BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1222
(60 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Y9A|A Chain A, Structure Of The Spliceosomal U4 Snrnp Core Domain
pdb|2Y9A|H Chain H, Structure Of The Spliceosomal U4 Snrnp Core Domain
pdb|2Y9A|O Chain O, Structure Of The Spliceosomal U4 Snrnp Core Domain
pdb|2Y9B|A Chain A, Structure Of The Spliceosomal U4 Snrnp Core Domain
pdb|2Y9B|H Chain H, Structure Of The Spliceosomal U4 Snrnp Core Domain
pdb|2Y9B|O Chain O, Structure Of The Spliceosomal U4 Snrnp Core Domain
pdb|2Y9C|A Chain A, Structure Of The Spliceosomal U4 Snrnp Core Domain
pdb|2Y9C|H Chain H, Structure Of The Spliceosomal U4 Snrnp Core Domain
pdb|2Y9C|O Chain O, Structure Of The Spliceosomal U4 Snrnp Core Domain
pdb|2Y9D|A Chain A, Structure Of The Spliceosomal U4 Snrnp Core Domain
pdb|2Y9D|H Chain H, Structure Of The Spliceosomal U4 Snrnp Core Domain
pdb|2Y9D|O Chain O, Structure Of The Spliceosomal U4 Snrnp Core Domain
Length = 95
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE-REEKRVLGLVLLRGENL 77
>pdb|1D3B|B Chain B, Crystal Structure Of The D3b Subcomplex Of The Human
Core Snrnp Domain At 2.0a Resolution
pdb|1D3B|D Chain D, Crystal Structure Of The D3b Subcomplex Of The Human
Core Snrnp Domain At 2.0a Resolution
pdb|1D3B|F Chain F, Crystal Structure Of The D3b Subcomplex Of The Human
Core Snrnp Domain At 2.0a Resolution
pdb|1D3B|H Chain H, Crystal Structure Of The D3b Subcomplex Of The Human
Core Snrnp Domain At 2.0a Resolution
pdb|1D3B|J Chain J, Crystal Structure Of The D3b Subcomplex Of The Human
Core Snrnp Domain At 2.0a Resolution
pdb|1D3B|L Chain L, Crystal Structure Of The D3b Subcomplex Of The Human
Core Snrnp Domain At 2.0a Resolution
Length = 91
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE-REEKRVLGLVLLRGENL 77
>pdb|3PGW|B Chain B, Crystal Structure Of Human U1 Snrnp
pdb|3PGW|Q Chain Q, Crystal Structure Of Human U1 Snrnp
Length = 231
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE-REEKRVLGLVLLRGENL 77
>pdb|3CW1|A Chain A, Crystal Structure Of Human Spliceosomal U1 Snrnp
pdb|3CW1|H Chain H, Crystal Structure Of Human Spliceosomal U1 Snrnp
pdb|3CW1|I Chain I, Crystal Structure Of Human Spliceosomal U1 Snrnp
pdb|3CW1|J Chain J, Crystal Structure Of Human Spliceosomal U1 Snrnp
Length = 174
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE-REEKRVLGLVLLRGENL 77
>pdb|4EJN|A Chain A, Crystal Structure Of Autoinhibited Form Of Akt1 In Complex
With N-(4-
(5-(3-Acetamidophenyl)-2-(2-Aminopyridin-3-Yl)-3h-
Imidazo[4,5- B]pyridin-3-Yl)benzyl)-3-Fluorobenzamide
Length = 446
Score = 29.3 bits (64), Expect = 0.55, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 3 DGRVLVGTF-LCTD--RDANVILGSCG--EYLSPEVFESKEENGAQEARLLGLVM 52
DG + + F LC + +D + CG EYL+PEV E + A + LG+VM
Sbjct: 285 DGHIKITDFGLCKEGIKDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVM 339
>pdb|3O96|A Chain A, Crystal Structure Of Human Akt1 With An Allosteric
Inhibitor
Length = 446
Score = 29.3 bits (64), Expect = 0.55, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 3 DGRVLVGTF-LCTD--RDANVILGSCG--EYLSPEVFESKEENGAQEARLLGLVM 52
DG + + F LC + +D + CG EYL+PEV E + A + LG+VM
Sbjct: 288 DGHIKITDFGLCKEGIKDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVM 342
>pdb|4GV1|A Chain A, Pkb Alpha In Complex With Azd5363
Length = 340
Score = 29.3 bits (64), Expect = 0.58, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 3 DGRVLVGTF-LCTD--RDANVILGSCG--EYLSPEVFESKEENGAQEARLLGLVM 52
DG + + F LC + +D + CG EYL+PEV E + A + LG+VM
Sbjct: 145 DGHIKITDFGLCKEGIKDGATMKXFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVM 199
>pdb|3OCB|A Chain A, Akt1 Kinase Domain With Pyrrolopyrimidine Inhibitor
pdb|3OCB|B Chain B, Akt1 Kinase Domain With Pyrrolopyrimidine Inhibitor
pdb|3OW4|A Chain A, Discovery Of Dihydrothieno- And Dihydrofuropyrimidines As
Potent Pan Akt Inhibitors
pdb|3OW4|B Chain B, Discovery Of Dihydrothieno- And Dihydrofuropyrimidines As
Potent Pan Akt Inhibitors
pdb|3QKK|A Chain A, Spirochromane Akt Inhibitors
pdb|3QKL|A Chain A, Spirochromane Akt Inhibitors
pdb|3QKM|A Chain A, Spirocyclic Sulfonamides As Akt Inhibitors
pdb|4EKK|A Chain A, Akt1 With Amp-Pnp
pdb|4EKK|B Chain B, Akt1 With Amp-Pnp
pdb|4EKL|A Chain A, Akt1 With Gdc0068
Length = 341
Score = 29.3 bits (64), Expect = 0.58, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 3 DGRVLVGTF-LCTD--RDANVILGSCG--EYLSPEVFESKEENGAQEARLLGLVM 52
DG + + F LC + +D + CG EYL+PEV E + A + LG+VM
Sbjct: 146 DGHIKITDFGLCKEGIKDGATMKXFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVM 200
>pdb|3CQU|A Chain A, Crystal Structure Of Akt-1 Complexed With Substrate
Peptide And Inhibitor
pdb|3CQW|A Chain A, Crystal Structure Of Akt-1 Complexed With Substrate
Peptide And Inhibitor
pdb|3MV5|A Chain A, Crystal Structure Of Akt-1-Inhibitor Complexes
pdb|3MVH|A Chain A, Crystal Structure Of Akt-1-Inhibitor Complexes
Length = 342
Score = 29.3 bits (64), Expect = 0.59, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 3 DGRVLVGTF-LCTD--RDANVILGSCG--EYLSPEVFESKEENGAQEARLLGLVM 52
DG + + F LC + +D + CG EYL+PEV E + A + LG+VM
Sbjct: 147 DGHIKITDFGLCKEGIKDGATMKXFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVM 201
>pdb|1MRV|A Chain A, Crystal Structure Of An Inactive Akt2 Kinase Domain
pdb|1MRY|A Chain A, Crystal Structure Of An Inactive Akt2 Kinase Domain
Length = 339
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 3 DGRVLVGTF-LCTD--RDANVILGSCG--EYLSPEVFESKEENGAQEARLLGLVM 52
DG + + F LC + D + CG EYL+PEV E + A + LG+VM
Sbjct: 144 DGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVM 198
>pdb|1GZN|A Chain A, Structure Of Pkb Kinase Domain
Length = 335
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 3 DGRVLVGTF-LCTD--RDANVILGSCG--EYLSPEVFESKEENGAQEARLLGLVM 52
DG + + F LC + D + CG EYL+PEV E + A + LG+VM
Sbjct: 141 DGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVM 195
>pdb|1GZK|A Chain A, Molecular Mechanism For The Regulation Of Protein Kinase B
Akt By Hydrophobic Motif Phosphorylation
pdb|1GZO|A Chain A, Structure Of Protein Kinase B Unphosphorylated
Length = 315
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 3 DGRVLVGTF-LCTD--RDANVILGSCG--EYLSPEVFESKEENGAQEARLLGLVM 52
DG + + F LC + D + CG EYL+PEV E + A + LG+VM
Sbjct: 141 DGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVM 195
>pdb|1O6K|A Chain A, Structure Of Activated Form Of Pkb Kinase Domain S474d
With Gsk3 Peptide And Amp-Pnp
Length = 336
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 3 DGRVLVGTF-LCTD--RDANVILGSCG--EYLSPEVFESKEENGAQEARLLGLVM 52
DG + + F LC + D + CG EYL+PEV E + A + LG+VM
Sbjct: 141 DGHIKITDFGLCKEGISDGATMKXFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVM 195
>pdb|3E87|A Chain A, Crystal Structures Of The Kinase Domain Of Akt2 In Complex
With Atp- Competitive Inhibitors
pdb|3E87|B Chain B, Crystal Structures Of The Kinase Domain Of Akt2 In Complex
With Atp- Competitive Inhibitors
pdb|3E88|A Chain A, Crystal Structures Of The Kinase Domain Of Akt2 In Complex
With Atp- Competitive Inhibitors
pdb|3E88|B Chain B, Crystal Structures Of The Kinase Domain Of Akt2 In Complex
With Atp- Competitive Inhibitors
pdb|3E8D|A Chain A, Crystal Structures Of The Kinase Domain Of Akt2 In Complex
With Atp- Competitive Inhibitors
pdb|3E8D|B Chain B, Crystal Structures Of The Kinase Domain Of Akt2 In Complex
With Atp- Competitive Inhibitors
pdb|3D0E|A Chain A, Crystal Structure Of Human Akt2 In Complex With Gsk690693
pdb|3D0E|B Chain B, Crystal Structure Of Human Akt2 In Complex With Gsk690693
Length = 335
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 3 DGRVLVGTF-LCTD--RDANVILGSCG--EYLSPEVFESKEENGAQEARLLGLVM 52
DG + + F LC + D + CG EYL+PEV E + A + LG+VM
Sbjct: 141 DGHIKITDFGLCKEGISDGATMKXFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVM 195
>pdb|1O6L|A Chain A, Crystal Structure Of An Activated Akt/protein Kinase B
(pkb-pif Chimera) Ternary Complex With Amp-pnp And Gsk3
Peptide
Length = 337
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 3 DGRVLVGTF-LCTD--RDANVILGSCG--EYLSPEVFESKEENGAQEARLLGLVM 52
DG + + F LC + D + CG EYL+PEV E + A + LG+VM
Sbjct: 141 DGHIKITDFGLCKEGISDGATMKXFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVM 195
>pdb|2JDO|A Chain A, Structure Of Pkb-Beta (Akt2) Complexed With
Isoquinoline-5- Sulfonic Acid (2-(2-(4-Chlorobenzyloxy)
Ethylamino)ethyl) Amide
pdb|2JDR|A Chain A, Structure Of Pkb-Beta (Akt2) Complexed With The Inhibitor
A- 443654
pdb|2UW9|A Chain A, Structure Of Pkb-Beta (Akt2) Complexed With 4-(4-Chloro-
Phenyl)-4-(4-(1h-Pyrazol-4-Yl)-Phenyl)-Piperidine
pdb|2X39|A Chain A, Structure Of
4-Amino-N-(4-Chlorobenzyl)-1-(7h-Pyrrolo(2,3-D)
Pyrimidin-4-Yl)piperidine-4-Carboxamide Bound To Pkb
pdb|2XH5|A Chain A, Structure Of 4-(4-Tert-Butylbenzyl)-1-(7h-Pyrrolo(2,3-D)
Pyrimidin-4-Yl)piperidin-4-Amine Bound To Pkb
Length = 342
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 3 DGRVLVGTF-LCTD--RDANVILGSCG--EYLSPEVFESKEENGAQEARLLGLVM 52
DG + + F LC + D + CG EYL+PEV E + A + LG+VM
Sbjct: 146 DGHIKITDFGLCKEGISDGATMKXFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVM 200
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 14 TDRDANVILGSCGEYLSPEVFE 35
TDR + ILGS GE ++PE +E
Sbjct: 375 TDRSSLRILGSAGEPINPEAWE 396
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 14 TDRDANVILGSCGEYLSPEVFE 35
TDR + ILGS GE ++PE +E
Sbjct: 375 TDRSSLRILGSVGEPINPEAWE 396
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 14 TDRDANVILGSCGEYLSPEVFE 35
TDR + ILGS GE ++PE +E
Sbjct: 375 TDRSSLRILGSVGEPINPEAWE 396
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 14 TDRDANVILGSCGEYLSPEVFE 35
TDR + ILGS GE ++PE +E
Sbjct: 375 TDRSSLRILGSVGEPINPEAWE 396
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 14 TDRDANVILGSCGEYLSPEVFE 35
TDR + ILGS GE ++PE +E
Sbjct: 375 TDRSSLRILGSVGEPINPEAWE 396
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 14 TDRDANVILGSCGEYLSPEVFE 35
TDR + ILGS GE ++PE +E
Sbjct: 375 TDRSSLRILGSVGEPINPEAWE 396
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 14 TDRDANVILGSCGEYLSPEVFE 35
TDR + ILGS GE ++PE +E
Sbjct: 375 TDRSSLRILGSVGEPINPEAWE 396
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.138 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,887,577
Number of Sequences: 62578
Number of extensions: 58822
Number of successful extensions: 173
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 162
Number of HSP's gapped (non-prelim): 23
length of query: 60
length of database: 14,973,337
effective HSP length: 31
effective length of query: 29
effective length of database: 13,033,419
effective search space: 377969151
effective search space used: 377969151
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)