbjct: 87 LRGEHV 92
>gi|332022693|gb|EGI62970.1| Small nuclear ribonucleoprotein-associated protein B [Acromyrmex
echinatior]
Length = 207
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ D R +GTF D+ N+ILG C E+ + +K+ +E R+LG V++ G++I
Sbjct: 21 LQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKPKNTKQPE-REEKRVLGFVLLRGENI 77
>gi|323450318|gb|EGB06200.1| hypothetical protein AURANDRAFT_16819, partial [Aureococcus
anophagefferens]
Length = 81
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFES----KEENGAQEARLLGLVMVPGQ 56
+ D R LVGTFL D+ N++L C EY + + EE +E R LGLV++ G+
Sbjct: 13 IADSRTLVGTFLAFDKHMNLVLADCEEYRKIKAKKGTVGISEER--EEKRTLGLVLLRGE 70
Query: 57 HI 58
+
Sbjct: 71 MV 72
>gi|325089449|gb|EGC42759.1| conserved hypothetical protein [Ajellomyces capsulatus H88]
Length = 147
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 15/68 (22%)
Query: 6 VLVGTFLCTD-RDANVILGSCGEYLSPEVFESKEENGAQE--------------ARLLGL 50
+L F CTD +D N+IL + EY P + E + N +E +R +GL
Sbjct: 44 ILRALFKCTDNQDRNIILSTTHEYRYPTIPEHEPANPTREDDYTATGVVKADMTSRYIGL 103
Query: 51 VMVPGQHI 58
V+VPG +I
Sbjct: 104 VVVPGHYI 111
>gi|126644035|ref|XP_001388176.1| hypothetical protein [Cryptosporidium parvum Iowa II]
gi|126117253|gb|EAZ51353.1| conserved hypothetical protein [Cryptosporidium parvum Iowa II]
Length = 139
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 3 DGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
D RV+VG + DR N++L C EY + K E + R LGL+M+ G++I
Sbjct: 15 DDRVMVGNLMAFDRHMNLVLSDCQEYRRVK----KGEESKELKRSLGLIMLRGENI 66
>gi|296081775|emb|CBI20780.3| unnamed protein product [Vitis vinifera]
Length = 78
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVP 54
++DGR +G+F C D+ N+IL EY S + E R LGL+++P
Sbjct: 5 VSDGRFFLGSFHCMDKQGNIILQDTVEYRSTR----RSSPSPMEQRCLGLILIP 54
>gi|440472733|gb|ELQ41575.1| hypothetical protein OOU_Y34scaffold00267g12 [Magnaporthe oryzae
Y34]
gi|440485126|gb|ELQ65112.1| hypothetical protein OOW_P131scaffold00525g12 [Magnaporthe oryzae
P131]
Length = 131
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 20/77 (25%)
Query: 2 TDGRVLVGTFLCTDRDANVILGSCGEYLSP--------------------EVFESKEENG 41
TD R+ G F CTD D N+IL EY P + +
Sbjct: 23 TDTRMFYGVFKCTDPDRNLILAHAHEYRHPTPEQVAAHAKKVAAAKDAGEADADDDKMTL 82
Query: 42 AQEARLLGLVMVPGQHI 58
+R LGL++VPG+HI
Sbjct: 83 GMTSRYLGLIVVPGEHI 99
>gi|449439179|ref|XP_004137364.1| PREDICTED: uncharacterized protein LOC101206200 [Cucumis sativus]
gi|449523864|ref|XP_004168943.1| PREDICTED: uncharacterized protein LOC101229488 [Cucumis sativus]
Length = 112
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPG 55
+ DGR +G F C D+ N+IL EY S + E R LGL+++P
Sbjct: 41 IKDGRFFLGNFYCIDKQGNIILQDAVEYRSTR----RSSPSPMEQRCLGLILIPN 91
>gi|357622892|gb|EHJ74252.1| small nuclear ribonucleoprotein polypeptide [Danaus plexippus]
Length = 180
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ D R +GTF D+ N+ILG C E+ + +K + +E R LG V++ G++I
Sbjct: 13 LQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNTKTVD-REEKRTLGFVLLRGENI 69
>gi|331223175|ref|XP_003324260.1| hypothetical protein PGTG_05066 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309303250|gb|EFP79841.1| hypothetical protein PGTG_05066 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 114
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 8/58 (13%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ G F+C D+ N++L + ES N A R +GL+++P +HI
Sbjct: 36 IVDGRIFEGIFVCLDKPVNLVLD--------QALESFSNNTATTPRDVGLILIPIRHI 85
>gi|443895809|dbj|GAC73154.1| hypothetical protein PANT_8c00098 [Pseudozyma antarctica T-34]
Length = 178
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 7/56 (12%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQ 56
+ DGR GTFLC D +N+IL E +G +R +G+VM+PG
Sbjct: 89 IPDGRAFCGTFLCVDSGSNIILSDTDEL-------RLTSSGGTSSRNVGMVMIPGN 137
>gi|389642681|ref|XP_003718973.1| hypothetical protein MGG_00154 [Magnaporthe oryzae 70-15]
gi|351641526|gb|EHA49389.1| hypothetical protein MGG_00154 [Magnaporthe oryzae 70-15]
Length = 131
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 20/77 (25%)
Query: 2 TDGRVLVGTFLCTDRDANVILGSCGEYLSP--------------------EVFESKEENG 41
TD R+ G F CTD D N+IL EY P + +
Sbjct: 23 TDTRMFYGVFKCTDPDRNLILAHAHEYRHPTPEQVAAHAKKVAAAKDAGEADADDDKMTL 82
Query: 42 AQEARLLGLVMVPGQHI 58
+R LGL++VPG+HI
Sbjct: 83 GMTSRYLGLIVVPGEHI 99
>gi|109505083|ref|XP_001067879.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
N-like [Rattus norvegicus]
gi|293342849|ref|XP_002725336.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
N-like [Rattus norvegicus]
Length = 240
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR +GTF D+ N+IL C E+ + +K+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRFFIGTFKAFDKHRNLILCDCDEFRKIKPKNAKQPE-REEKRVLGLVLLRGENL 77
>gi|206694|gb|AAA42059.1| snRNP-associated polypeptide N [Rattus norvegicus]
Length = 240
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR +GTF D+ N+IL C E+ + +K+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRFFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE-REEKRVLGLVLLRGENL 77
>gi|392577898|gb|EIW71026.1| hypothetical protein TREMEDRAFT_27133 [Tremella mesenterica DSM
1558]
Length = 113
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEEN----GAQEARLLGLVMVPGQ 56
+ DGR LVG L D+ N +L C E+ + +V + N Q+ R LGLV++ G+
Sbjct: 13 LNDGRSLVGQMLAYDKHMNFVLAECEEFRTVKVTKDAPPNEPTPTVQQKRTLGLVILRGE 72
Query: 57 HI 58
I
Sbjct: 73 TI 74
>gi|326519875|dbj|BAK03862.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 126
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPG 55
+ DGR +G F C D+ N+IL EY S + +E R LGL+++P
Sbjct: 52 VNDGRYFLGLFHCVDKQGNIILQDAVEYRSA---RRSSPSAPKEERCLGLILIPA 103
>gi|320163461|gb|EFW40360.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 140
Score = 40.0 bits (92), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
M+DGR++ G F+ TDR+ N+++ E V +E R +GLV+ PG H+
Sbjct: 41 MSDGRIVTGRFVGTDRELNLVMSEGEETQQLRVGGGDQEFTRPIYRKVGLVIAPGNHV 98
>gi|391329361|ref|XP_003739143.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Metaseiulus occidentalis]
Length = 209
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ D R +GTF D+ N+IL C E+ + + +E +E R+LGLV++ G++I
Sbjct: 21 LQDSRSFIGTFKAFDKHMNLILTECEEFRKIKAKQGGQER--EEKRVLGLVLLRGENI 76
>gi|302686860|ref|XP_003033110.1| hypothetical protein SCHCODRAFT_67091 [Schizophyllum commune
H4-8]
gi|300106804|gb|EFI98207.1| hypothetical protein SCHCODRAFT_67091 [Schizophyllum commune
H4-8]
Length = 179
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEY--LSPEVFESKEENGAQE-ARLLGLVMVPGQH 57
+ DGR LVG L DR N++L C E+ + P+ +E QE R LGLV++ G+
Sbjct: 23 INDGRQLVGQMLAFDRHMNLVLAECEEFRRIRPKKKPGQETQPEQEVKRALGLVILRGET 82
Query: 58 I 58
+
Sbjct: 83 V 83
>gi|322779204|gb|EFZ09540.1| hypothetical protein SINV_80286 [Solenopsis invicta]
Length = 344
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ D R +GTF D+ N+ILG C E+ + +K+ +E R+LG V++ G++I
Sbjct: 20 LQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKPKNTKQPE-REEKRVLGFVLLRGENI 76
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ D R +GTF D+ N+ILG C E+ + +K+ +E R+LG V++ G++I
Sbjct: 149 LQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKPKNTKQPE-REEKRVLGFVLLRGENI 205
>gi|195146742|ref|XP_002014343.1| GL19145 [Drosophila persimilis]
gi|194106296|gb|EDW28339.1| GL19145 [Drosophila persimilis]
Length = 205
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ D R +GTF D+ N+ILG C E+ SK +E R+LG V++ G++I
Sbjct: 27 LQDSRTFIGTFKAFDKHMNLILGDCEEFRKIRSKNSKVPE-REEKRVLGFVLLRGENI 83
>gi|301093096|ref|XP_002997397.1| small nuclear ribonucleoprotein-associated protein, putative
[Phytophthora infestans T30-4]
gi|262110795|gb|EEY68847.1| small nuclear ribonucleoprotein-associated protein, putative
[Phytophthora infestans T30-4]
Length = 216
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 7/62 (11%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARL----LGLVMVPGQ 56
+ D RVL+G F+ D+ N++LG C E+ ++K ++ E R+ LGLV++ G+
Sbjct: 21 LQDSRVLIGYFMAFDKHMNLVLGDCEEF---RTLKAKVKSAVSEERVEKRHLGLVLLRGE 77
Query: 57 HI 58
+
Sbjct: 78 SV 79
>gi|296215020|ref|XP_002753951.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
N-like [Callithrix jacchus]
Length = 250
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + +K+ +E ++LGLV++ G+++
Sbjct: 31 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE-REEKQVLGLVLLRGENL 87
>gi|348669540|gb|EGZ09362.1| hypothetical protein PHYSODRAFT_304932 [Phytophthora sojae]
Length = 217
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 7/62 (11%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARL----LGLVMVPGQ 56
+ D RVL+G F+ D+ N++LG C E+ ++K ++ E R+ LGLV++ G+
Sbjct: 21 LQDSRVLIGYFMAFDKHMNLVLGDCEEF---RTLKAKVKSAVSEERVEKRHLGLVLLRGE 77
Query: 57 HI 58
+
Sbjct: 78 SV 79
>gi|449017018|dbj|BAM80420.1| similar to Sm protein B [Cyanidioschyzon merolae strain 10D]
Length = 80
Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 11/59 (18%)
Query: 2 TDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHIPA 60
TDGR+L G L D +N++L C E G R LG+V+V G+H+ A
Sbjct: 16 TDGRLLAGKLLAFDAHSNLLLSHC-----------TERRGESAKRYLGMVLVRGEHVLA 63
>gi|198475808|ref|XP_001357165.2| GA18820 [Drosophila pseudoobscura pseudoobscura]
gi|198137969|gb|EAL34232.2| GA18820 [Drosophila pseudoobscura pseudoobscura]
Length = 191
Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ D R +GTF D+ N+ILG C E+ SK +E R+LG V++ G++I
Sbjct: 13 LQDSRTFIGTFKAFDKHMNLILGDCEEFRKIRSKNSKVPE-REEKRVLGFVLLRGENI 69
>gi|195339821|ref|XP_002036515.1| GM11667 [Drosophila sechellia]
gi|195578207|ref|XP_002078957.1| GD22258 [Drosophila simulans]
gi|194130395|gb|EDW52438.1| GM11667 [Drosophila sechellia]
gi|194190966|gb|EDX04542.1| GD22258 [Drosophila simulans]
Length = 199
Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ D R +GTF D+ N+ILG C E+ SK +E R+LG V++ G++I
Sbjct: 21 LQDSRTFIGTFKAFDKHMNLILGDCEEFRKIRSKNSKVPE-REEKRVLGFVLLRGENI 77
>gi|194859949|ref|XP_001969485.1| GG23931 [Drosophila erecta]
gi|195473671|ref|XP_002089116.1| SmB [Drosophila yakuba]
gi|38048415|gb|AAR10110.1| similar to Drosophila melanogaster SmB, partial [Drosophila
yakuba]
gi|190661352|gb|EDV58544.1| GG23931 [Drosophila erecta]
gi|194175217|gb|EDW88828.1| SmB [Drosophila yakuba]
Length = 199
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ D R +GTF D+ N+ILG C E+ SK +E R+LG V++ G++I
Sbjct: 21 LQDSRTFIGTFKAFDKHMNLILGDCEEFRKIRSKNSKVPE-REEKRVLGFVLLRGENI 77
>gi|320544917|ref|NP_001188780.1| small ribonucleoprotein particle protein SmB [Drosophila
melanogaster]
gi|10720262|sp|Q05856.1|RSMB_DROME RecName: Full=Small nuclear ribonucleoprotein-associated protein
B; Short=snRNP-B; AltName: Full=Sm protein B;
Short=Sm-B; Short=SmB
gi|290272|gb|AAA28858.1| ribonucleoprotein [Drosophila melanogaster]
gi|16769000|gb|AAL28719.1| LD14049p [Drosophila melanogaster]
gi|220952928|gb|ACL89007.1| SmB-PA [synthetic construct]
gi|318068414|gb|ADV37030.1| small ribonucleoprotein particle protein SmB [Drosophila
melanogaster]
Length = 199
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ D R +GTF D+ N+ILG C E+ SK +E R+LG V++ G++I
Sbjct: 21 LQDSRTFIGTFKAFDKHMNLILGDCEEFRKIRSKNSKVPE-REEKRVLGFVLLRGENI 77
>gi|195118784|ref|XP_002003916.1| GI18165 [Drosophila mojavensis]
gi|195384904|ref|XP_002051152.1| GJ14598 [Drosophila virilis]
gi|193914491|gb|EDW13358.1| GI18165 [Drosophila mojavensis]
gi|194147609|gb|EDW63307.1| GJ14598 [Drosophila virilis]
Length = 198
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ D R +GTF D+ N+ILG C E+ SK +E R+LG V++ G++I
Sbjct: 21 LQDSRTFIGTFKAFDKHMNLILGDCEEFRKIRSKNSKVPE-REEKRVLGFVLLRGENI 77
>gi|389750881|gb|EIM91954.1| hypothetical protein STEHIDRAFT_45105, partial [Stereum hirsutum
FP-91666 SS1]
Length = 80
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 2 TDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
TD R+ +GTF+ TD+D N++L + E+ S + + R +G VM+P + I
Sbjct: 22 TDHRIFLGTFVGTDKDLNILLVNTDEFR----ISSTTKPDPADGRYVGQVMIPWKMI 74
>gi|307105891|gb|EFN54138.1| hypothetical protein CHLNCDRAFT_135527 [Chlorella variabilis]
Length = 159
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR +VG F+ DR N++LG E+ + E ++ R+LGLV++ G +
Sbjct: 20 VVDGRQIVGRFMAFDRHMNLVLGDAEEFRKLPPKKGVAEEDREQRRVLGLVILRGDEV 77
>gi|67623475|ref|XP_668020.1| small nuclear ribonucleoprotein [Cryptosporidium hominis TU502]
gi|54659204|gb|EAL37793.1| similar to small nuclear ribonucleoprotein [Cryptosporidium
hominis]
Length = 139
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 3 DGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
D RV+VG + DR N++L C EY + K E + R LGL+M+ G++I
Sbjct: 15 DDRVMVGNLMAFDRHMNLVLSDCQEYRRVK----KGEEPKELKRSLGLIMLRGENI 66
>gi|194761826|ref|XP_001963124.1| GF14098 [Drosophila ananassae]
gi|190616821|gb|EDV32345.1| GF14098 [Drosophila ananassae]
Length = 199
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ D R +GTF D+ N+ILG C E+ SK +E R+LG V++ G++I
Sbjct: 21 LQDSRTFIGTFKAFDKHMNLILGDCEEFRKIRSKNSKVPE-REEKRVLGFVLLRGENI 77
>gi|357447241|ref|XP_003593896.1| Small nuclear ribonucleoprotein-associated protein B [Medicago
truncatula]
gi|357447245|ref|XP_003593898.1| Small nuclear ribonucleoprotein-associated protein B [Medicago
truncatula]
gi|355482944|gb|AES64147.1| Small nuclear ribonucleoprotein-associated protein B [Medicago
truncatula]
gi|355482946|gb|AES64149.1| Small nuclear ribonucleoprotein-associated protein B [Medicago
truncatula]
gi|388515765|gb|AFK45944.1| unknown [Medicago truncatula]
Length = 113
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPG 55
+ DGR +G F C D+ N+IL EY S + E R +GL+++P
Sbjct: 39 IKDGRFFLGNFYCMDKQGNIILQDTVEYRSTR----RSSPSPMEQRCIGLILIPS 89
>gi|224136910|ref|XP_002322446.1| predicted protein [Populus trichocarpa]
gi|222869442|gb|EEF06573.1| predicted protein [Populus trichocarpa]
Length = 109
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPG 55
+ DGR +G+F C D+ N+IL EY + + E R LGL+++P
Sbjct: 37 IKDGRFFLGSFHCIDKQGNIILQDAVEYRNTH----RSSPSPMEQRCLGLILIPS 87
>gi|195051180|ref|XP_001993048.1| GH13302 [Drosophila grimshawi]
gi|193900107|gb|EDV98973.1| GH13302 [Drosophila grimshawi]
Length = 198
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ D R +GTF D+ N+ILG C E+ SK +E R+LG V++ G++I
Sbjct: 21 LQDSRTFIGTFKAFDKHMNLILGDCEEFRKIRSKNSKVPE-REEKRVLGFVLLRGENI 77
>gi|388502276|gb|AFK39204.1| unknown [Lotus japonicus]
Length = 111
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPG 55
+ DGR +G F C D+ N+IL EY S + E R LGL+++P
Sbjct: 37 IKDGRFFLGGFYCIDKQGNIILQDAVEYRSTR----RSSPSPMEQRCLGLILIPS 87
>gi|366994896|ref|XP_003677212.1| hypothetical protein NCAS_0F03750 [Naumovozyma castellii CBS
4309]
gi|342303080|emb|CCC70859.1| hypothetical protein NCAS_0F03750 [Naumovozyma castellii CBS
4309]
Length = 167
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 3 DGRVLVGTFLCTDRDANVILGSCGEYLSP--EVFESKEENGAQ----EARLLGLVMVPGQ 56
DGRV VG + D+ N+IL C E P +V + + + E R+LGLV++ G+
Sbjct: 25 DGRVYVGELMAFDKHMNLILSDCIEERVPRTQVLKLRSTKTVEAVKVEKRVLGLVILRGE 84
Query: 57 HI 58
H+
Sbjct: 85 HV 86
>gi|297800232|ref|XP_002868000.1| hypothetical protein ARALYDRAFT_914851 [Arabidopsis lyrata subsp.
lyrata]
gi|297313836|gb|EFH44259.1| hypothetical protein ARALYDRAFT_914851 [Arabidopsis lyrata subsp.
lyrata]
Length = 112
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPG 55
+ DGR +G F C D+ N+IL EY S K E R LG++++P
Sbjct: 39 IKDGRFFLGNFHCIDKQGNIILQDTVEYRSIR----KSSPSPTEQRCLGMILIPS 89
>gi|340052439|emb|CCC46719.1| putative small nuclear ribonucleoprotein protein [Trypanosoma
vivax Y486]
Length = 128
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHIPA 60
+TDGR L G L DR NV+L E S + + ++ G R LGL+++ G+H+ A
Sbjct: 18 LTDGRELTGKLLVYDRHMNVVLADTQE--SRKETKKMKDAGISPQRNLGLIVLRGEHVMA 75
>gi|325190755|emb|CCA25247.1| small nuclear ribonucleoproteinassociated protein pu [Albugo
laibachii Nc14]
Length = 218
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARL----LGLVMVPGQ 56
+ D R LVG F+ D+ N++LG C E+ +SK + E R+ LGLV++ G+
Sbjct: 21 LQDSRALVGYFMAFDKHMNIVLGDCEEF---RTLKSKLKTNVSEERVEKRYLGLVLLRGE 77
Query: 57 HI 58
+
Sbjct: 78 SV 79
>gi|312374503|gb|EFR22046.1| hypothetical protein AND_15819 [Anopheles darlingi]
Length = 196
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 5/60 (8%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEY--LSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ D R+ +GTF D+ N+ILG C E+ + P+ + E +E R+LG V++ G +I
Sbjct: 13 LQDSRIFIGTFKAFDKHMNLILGDCEEFRKIKPKNNKLPER---EEKRVLGFVLLRGGNI 69
>gi|195434134|ref|XP_002065058.1| GK14876 [Drosophila willistoni]
gi|194161143|gb|EDW76044.1| GK14876 [Drosophila willistoni]
Length = 191
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ D R +GTF D+ N+ILG C E+ SK +E R+LG V++ G++I
Sbjct: 13 LQDSRTFIGTFKAFDKHMNLILGDCEEFRKIRSKNSKVPE-REEKRVLGFVLLRGENI 69
>gi|209881614|ref|XP_002142245.1| LSM domain-containing protein [Cryptosporidium muris RN66]
gi|209557851|gb|EEA07896.1| LSM domain-containing protein [Cryptosporidium muris RN66]
Length = 155
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 3 DGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
D R+LVG + D+ NV+L C EY S + K E+ + R LG +++ G++I
Sbjct: 15 DDRMLVGNLMAFDKHMNVVLSDCQEYRS---IKKKGEDLKEVKRSLGFIVLRGENI 67
>gi|402581979|gb|EJW75926.1| hypothetical protein WUBG_13167 [Wuchereria bancrofti]
Length = 160
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ D R VG F D+ N++L C E + K+ +E R LGLV++ G+HI
Sbjct: 13 LLDSRTFVGYFKAFDKHMNILLCDCEELRRIKPKPGKKITEGEEKRTLGLVLLRGEHI 70
>gi|71995057|ref|NP_490671.2| Protein Y48G1C.9 [Caenorhabditis elegans]
gi|373220035|emb|CCD71728.1| Protein Y48G1C.9 [Caenorhabditis elegans]
Length = 103
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHIPA 60
MTDGR + GT + TD+DAN++ E ++ + R LG M+ +H+ +
Sbjct: 39 MTDGRYIRGTMIATDKDANMVFNKADERWD-------KDPQLKGVRFLGQAMISKKHVES 91
>gi|296222281|ref|XP_002757118.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Callithrix jacchus]
Length = 240
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DG++ +GTF D+ N+IL C E+ + SK+ +E R+LGL ++ G+++
Sbjct: 21 LQDGQIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE-KEEKRVLGLALLRGENL 77
>gi|452980360|gb|EME80121.1| hypothetical protein MYCFIDRAFT_86773 [Pseudocercospora fijiensis
CIRAD86]
Length = 204
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 14/70 (20%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENG------------AQEARLL 48
M DGR LVG L D+ N++L C E+ +V + +G A+E R L
Sbjct: 19 MNDGRQLVGQMLAFDKHMNLVLADCEEFR--KVKRKAKASGAPGAQTGGQMIEAEEKRSL 76
Query: 49 GLVMVPGQHI 58
GL +V G HI
Sbjct: 77 GLAIVRGAHI 86
>gi|401424575|ref|XP_003876773.1| small nuclear ribonucleoprotein protein,putative [Leishmania
mexicana MHOM/GT/2001/U1103]
gi|322493016|emb|CBZ28301.1| small nuclear ribonucleoprotein protein,putative [Leishmania
mexicana MHOM/GT/2001/U1103]
Length = 111
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR + G L D+ NVILG E P+ + EE G R LGL+++ G+H+
Sbjct: 18 LDDGRTVTGKLLVFDKHMNVILGDALEE-RPQSKKMAEE-GVSSKRQLGLILLRGEHV 73
>gi|303289090|ref|XP_003063833.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226454901|gb|EEH52206.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 204
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEY--LSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR +VG F+ DR N++LG E+ L P+ ++EE Q R+LG +++ G+ +
Sbjct: 21 IVDGRQIVGRFMAFDRHMNIVLGDAEEFRKLPPKKGLTEEER--QVRRVLGFLLLRGEEV 78
>gi|392572048|gb|EIW65220.1| hypothetical protein TRAVEDRAFT_26096 [Trametes versicolor
FP-101664 SS1]
Length = 116
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEY-LSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+TDGRV +GTF TD+ N++L + EY L P+ EAR +G +MVP + +
Sbjct: 37 VTDGRVFLGTFAGTDKQLNLLLINADEYRLGPDAGPE-----GLEARYVGQIMVPWRLV 90
>gi|340375810|ref|XP_003386427.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Amphimedon queenslandica]
Length = 223
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 5/60 (8%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEY--LSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ VGTF+ D+ N++L C E+ + P+ + E +E R LGLV++ G ++
Sbjct: 20 LLDGRMFVGTFMAFDQHLNLVLADCEEFRKIRPKNQKLPER---EEKRTLGLVLLRGMNL 76
>gi|440795995|gb|ELR17104.1| LSM domain containing protein [Acanthamoeba castellanii str. Neff]
Length = 204
Score = 39.3 bits (90), Expect = 0.32, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHIPA 60
+ DGR+ VG FL D+ ++IL C EY ++ + E +E R GL+++ G+ I +
Sbjct: 100 IADGRIFVGRFLAFDKQRSMILSECREYRRVKIDDDGPEK--EEKRNAGLILIGGKFIKS 157
>gi|156540632|ref|XP_001599264.1| PREDICTED: small nuclear ribonucleoprotein-associated protein B
[Nasonia vitripennis]
Length = 217
Score = 39.3 bits (90), Expect = 0.32, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ D R +GTF D+ N+ILG C E+ + +K+ +E R+LG V++ G++I
Sbjct: 21 LQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKPKNTKQPE-REEKRVLGFVLLRGENI 77
>gi|124487908|gb|ABN12037.1| small nuclear ribonucleoprotein B'-like protein [Maconellicoccus
hirsutus]
Length = 135
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESK-EENGAQEARLLGLVMVPGQHI 58
+ DGR +GTF D+ N+IL C EY + +K + +E R LG V++ G +
Sbjct: 21 LQDGRTFIGTFKAFDKHMNLILSECDEY---RKYRTKGDAPPREEKRTLGFVLLRGDSV 76
>gi|157128615|ref|XP_001655156.1| small nuclear ribonucleoprotein-associated protein [Aedes
aegypti]
gi|94469378|gb|ABF18538.1| U1 snRNP component [Aedes aegypti]
gi|108882220|gb|EAT46445.1| AAEL002377-PA [Aedes aegypti]
Length = 205
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEY--LSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ D R +GTF D+ N+ILG C E+ + P+ + E +E R+LG V++ G +I
Sbjct: 21 LQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKPKNTKLPER---EEKRVLGFVLLRGGNI 77
>gi|351700863|gb|EHB03782.1| Small nuclear ribonucleoprotein-associated protein B'
[Heterocephalus glaber]
Length = 126
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DG++ +GTF D+ N+IL C E+ + +K+ +E R+ GLV++ G+++
Sbjct: 21 LQDGQIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE-REEKRVWGLVLLRGENL 77
>gi|68064661|ref|XP_674314.1| ribonucleoprotein [Plasmodium berghei strain ANKA]
gi|56492799|emb|CAH97912.1| ribonucleoprotein, putative [Plasmodium berghei]
Length = 194
Score = 39.3 bits (90), Expect = 0.34, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
++D R VGTFL DR N++L E+ ++KE N + R++GL+++ G +I
Sbjct: 19 ISDTRYYVGTFLSYDRHMNIVLVDAEEF---RRVKNKENNFKEIKRVVGLILIRGDNI 73
>gi|289742143|gb|ADD19819.1| small ribonucleoprotein particle protein B [Glossina morsitans
morsitans]
Length = 200
Score = 38.9 bits (89), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ D R +GTF D+ N+ILG C E+ +K +E R+LG V++ G++I
Sbjct: 21 LQDSRTFIGTFKAFDKHMNLILGDCEEFRKIRSKNAKVPE-REEKRVLGFVLLRGENI 77
>gi|116180816|ref|XP_001220257.1| hypothetical protein CHGG_01036 [Chaetomium globosum CBS 148.51]
gi|88185333|gb|EAQ92801.1| hypothetical protein CHGG_01036 [Chaetomium globosum CBS 148.51]
Length = 189
Score = 38.9 bits (89), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 2 TDGRVLVGTFLCTDRDANVILGSCGEYLSPE 32
TD R+ GTF+CTD ++N+IL EY P+
Sbjct: 30 TDSRMFWGTFVCTDHESNLILKHAYEYRHPD 60
>gi|156102224|ref|XP_001616805.1| small nuclear ribonucleoprotein associated protein B' [Plasmodium
vivax Sal-1]
gi|148805679|gb|EDL47078.1| small nuclear ribonucleoprotein associated protein B', putative
[Plasmodium vivax]
Length = 201
Score = 38.9 bits (89), Expect = 0.36, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
++D R VGTFL DR N++L E+ +S+E + + R++GL+++ G++I
Sbjct: 19 VSDTRYFVGTFLSYDRHMNIVLVDAEEFRK---VKSQENSSKEIKRVIGLILIRGENI 73
>gi|221060398|ref|XP_002260844.1| ribonucleoprotein [Plasmodium knowlesi strain H]
gi|193810918|emb|CAQ42816.1| ribonucleoprotein, putative [Plasmodium knowlesi strain H]
Length = 201
Score = 38.9 bits (89), Expect = 0.37, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
++D R VGTFL DR N++L E+ +S+E + + R++GL+++ G++I
Sbjct: 19 VSDTRYFVGTFLSYDRHMNIVLVDAEEF---RRVKSQENSSKEIKRVIGLILIRGENI 73
>gi|170040621|ref|XP_001848091.1| small nuclear ribonucleoprotein-associated protein B [Culex
quinquefasciatus]
gi|167864230|gb|EDS27613.1| small nuclear ribonucleoprotein-associated protein B [Culex
quinquefasciatus]
Length = 196
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEY--LSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ D R +GTF D+ N+ILG C E+ + P+ + E +E R+LG V++ G +I
Sbjct: 13 LQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKPKNTKLPER---EEKRVLGFVLLRGGNI 69
>gi|321262987|ref|XP_003196212.1| hypothetical Protein CGB_I3560W [Cryptococcus gattii WM276]
gi|317462687|gb|ADV24425.1| conserved hypothetical protein [Cryptococcus gattii WM276]
Length = 197
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENG-----AQEARLLGLVMVPG 55
+ DGR LVG L D+ N +L C E+ + + ++K + Q+ R LGLV++ G
Sbjct: 13 LNDGRSLVGQMLAYDKHMNFVLAECEEFRTVKAKKAKGSSSEPAPTTQQKRTLGLVILRG 72
Query: 56 QHI 58
+ I
Sbjct: 73 ETI 75
>gi|393911566|gb|EFO26903.2| hypothetical protein LOAG_01578 [Loa loa]
Length = 168
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ D R VG F D+ N++L C E + K+ +E R LGLV++ G+HI
Sbjct: 21 LLDSRTFVGYFKAFDKHMNILLCDCEELRRIKPKPGKKIAEGEEKRTLGLVLLRGEHI 78
>gi|170593211|ref|XP_001901358.1| small nuclear ribonucleoprotein-associated protein homolog
F9F13.90 - Arabidopsis thaliana [Brugia malayi]
gi|158591425|gb|EDP30038.1| small nuclear ribonucleoprotein-associated protein homolog
F9F13.90 - Arabidopsis thaliana, putative [Brugia
malayi]
Length = 168
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ D R VG F D+ N++L C E + K+ +E R LGLV++ G+HI
Sbjct: 21 LLDSRTFVGYFKAFDKHMNILLCDCEELRRIKPKPGKKIAEGEEKRTLGLVLLRGEHI 78
>gi|389593505|ref|XP_003722006.1| putative small nuclear ribonucleoprotein [Leishmania major strain
Friedlin]
gi|321438508|emb|CBZ12267.1| putative small nuclear ribonucleoprotein [Leishmania major strain
Friedlin]
Length = 111
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR + G L D+ NV+LG E P+ + EE G R LGL+++ G+H+
Sbjct: 18 LDDGRTVTGKLLVFDKHMNVVLGDAVEE-RPQSKKMAEE-GVSSKRQLGLILLRGEHV 73
>gi|409040887|gb|EKM50373.1| hypothetical protein PHACADRAFT_104351 [Phanerochaete carnosa
HHB-10118-sp]
Length = 105
Score = 38.5 bits (88), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEY--LSPEVFESKEENG-AQE-ARLLGLVMVPGQ 56
+ DGR VG L DR N++L C E+ + P+ + E G AQE R LGLV++ G+
Sbjct: 13 VNDGRAFVGQMLAFDRHMNLVLAECEEFRRVRPKKKSGETEAGPAQEMKRTLGLVILRGE 72
Query: 57 HI 58
+
Sbjct: 73 TV 74
>gi|384247810|gb|EIE21296.1| hypothetical protein COCSUDRAFT_83520 [Coccomyxa subellipsoidea
C-169]
Length = 270
Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEY--LSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ D R +VG F+ DR N++LG E+ L P+ ++EE + R+LGLV++ G +
Sbjct: 21 LIDSRHIVGRFMAFDRHMNLVLGDAEEFRKLPPKKGRTEEER--DQRRVLGLVLLRGDEV 78
>gi|312068333|ref|XP_003137165.1| hypothetical protein LOAG_01578 [Loa loa]
Length = 152
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ D R VG F D+ N++L C E + K+ +E R LGLV++ G+HI
Sbjct: 5 LLDSRTFVGYFKAFDKHMNILLCDCEELRRIKPKPGKKIAEGEEKRTLGLVLLRGEHI 62
>gi|50285713|ref|XP_445285.1| hypothetical protein [Candida glabrata CBS 138]
gi|49524589|emb|CAG58191.1| unnamed protein product [Candida glabrata]
Length = 165
Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 8/64 (12%)
Query: 3 DGRVLVGTFLCTDRDANVILGSCGE--YLSPEVFESK------EENGAQEARLLGLVMVP 54
DGRV +G L D+ NV+L C E L ++ + K +N E R+LGLV++
Sbjct: 26 DGRVYIGILLAFDKHMNVVLSDCVEERVLKKQIDDIKNKGSVDRDNLKVEKRVLGLVILR 85
Query: 55 GQHI 58
G+ I
Sbjct: 86 GEQI 89
>gi|22328770|ref|NP_680719.1| Small nuclear ribonucleoprotein family protein [Arabidopsis
thaliana]
gi|332658634|gb|AEE84034.1| Small nuclear ribonucleoprotein family protein [Arabidopsis
thaliana]
Length = 112
Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPG 55
+ DGR +G F C D+ N+IL EY S + E R LG++++P
Sbjct: 39 IKDGRFFLGNFHCIDKQGNIILQDTVEYRSIR----RSSPSPTEQRCLGMILIPS 89
>gi|302760253|ref|XP_002963549.1| hypothetical protein SELMODRAFT_80458 [Selaginella
moellendorffii]
gi|300168817|gb|EFJ35420.1| hypothetical protein SELMODRAFT_80458 [Selaginella
moellendorffii]
Length = 96
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 9/54 (16%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVP 54
+ DGR+ VG F C D+ N+IL + E ++ G E+R LGLV++P
Sbjct: 29 VADGRIFVGKFHCLDKQGNIIL--------YDTLEQRQGAGT-ESRSLGLVLIP 73
>gi|156045902|ref|XP_001589506.1| hypothetical protein SS1G_09227 [Sclerotinia sclerotiorum 1980]
gi|154693623|gb|EDN93361.1| hypothetical protein SS1G_09227 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 166
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 33/77 (42%), Gaps = 20/77 (25%)
Query: 2 TDGRVLVGTFLCTDRDANVILGSCGEY---------------LSPEVFESKEENGAQE-- 44
TD R+ G+F CTD D N+IL EY S + N +
Sbjct: 42 TDNRMFRGSFKCTDSDLNIILSETYEYRIPPCPPSSSIPQPPSSTSTSPTSSANPSTSIL 101
Query: 45 ---ARLLGLVMVPGQHI 58
R LGLV+VPG+HI
Sbjct: 102 NITPRWLGLVVVPGKHI 118
>gi|388855045|emb|CCF51372.1| uncharacterized protein [Ustilago hordei]
Length = 123
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 7/56 (12%)
Query: 3 DGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
DGR GT LC D N+IL + E + G R +G+VM+PG ++
Sbjct: 31 DGRAFCGTLLCIDSGCNIILANTDETRT-------TAQGRTSTRNVGMVMIPGNYV 79
>gi|357123414|ref|XP_003563405.1| PREDICTED: LSM domain-containing protein 1-like [Brachypodium
distachyon]
Length = 123
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPG 55
+ DGR +G F C D+ N+IL EY S + E R LGL+++P
Sbjct: 50 VNDGRYFLGLFHCIDKQGNIILQDAVEYRSAR----HSPSPPTEQRCLGLILIPA 100
>gi|367019744|ref|XP_003659157.1| hypothetical protein MYCTH_2295851 [Myceliophthora thermophila ATCC
42464]
gi|347006424|gb|AEO53912.1| hypothetical protein MYCTH_2295851 [Myceliophthora thermophila ATCC
42464]
Length = 171
Score = 38.5 bits (88), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 26/83 (31%)
Query: 2 TDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQE----------------- 44
TD R+ GTF CTD ++N+IL EY P + + A
Sbjct: 38 TDSRMFWGTFKCTDPESNIILQHTYEYRYPSARQVSDAAAAAAASAAGSGDEGGGGQGKD 97
Query: 45 ---------ARLLGLVMVPGQHI 58
+R LGLV++PG++I
Sbjct: 98 KAKVKLDMTSRYLGLVVIPGKYI 120
>gi|38566550|gb|AAR24165.1| At4g18372 [Arabidopsis thaliana]
gi|40823882|gb|AAR92310.1| At4g18372 [Arabidopsis thaliana]
Length = 78
Score = 38.5 bits (88), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPG 55
+ DGR +G F C D+ N+IL EY S + E R LG++++P
Sbjct: 5 IKDGRFFLGNFHCIDKQGNIILQDTVEYRSIR----RSSPSPTEQRCLGMILIPS 55
>gi|242208304|ref|XP_002470003.1| predicted protein [Postia placenta Mad-698-R]
gi|220730903|gb|EED84753.1| predicted protein [Postia placenta Mad-698-R]
Length = 383
Score = 38.1 bits (87), Expect = 0.59, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 6/53 (11%)
Query: 3 DGRVLVGTFLCTDRDANVILGSCGEY-LSPEVFESKEENGAQEARLLGLVMVP 54
DGR+ +GTF+ TD+ N++L + EY + PE + G R +G +MVP
Sbjct: 41 DGRIFLGTFVGTDQQLNILLVNSEEYRIGPESVD-----GDPNGRFVGQLMVP 88
>gi|242206398|ref|XP_002469055.1| predicted protein [Postia placenta Mad-698-R]
gi|220731920|gb|EED85760.1| predicted protein [Postia placenta Mad-698-R]
Length = 204
Score = 38.1 bits (87), Expect = 0.60, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 6/53 (11%)
Query: 3 DGRVLVGTFLCTDRDANVILGSCGEY-LSPEVFESKEENGAQEARLLGLVMVP 54
DGR+ +GTF+ TD+ N++L + EY + PE + G R +G +MVP
Sbjct: 41 DGRIFLGTFVGTDQQLNILLVNSEEYRIGPESVD-----GDPNGRFVGQLMVP 88
>gi|383852431|ref|XP_003701731.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B-like [Megachile rotundata]
Length = 219
Score = 38.1 bits (87), Expect = 0.61, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ D R +GTF D+ N+ILG C E+ + +K+ ++ R+LG V++ G++I
Sbjct: 23 LQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKPKNTKQPE-REDKRVLGFVLLRGENI 79
>gi|340712457|ref|XP_003394776.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B-like isoform 1 [Bombus terrestris]
gi|340712459|ref|XP_003394777.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B-like isoform 2 [Bombus terrestris]
gi|350399783|ref|XP_003485637.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B-like isoform 1 [Bombus impatiens]
gi|350399786|ref|XP_003485638.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B-like isoform 2 [Bombus impatiens]
Length = 217
Score = 38.1 bits (87), Expect = 0.61, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ D R +GTF D+ N+ILG C E+ + +K+ ++ R+LG V++ G++I
Sbjct: 21 LQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKPKNTKQPE-REDKRVLGFVLLRGENI 77
>gi|297725409|ref|NP_001175068.1| Os07g0166600 [Oryza sativa Japonica Group]
gi|255677541|dbj|BAH93796.1| Os07g0166600 [Oryza sativa Japonica Group]
Length = 261
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQE 44
+ DGR LVG F+ DR N++LG C E+ +S + G +E
Sbjct: 21 IQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPSKSSKTTGERE 64
>gi|170105048|ref|XP_001883737.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164641372|gb|EDR05633.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 103
Score = 38.1 bits (87), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEY--LSPEVFESKEENGAQE-ARLLGLVMVPGQH 57
+ DGR L G L DR N++L C E+ + P+ +E QE R LGLV++ G+
Sbjct: 13 INDGRALTGQMLAFDRHMNLVLADCEEFRRVRPKKKAGEETAPEQEMKRTLGLVILRGET 72
Query: 58 I 58
+
Sbjct: 73 V 73
>gi|409074536|gb|EKM74931.1| hypothetical protein AGABI1DRAFT_132707 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426192170|gb|EKV42108.1| hypothetical protein AGABI2DRAFT_123228 [Agaricus bisporus var.
bisporus H97]
Length = 93
Score = 38.1 bits (87), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 2 TDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
TD R+L+GTF TD+ N+I+ + EY + E+ + R + LVMVP + I
Sbjct: 22 TDNRILIGTFAGTDKPLNIIITNAEEYR----IDGSEQ--LPQGRYVSLVMVPWKLI 72
>gi|239787841|ref|NP_001155181.1| small ribonucleoprotein particle protein B [Apis mellifera]
Length = 217
Score = 38.1 bits (87), Expect = 0.66, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ D R +GTF D+ N+ILG C E+ + +K+ ++ R+LG V++ G++I
Sbjct: 21 LQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKPKNTKQPE-REDKRVLGFVLLRGENI 77
>gi|156088647|ref|XP_001611730.1| Sm domain containing protein [Babesia bovis]
gi|154798984|gb|EDO08162.1| Sm domain containing protein [Babesia bovis]
Length = 159
Score = 38.1 bits (87), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESK--EENGAQEARLLGLVMVPGQHI 58
+ DGR VGTF+ D+ N++L C E+ + + K ++ + R LG +M+ G++I
Sbjct: 20 IKDGRKFVGTFIAFDKHMNLVLADCEEF---RITKGKGPDKQKVELKRTLGFIMLRGENI 76
>gi|302832758|ref|XP_002947943.1| hypothetical protein VOLCADRAFT_116657 [Volvox carteri f.
nagariensis]
gi|300266745|gb|EFJ50931.1| hypothetical protein VOLCADRAFT_116657 [Volvox carteri f.
nagariensis]
Length = 107
Score = 38.1 bits (87), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 8/54 (14%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVP 54
+ GRVL G F C DR N+IL + FE +E R +GLV+VP
Sbjct: 26 LVSGRVLEGDFTCLDRQGNIILSNT--------FEQVTTAPGREGRHMGLVLVP 71
>gi|134076427|emb|CAK39655.1| unnamed protein product [Aspergillus niger]
Length = 275
Score = 38.1 bits (87), Expect = 0.69, Method: Composition-based stats.
Identities = 17/30 (56%), Positives = 19/30 (63%)
Query: 2 TDGRVLVGTFLCTDRDANVILGSCGEYLSP 31
TD R+ VGTF CTD N+IL S EY P
Sbjct: 23 TDTRIFVGTFKCTDAARNIILASTYEYRFP 52
>gi|226496711|ref|NP_001140478.1| uncharacterized protein LOC100272538 [Zea mays]
gi|194699658|gb|ACF83913.1| unknown [Zea mays]
gi|195606200|gb|ACG24930.1| small nuclear ribonucleoprotein-associated protein B [Zea mays]
gi|414592013|tpg|DAA42584.1| TPA: Small nuclear ribonucleoprotein-associated protein B [Zea
mays]
Length = 263
Score = 38.1 bits (87), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQE 44
+ DGR LVG F+ DR N++LG C E+ +S + G +E
Sbjct: 21 IQDGRQLVGKFMAFDRHMNLVLGDCEEFRRLPPSKSSKATGERE 64
>gi|389739317|gb|EIM80511.1| Sm-like ribonucleo protein [Stereum hirsutum FP-91666 SS1]
Length = 179
Score = 38.1 bits (87), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEY--LSPEVFESKEENGAQE--ARLLGLVMVPGQ 56
+ DGR L G L DR N++L C E+ + P+ + E G ++ R LGLV++ G+
Sbjct: 23 INDGRALTGQMLAFDRHMNLVLAECEEFRRVRPKKKAGEAEAGPEQEMKRTLGLVILRGE 82
Query: 57 HI 58
+
Sbjct: 83 TV 84
>gi|168011312|ref|XP_001758347.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690382|gb|EDQ76749.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 152
Score = 38.1 bits (87), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGE--YLSPEVFESKEEN 40
+ DGR LVG F+ DR N++LG C E + P+ +S+EE
Sbjct: 21 IQDGRQLVGKFMAFDRHMNLVLGDCEELRRVPPKKGKSQEEK 62
>gi|414883666|tpg|DAA59680.1| TPA: small nuclear ribonucleoprotein-associated protein B [Zea
mays]
Length = 263
Score = 38.1 bits (87), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQE 44
+ DGR LVG F+ DR N++LG C E+ +S + G +E
Sbjct: 21 IQDGRQLVGKFMAFDRHMNLVLGDCEEFRRLPPSKSSKTTGERE 64
>gi|326521412|dbj|BAJ96909.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 264
Score = 38.1 bits (87), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQE 44
+ DGR LVG F+ DR N++LG C E+ +S + G +E
Sbjct: 21 IQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPSKSSKTTGERE 64
>gi|146091079|ref|XP_001466437.1| putative small nuclear ribonucleoprotein protein [Leishmania
infantum JPCM5]
gi|398017706|ref|XP_003862040.1| small nuclear ribonucleoprotein protein, putative [Leishmania
donovani]
gi|134070799|emb|CAM69157.1| putative small nuclear ribonucleoprotein protein [Leishmania
infantum JPCM5]
gi|322500268|emb|CBZ35346.1| small nuclear ribonucleoprotein protein, putative [Leishmania
donovani]
Length = 111
Score = 37.7 bits (86), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR + G L D+ NV+LG E P+ + EE G R LGL+++ G+H+
Sbjct: 18 LDDGRTVTGKLLVFDKHMNVVLGDAVEE-RPQSKKMAEE-GVSPKRQLGLILLRGEHV 73
>gi|226492272|ref|NP_001148524.1| small nuclear ribonucleoprotein-associated protein B [Zea mays]
gi|195620004|gb|ACG31832.1| small nuclear ribonucleoprotein-associated protein B [Zea mays]
Length = 263
Score = 37.7 bits (86), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQE 44
+ DGR LVG F+ DR N++LG C E+ +S + G +E
Sbjct: 21 IQDGRQLVGKFMAFDRHMNLVLGDCEEFRRLPPSKSSKTTGERE 64
>gi|124808462|ref|XP_001348319.1| ribonucleoprotein, putative [Plasmodium falciparum 3D7]
gi|23497211|gb|AAN36758.1|AE014818_23 ribonucleoprotein, putative [Plasmodium falciparum 3D7]
Length = 201
Score = 37.7 bits (86), Expect = 0.78, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
++D R VGTFL DR N++L E+ +S+E + + R++GL+++ G++I
Sbjct: 19 ISDTRYFVGTFLSYDRHMNIVLVDAEEFRK---VKSQENSLKEIKRVVGLILIRGENI 73
>gi|154340018|ref|XP_001565966.1| putative small nuclear ribonucleoprotein protein [Leishmania
braziliensis MHOM/BR/75/M2904]
gi|134063284|emb|CAM45490.1| putative small nuclear ribonucleoprotein protein [Leishmania
braziliensis MHOM/BR/75/M2904]
Length = 110
Score = 37.7 bits (86), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR + G L D+ NV+LG E P+ EE G R LGL+++ G+H+
Sbjct: 18 LDDGRSVTGKLLVFDKHMNVVLGDAVEE-RPQSKRMAEE-GVSSKRQLGLILLRGEHV 73
>gi|281200299|gb|EFA74520.1| putative small nuclear ribonucleoparticle-associated protein
[Polysphondylium pallidum PN500]
Length = 250
Score = 37.7 bits (86), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGRV+VG FL D+ NV++ E+ + K + +E R LG+V++ G+ +
Sbjct: 21 IQDGRVIVGRFLAFDKHMNVVICDAEEFRR---IKQKGKEDREEKRTLGMVLIRGETV 75
>gi|403221959|dbj|BAM40091.1| small nuclear ribonucleoprotein associated protein b [Theileria
orientalis strain Shintoku]
Length = 153
Score = 37.7 bits (86), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ D R VGT + DR N++L C E+ + K++N + R LG V++ G++I
Sbjct: 20 LKDNRKFVGTLVAFDRHMNLVLSDCEEF---RMTLGKDKNRTEIKRTLGFVLLRGENI 74
>gi|242043028|ref|XP_002459385.1| hypothetical protein SORBIDRAFT_02g003850 [Sorghum bicolor]
gi|241922762|gb|EER95906.1| hypothetical protein SORBIDRAFT_02g003850 [Sorghum bicolor]
Length = 262
Score = 37.7 bits (86), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 3 DGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQE 44
DGR LVG F+ DR N++LG C E+ +S + G +E
Sbjct: 23 DGRQLVGKFMAFDRHMNLVLGDCEEFRRLPPSKSSKTTGDRE 64
>gi|66823569|ref|XP_645139.1| hypothetical protein DDB_G0272320 [Dictyostelium discoideum AX4]
gi|74857874|sp|Q55A45.1|RSMB_DICDI RecName: Full=Small nuclear ribonucleoprotein-associated protein
B; Short=snRNP-B; AltName: Full=Sm protein B;
Short=Sm-B; Short=SmB
gi|60473366|gb|EAL71312.1| hypothetical protein DDB_G0272320 [Dictyostelium discoideum AX4]
Length = 274
Score = 37.7 bits (86), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGRV+VG FL D+ NV++ E+ K + +E R LG++++ G+ +
Sbjct: 22 IQDGRVIVGRFLAFDKHMNVVICDAEEFRR---IRQKGKEDREEKRTLGMILIRGETV 76
>gi|392596958|gb|EIW86280.1| hypothetical protein CONPUDRAFT_148373 [Coniophora puteana
RWD-64-598 SS2]
Length = 106
Score = 37.7 bits (86), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 2 TDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+DGRV +GTF+ TD+ NV+L + EY N R +G VM+P + I
Sbjct: 27 SDGRVFIGTFVGTDQLLNVLLVNTEEYRV-----HPTANANPNGRFVGQVMIPWRLI 78
>gi|58260056|ref|XP_567438.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|134116264|ref|XP_773086.1| hypothetical protein CNBJ0810 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50255707|gb|EAL18439.1| hypothetical protein CNBJ0810 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229488|gb|AAW45921.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 195
Score = 37.7 bits (86), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENG-----AQEARLLGLVMVPG 55
+ DGR LVG L D+ N +L C E+ + + ++K + Q+ R LGLV++ G
Sbjct: 13 LNDGRSLVGQMLAYDKHMNFVLAECEEFRTVKGKKAKASSNEPAPTTQQKRTLGLVILRG 72
Query: 56 QHI 58
+ I
Sbjct: 73 ETI 75
>gi|303390224|ref|XP_003073343.1| U6 snRNA-associated Sm-like protein [Encephalitozoon intestinalis
ATCC 50506]
gi|303302489|gb|ADM11983.1| U6 snRNA-associated Sm-like protein [Encephalitozoon intestinalis
ATCC 50506]
Length = 88
Score = 37.7 bits (86), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 10/60 (16%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQE--ARLLGLVMVPGQHI 58
M DGR + GT L D D NV+L E+ + G++E R+LGLVM G +
Sbjct: 17 MKDGRWMEGTMLSVDEDVNVVLDDSEEF--------RNARGSKEPRRRVLGLVMARGDFV 68
>gi|402223834|gb|EJU03898.1| Sm-like ribonucleo protein [Dacryopinax sp. DJM-731 SS1]
Length = 120
Score = 37.7 bits (86), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENG------AQE-ARLLGLVMV 53
+ DGR L G L DR N++L C E+ E +G AQE R LGLV++
Sbjct: 23 LNDGRELTGQMLAFDRHMNLVLADCEEFRKTRSKTKGESDGPAAVSMAQEIKRTLGLVIL 82
Query: 54 PGQHI 58
G+ I
Sbjct: 83 RGETI 87
>gi|294901095|ref|XP_002777232.1| small nuclear ribonucleoprotein, putative [Perkinsus marinus ATCC
50983]
gi|239884763|gb|EER09048.1| small nuclear ribonucleoprotein, putative [Perkinsus marinus ATCC
50983]
Length = 171
Score = 37.7 bits (86), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 7/62 (11%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQE----ARLLGLVMVPGQ 56
+ DGR+++G F+ D+ N++L E+ SK E+G E R+LGL+++ G+
Sbjct: 22 LHDGRIMIGQFMAFDKHMNLVLADTEEFRK---VRSKGESGLGEEREVKRMLGLLILRGE 78
Query: 57 HI 58
+I
Sbjct: 79 NI 80
>gi|294885961|ref|XP_002771488.1| small nuclear ribonucleoprotein, putative [Perkinsus marinus ATCC
50983]
gi|239875192|gb|EER03304.1| small nuclear ribonucleoprotein, putative [Perkinsus marinus ATCC
50983]
Length = 171
Score = 37.7 bits (86), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 7/62 (11%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQE----ARLLGLVMVPGQ 56
+ DGR+++G F+ D+ N++L E+ SK E+G E R+LGL+++ G+
Sbjct: 22 LHDGRIMIGQFMAFDKHMNLVLADTEEFRK---VRSKGESGLGEEREVKRMLGLLILRGE 78
Query: 57 HI 58
+I
Sbjct: 79 NI 80
>gi|226493100|ref|NP_001147152.1| sm protein [Zea mays]
gi|195607764|gb|ACG25712.1| sm protein [Zea mays]
gi|195627350|gb|ACG35505.1| sm protein [Zea mays]
gi|413943367|gb|AFW76016.1| sm protein isoform 1 [Zea mays]
gi|413943368|gb|AFW76017.1| sm protein isoform 2 [Zea mays]
Length = 120
Score = 37.4 bits (85), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPG 55
+ DGR G F C D+ N+IL EY S ++ + E R LGL+++P
Sbjct: 49 VNDGRYFHGLFHCIDKQGNIILQDAVEYRS-----ARHCSPPTEQRCLGLILIPA 98
>gi|409081623|gb|EKM81982.1| hypothetical protein AGABI1DRAFT_112159 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426196857|gb|EKV46785.1| hypothetical protein AGABI2DRAFT_136942 [Agaricus bisporus var.
bisporus H97]
Length = 178
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEY--LSPEVFESKEENGAQE-ARLLGLVMVPGQH 57
+ DGR L G L DR N++L C E+ + P+ +E QE R LGLV++ G+
Sbjct: 23 INDGRALTGQMLAFDRHMNLVLADCEEFRRVRPKKKAGEETAPEQEMKRTLGLVILRGET 82
Query: 58 I 58
+
Sbjct: 83 V 83
>gi|294872496|ref|XP_002766300.1| small nuclear ribonucleoprotein, putative [Perkinsus marinus ATCC
50983]
gi|239867057|gb|EEQ99017.1| small nuclear ribonucleoprotein, putative [Perkinsus marinus ATCC
50983]
Length = 172
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 7/62 (11%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQE----ARLLGLVMVPGQ 56
+ DGR+++G F+ D+ N++L E+ SK E+G E R+LGL+++ G+
Sbjct: 22 LHDGRIMIGQFMAFDKHMNLVLADTEEFRK---VRSKGESGLGEEREVKRMLGLLILRGE 78
Query: 57 HI 58
+I
Sbjct: 79 NI 80
>gi|158294309|ref|XP_315523.4| AGAP005523-PA [Anopheles gambiae str. PEST]
gi|157015505|gb|EAA11463.4| AGAP005523-PA [Anopheles gambiae str. PEST]
Length = 202
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEY--LSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ D R +GTF D+ N+ILG C E+ + P+ + E +E R+LG V++ G +I
Sbjct: 21 LQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKPKNTKLPER---EEKRVLGFVLLRGGNI 77
>gi|429327489|gb|AFZ79249.1| small nuclear ribonucleoprotein-associated protein B, putative
[Babesia equi]
Length = 153
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 3 DGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
DGR VGT + D+ N++L C E+ +K + G + R LG +++ G++I
Sbjct: 22 DGRKFVGTLIAFDKHMNLVLADCEEFRM-----TKGKEGKEIKRTLGFILLRGENI 72
>gi|395326390|gb|EJF58800.1| hypothetical protein DICSQDRAFT_109646 [Dichomitus squalens
LYAD-421 SS1]
Length = 108
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEY-LSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+TDGRV +GTF TD+ N++L + EY L P+ + + R +G VM+P + +
Sbjct: 28 VTDGRVFLGTFAGTDKQLNILLINTDEYRLGPDA-----GSDGLDGRYVGQVMIPWRLV 81
>gi|328860396|gb|EGG09502.1| hypothetical protein MELLADRAFT_34386 [Melampsora larici-populina
98AG31]
Length = 100
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKE 38
+ DGRV G F+CTD+ N++L EY P+ +++E
Sbjct: 27 IVDGRVFTGNFICTDQRCNIVLDHAIEY-QPKTNQTRE 63
>gi|452824595|gb|EME31597.1| small nuclear ribonucleoprotein B and B' [Galdieria sulphuraria]
Length = 214
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ D RV+VG L D+ N++L C E F ++ +E R LGLV++ G+ +
Sbjct: 21 LDDQRVIVGQLLAFDKHLNLVLNDCEE------FRKLKKQDKEEKRALGLVLLRGESV 72
>gi|440586625|emb|CCK33034.1| RNA-binding protein SmB [Platynereis dumerilii]
Length = 204
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+ILG C E+ ++ K + +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILGDCDEFR--KIKPKKAKEEREEKRVLGLVLLRGENL 76
>gi|328773803|gb|EGF83840.1| hypothetical protein BATDEDRAFT_8283, partial [Batrachochytrium
dendrobatidis JAM81]
Length = 213
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEY--LSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR +G L D+ N++L C E+ + P ++K + +E R LGLV++ G+ I
Sbjct: 20 IQDGRTFIGQMLAFDKHMNLVLSECEEFRKIRP---KTKSQQEREEKRSLGLVILRGETI 76
>gi|384483289|gb|EIE75469.1| hypothetical protein RO3G_00173 [Rhizopus delemar RA 99-880]
Length = 202
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQE---ARLLGLVMVPGQH 57
M+D RVL G L D+ N++L C E+ +V + N E R LGLV++ G+
Sbjct: 21 MSDSRVLTGQMLAFDKHMNLVLADCEEFR--KVKSKAKSNNPTEQEMKRTLGLVILRGET 78
Query: 58 I 58
I
Sbjct: 79 I 79
>gi|396081855|gb|AFN83469.1| U6 snRNA-associated Sm-like protein [Encephalitozoon romaleae
SJ-2008]
Length = 79
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 10/60 (16%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEA--RLLGLVMVPGQHI 58
M DGR + GT L D D N +L E+ ++ G++EA R+LGLV++ G I
Sbjct: 17 MRDGRWMEGTMLAVDGDTNAVLDDTEEF--------RKIKGSKEARRRILGLVVIRGDFI 68
>gi|395331807|gb|EJF64187.1| Sm-like ribonucleo protein [Dichomitus squalens LYAD-421 SS1]
Length = 181
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEY--LSPEVFESKEENGAQE--ARLLGLVMVPGQ 56
+ DGR VG L DR N++L C E+ + P+ + E G + R LGLV++ G+
Sbjct: 23 INDGRAFVGQMLAFDRHMNLVLAECEEFRRVRPKKKPGETEAGPMQEMKRTLGLVILRGE 82
Query: 57 HI 58
+
Sbjct: 83 TV 84
>gi|168007482|ref|XP_001756437.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692476|gb|EDQ78833.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 86
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 3 DGRVLVGTFLCTDRDANVILGSCGEYL----SPEVFESKEENGAQ--EARLLGLVMVPGQ 56
DGR+ VG F C D+ N+IL E+ S EV ++ G E R LGLV++P +
Sbjct: 7 DGRIFVGKFHCLDKQGNIILYDTVEFRNVPSSGEVRAEEDVGGGAPVEQRSLGLVLIPAR 66
>gi|242096720|ref|XP_002438850.1| hypothetical protein SORBIDRAFT_10g027190 [Sorghum bicolor]
gi|241917073|gb|EER90217.1| hypothetical protein SORBIDRAFT_10g027190 [Sorghum bicolor]
Length = 126
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPG 55
+ DGR G F C D+ N+IL EY S ++ + E R LGL+++P
Sbjct: 54 VNDGRYFHGLFHCIDKQGNIILQDAVEYRS----AARHCSPPTEQRCLGLILIPA 104
>gi|302673926|ref|XP_003026649.1| hypothetical protein SCHCODRAFT_44183 [Schizophyllum commune
H4-8]
gi|300100332|gb|EFI91746.1| hypothetical protein SCHCODRAFT_44183 [Schizophyllum commune
H4-8]
Length = 89
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENG---AQEARLLGLVMVPGQH 57
+TDGRV +G F TD+ N++L + EY + + + G + R +G +M+P +
Sbjct: 23 VTDGRVFLGQFAGTDKPLNILLVNAEEYRAQKTTGDNAQIGQPPQYDGRFVGQIMIPWKI 82
Query: 58 I 58
I
Sbjct: 83 I 83
>gi|367013764|ref|XP_003681382.1| hypothetical protein TDEL_0D05870 [Torulaspora delbrueckii]
gi|359749042|emb|CCE92171.1| hypothetical protein TDEL_0D05870 [Torulaspora delbrueckii]
Length = 172
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 3 DGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESK-EENGAQEA-----RLLGLVMVPGQ 56
DGRV +G + D+ NV+L +C E P K +N A +A R+LGL ++ G+
Sbjct: 26 DGRVYIGELMAFDKHMNVVLKNCVEERVPRTQMDKLRKNLADQAVKVEKRVLGLTILRGE 85
Query: 57 HI 58
I
Sbjct: 86 QI 87
>gi|50303233|ref|XP_451558.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49640690|emb|CAH01951.1| KLLA0B00627p [Kluyveromyces lactis]
Length = 191
Score = 37.0 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
Query: 3 DGRVLVGTFLCTDRDANVILGSCGEYLSP-----EVFESK---EENGAQEARLLGLVMVP 54
DGRV +G + D N+++G C E P EV +S N E R GL+++
Sbjct: 27 DGRVYIGQLMAFDAYMNLVMGDCVEERMPHKQIIEVLKSGGNLSSNVQVERRTFGLIILR 86
Query: 55 GQHI 58
G+H+
Sbjct: 87 GEHV 90
>gi|392565532|gb|EIW58709.1| Sm-like ribonucleo protein [Trametes versicolor FP-101664 SS1]
Length = 178
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEY--LSPEVFESKEENGAQE--ARLLGLVMVPGQ 56
+ DGR VG L DR N++L C E+ + P+ + E G + R LGLV++ G+
Sbjct: 23 INDGRAFVGQMLAFDRHMNLVLAECEEFRRVRPKKKAGETEAGPMQEMKRTLGLVILRGE 82
Query: 57 HI 58
+
Sbjct: 83 TV 84
>gi|384492952|gb|EIE83443.1| hypothetical protein RO3G_08148 [Rhizopus delemar RA 99-880]
Length = 174
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQE-ARLLGLVMVPGQHI 58
M+D RVL G L D+ N++L C E+ + QE R LGL+++ G+ I
Sbjct: 21 MSDSRVLTGQMLAFDKHMNLVLADCEEFRKVKSKAKSNNTTEQEMKRTLGLIILRGETI 79
>gi|449547896|gb|EMD38863.1| hypothetical protein CERSUDRAFT_112585 [Ceriporiopsis
subvermispora B]
Length = 184
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 10/65 (15%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEA-------RLLGLVMV 53
+ DGR VG L DR N++L C E+ K++ G EA R LGLV++
Sbjct: 23 INDGRAFVGQMLAFDRHMNLVLAECEEF---RRIRPKKKPGETEAGPVQEMKRTLGLVIL 79
Query: 54 PGQHI 58
G+ +
Sbjct: 80 RGETV 84
>gi|85116379|ref|XP_965044.1| hypothetical protein NCU07497 [Neurospora crassa OR74A]
gi|28926845|gb|EAA35808.1| predicted protein [Neurospora crassa OR74A]
Length = 178
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSP 31
+TDGR+ G F C D ++N+IL S EY P
Sbjct: 33 VTDGRMFWGQFKCVDAESNIILHSAYEYRFP 63
>gi|449550420|gb|EMD41384.1| hypothetical protein CERSUDRAFT_128121 [Ceriporiopsis
subvermispora B]
Length = 112
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ VGTF TD+ N++L + EY + E R +G +MVP + I
Sbjct: 32 INDGRIFVGTFAGTDKQLNILLVNADEYR----IGGERLYVNSEGRFVGQIMVPWRLI 85
>gi|443924956|gb|ELU43898.1| LSM domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 183
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQE-ARLLGLVMVPGQHI 58
+ DGR L G L D+ N++L C E+ + +S + QE R LGL+++ G+ +
Sbjct: 24 LNDGRALTGQMLAFDKHMNLVLADCEEFRRVKSKKSDQGGVEQELKRTLGLIILRGETV 82
>gi|219117519|ref|XP_002179554.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217409445|gb|EEC49377.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 165
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 11/64 (17%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGA------QEARLLGLVMVP 54
+ DGR +VGTFL D+ N++L E+ + K + GA E R LGLV++
Sbjct: 21 LHDGRSIVGTFLAFDKHLNLVLSEAEEFRT-----LKSKGGAALLEERTEKRSLGLVLIR 75
Query: 55 GQHI 58
G+++
Sbjct: 76 GENV 79
>gi|169849793|ref|XP_001831595.1| SMB [Coprinopsis cinerea okayama7#130]
gi|116507233|gb|EAU90128.1| SMB [Coprinopsis cinerea okayama7#130]
Length = 168
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEY--LSPEVFESKEENGAQE-ARLLGLVMVPGQH 57
+ DGR L G L DR N++L C E+ + P+ +E QE R LGLV++ G+
Sbjct: 13 IQDGRALTGQMLAFDRHMNLVLADCEEFRRVRPKKKAGEEVAPEQELKRTLGLVILRGEA 72
Query: 58 I 58
+
Sbjct: 73 V 73
>gi|19115063|ref|NP_594151.1| Sm snRNP core protein Smb1 [Schizosaccharomyces pombe 972h-]
gi|1723236|sp|Q10163.1|RSMB_SCHPO RecName: Full=Small nuclear ribonucleoprotein-associated protein
B; Short=snRNP-B; AltName: Full=Sm protein B;
Short=Sm-B; Short=SmB
gi|1177355|emb|CAA93231.1| Sm snRNP core protein Smb1 [Schizosaccharomyces pombe]
Length = 147
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 3 DGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
DGR VG L D N++L C EY + + +E R+LGLV++ G+ I
Sbjct: 20 DGRTFVGQLLAFDGFMNLVLSDCQEYRHIKKQNVPSNSVYEEKRMLGLVILRGEFI 75
>gi|168061084|ref|XP_001782521.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168061116|ref|XP_001782537.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168066445|ref|XP_001785148.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663270|gb|EDQ50044.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666006|gb|EDQ52673.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666022|gb|EDQ52689.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 145
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGE--YLSPEVFESKEEN 40
+ DGR LVG F+ DR N++LG C E + P+ +++EE
Sbjct: 21 IQDGRQLVGKFMAFDRHMNLVLGDCEELRRVPPKKGKTQEER 62
>gi|239790777|dbj|BAH71926.1| ACYPI006936 [Acyrthosiphon pisum]
Length = 209
Score = 36.6 bits (83), Expect = 2.1, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYL---SPEVFESKEENGAQEARLLGLVMVPGQH 57
+ D R+ +GTF D+ N+IL C E+ S + +E R+LG V++ GQ+
Sbjct: 21 LQDSRMFIGTFKAFDKHMNLILADCEEFRRLKSKAKVPTIPAEPREEKRVLGFVLLRGQN 80
Query: 58 I 58
I
Sbjct: 81 I 81
>gi|71030572|ref|XP_764928.1| small nuclear ribonucleoprotein B [Theileria parva strain Muguga]
gi|68351884|gb|EAN32645.1| small nuclear ribonucleoprotein B, putative [Theileria parva]
Length = 155
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ D R VGT + D+ N++L C E+ + K++N + R LG V++ G++I
Sbjct: 20 LKDNRKFVGTLVAYDKYMNLVLSDCEEF---RMTLGKDKNRTEVKRTLGFVLLRGENI 74
>gi|193704556|ref|XP_001950622.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B-like [Acyrthosiphon pisum]
Length = 209
Score = 36.2 bits (82), Expect = 2.2, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYL---SPEVFESKEENGAQEARLLGLVMVPGQH 57
+ D R+ +GTF D+ N+IL C E+ S + +E R+LG V++ GQ+
Sbjct: 21 LQDSRMFIGTFKAFDKHMNLILADCEEFRRLKSKAKVPTIPAEPREEKRVLGFVLLRGQN 80
Query: 58 I 58
I
Sbjct: 81 I 81
>gi|195385781|ref|XP_002051583.1| GJ16334 [Drosophila virilis]
gi|194148040|gb|EDW63738.1| GJ16334 [Drosophila virilis]
Length = 134
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 10/53 (18%)
Query: 6 VLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
VLVG F CTD D N+I+ +C ++ + E G V+VPG I
Sbjct: 60 VLVGIFSCTDHDQNLIIANCDTFMPDD----------HEPIAYGNVVVPGDQI 102
>gi|367001350|ref|XP_003685410.1| hypothetical protein TPHA_0D03410 [Tetrapisispora phaffii CBS
4417]
gi|357523708|emb|CCE62976.1| hypothetical protein TPHA_0D03410 [Tetrapisispora phaffii CBS
4417]
Length = 179
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 13/69 (18%)
Query: 3 DGRVLVGTFLCTDRDANVILGSC-GEYLSPEVFE-----------SKEENGAQ-EARLLG 49
DG++ +G + D+ NV+LG C E +S + + SKE N + E R+LG
Sbjct: 30 DGKLYLGELMAFDKHMNVVLGDCVEERISKQQLQKIIQNRGKQDTSKENNVIKTEKRVLG 89
Query: 50 LVMVPGQHI 58
LV++ G+ I
Sbjct: 90 LVILRGEQI 98
>gi|149621318|ref|XP_001518812.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Ornithorhynchus anatinus]
Length = 155
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 10/62 (16%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQE----ARLLGLVMVPGQ 56
+ DGR VGTF+ DR N++L C E F G +E R LG +++ G+
Sbjct: 20 IKDGRKFVGTFIAFDRHMNLVLADC------EEFRLTLNKGLKEPIEVKRTLGFILLRGE 73
Query: 57 HI 58
+I
Sbjct: 74 NI 75
>gi|342180037|emb|CCC89513.1| putative small nuclear ribonucleoprotein SmD1 [Trypanosoma
congolense IL3000]
Length = 109
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHIPA 60
+ DGR + G L DR NV+L E S + + ++ G R LGLV++ G+H+ A
Sbjct: 18 LVDGREMTGKMLVYDRCMNVVLADAVE--SRKETKKMKDAGISPQRKLGLVLLRGEHVVA 75
>gi|403360308|gb|EJY79824.1| Small nuclear ribonucleoprotein B' [Oxytricha trifallax]
gi|403374056|gb|EJY86961.1| Small nuclear ribonucleoprotein B' [Oxytricha trifallax]
Length = 198
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 5/55 (9%)
Query: 6 VLVGTFLCTDRDANVILGSCGEY--LSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+LVGTF+ D+ N++L EY + P+ E KE + R LGLV++ G++I
Sbjct: 1 MLVGTFIAFDKHMNLVLADTEEYRKIKPKRPEDKER---ELKRALGLVLLRGENI 52
>gi|84995270|ref|XP_952357.1| small nuclear ribonucleoprotein associated protein b [Theileria
annulata strain Ankara]
gi|65302518|emb|CAI74625.1| small nuclear ribonucleoprotein associated protein b, putative
[Theileria annulata]
Length = 155
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ D R VGT + D+ N++L C E+ + K++N + R LG V++ G++I
Sbjct: 20 LKDNRKFVGTLVAFDKYMNLVLSDCEEF---RMTLGKDKNRTEVKRTLGFVLLRGENI 74
>gi|403215079|emb|CCK69579.1| hypothetical protein KNAG_0C04780 [Kazachstania naganishii CBS
8797]
Length = 93
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+L G F+ D N++L E +SK +RLLGLV VP +
Sbjct: 18 LKDGRILNGEFMAIDAQCNLLLDRVRE-------QSKSATAEVSSRLLGLVSVPSDTV 68
>gi|328875018|gb|EGG23383.1| hypothetical protein DFA_05515 [Dictyostelium fasciculatum]
Length = 897
Score = 35.8 bits (81), Expect = 3.0, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR++VG FL D+ N+++ E+ + K + +E R LG++++ G+ +
Sbjct: 700 INDGRIIVGRFLAFDKHMNIVVCDAEEF---RRIKQKGKEDREEKRTLGMLVIRGETV 754
>gi|50550683|ref|XP_502814.1| YALI0D14102p [Yarrowia lipolytica]
gi|49648682|emb|CAG81002.1| YALI0D14102p [Yarrowia lipolytica CLIB122]
Length = 164
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 13/69 (18%)
Query: 3 DGRVLVGTFLCTDRDANVILGSCGEYLSPE--VFESKE----ENG-------AQEARLLG 49
DG+ +VG L DR N++L C E+ + + + E+K+ ENG +E R LG
Sbjct: 23 DGKQMVGQMLAFDRYMNLVLSDCEEFRATKKSLLEAKKTIQIENGDASSVSITEEKRTLG 82
Query: 50 LVMVPGQHI 58
LV++ G+ +
Sbjct: 83 LVILRGETV 91
>gi|401625161|gb|EJS43183.1| lsm1p [Saccharomyces arboricola H-6]
Length = 172
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+L G D+ AN+IL C E ++ S+E A+E R G+ M+ G+++
Sbjct: 58 LRDGRMLFGVLRTFDQYANLILQDCVE----RIYFSEENKYAEEER--GIFMIRGENV 109
>gi|393222057|gb|EJD07541.1| Sm-like ribonucleo protein [Fomitiporia mediterranea MF3/22]
Length = 183
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGA---QE-ARLLGLVMVPGQ 56
+ DGR L G L DR N++L C E+ + E G QE R LGLV++ G+
Sbjct: 23 LNDGRALTGQMLAFDRHMNLVLADCEEFRRVRAKKKAGEEGPAPEQEIKRSLGLVILRGE 82
Query: 57 HI 58
+
Sbjct: 83 SV 84
>gi|390596776|gb|EIN06177.1| Sm-like ribonucleo protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 158
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEY--LSPEVFESKEENG-AQE-ARLLGLVMVPGQ 56
+ DGR L G L DR N++L C E+ + P+ + E G QE R LGLV++ G+
Sbjct: 13 INDGRALTGQMLAFDRHMNLVLAECEEFRRVRPKKKPGETEAGPVQEMKRSLGLVILRGE 72
Query: 57 HI 58
+
Sbjct: 73 TV 74
>gi|308505924|ref|XP_003115145.1| CRE-SNR-2 protein [Caenorhabditis remanei]
gi|308259327|gb|EFP03280.1| CRE-SNR-2 protein [Caenorhabditis remanei]
Length = 178
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 18/76 (23%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKE------------------ENGA 42
+ DGR VG F D+ N++L C E+ + K+ +
Sbjct: 21 LQDGRTFVGFFKAFDKHMNILLAECEEHRQIKPKAGKKVCCYFFIVQGSILIIDCFQADG 80
Query: 43 QEARLLGLVMVPGQHI 58
+E R+LGLV++ G+HI
Sbjct: 81 EEKRILGLVLLRGEHI 96
>gi|336363832|gb|EGN92203.1| hypothetical protein SERLA73DRAFT_147568 [Serpula lacrymans var.
lacrymans S7.3]
gi|336380958|gb|EGO22110.1| hypothetical protein SERLADRAFT_394784 [Serpula lacrymans var.
lacrymans S7.9]
Length = 100
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEY--LSPEVFESKEENGAQE--ARLLGLVMVPGQ 56
+ DGR L G L DR N++L C E+ + P+ + E ++ R LGLV++ G+
Sbjct: 23 INDGRALTGQMLAFDRHMNLVLADCEEFRRVRPKKKAGETETPPEQEMKRALGLVILRGE 82
Query: 57 HI 58
+
Sbjct: 83 TV 84
>gi|300176167|emb|CBK23478.2| unnamed protein product [Blastocystis hominis]
Length = 234
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 11/64 (17%)
Query: 3 DGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEE----NGAQEAR----LLGLVMVP 54
+ RVLVGT + D+ N+ILG C E+ SK NG E R LGLV++
Sbjct: 15 ENRVLVGTLMAFDKHMNLILGDCEEFRK---IRSKSGVAVVNGVIEEREEKNTLGLVLLR 71
Query: 55 GQHI 58
G++I
Sbjct: 72 GENI 75
>gi|393243225|gb|EJD50740.1| Sm-like ribonucleo protein [Auricularia delicata TFB-10046 SS5]
Length = 183
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYL----SPEVFESKEENGAQE--ARLLGLVMVP 54
+ DGR LVG L DR N++L C E+ + ES E ++ R LGLV++
Sbjct: 23 LNDGRALVGHMLAFDRHMNLVLADCEEFRRVRPKKKAGESSEGPAPEQEIKRTLGLVILR 82
Query: 55 GQHI 58
G+ +
Sbjct: 83 GETV 86
>gi|403215910|emb|CCK70408.1| hypothetical protein KNAG_0E01440 [Kazachstania naganishii CBS
8797]
Length = 165
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 3 DGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQ-----EARLLGLVMVPGQH 57
DGR +G L D+ N++L C E P+ + K G E R+LGL ++ G+
Sbjct: 26 DGRSYIGEMLAFDKHMNLVLNECVEERIPKSQQMKIRQGNTKDVKIEKRVLGLTILRGEQ 85
Query: 58 I 58
I
Sbjct: 86 I 86
>gi|290992103|ref|XP_002678674.1| predicted protein [Naegleria gruberi]
gi|284092287|gb|EFC45930.1| predicted protein [Naegleria gruberi]
Length = 83
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR +VG F+ D+ N+++ C E+ SK E ++ R LG +++ G++I
Sbjct: 17 LQDGRQIVGKFMAFDKFMNLVVADCEEFRKIIPKGSKGEE-VEQKRSLGFLLIRGENI 73
>gi|397621038|gb|EJK66072.1| hypothetical protein THAOC_13028 [Thalassiosira oceanica]
Length = 175
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEY----LSPEVFESKEENGAQEARLLGLVMVPGQ 56
M D RV+VG F DR N++L E+ +P+ ES E + R L +VPGQ
Sbjct: 97 MDDKRVVVGKFCTLDRMCNIVLKDVTEFRRIGYAPDGEESGEAHVWDTERELPCAVVPGQ 156
Query: 57 HI 58
+
Sbjct: 157 RL 158
>gi|399217788|emb|CCF74675.1| unnamed protein product [Babesia microti strain RI]
Length = 138
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ D R +G F+ DR N++L C EY + S +E + R LG V++ G+++
Sbjct: 19 IKDNRRFIGVFIAFDRHMNLVLADCEEYRMIKKQPSDKEP-VEIKRTLGFVLLRGENV 75
>gi|167535750|ref|XP_001749548.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771940|gb|EDQ85599.1| predicted protein [Monosiga brevicollis MX1]
Length = 137
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEY---LSPEVFESKEE 39
+ DGR+++GT C D AN++L EY SP S+E
Sbjct: 59 LKDGRIVLGTLECVDSRANIVLTGAAEYRLRASPLAMHSRER 100
>gi|330802101|ref|XP_003289059.1| hypothetical protein DICPUDRAFT_88331 [Dictyostelium purpureum]
gi|325080893|gb|EGC34430.1| hypothetical protein DICPUDRAFT_88331 [Dictyostelium purpureum]
Length = 250
Score = 35.4 bits (80), Expect = 4.5, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGRV+VG FL D+ NV++ E+ + K + +E R LG++++ G+ +
Sbjct: 22 IQDGRVIVGRFLAFDKHMNVVICDAEEF---RRIKQKGKEDREEKRTLGMLLIRGETV 76
>gi|302849879|ref|XP_002956468.1| hypothetical protein VOLCADRAFT_107252 [Volvox carteri f.
nagariensis]
gi|300258166|gb|EFJ42405.1| hypothetical protein VOLCADRAFT_107252 [Volvox carteri f.
nagariensis]
Length = 297
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ D R +VG F+ DR N++LG E+ + K E +E R+LGLV++ G+ I
Sbjct: 21 LVDSRQIVGRFMAFDRHMNLVLGDSEEFRRLPPKKGKSEEEREERRVLGLVLLRGEEI 78
>gi|336378364|gb|EGO19522.1| hypothetical protein SERLADRAFT_479054 [Serpula lacrymans var.
lacrymans S7.9]
Length = 101
Score = 35.0 bits (79), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 7/54 (12%)
Query: 3 DGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQ 56
DGR+ VGTF+ TD+ N++L + EY + + NG R +G VM+P +
Sbjct: 30 DGRIFVGTFMGTDQLLNILLLNTEEY---RIGTEEYPNG----RFVGQVMIPWK 76
>gi|119175495|ref|XP_001239965.1| hypothetical protein CIMG_09586 [Coccidioides immitis RS]
gi|392870163|gb|EAS27328.2| hypothetical protein CIMG_09586 [Coccidioides immitis RS]
Length = 223
Score = 35.0 bits (79), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGA-------QEARLLGLVMV 53
+ DGR + G L D+ N++L E+ + ++K G +E R LGL +V
Sbjct: 21 LNDGRQMTGQMLAFDKHMNLVLADTEEFRKVKRRQAKGPQGGNGPLVETEEKRTLGLTIV 80
Query: 54 PGQHI 58
G H+
Sbjct: 81 RGTHV 85
>gi|303314917|ref|XP_003067467.1| LSM domain containing protein [Coccidioides posadasii C735 delta
SOWgp]
gi|240107135|gb|EER25322.1| LSM domain containing protein [Coccidioides posadasii C735 delta
SOWgp]
gi|320037834|gb|EFW19771.1| conserved hypothetical protein [Coccidioides posadasii str.
Silveira]
Length = 223
Score = 35.0 bits (79), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGA-------QEARLLGLVMV 53
+ DGR + G L D+ N++L E+ + ++K G +E R LGL +V
Sbjct: 21 LNDGRQMTGQMLAFDKHMNLVLADTEEFRKVKRRQAKGPQGGNGPLVETEEKRTLGLTIV 80
Query: 54 PGQHI 58
G H+
Sbjct: 81 RGTHV 85
>gi|255087740|ref|XP_002505793.1| predicted protein [Micromonas sp. RCC299]
gi|226521063|gb|ACO67051.1| predicted protein [Micromonas sp. RCC299]
Length = 204
Score = 35.0 bits (79), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEY--LSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR +VG F+ DR N++L E+ L P+ ++E+ + R+LG +++ G+ +
Sbjct: 21 IVDGRQIVGRFMAFDRHMNLVLSDAEEFRKLPPKKGLTEEDRAVR--RVLGFILLRGEEV 78
>gi|405122609|gb|AFR97375.1| smb [Cryptococcus neoformans var. grubii H99]
Length = 160
Score = 35.0 bits (79), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLS-----PEVFESKEENGAQEARLLGLVMVPG 55
+ DGR LVG L D+ N +L C E+ + + ++ Q+ R LGLV++ G
Sbjct: 13 LNDGRSLVGQMLAYDKHMNFVLAECEEFRTVKGKKSKSSSNEPAPTTQQKRTLGLVILRG 72
Query: 56 QHI 58
+ I
Sbjct: 73 ETI 75
>gi|397641777|gb|EJK74845.1| hypothetical protein THAOC_03454 [Thalassiosira oceanica]
Length = 1567
Score = 35.0 bits (79), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 33/58 (56%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR +VGTFL D+ N++L E+ + + + E R LGL+++ G+++
Sbjct: 1277 LADGRTIVGTFLAFDKHLNLVLVDAEEFRTLKSSRAAILEERVEKRSLGLIILRGENV 1334
>gi|353237612|emb|CCA69581.1| hypothetical protein PIIN_03520 [Piriformospora indica DSM 11827]
Length = 98
Score = 35.0 bits (79), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 7/58 (12%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
M DGRV++G + D+ +N++L C E +E+GA ++ LG+ MV G I
Sbjct: 16 MQDGRVIMGNLVGWDQRSNIVLADCVER------RFSQESGATDS-ALGVYMVKGDQI 66
>gi|70994546|ref|XP_752051.1| small nuclear ribonucleoprotein SmB [Aspergillus fumigatus Af293]
gi|66849685|gb|EAL90013.1| small nuclear ribonucleoprotein SmB, putative [Aspergillus
fumigatus Af293]
Length = 357
Score = 35.0 bits (79), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENG--------AQEARLLGLVM 52
+TDGR + G L D+ N++L E+ + +SK G A+E R LGL +
Sbjct: 139 LTDGRQMTGQMLAFDKHMNLVLADTEEFRRVKR-KSKPAAGPSNAPLVEAEEKRTLGLTI 197
Query: 53 VPGQHI 58
V G H+
Sbjct: 198 VRGTHV 203
>gi|159125035|gb|EDP50152.1| small nuclear ribonucleoprotein SmB, putative [Aspergillus
fumigatus A1163]
Length = 357
Score = 35.0 bits (79), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENG--------AQEARLLGLVM 52
+TDGR + G L D+ N++L E+ + +SK G A+E R LGL +
Sbjct: 139 LTDGRQMTGQMLAFDKHMNLVLADTEEFRRVKR-KSKPAAGPSNAPLVEAEEKRTLGLTI 197
Query: 53 VPGQHI 58
V G H+
Sbjct: 198 VRGTHV 203
>gi|452837597|gb|EME39539.1| hypothetical protein DOTSEDRAFT_75264 [Dothistroma septosporum
NZE10]
Length = 206
Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 22/74 (29%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLS----------------PEVFESKEENGAQE 44
MTDGR LVG L D+ N++L C E+ +V E++E+
Sbjct: 18 MTDGRQLVGQMLAFDKHMNLVLSECEEFRKVKRKSKAGGAPGAASAAQVIETEEK----- 72
Query: 45 ARLLGLVMVPGQHI 58
R+LGL +V G I
Sbjct: 73 -RMLGLAIVRGATI 85
>gi|119500980|ref|XP_001267247.1| small nuclear ribonucleoprotein SmB, putative [Neosartorya
fischeri NRRL 181]
gi|119415412|gb|EAW25350.1| small nuclear ribonucleoprotein SmB, putative [Neosartorya
fischeri NRRL 181]
Length = 215
Score = 35.0 bits (79), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENG--------AQEARLLGLVM 52
+TDGR + G L D+ N++L E+ + +SK G A+E R LGL +
Sbjct: 18 LTDGRQMTGQMLAFDKHMNLVLADTEEFRRVKR-KSKPAAGPSNAPLVEAEEKRTLGLTI 76
Query: 53 VPGQHI 58
V G H+
Sbjct: 77 VRGTHV 82
>gi|336265444|ref|XP_003347493.1| hypothetical protein SMAC_08060 [Sordaria macrospora k-hell]
gi|380087975|emb|CCC05193.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 210
Score = 34.7 bits (78), Expect = 6.4, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSP 31
+TDGR+ G F C D ++N+IL S EY P
Sbjct: 33 VTDGRMFWGQFKCVDAESNIILHSTYEYRFP 63
>gi|339249835|ref|XP_003373905.1| small nuclear ribonucleoprotein-associated protein B [Trichinella
spiralis]
gi|316969881|gb|EFV53916.1| small nuclear ribonucleoprotein-associated protein B [Trichinella
spiralis]
Length = 199
Score = 34.7 bits (78), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEY--LSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ D R+LVG D+ N++L C E+ P+ + + +E R LG V++ G+HI
Sbjct: 31 LQDSRILVGYLKAFDKYLNIVLSECEEFRRYRPKAGRTVDR---EEKRTLGFVLLRGEHI 87
>gi|453081814|gb|EMF09862.1| Sm-like ribonucleo protein [Mycosphaerella populorum SO2202]
Length = 207
Score = 34.7 bits (78), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 14/69 (20%)
Query: 2 TDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGA------------QEARLLG 49
DGR LVG L D+ N++L C E+ +V ++ GA +E R LG
Sbjct: 23 NDGRQLVGQMLAFDKHMNLVLADCEEFR--KVKRKAKQGGAPGATTSGQTVETEEKRSLG 80
Query: 50 LVMVPGQHI 58
L +V G +I
Sbjct: 81 LAIVRGANI 89
>gi|121706898|ref|XP_001271668.1| small nuclear ribonucleoprotein SmB, putative [Aspergillus
clavatus NRRL 1]
gi|119399816|gb|EAW10242.1| small nuclear ribonucleoprotein SmB, putative [Aspergillus
clavatus NRRL 1]
Length = 219
Score = 34.7 bits (78), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENG--------AQEARLLGLVM 52
+TDGR + G L D+ N++L E+ + +SK G A+E R LGL +
Sbjct: 21 LTDGRQMTGQMLAFDKHMNLVLADTEEFRRVK-RKSKPAAGPSNAPLVEAEEKRTLGLTI 79
Query: 53 VPGQHI 58
V G H+
Sbjct: 80 VRGTHV 85
>gi|294882102|ref|XP_002769608.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239873160|gb|EER02326.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 83
Score = 34.3 bits (77), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 7/56 (12%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQ 56
+TDGR + G C D N++L + E + + + R +G+VM+PG+
Sbjct: 21 LTDGRDITGRLYCIDNKENIVLRNAVE-------KRRRDGEYSSVRKIGIVMIPGK 69
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.138 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,004,459,285
Number of Sequences: 23463169
Number of extensions: 31169358
Number of successful extensions: 60177
Number of sequences better than 100.0: 499
Number of HSP's better than 100.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 283
Number of HSP's that attempted gapping in prelim test: 59759
Number of HSP's gapped (non-prelim): 504
length of query: 60
length of database: 8,064,228,071
effective HSP length: 33
effective length of query: 27
effective length of database: 7,289,943,494
effective search space: 196828474338
effective search space used: 196828474338
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 69 (31.2 bits)