BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1222
(60 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9BRA0|LSMD1_HUMAN LSM domain-containing protein 1 OS=Homo sapiens GN=LSMD1 PE=1 SV=1
Length = 125
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 39/58 (67%), Gaps = 5/58 (8%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
MTDGR LVG FLCTDRD NVILGS E+L P + A E R+LGL MVPG HI
Sbjct: 57 MTDGRTLVGCFLCTDRDCNVILGSAQEFLKP-----SDSFSAGEPRVLGLAMVPGHHI 109
>sp|Q9D2U5|LSMD1_MOUSE LSM domain-containing protein 1 OS=Mus musculus GN=Lsmd1 PE=2 SV=1
Length = 125
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 39/58 (67%), Gaps = 5/58 (8%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
MTDGR LVG FLCTDRD NVILGS E+L P + A E R+LGL MVPG HI
Sbjct: 57 MTDGRTLVGCFLCTDRDCNVILGSAQEFLKP-----SDSFSAGEPRVLGLAMVPGHHI 109
>sp|Q6GQ67|LMD1A_XENLA LSM domain-containing protein 1-A OS=Xenopus laevis GN=lsmd1-a
PE=3 SV=1
Length = 113
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/58 (58%), Positives = 39/58 (67%), Gaps = 5/58 (8%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
MTDGR L+G FLCTDRD NVILGS E+L P + +E R+LGL MVPG HI
Sbjct: 45 MTDGRSLIGCFLCTDRDCNVILGSAQEFLRP-----SDSFPVREPRVLGLAMVPGHHI 97
>sp|A4IGZ4|LSMD1_XENTR LSM domain-containing protein 1 OS=Xenopus tropicalis GN=lsmd1
PE=3 SV=2
Length = 113
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/58 (58%), Positives = 39/58 (67%), Gaps = 5/58 (8%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
MTDGR L+G FLCTDRD NVILGS E+L P + +E R+LGL MVPG HI
Sbjct: 45 MTDGRSLIGCFLCTDRDCNVILGSAQEFLRP-----SDSFPVREPRVLGLAMVPGHHI 97
>sp|Q6NU60|LMD1B_XENLA LSM domain-containing protein 1-B OS=Xenopus laevis GN=lsmd1-b
PE=3 SV=1
Length = 111
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/58 (58%), Positives = 39/58 (67%), Gaps = 5/58 (8%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
MTDGR L+G FLCTDRD NVILGS E+L P + +E R+LGL MVPG HI
Sbjct: 45 MTDGRSLIGCFLCTDRDCNVILGSAQEFLRP-----SDSFRIREPRVLGLAMVPGHHI 97
>sp|A2BIG9|LSMD1_DANRE LSM domain-containing protein 1 OS=Danio rerio GN=lsmd1 PE=2 SV=1
Length = 109
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/58 (56%), Positives = 39/58 (67%), Gaps = 5/58 (8%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
MTDGR LVG FLCTDRD NVILGS E+L +S + E R+LGL M+PG H+
Sbjct: 40 MTDGRTLVGLFLCTDRDCNVILGSAQEFL-----KSTDSLSQGEPRVLGLAMIPGHHV 92
>sp|P91918|RSMB_CAEEL Probable small nuclear ribonucleoprotein-associated protein B
OS=Caenorhabditis elegans GN=snr-2 PE=3 SV=1
Length = 160
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR +G F D+ N++L C E+ + K+ +G +E R+LGLV+V G+HI
Sbjct: 21 LQDGRTFIGFFKAFDKHMNILLAECEEHRQIKPKAGKKTDG-EEKRILGLVLVRGEHI 77
>sp|Q9PV94|RSMB_CHICK Small nuclear ribonucleoprotein-associated protein B' OS=Gallus
gallus GN=SNRPB PE=2 SV=1
Length = 240
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGRV +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRVFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPE-REEKRVLGLVLLRGENL 77
>sp|P27048|RSMB_MOUSE Small nuclear ribonucleoprotein-associated protein B OS=Mus
musculus GN=Snrpb PE=1 SV=1
Length = 231
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE-REEKRVLGLVLLRGENL 77
>sp|P14678|RSMB_HUMAN Small nuclear ribonucleoprotein-associated proteins B and B'
OS=Homo sapiens GN=SNRPB PE=1 SV=2
Length = 240
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE-REEKRVLGLVLLRGENL 77
>sp|Q9TU67|RSMB_ERIEU Small nuclear ribonucleoprotein-associated protein B'
OS=Erinaceus europaeus GN=SNRPB PE=2 SV=1
Length = 240
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE-REEKRVLGLVLLRGENL 77
>sp|Q9TU66|RSMB_MONDO Small nuclear ribonucleoprotein-associated protein B'
OS=Monodelphis domestica GN=SNRPB PE=2 SV=1
Length = 240
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE-REEKRVLGLVLLRGENL 77
>sp|Q58DW4|RSMB_BOVIN Small nuclear ribonucleoprotein-associated protein B' OS=Bos
taurus GN=SNRPB PE=2 SV=1
Length = 240
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE-REEKRVLGLVLLRGENL 77
>sp|O43080|YHS3_SCHPO Uncharacterized protein C947.03c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC947.03c PE=4 SV=2
Length = 116
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 12/58 (20%)
Query: 3 DGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHIPA 60
D R +G FLCTDR+ IL + EY +R LGLV++PG+HI +
Sbjct: 66 DERKFIGKFLCTDREGAAILSNTTEY------------NKGFSRALGLVVIPGKHIKS 111
>sp|Q9N1Q0|RSMB_MACEU Small nuclear ribonucleoprotein-associated protein B' OS=Macropus
eugenii GN=SNRPB PE=2 SV=1
Length = 240
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE-REEKRVLGLVLLRGENL 77
>sp|P63164|RSMN_RAT Small nuclear ribonucleoprotein-associated protein N OS=Rattus
norvegicus GN=Snrpn PE=2 SV=1
Length = 240
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + +K+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE-REEKRVLGLVLLRGENL 77
>sp|Q5R6I0|RSMN_PONAB Small nuclear ribonucleoprotein-associated protein N OS=Pongo
abelii GN=SNRPN PE=2 SV=1
Length = 240
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + +K+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE-REEKRVLGLVLLRGENL 77
>sp|P63163|RSMN_MOUSE Small nuclear ribonucleoprotein-associated protein N OS=Mus
musculus GN=Snrpn PE=2 SV=1
Length = 240
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + +K+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE-REEKRVLGLVLLRGENL 77
>sp|Q60HD3|RSMN_MACFA Small nuclear ribonucleoprotein-associated protein N OS=Macaca
fascicularis GN=SNRPN PE=2 SV=1
Length = 240
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + +K+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE-REEKRVLGLVLLRGENL 77
>sp|P63162|RSMN_HUMAN Small nuclear ribonucleoprotein-associated protein N OS=Homo
sapiens GN=SNRPN PE=1 SV=1
Length = 240
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + +K+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE-REEKRVLGLVLLRGENL 77
>sp|Q17QN3|RSMN_BOVIN Small nuclear ribonucleoprotein-associated protein N OS=Bos
taurus GN=SNRPN PE=2 SV=1
Length = 240
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + +K+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE-REEKRVLGLVLLRGENL 77
>sp|P17136|RSMB_RAT Small nuclear ribonucleoprotein-associated protein B (Fragment)
OS=Rattus norvegicus GN=Snrpb PE=2 SV=1
Length = 214
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ +GR+ +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 4 LQNGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE-REEKRVLGLVLLRGENL 60
>sp|Q05856|RSMB_DROME Small nuclear ribonucleoprotein-associated protein B
OS=Drosophila melanogaster GN=SmB PE=1 SV=1
Length = 199
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ D R +GTF D+ N+ILG C E+ SK +E R+LG V++ G++I
Sbjct: 21 LQDSRTFIGTFKAFDKHMNLILGDCEEFRKIRSKNSKVPE-REEKRVLGFVLLRGENI 77
>sp|Q55A45|RSMB_DICDI Small nuclear ribonucleoprotein-associated protein B
OS=Dictyostelium discoideum GN=snrpb PE=3 SV=1
Length = 274
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGRV+VG FL D+ NV++ E+ K + +E R LG++++ G+ +
Sbjct: 22 IQDGRVIVGRFLAFDKHMNVVICDAEEFRR---IRQKGKEDREEKRTLGMILIRGETV 76
>sp|Q10163|RSMB_SCHPO Small nuclear ribonucleoprotein-associated protein B
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=smb1 PE=1 SV=1
Length = 147
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 3 DGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
DGR VG L D N++L C EY + + +E R+LGLV++ G+ I
Sbjct: 20 DGRTFVGQLLAFDGFMNLVLSDCQEYRHIKKQNVPSNSVYEEKRMLGLVILRGEFI 75
>sp|P47017|LSM1_YEAST Sm-like protein LSm1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=LSM1 PE=1 SV=1
Length = 172
Score = 35.8 bits (81), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+L G D+ AN+IL C E ++ S+E A+E R G+ M+ G+++
Sbjct: 58 LRDGRMLFGVLRTFDQYANLILQDCVE----RIYFSEENKYAEEDR--GIFMIRGENV 109
>sp|P53905|LSM7_YEAST U6 snRNA-associated Sm-like protein LSm7 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LSM7 PE=1
SV=2
Length = 115
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 4 GRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPG 55
G++++G D+ N++L EY+S E+ E ++ AR LGL ++ G
Sbjct: 45 GKLVIGVLKGYDQLMNLVLDDTVEYMSNPDDENNTELISKNARKLGLTVIRG 96
>sp|Q09746|BZZ1_SCHPO Protein BZZ1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=bzz1 PE=3 SV=1
Length = 642
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 15 DRDANVILGSCGEYLSPEVFESKEENGAQEARLLGL 50
D DA V+ GSC YL + SK + G Q+ L+ L
Sbjct: 300 DTDALVVDGSCKNYLRNLLVHSKNDLGKQKGELVSL 335
>sp|P23059|NAA38_YEAST N-alpha-acetyltransferase 38, NatC auxiliary subunit
OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=MAK31 PE=1 SV=1
Length = 88
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 12/60 (20%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHIPA 60
+T+ R+LVG+ + D N++L EE +R++GLV VP + +
Sbjct: 18 LTEDRILVGSLVAVDAQMNLLLDHV------------EERMGSSSRMMGLVSVPRRSVKT 65
>sp|Q5RCP3|NAA38_PONAB N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Pongo
abelii GN=NAA38 PE=3 SV=3
Length = 96
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
Query: 2 TDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHIP 59
+DGR++VGT D+ N+IL E VF S + E +LGL +V G ++
Sbjct: 18 SDGRMIVGTLKGFDQTINLILDESHE----RVFSSSQ---GVEQVVLGLYIVRGDNVA 68
>sp|Q6ZWM4|NAA38_MOUSE N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Mus
musculus GN=Naa38 PE=3 SV=3
Length = 96
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
Query: 2 TDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHIP 59
+DGR++VGT D+ N+IL E VF S + E +LGL +V G ++
Sbjct: 18 SDGRMIVGTLKGFDQTINLILDESHE----RVFSSSQ---GVEQVVLGLYIVRGDNVA 68
>sp|O95777|NAA38_HUMAN N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Homo
sapiens GN=NAA38 PE=1 SV=3
Length = 96
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
Query: 2 TDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHIP 59
+DGR++VGT D+ N+IL E VF S + E +LGL +V G ++
Sbjct: 18 SDGRMIVGTLKGFDQTINLILDESHE----RVFSSSQ---GVEQVVLGLYIVRGDNVA 68
>sp|Q3ZCE0|NAA38_BOVIN N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Bos
taurus GN=NAA38 PE=3 SV=3
Length = 96
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
Query: 2 TDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHIP 59
+DGR++VGT D+ N+IL E VF S + E +LGL +V G ++
Sbjct: 18 SDGRMIVGTLKGFDQTINLILDESHE----RVFSSSQ---GVEQVVLGLYIVRGDNVA 68
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.138 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,073,244
Number of Sequences: 539616
Number of extensions: 763713
Number of successful extensions: 1425
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1390
Number of HSP's gapped (non-prelim): 33
length of query: 60
length of database: 191,569,459
effective HSP length: 33
effective length of query: 27
effective length of database: 173,762,131
effective search space: 4691577537
effective search space used: 4691577537
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)