Query psy1222
Match_columns 60
No_of_seqs 135 out of 1002
Neff 7.2
Searched_HMMs 29240
Date Fri Aug 16 21:51:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1222.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1222hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4emg_A Probable U6 snRNA-assoc 99.8 1.7E-21 5.7E-26 109.3 2.7 60 1-60 26-87 (93)
2 1d3b_B Protein (small nuclear 99.8 1.7E-21 5.7E-26 108.4 2.6 59 1-60 21-79 (91)
3 3pgw_B SM B; protein-RNA compl 99.8 3.6E-21 1.2E-25 122.2 3.6 59 1-60 21-79 (231)
4 3bw1_A SMX4 protein, U6 snRNA- 99.8 2.5E-21 8.4E-26 109.1 2.3 56 1-60 27-82 (96)
5 4emk_C U6 snRNA-associated SM- 99.8 5.1E-21 1.7E-25 110.7 3.5 56 1-60 40-95 (113)
6 3s6n_G Small nuclear ribonucle 99.8 1.2E-20 4.2E-25 102.3 3.3 48 1-59 21-68 (76)
7 3s6n_E Small nuclear ribonucle 99.8 1.6E-20 5.6E-25 105.3 3.7 49 2-60 38-86 (92)
8 1b34_B Protein (small nuclear 99.8 1.4E-20 4.9E-25 109.2 3.3 60 1-60 46-108 (118)
9 1h64_1 SnRNP SM-like protein; 99.8 1.8E-20 6.3E-25 101.1 2.9 48 1-59 21-68 (75)
10 4emk_A U6 snRNA-associated SM- 99.8 2.7E-20 9.4E-25 104.8 3.6 49 1-59 37-85 (94)
11 4emk_B U6 snRNA-associated SM- 99.8 5.7E-20 2E-24 99.3 4.2 49 1-60 21-69 (75)
12 1th7_A SnRNP-2, small nuclear 99.8 3.1E-20 1.1E-24 101.5 3.1 48 1-59 26-73 (81)
13 1i4k_A Putative snRNP SM-like 99.8 3.5E-20 1.2E-24 100.3 3.0 48 1-59 21-68 (77)
14 1mgq_A SM-like protein; LSM, R 99.8 5.1E-20 1.8E-24 101.2 2.9 48 1-59 32-79 (83)
15 1ljo_A Archaeal SM-like protei 99.8 8.3E-20 2.9E-24 99.0 3.0 48 1-59 22-70 (77)
16 2fwk_A U6 snRNA-associated SM- 99.8 5.3E-20 1.8E-24 107.2 1.6 60 1-60 45-108 (121)
17 1i8f_A Putative snRNP SM-like 99.8 1.1E-19 3.7E-24 99.4 2.4 47 1-59 28-74 (81)
18 3s6n_F Small nuclear ribonucle 99.7 3.9E-19 1.3E-23 98.4 2.6 48 1-59 23-70 (86)
19 1n9r_A SMF, small nuclear ribo 99.7 6.2E-19 2.1E-23 98.9 2.6 48 1-59 38-86 (93)
20 4emh_A Probable U6 snRNA-assoc 99.7 4.8E-18 1.6E-22 97.2 3.4 49 1-59 33-81 (105)
21 1d3b_A Protein (small nuclear 99.7 1.1E-17 3.9E-22 90.4 4.0 48 1-59 22-69 (75)
22 1b34_A Protein (small nuclear 99.7 1.2E-17 4.1E-22 97.0 3.8 48 1-59 19-66 (119)
23 1m5q_A SMAP3, small nuclear ri 99.6 2.7E-16 9.2E-21 92.7 3.7 44 1-59 17-60 (130)
24 2y9a_D Small nuclear ribonucle 99.6 8.2E-16 2.8E-20 90.2 3.8 48 1-59 22-69 (126)
25 1y96_A Gemin6, SIP2, GEM-assoc 97.2 0.00028 9.6E-09 38.8 3.0 25 1-25 24-49 (86)
26 1u1s_A HFQ protein; SM-like ba 95.1 0.018 6.3E-07 31.2 2.8 23 1-24 26-48 (82)
27 2ylb_A Protein HFQ; RNA-bindin 94.9 0.023 7.9E-07 30.2 2.8 23 1-24 28-50 (74)
28 3sb2_A Protein HFQ; SM-like, R 94.8 0.025 8.5E-07 30.5 2.8 22 1-23 27-48 (79)
29 2y90_A Protein HFQ; RNA-bindin 94.1 0.044 1.5E-06 30.9 2.8 23 1-24 28-50 (104)
30 3ahu_A Protein HFQ; SM-like mo 93.0 0.092 3.1E-06 28.2 2.9 22 1-23 30-51 (78)
31 2qtx_A Uncharacterized protein 92.4 0.13 4.3E-06 27.2 2.8 22 1-23 32-53 (71)
32 1kq1_A HFQ, HOST factor for Q 90.5 0.25 8.7E-06 26.3 2.8 22 1-23 26-47 (77)
33 1x4r_A PARP14 protein; WWE dom 83.4 0.069 2.3E-06 29.8 -2.1 20 9-28 35-54 (99)
34 3hfo_A SSR3341 protein; HFQ, S 80.4 2.2 7.4E-05 22.3 3.2 24 1-25 28-51 (70)
35 4hcz_A PHD finger protein 1; p 69.6 4.7 0.00016 20.3 2.6 30 2-31 15-47 (58)
36 2xk0_A Polycomb protein PCL; t 69.0 7.5 0.00026 20.2 3.4 30 2-31 27-57 (69)
37 1ycy_A Conserved hypothetical 65.2 4.4 0.00015 20.9 2.0 27 4-31 26-52 (71)
38 3rux_A BIRA bifunctional prote 64.2 8.5 0.00029 24.1 3.6 24 3-26 233-256 (270)
39 3hfn_A ASL2047 protein; HFQ, S 61.9 5.7 0.0002 20.7 2.1 24 1-25 30-53 (72)
40 4a53_A EDC3; RNA binding prote 58.6 8.2 0.00028 22.2 2.6 26 1-27 19-46 (125)
41 2eqj_A Metal-response element- 53.8 13 0.00044 19.1 2.6 29 2-30 25-56 (66)
42 2m0o_A PHD finger protein 1; t 51.7 9.7 0.00033 20.2 2.0 29 2-30 38-69 (79)
43 2wr8_A Putative uncharacterize 48.2 18 0.00063 22.9 3.2 22 4-25 171-192 (259)
44 2zbv_A Uncharacterized conserv 46.9 19 0.00067 22.8 3.2 21 4-24 167-187 (263)
45 2e5q_A PHD finger protein 19; 46.5 17 0.00059 18.5 2.3 29 2-30 19-50 (63)
46 1y96_B Gemin7, SIP3, GEM-assoc 46.3 25 0.00084 18.9 3.1 23 2-24 37-60 (85)
47 3rkx_A Biotin-[acetyl-COA-carb 45.7 22 0.00077 22.7 3.4 23 3-25 287-309 (323)
48 1bia_A BIRA bifunctional prote 45.2 22 0.00075 22.6 3.3 23 3-25 281-303 (321)
49 2vc8_A Enhancer of mRNA-decapp 45.1 23 0.0008 19.0 2.9 20 6-25 22-42 (84)
50 2e5p_A Protein PHF1, PHD finge 39.5 30 0.001 17.8 2.6 29 2-30 21-52 (68)
51 1ib8_A Conserved protein SP14. 37.5 27 0.00093 20.4 2.6 20 3-23 117-136 (164)
52 2dxu_A Biotin--[acetyl-COA-car 37.1 26 0.0009 21.4 2.6 21 4-25 198-218 (235)
53 2cw5_A Bacterial fluorinating 37.0 22 0.00075 22.5 2.2 19 7-25 174-192 (255)
54 2vxe_A CG10686-PA; EDC3, CAR-1 36.8 51 0.0017 17.7 4.7 53 4-58 23-76 (88)
55 2eay_A Biotin [acetyl-COA-carb 35.2 30 0.001 21.0 2.6 19 7-25 199-217 (233)
56 1rqp_A 5'-fluoro-5'-deoxyadeno 34.6 34 0.0012 22.2 2.9 21 4-24 199-220 (299)
57 2fb7_A SM-like protein, LSM-14 33.7 60 0.0021 17.7 4.8 53 4-58 29-82 (95)
58 2q6k_A Chlorinase; complex wit 31.6 31 0.001 22.1 2.3 21 4-24 172-193 (283)
59 3bfm_A Biotin protein ligase-l 29.5 55 0.0019 19.7 3.1 20 7-26 202-221 (235)
60 1ky9_A Protease DO, DEGP, HTRA 27.0 55 0.0019 21.7 3.0 26 1-26 117-142 (448)
61 4a8c_A Periplasmic PH-dependen 26.9 60 0.0021 21.4 3.2 25 1-25 94-118 (436)
62 3vg8_G Hypothetical protein TT 25.0 27 0.00092 19.7 1.0 14 9-22 31-44 (116)
63 3stj_A Protease DEGQ; serine p 23.9 91 0.0031 19.9 3.5 25 1-25 94-118 (345)
64 2e12_A SM-like motif, hypothet 23.3 39 0.0013 18.5 1.4 11 1-11 35-45 (101)
65 4e0q_A COP9 signalosome comple 22.1 68 0.0023 18.1 2.4 27 5-31 33-59 (141)
66 3pv2_A DEGQ; trypsin fold, PDZ 21.8 77 0.0026 21.1 3.0 25 1-25 108-132 (451)
67 3sti_A Protease DEGQ; serine p 20.9 1.2E+02 0.0041 18.4 3.5 25 1-25 94-118 (245)
68 2f4n_A Hypothetical protein MJ 20.8 28 0.00095 22.3 0.6 19 7-25 171-189 (273)
69 2ej9_A Putative biotin ligase; 20.5 76 0.0026 19.2 2.5 19 6-25 204-222 (237)
70 3mkv_A Putative amidohydrolase 20.2 22 0.00075 20.9 0.0 16 2-17 406-421 (426)
No 1
>4emg_A Probable U6 snRNA-associated SM-like protein LSM3; SM fold, mRNA decay, LSM proteins, RNA binding protein; 2.70A {Schizosaccharomyces pombe}
Probab=99.83 E-value=1.7e-21 Score=109.34 Aligned_cols=60 Identities=18% Similarity=0.241 Sum_probs=44.4
Q ss_pred CCCCceEEEEEEeecCCCceEecccccccCccccccccc--cchhhheeeeeeeecCCCCCC
Q psy1222 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEE--NGAQEARLLGLVMVPGQHIPA 60 (60)
Q Consensus 1 l~dgR~~~G~l~~~D~~~NlvL~~~~E~~~~~~~~~~~~--~~~~~~r~lG~v~irG~~Iv~ 60 (60)
|+|||+|.|+|+|||+||||||+||+|++...+++.+.. ......|.+|+++|||+||++
T Consensus 26 l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~r~lG~v~iRG~nVv~ 87 (93)
T 4emg_A 26 LRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLFVRGDSVIL 87 (93)
T ss_dssp ETTTEEEEEEEEEECTTCCEEEEEEEEEEC--------------CEEEEEEEEEECGGGEEE
T ss_pred ECCCcEEEEEEEEECCcccEEeecEEEEEeccccCCccccccccccEeEeceEEECCCeEEE
Confidence 579999999999999999999999999987643321100 112357999999999999974
No 2
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Probab=99.83 E-value=1.7e-21 Score=108.41 Aligned_cols=59 Identities=36% Similarity=0.685 Sum_probs=46.0
Q ss_pred CCCCceEEEEEEeecCCCceEecccccccCccccccccccchhhheeeeeeeecCCCCCC
Q psy1222 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHIPA 60 (60)
Q Consensus 1 l~dgR~~~G~l~~~D~~~NlvL~~~~E~~~~~~~~~~~~~~~~~~r~lG~v~irG~~Iv~ 60 (60)
|+|||+|.|+|+|||+||||||+||+|++...+.+.+. ......+.+|+++|||+||++
T Consensus 21 l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~-~~~~~~~~lg~v~iRG~~I~~ 79 (91)
T 1d3b_B 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQ-AEREEKRVLGLVLLRGENLVS 79 (91)
T ss_dssp ETTCCEEEEEEEECCTTCCEEEEEEEEEEEECCSSTTS-CCEEEEEEEEEEEECGGGEEE
T ss_pred ECCCeEEEEEEEEECCCCeEEecCEEEEeecccccccc-ccCccEeECCEEEECCCeEEE
Confidence 58999999999999999999999999986432211110 013468999999999999863
No 3
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A
Probab=99.82 E-value=3.6e-21 Score=122.20 Aligned_cols=59 Identities=36% Similarity=0.685 Sum_probs=47.8
Q ss_pred CCCCceEEEEEEeecCCCceEecccccccCccccccccccchhhheeeeeeeecCCCCCC
Q psy1222 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHIPA 60 (60)
Q Consensus 1 l~dgR~~~G~l~~~D~~~NlvL~~~~E~~~~~~~~~~~~~~~~~~r~lG~v~irG~~Iv~ 60 (60)
|+|||+|+|+|+|||+||||||+||+|++....++.++ ...+++|++|+++|||+||++
T Consensus 21 LkdGRel~GtLkgFDq~MNLVL~Da~E~~~ik~k~~k~-~~~~~~R~LGlV~IRGdnIV~ 79 (231)
T 3pgw_B 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQ-AEREEKRVLGLVLLRGENLVS 79 (231)
T ss_pred ECCCcEEEEEEEEEcccccEEecCEEEEEeccCccccc-ccccceeEeceEEECCCcEEE
Confidence 68999999999999999999999999998543222211 123578999999999999974
No 4
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, HOMO octamer, mRNA processing; 2.50A {Saccharomyces cerevisiae}
Probab=99.82 E-value=2.5e-21 Score=109.09 Aligned_cols=56 Identities=23% Similarity=0.339 Sum_probs=46.3
Q ss_pred CCCCceEEEEEEeecCCCceEecccccccCccccccccccchhhheeeeeeeecCCCCCC
Q psy1222 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHIPA 60 (60)
Q Consensus 1 l~dgR~~~G~l~~~D~~~NlvL~~~~E~~~~~~~~~~~~~~~~~~r~lG~v~irG~~Iv~ 60 (60)
|+|||+|.|+|+|||+||||||++|+|++...++.. .....|.+|+++|||+||++
T Consensus 27 Lk~gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~----~~~~~r~lG~v~IRG~nVv~ 82 (96)
T 3bw1_A 27 LRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEE----LSESERRCEMVFIRGDTVTL 82 (96)
T ss_dssp EGGGCEEEEEEEEECTTCCEEEEEEEEEEECCSTTC----CCEEEEEEEEEEECGGGEEE
T ss_pred ECCCcEEEEEEEEECCCCcEEEcCEEEEeccccccc----cCcceeEcCEEEECCCEEEE
Confidence 579999999999999999999999999986543210 12457899999999999863
No 5
>4emk_C U6 snRNA-associated SM-like protein LSM7; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_C
Probab=99.82 E-value=5.1e-21 Score=110.67 Aligned_cols=56 Identities=29% Similarity=0.332 Sum_probs=43.8
Q ss_pred CCCCceEEEEEEeecCCCceEecccccccCccccccccccchhhheeeeeeeecCCCCCC
Q psy1222 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHIPA 60 (60)
Q Consensus 1 l~dgR~~~G~l~~~D~~~NlvL~~~~E~~~~~~~~~~~~~~~~~~r~lG~v~irG~~Iv~ 60 (60)
|+|||+|+|+|+|||+||||||+||+|++...... ......|.+|+++|||+||++
T Consensus 40 L~dGr~~~G~L~~fD~~mNLVL~d~~E~~~~~~~~----~~~~~~r~lG~v~IRG~nIv~ 95 (113)
T 4emk_C 40 FTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDG----KLTGAIRKLGLVVVRGTTLVL 95 (113)
T ss_dssp ETTSCEEEEEEEEECTTCCEEEEEEEEEC-------------CCEEEEEEEEECTTTEEE
T ss_pred EeCCeEEEEEEEEEcCcccEEEeeEEEEEcCCCCc----ccccceeEccEEEECCCeEEE
Confidence 57999999999999999999999999998752110 112468999999999999974
No 6
>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G
Probab=99.81 E-value=1.2e-20 Score=102.26 Aligned_cols=48 Identities=23% Similarity=0.439 Sum_probs=41.4
Q ss_pred CCCCceEEEEEEeecCCCceEecccccccCccccccccccchhhheeeeeeeecCCCCC
Q psy1222 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHIP 59 (60)
Q Consensus 1 l~dgR~~~G~l~~~D~~~NlvL~~~~E~~~~~~~~~~~~~~~~~~r~lG~v~irG~~Iv 59 (60)
|+|||+|.|+|.|||+||||+|+||+|++.. ...+.+|+++|||++|+
T Consensus 21 Lk~gr~~~G~L~~~D~~mNlvL~~~~e~~~~-----------~~~~~lg~v~iRG~~I~ 68 (76)
T 3s6n_G 21 LNGGRHVQGILRGFDPFMNLVIDECVEMATS-----------GQQNNIGMVVIRGNSII 68 (76)
T ss_dssp ETTTEEEEEEEEEECTTCCEEEEEEEECCCC---------------CBSSEEECSSSEE
T ss_pred ECCCcEEEEEEEEECCcceEEEeceEEEccC-----------CcEeEcCEEEECCCeEE
Confidence 5899999999999999999999999999864 24688999999999986
No 7
>3s6n_E Small nuclear ribonucleoprotein E; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_E 2y9c_E 2y9d_E 3cw1_E 3pgw_E* 2y9a_E
Probab=99.80 E-value=1.6e-20 Score=105.29 Aligned_cols=49 Identities=22% Similarity=0.330 Sum_probs=43.9
Q ss_pred CCCceEEEEEEeecCCCceEecccccccCccccccccccchhhheeeeeeeecCCCCCC
Q psy1222 2 TDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHIPA 60 (60)
Q Consensus 2 ~dgR~~~G~l~~~D~~~NlvL~~~~E~~~~~~~~~~~~~~~~~~r~lG~v~irG~~Iv~ 60 (60)
+|||+|.|+|+|||+||||||+||+|+.... ...+.+|+++|||+||++
T Consensus 38 ~~gr~~~G~L~gfD~~mNlvL~d~~E~~~~~----------~~~~~lg~v~iRG~nV~~ 86 (92)
T 3s6n_E 38 QVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT----------KSRKQLGRIMLKGDNITL 86 (92)
T ss_dssp SCSSEEEEEEEEECTTCCEEEEEEEEECSSS----------CCEEEEEEEEECGGGEEE
T ss_pred cCCEEEEEEEEEEcCcCcEEEeeeEEEecCC----------CceeEcCeEEEeCCEEEE
Confidence 8999999999999999999999999998642 357889999999999863
No 8
>1b34_B Protein (small nuclear ribonucleoprotein SM D2); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_C 2y9b_C 2y9c_C 2y9d_C 3cw1_C 3pgw_Y* 3s6n_B
Probab=99.80 E-value=1.4e-20 Score=109.21 Aligned_cols=60 Identities=17% Similarity=0.293 Sum_probs=41.5
Q ss_pred CCCCceEEEEEEeecCCCceEecccccccCccccccccc---cchhhheeeeeeeecCCCCCC
Q psy1222 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEE---NGAQEARLLGLVMVPGQHIPA 60 (60)
Q Consensus 1 l~dgR~~~G~l~~~D~~~NlvL~~~~E~~~~~~~~~~~~---~~~~~~r~lG~v~irG~~Iv~ 60 (60)
|+|||.|.|+|+|||+||||||+||+|++...++..+.. ......|.+|+++|||+||++
T Consensus 46 Lk~gr~~~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~v~IRG~nVv~ 108 (118)
T 1b34_B 46 CRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIV 108 (118)
T ss_dssp ETTSCEEEEEEEEECTTCCEEEEEEEEC-------------------CEEEEEEEECGGGEEE
T ss_pred ECCCcEEEEEEEEeCCceEEEEeCEEEEEecccccccccccccccccccCcCeEEEcCCEEEE
Confidence 589999999999999999999999999986543221100 012347889999999999863
No 9
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=99.80 E-value=1.8e-20 Score=101.05 Aligned_cols=48 Identities=17% Similarity=0.311 Sum_probs=43.8
Q ss_pred CCCCceEEEEEEeecCCCceEecccccccCccccccccccchhhheeeeeeeecCCCCC
Q psy1222 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHIP 59 (60)
Q Consensus 1 l~dgR~~~G~l~~~D~~~NlvL~~~~E~~~~~~~~~~~~~~~~~~r~lG~v~irG~~Iv 59 (60)
|+|||+|.|+|.|||+|||++|+||+|++.. ...+.+|+++|||+||+
T Consensus 21 l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~-----------~~~~~lg~v~iRG~~I~ 68 (75)
T 1h64_1 21 LKKGFEFRGRLIGYDIHLNVVLADAEMIQDG-----------EVVKRYGKIVIRGDNVL 68 (75)
T ss_dssp ETTSEEEEEEEEEECTTCCEEEEEEEEEETT-----------EEEEEEEEEEECGGGEE
T ss_pred ECCCCEEEEEEEEEeCCCCeEEeeEEEEeeC-----------CceeECCEEEECCCEEE
Confidence 5899999999999999999999999999863 35788999999999986
No 10
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_A
Probab=99.80 E-value=2.7e-20 Score=104.77 Aligned_cols=49 Identities=20% Similarity=0.285 Sum_probs=43.7
Q ss_pred CCCCceEEEEEEeecCCCceEecccccccCccccccccccchhhheeeeeeeecCCCCC
Q psy1222 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHIP 59 (60)
Q Consensus 1 l~dgR~~~G~l~~~D~~~NlvL~~~~E~~~~~~~~~~~~~~~~~~r~lG~v~irG~~Iv 59 (60)
|+|||+|.|+|+|||+||||||+||+|++.. ....+.+|+++|||+||+
T Consensus 37 Lk~gr~~~G~L~gfD~~mNlvL~d~~E~~~~----------~~~~~~lg~v~IRG~nI~ 85 (94)
T 4emk_A 37 MKSEREFAGTLVGFDDYVNIVLKDVTEYDTV----------TGVTEKHSEMLLNGNGMC 85 (94)
T ss_dssp ESSSEEEEEEEEEECTTCCEEEEEEEEEETT----------TCCEEEEEEEEECSTTEE
T ss_pred ECCCcEEEEEEEEEcccCCeEeeeEEEEecC----------CCcEeEcCEEEEcCCEEE
Confidence 5899999999999999999999999999842 135788999999999986
No 11
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B
Probab=99.79 E-value=5.7e-20 Score=99.32 Aligned_cols=49 Identities=20% Similarity=0.403 Sum_probs=43.7
Q ss_pred CCCCceEEEEEEeecCCCceEecccccccCccccccccccchhhheeeeeeeecCCCCCC
Q psy1222 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHIPA 60 (60)
Q Consensus 1 l~dgR~~~G~l~~~D~~~NlvL~~~~E~~~~~~~~~~~~~~~~~~r~lG~v~irG~~Iv~ 60 (60)
|+|||+|.|+|.|||+|||++|+||+|+... ...+.+|+++|||+||++
T Consensus 21 Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~~-----------~~~~~lg~v~iRG~~I~~ 69 (75)
T 4emk_B 21 LSSGVDYKGILSCLDGYMNLALERTEEYVNG-----------KKTNVYGDAFIRGNNVLY 69 (75)
T ss_dssp CTTSCEEEEEEEEECTTCEEEEEEEEEEETT-----------EEEEEEEEEEEEGGGSSE
T ss_pred EcCCcEEEEEEEEEcCcceEEEccEEEEecC-----------CcccEecEEEEcCCeEEE
Confidence 6899999999999999999999999998742 246889999999999973
No 12
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} SCOP: b.38.1.1
Probab=99.79 E-value=3.1e-20 Score=101.54 Aligned_cols=48 Identities=19% Similarity=0.385 Sum_probs=43.7
Q ss_pred CCCCceEEEEEEeecCCCceEecccccccCccccccccccchhhheeeeeeeecCCCCC
Q psy1222 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHIP 59 (60)
Q Consensus 1 l~dgR~~~G~l~~~D~~~NlvL~~~~E~~~~~~~~~~~~~~~~~~r~lG~v~irG~~Iv 59 (60)
|+|||+|.|+|+|||+|||++|+||+|++.. ...+.+|+++|||++|+
T Consensus 26 l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~-----------~~~~~lg~v~iRG~~I~ 73 (81)
T 1th7_A 26 LKGNKEVRGMLRSYDQHMNLVLSDSEEIQSD-----------GSGKKLGTIVIRGDNVI 73 (81)
T ss_dssp ETTTEEEEEEEEEECTTCCEEEEEEEEECSS-----------SCEEEEEEEEECGGGEE
T ss_pred EcCCcEEEEEEEEEcCCCCEEEccEEEEecC-----------CceeECCEEEECCCEEE
Confidence 5899999999999999999999999999863 25688999999999986
No 13
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*
Probab=99.79 E-value=3.5e-20 Score=100.27 Aligned_cols=48 Identities=25% Similarity=0.357 Sum_probs=43.8
Q ss_pred CCCCceEEEEEEeecCCCceEecccccccCccccccccccchhhheeeeeeeecCCCCC
Q psy1222 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHIP 59 (60)
Q Consensus 1 l~dgR~~~G~l~~~D~~~NlvL~~~~E~~~~~~~~~~~~~~~~~~r~lG~v~irG~~Iv 59 (60)
|+|||+|.|+|.|||+|||++|+||+|++.. ...+.+|+++|||++|+
T Consensus 21 L~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~-----------~~~~~lg~v~iRG~~I~ 68 (77)
T 1i4k_A 21 LKGGREFRGTLDGYDIHMNLVLLDAEEIQNG-----------EVVRKVGSVVIRGDTVV 68 (77)
T ss_dssp ETTSCEEEEEEEEECTTCCEEEEEEEEEETT-----------EEEEEEEEEEECGGGEE
T ss_pred EcCCCEEEEEEEEEcCCCCeEEeeEEEEecC-----------CcEeECCEEEECCCEEE
Confidence 5899999999999999999999999999864 35788999999999986
No 14
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A
Probab=99.78 E-value=5.1e-20 Score=101.18 Aligned_cols=48 Identities=25% Similarity=0.397 Sum_probs=43.8
Q ss_pred CCCCceEEEEEEeecCCCceEecccccccCccccccccccchhhheeeeeeeecCCCCC
Q psy1222 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHIP 59 (60)
Q Consensus 1 l~dgR~~~G~l~~~D~~~NlvL~~~~E~~~~~~~~~~~~~~~~~~r~lG~v~irG~~Iv 59 (60)
|+|||+|.|+|.|||+|||++|+||+|++.. ...+.+|+++|||++|+
T Consensus 32 Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~~-----------~~~~~lg~v~IRG~~I~ 79 (83)
T 1mgq_A 32 LKGDREFRGVLKSFDLHMNLVLNDAEELEDG-----------EVTRRLGTVLIRGDNIV 79 (83)
T ss_dssp ETTTEEEEEEEEEECTTCCEEEEEEEEEETT-----------EEEEEEEEEEECGGGEE
T ss_pred EcCCcEEEEEEEEECCCceeEEccEEEEecC-----------CcccCCCEEEECCCEEE
Confidence 5899999999999999999999999999863 35788999999999986
No 15
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown F; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1
Probab=99.78 E-value=8.3e-20 Score=98.95 Aligned_cols=48 Identities=25% Similarity=0.349 Sum_probs=43.4
Q ss_pred CCCC-ceEEEEEEeecCCCceEecccccccCccccccccccchhhheeeeeeeecCCCCC
Q psy1222 1 MTDG-RVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHIP 59 (60)
Q Consensus 1 l~dg-R~~~G~l~~~D~~~NlvL~~~~E~~~~~~~~~~~~~~~~~~r~lG~v~irG~~Iv 59 (60)
|+|| |++.|+|+|||+|||++|+||+|++.. ...+.+|+++|||+||+
T Consensus 22 lk~g~~~~~G~L~~~D~~mNlvL~d~~e~~~~-----------~~~~~lg~v~iRG~nI~ 70 (77)
T 1ljo_A 22 MKGEENQLVGKLEGVDDYMNLYLTNAMECKGE-----------EKVRSLGEIVLRGNNVV 70 (77)
T ss_dssp ETTCSSEEEEEEEEECTTCCEEEEEEEEEETT-----------EEEEEEEEEEECGGGEE
T ss_pred EeCCCEEEEEEEEEECCcceEEEeeEEEEecC-----------CcEeECCeEEEeCCeEE
Confidence 5799 999999999999999999999999852 25788999999999986
No 16
>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics, structural genomics consortium, SGC, DNA binding protein; 2.14A {Cryptosporidium parvum} SCOP: b.38.1.1 PDB: 3pgg_A
Probab=99.77 E-value=5.3e-20 Score=107.22 Aligned_cols=60 Identities=18% Similarity=0.220 Sum_probs=43.7
Q ss_pred CCCCceEEEEEEeecCCCceEecccccccCccccccccc-c---chhhheeeeeeeecCCCCCC
Q psy1222 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEE-N---GAQEARLLGLVMVPGQHIPA 60 (60)
Q Consensus 1 l~dgR~~~G~l~~~D~~~NlvL~~~~E~~~~~~~~~~~~-~---~~~~~r~lG~v~irG~~Iv~ 60 (60)
|+|||+|.|+|+|||+||||||+||+|++.........+ . .....+.+|+++|||++|++
T Consensus 45 Lk~Gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~g~~~~~~~~r~lG~v~IRG~nVv~ 108 (121)
T 2fwk_A 45 MKGDKEFSGVLRGFDEYVNMVLDDVQEYGFKADEEDISGGNKKLKRVMVNRLETILLSGNNVAM 108 (121)
T ss_dssp ETTTEEECCEEEEECTTCCEEEESCCEEEC---------------CEECCCCSEEEECGGGEEE
T ss_pred ECCCcEEEEEEEEEcccCCeEeceEEEEEeccccccccccCcccccccceEcceEEECCCEEEE
Confidence 589999999999999999999999999986421100000 0 01127899999999999863
No 17
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet I heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB: 1lnx_A*
Probab=99.77 E-value=1.1e-19 Score=99.42 Aligned_cols=47 Identities=19% Similarity=0.323 Sum_probs=42.3
Q ss_pred CCCCceEEEEEEeecCCCceEecccccccCccccccccccchhhheeeeeeeecCCCCC
Q psy1222 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHIP 59 (60)
Q Consensus 1 l~dgR~~~G~l~~~D~~~NlvL~~~~E~~~~~~~~~~~~~~~~~~r~lG~v~irG~~Iv 59 (60)
|+|||+|.|+|+|||+||||+|+||+|+ . ....+.+|+++|||++|+
T Consensus 28 l~~g~~~~G~L~~~D~~mNlvL~d~~e~-~-----------~~~~~~lg~v~iRG~~I~ 74 (81)
T 1i8f_A 28 LRDSHEIRGILRSFDQHVNLLLEDAEEI-I-----------DGNVYKRGTMVVRGENVL 74 (81)
T ss_dssp EGGGEEEEEEEEEECTTCCEEEEEEEEE-E-----------TTEEEEEEEEEECGGGEE
T ss_pred EcCCcEEEEEEEEEcCCCeeEEccEEEE-c-----------CCcccCCCEEEECCCEEE
Confidence 5799999999999999999999999999 2 135789999999999986
No 18
>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_F 2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F
Probab=99.75 E-value=3.9e-19 Score=98.43 Aligned_cols=48 Identities=21% Similarity=0.284 Sum_probs=42.8
Q ss_pred CCCCceEEEEEEeecCCCceEecccccccCccccccccccchhhheeeeeeeecCCCCC
Q psy1222 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHIP 59 (60)
Q Consensus 1 l~dgR~~~G~l~~~D~~~NlvL~~~~E~~~~~~~~~~~~~~~~~~r~lG~v~irG~~Iv 59 (60)
|+|||+|.|+|+|||+||||+|++|+|+... ...+.+|+++|||+||+
T Consensus 23 Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~g-----------~~~~~lg~v~IRG~nI~ 70 (86)
T 3s6n_F 23 LKWGMEYKGYLVSVDGYMNMQLANTEEYIDG-----------ALSGHLGEVLIRCNNVL 70 (86)
T ss_dssp ETTSCEEEEEEEEECTTCCEEEEEEEEEETT-----------EEEEEESSEEECGGGEE
T ss_pred EcCCeEEEEEEEEEcCceEEEEeeEEEEcCC-----------ceeeEccEEEEeCCeEE
Confidence 5899999999999999999999999998642 24678999999999986
No 19
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F; heptamer, translation; 2.80A {Saccharomyces cerevisiae} SCOP: b.38.1.1 PDB: 1n9s_A
Probab=99.74 E-value=6.2e-19 Score=98.92 Aligned_cols=48 Identities=19% Similarity=0.273 Sum_probs=42.9
Q ss_pred CCCC-ceEEEEEEeecCCCceEecccccccCccccccccccchhhheeeeeeeecCCCCC
Q psy1222 1 MTDG-RVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHIP 59 (60)
Q Consensus 1 l~dg-R~~~G~l~~~D~~~NlvL~~~~E~~~~~~~~~~~~~~~~~~r~lG~v~irG~~Iv 59 (60)
|+|| |+|.|+|+|||+||||+|+||+|++.. ...+.+|+++|||++|+
T Consensus 38 Lk~g~~~~~G~L~~~D~~MNlvL~d~~E~~~~-----------~~~~~lg~v~IRG~nI~ 86 (93)
T 1n9r_A 38 LKFNSTEYRGTLVSTDNYFNLQLNEAEEFVAG-----------VSHGTLGEIFIRCNNVL 86 (93)
T ss_dssp ESSTTEEEEEEEEECCTTTCEEEEEEEEEETT-----------EEEEECCSEEECGGGEE
T ss_pred EcCCCEEEEEEEEEEccccEEEEeeEEEEcCC-----------CeEeEcCEEEEcCCeEE
Confidence 5799 999999999999999999999999742 25678999999999986
No 20
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe}
Probab=99.71 E-value=4.8e-18 Score=97.17 Aligned_cols=49 Identities=16% Similarity=0.195 Sum_probs=43.2
Q ss_pred CCCCceEEEEEEeecCCCceEecccccccCccccccccccchhhheeeeeeeecCCCCC
Q psy1222 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHIP 59 (60)
Q Consensus 1 l~dgR~~~G~l~~~D~~~NlvL~~~~E~~~~~~~~~~~~~~~~~~r~lG~v~irG~~Iv 59 (60)
|++||+|.|+|.|||+||||+|+||+|+.... +..+.+|+++|||++|+
T Consensus 33 Lk~G~~~~G~L~~~D~~MNlvL~d~~e~~~dg----------~~~~~lg~v~IRG~nI~ 81 (105)
T 4emh_A 33 LKNGETFNGHLENCDNYMNLTLREVIRTMPDG----------DKFFRLPECYIRGNNIK 81 (105)
T ss_dssp ETTSCEEEEEEEEECTTCCEEEEEEEEECTTS----------CEEEEEEEEEECGGGEE
T ss_pred ECCCCEEEEEEEEEcCCceEEEEEEEEEccCC----------ceeeEcCeEEEeCCeEE
Confidence 58999999999999999999999999986432 24678999999999985
No 21
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1
Probab=99.70 E-value=1.1e-17 Score=90.38 Aligned_cols=48 Identities=17% Similarity=0.228 Sum_probs=42.8
Q ss_pred CCCCceEEEEEEeecCCCceEecccccccCccccccccccchhhheeeeeeeecCCCCC
Q psy1222 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHIP 59 (60)
Q Consensus 1 l~dgR~~~G~l~~~D~~~NlvL~~~~E~~~~~~~~~~~~~~~~~~r~lG~v~irG~~Iv 59 (60)
|++|++|.|+|.|||+|||++|+||+|+... ...+.+|.++|||++|.
T Consensus 22 Lk~g~~~~G~L~~~D~~MNl~L~~~~e~~~~-----------~~~~~lg~v~IRG~nI~ 69 (75)
T 1d3b_A 22 TNTGEVYRGKLIEAEDNMNCQMSNITVTYRD-----------GRVAQLEQVYIRGCKIR 69 (75)
T ss_dssp ETTSCEEEEEEEEECTTCCEEEEEEEEECTT-----------SCEEEEEEEEECGGGEE
T ss_pred ECCCcEEEEEEEEEccceeEEEEeEEEECCC-----------CcEEEcCeEEEeCCEEE
Confidence 5899999999999999999999999999743 14678999999999985
No 22
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=99.69 E-value=1.2e-17 Score=97.05 Aligned_cols=48 Identities=23% Similarity=0.285 Sum_probs=42.8
Q ss_pred CCCCceEEEEEEeecCCCceEecccccccCccccccccccchhhheeeeeeeecCCCCC
Q psy1222 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHIP 59 (60)
Q Consensus 1 l~dgR~~~G~l~~~D~~~NlvL~~~~E~~~~~~~~~~~~~~~~~~r~lG~v~irG~~Iv 59 (60)
|++|++|.|+|.+||+||||+|+||+|+... ...+.+|+++|||+||+
T Consensus 19 Lk~g~~~~G~L~~~D~~MNlvL~d~~e~~~~-----------~~~~~lg~v~IRG~nI~ 66 (119)
T 1b34_A 19 LKNGTQVHGTITGVDVSMNTHLKAVKMTLKN-----------REPVQLETLSIRGNNIR 66 (119)
T ss_dssp ETTCCEEEEEEEEECTTCCEEEEEEEEECTT-----------SCCEEEEEEEECGGGEE
T ss_pred EcCCCEEEEEEEEEcccceEEeccEEEecCC-----------CceeEcceEEEcCCeEE
Confidence 5799999999999999999999999998642 24588999999999985
No 23
>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like P; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} SCOP: b.38.1.1
Probab=99.62 E-value=2.7e-16 Score=92.73 Aligned_cols=44 Identities=18% Similarity=0.329 Sum_probs=39.8
Q ss_pred CCCCceEEEEEEeecCCCceEecccccccCccccccccccchhhheeeeeeeecCCCCC
Q psy1222 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHIP 59 (60)
Q Consensus 1 l~dgR~~~G~l~~~D~~~NlvL~~~~E~~~~~~~~~~~~~~~~~~r~lG~v~irG~~Iv 59 (60)
|+|||++.|+|.|||+||||+|+||+|+. .+.+|+++|||+||+
T Consensus 17 Lk~G~~~~G~L~~~D~~MNlvL~d~~E~~---------------~~~lg~v~IRG~nI~ 60 (130)
T 1m5q_A 17 LSNGEVYKGVLHAVDNQLNIVLANASNKA---------------GEKFNRVFIMYRYIV 60 (130)
T ss_dssp ETTSCEEEEEEEEECTTCCEEEEEEECTT---------------CCEEEEEEECGGGEE
T ss_pred ECCCcEEEEEEEEEcccceeEEeeEEEEc---------------CCEeceEEEeCCeEE
Confidence 58999999999999999999999999983 146899999999986
No 24
>2y9a_D Small nuclear ribonucleoprotein SM D3; splicing-RNA complex, PRE-mRNA splicing, spliceosome, snRNP biogenesis, SM site, SM fold, heteromeric heptameric ring; 3.60A {Homo sapiens} PDB: 2y9b_D 2y9c_D 2y9d_D 3pgw_Z* 3cw1_D
Probab=99.59 E-value=8.2e-16 Score=90.24 Aligned_cols=48 Identities=17% Similarity=0.246 Sum_probs=42.6
Q ss_pred CCCCceEEEEEEeecCCCceEecccccccCccccccccccchhhheeeeeeeecCCCCC
Q psy1222 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHIP 59 (60)
Q Consensus 1 l~dgR~~~G~l~~~D~~~NlvL~~~~E~~~~~~~~~~~~~~~~~~r~lG~v~irG~~Iv 59 (60)
|++|++|.|+|.+||.||||+|+||+|+... .+...+|.++|||+||.
T Consensus 22 LknG~~~~G~L~~~D~~MNi~L~dv~e~~~~-----------g~~~~l~~v~IRGnnI~ 69 (126)
T 2y9a_D 22 TNTGEVYRGKLIEAEDNMNCQMSNITVTYRD-----------GRVAQLEQVYIRGSKIR 69 (126)
T ss_dssp ESSCCEEEEEEEEECTTSCEEEEEEEEECTT-----------SCCEEEEEEEECGGGEE
T ss_pred ECCCcEEEEEEEEEcCceEEEEeeEEEEcCC-----------CcEeecccEEEeCCEEE
Confidence 6899999999999999999999999998643 13678999999999985
No 25
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=97.21 E-value=0.00028 Score=38.77 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=23.2
Q ss_pred CCCCceEEEEEEeec-CCCceEeccc
Q psy1222 1 MTDGRVLVGTFLCTD-RDANVILGSC 25 (60)
Q Consensus 1 l~dgR~~~G~l~~~D-~~~NlvL~~~ 25 (60)
+.||+.+.|.|.+|| ...|+||.+|
T Consensus 24 l~dg~~y~G~l~tvDp~s~sIvL~n~ 49 (86)
T 1y96_A 24 ASEKNEYKGWVLTTDPVSANIVLVNF 49 (86)
T ss_dssp ETTTEEEEEEEEEECTTTCCEEEEEE
T ss_pred EcCCCEEEEEEEEECCCceEEEEeec
Confidence 479999999999999 7789999998
No 26
>1u1s_A HFQ protein; SM-like bacterial protein, riken structural genomics/proteomics initiative, RSGI, structural genomics, RNA binding protein; 1.60A {Pseudomonas aeruginosa} SCOP: b.38.1.2 PDB: 1u1t_A 3qui_A* 3m4g_A 3inz_A
Probab=95.13 E-value=0.018 Score=31.22 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=19.3
Q ss_pred CCCCceEEEEEEeecCCCceEecc
Q psy1222 1 MTDGRVLVGTFLCTDRDANVILGS 24 (60)
Q Consensus 1 l~dgR~~~G~l~~~D~~~NlvL~~ 24 (60)
|.+|-.+.|.+.+||+|+ ++|++
T Consensus 26 L~NG~~l~G~I~~fD~ft-VlL~~ 48 (82)
T 1u1s_A 26 LVNGIKLQGQIESFDQFV-ILLKN 48 (82)
T ss_dssp ETTSCEEEEEEEEECSSE-EEEES
T ss_pred EeCCcEEEEEEEEEcceE-EEEec
Confidence 568999999999999999 55553
No 27
>2ylb_A Protein HFQ; RNA-binding protein, LSM protein, RNA chaperone; 1.15A {Salmonella enterica subsp} PDB: 2yht_A 1hk9_A 2ylc_A* 3gib_A* 3rer_A* 3qo3_A* 3res_A*
Probab=94.92 E-value=0.023 Score=30.18 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=19.5
Q ss_pred CCCCceEEEEEEeecCCCceEecc
Q psy1222 1 MTDGRVLVGTFLCTDRDANVILGS 24 (60)
Q Consensus 1 l~dgR~~~G~l~~~D~~~NlvL~~ 24 (60)
|.+|-.+.|.+.+||+|+ +.|++
T Consensus 28 L~nG~~l~G~I~~fD~f~-vlL~~ 50 (74)
T 2ylb_A 28 LVNGIKLQGQIESFDQFV-ILLKN 50 (74)
T ss_dssp ETTSCEEEEEEEEECSSE-EEEES
T ss_pred EeCCCEEEEEEEEECCcE-EEEEC
Confidence 468999999999999999 55654
No 28
>3sb2_A Protein HFQ; SM-like, RNA chaperone, chaperone; 2.63A {Herbaspirillum seropedicae} SCOP: b.38.1.2
Probab=94.84 E-value=0.025 Score=30.48 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=18.8
Q ss_pred CCCCceEEEEEEeecCCCceEec
Q psy1222 1 MTDGRVLVGTFLCTDRDANVILG 23 (60)
Q Consensus 1 l~dgR~~~G~l~~~D~~~NlvL~ 23 (60)
|.+|-.+.|.+.+||+|+ ++|+
T Consensus 27 LvnG~~L~G~I~~fD~f~-VlL~ 48 (79)
T 3sb2_A 27 LVNGIKLQGHVESFDQYV-VLLR 48 (79)
T ss_dssp ETTSCEEEEEEEEECSSE-EEEE
T ss_pred EeCCCEEEEEEEEECCcE-EEEE
Confidence 568999999999999999 5554
No 29
>2y90_A Protein HFQ; RNA-binding protein, SM-like, RNA chaperone; 2.25A {Escherichia coli} PDB: 3qhs_A
Probab=94.09 E-value=0.044 Score=30.92 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=19.1
Q ss_pred CCCCceEEEEEEeecCCCceEecc
Q psy1222 1 MTDGRVLVGTFLCTDRDANVILGS 24 (60)
Q Consensus 1 l~dgR~~~G~l~~~D~~~NlvL~~ 24 (60)
|.+|-.+.|++.+||+|+ |+|.+
T Consensus 28 LvNG~~L~G~I~~fD~f~-VlL~~ 50 (104)
T 2y90_A 28 LVNGIKLQGQIESFDQFV-ILLKN 50 (104)
T ss_dssp ETTSCEEEEEEEEECSSE-EEEES
T ss_pred EeCCCEEEEEEEEECCcE-EEEEC
Confidence 468999999999999999 55553
No 30
>3ahu_A Protein HFQ; SM-like motif, protein-RNA complex, translation-RNA complex; 2.20A {Bacillus subtilis} PDB: 3hsb_A
Probab=93.02 E-value=0.092 Score=28.16 Aligned_cols=22 Identities=27% Similarity=0.282 Sum_probs=18.5
Q ss_pred CCCCceEEEEEEeecCCCceEec
Q psy1222 1 MTDGRVLVGTFLCTDRDANVILG 23 (60)
Q Consensus 1 l~dgR~~~G~l~~~D~~~NlvL~ 23 (60)
|.+|-.+.|.+.+||+|+ ++|+
T Consensus 30 L~nG~~l~G~I~~fD~f~-VlL~ 51 (78)
T 3ahu_A 30 LLNGFQLRGQVKGFDNFT-VLLE 51 (78)
T ss_dssp ETTSCEEEEEEEEECSSE-EEEE
T ss_pred EeCCeEEEEEEEEEcceE-EEEE
Confidence 568999999999999999 4443
No 31
>2qtx_A Uncharacterized protein MJ1435; HFQ, SM, RNA-binding protein, sRNA, translational regulation, RNA binding protein; 2.50A {Methanocaldococcus jannaschii}
Probab=92.39 E-value=0.13 Score=27.15 Aligned_cols=22 Identities=14% Similarity=0.271 Sum_probs=18.4
Q ss_pred CCCCceEEEEEEeecCCCceEec
Q psy1222 1 MTDGRVLVGTFLCTDRDANVILG 23 (60)
Q Consensus 1 l~dgR~~~G~l~~~D~~~NlvL~ 23 (60)
|.+|-.+.|.+.+||+|+ ++|+
T Consensus 32 L~NG~~l~G~I~~fD~ft-Vll~ 53 (71)
T 2qtx_A 32 LRNGEVLDAEVTGVSNYE-IMVK 53 (71)
T ss_dssp ETTSCEEEEEEEEECSSE-EEEE
T ss_pred EeCCeEEEEEEEEEcceE-EEEE
Confidence 468999999999999999 4443
No 32
>1kq1_A HFQ, HOST factor for Q beta; hexamer, RNA binding protein, translational regulator, SM motif; 1.55A {Staphylococcus aureus} SCOP: b.38.1.2 PDB: 1kq2_A
Probab=90.52 E-value=0.25 Score=26.28 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=18.4
Q ss_pred CCCCceEEEEEEeecCCCceEec
Q psy1222 1 MTDGRVLVGTFLCTDRDANVILG 23 (60)
Q Consensus 1 l~dgR~~~G~l~~~D~~~NlvL~ 23 (60)
|.+|-.+.|.+.+||+|+ ++|.
T Consensus 26 L~nG~~l~G~I~~fD~f~-VlL~ 47 (77)
T 1kq1_A 26 FLNGFQMKGVIEEYDKYV-VSLN 47 (77)
T ss_dssp ETTSCEEEEEEEEECSSE-EEEE
T ss_pred EeCCCEEEEEEEEECCcE-EEEE
Confidence 468999999999999999 4444
No 33
>1x4r_A PARP14 protein; WWE domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=83.43 E-value=0.069 Score=29.85 Aligned_cols=20 Identities=20% Similarity=0.190 Sum_probs=17.5
Q ss_pred EEEEeecCCCceEecccccc
Q psy1222 9 GTFLCTDRDANVILGSCGEY 28 (60)
Q Consensus 9 G~l~~~D~~~NlvL~~~~E~ 28 (60)
|++.+||+..|+.|++|.-.
T Consensus 35 ~~~~~FDk~TNl~LEeA~~~ 54 (99)
T 1x4r_A 35 NITQCFDKMTNMKLEVAWKA 54 (99)
T ss_dssp SCEEECCTTHHHHHHHHHHT
T ss_pred CeEeechHHHHHHHHHHHHc
Confidence 67899999999999999743
No 34
>3hfo_A SSR3341 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 1.30A {Synechocystis SP}
Probab=80.39 E-value=2.2 Score=22.27 Aligned_cols=24 Identities=29% Similarity=0.318 Sum_probs=19.4
Q ss_pred CCCCceEEEEEEeecCCCceEeccc
Q psy1222 1 MTDGRVLVGTFLCTDRDANVILGSC 25 (60)
Q Consensus 1 l~dgR~~~G~l~~~D~~~NlvL~~~ 25 (60)
|.+|-.++|.+.-+|.++ +-|.+.
T Consensus 28 L~tG~~l~G~i~WQD~~c-l~L~~~ 51 (70)
T 3hfo_A 28 LLTGDSLFGTIRWQDTDG-LGLVDD 51 (70)
T ss_dssp ETTSCEEEEEEEEECSSE-EEEECT
T ss_pred ecCCCEEEEEEEEeCCCE-EEEEcC
Confidence 468999999999999999 444444
No 35
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=69.64 E-value=4.7 Score=20.32 Aligned_cols=30 Identities=27% Similarity=0.323 Sum_probs=22.0
Q ss_pred CCCceEEEEEEeecCCC---ceEecccccccCc
Q psy1222 2 TDGRVLVGTFLCTDRDA---NVILGSCGEYLSP 31 (60)
Q Consensus 2 ~dgR~~~G~l~~~D~~~---NlvL~~~~E~~~~ 31 (60)
+|||.|-|++..+|+.. =+...|-.++|..
T Consensus 15 sDG~fYlGtI~~V~~~~~~clV~F~D~s~~W~~ 47 (58)
T 4hcz_A 15 TDGLLYLGTIKKVDSAREVCLVQFEDDSQFLVL 47 (58)
T ss_dssp TTSCEEEEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred cCCCEEeEEEEEEecCCCEEEEEEcCCCeEEEE
Confidence 69999999999988763 3444666666643
No 36
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=68.98 E-value=7.5 Score=20.19 Aligned_cols=30 Identities=27% Similarity=0.379 Sum_probs=22.1
Q ss_pred CCCceEEEEEEeecCCCceEe-cccccccCc
Q psy1222 2 TDGRVLVGTFLCTDRDANVIL-GSCGEYLSP 31 (60)
Q Consensus 2 ~dgR~~~G~l~~~D~~~NlvL-~~~~E~~~~ 31 (60)
+||+.|.|++....+..=+|. +|-.|+|..
T Consensus 27 ~DG~fYLGtIVd~~~~~ClV~FeD~S~~Wv~ 57 (69)
T 2xk0_A 27 NDGRFYLGTIIDQTSDQYLIRFDDQSEQWCE 57 (69)
T ss_dssp TTSCEEEEEEEEECSSCEEEEETTCCEEEEC
T ss_pred cCCCEEEEEEEecCCceEEEEecCCcceeee
Confidence 699999999977766655554 666676654
No 37
>1ycy_A Conserved hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative; 2.80A {Pyrococcus furiosus} SCOP: b.38.1.4
Probab=65.16 E-value=4.4 Score=20.94 Aligned_cols=27 Identities=15% Similarity=0.278 Sum_probs=20.9
Q ss_pred CceEEEEEEeecCCCceEecccccccCc
Q psy1222 4 GRVLVGTFLCTDRDANVILGSCGEYLSP 31 (60)
Q Consensus 4 gR~~~G~l~~~D~~~NlvL~~~~E~~~~ 31 (60)
...|+|+|.-||... |+|.|++.+.-.
T Consensus 26 ehSFtGiledFDeEv-iLL~dV~D~~GN 52 (71)
T 1ycy_A 26 DHSFTGTLEDFDEEV-ILLKDVVDVIGN 52 (71)
T ss_dssp ---CEEEEEEECSSE-EEEEEEEETTEE
T ss_pred cceeeeehhhcCcce-eehhhHHHHhcc
Confidence 357999999999987 888999888654
No 38
>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase inhibitor complex; HET: BS5; 1.70A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A
Probab=64.25 E-value=8.5 Score=24.14 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=21.1
Q ss_pred CCceEEEEEEeecCCCceEecccc
Q psy1222 3 DGRVLVGTFLCTDRDANVILGSCG 26 (60)
Q Consensus 3 dgR~~~G~l~~~D~~~NlvL~~~~ 26 (60)
+|..+.|++.++|....|+|....
T Consensus 233 ~~~~~~G~~~gId~~G~L~v~~~~ 256 (270)
T 3rux_A 233 GGQDVVGIARDIDDQGRLCLDVGG 256 (270)
T ss_dssp TSCEEEEEEEEECTTSCEEEEETT
T ss_pred CCeEEEEEEEEECCCCeEEEEECC
Confidence 578899999999999999997653
No 39
>3hfn_A ASL2047 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 2.31A {Nostoc SP}
Probab=61.94 E-value=5.7 Score=20.73 Aligned_cols=24 Identities=21% Similarity=0.403 Sum_probs=18.9
Q ss_pred CCCCceEEEEEEeecCCCceEeccc
Q psy1222 1 MTDGRVLVGTFLCTDRDANVILGSC 25 (60)
Q Consensus 1 l~dgR~~~G~l~~~D~~~NlvL~~~ 25 (60)
|.+|-.++|++.-+|.++ +-|.+.
T Consensus 30 L~tGd~l~G~i~WQD~~c-l~L~~~ 53 (72)
T 3hfn_A 30 LVTGDAITGRVLWQDPTC-VCIADE 53 (72)
T ss_dssp ETTSCEEEEEEEEECSSE-EEEEC-
T ss_pred ecCCCEEEEEEEEECCCE-EEEEcC
Confidence 468999999999999999 444443
No 40
>4a53_A EDC3; RNA binding protein; NMR {Schizosaccharomyces pombe} PDB: 4a54_A
Probab=58.58 E-value=8.2 Score=22.22 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=21.5
Q ss_pred CCCCceEEEEEEeecCCCceEe--ccccc
Q psy1222 1 MTDGRVLVGTFLCTDRDANVIL--GSCGE 27 (60)
Q Consensus 1 l~dgR~~~G~l~~~D~~~NlvL--~~~~E 27 (60)
|+||..+.|++..+|.. +|.| ++|..
T Consensus 19 LkDgs~~qG~I~~vd~k-~LtL~~~~a~~ 46 (125)
T 4a53_A 19 LNNDSKARGVITNFDSS-NSILQLRLAND 46 (125)
T ss_dssp ETTSCEEEEEEEEEETT-TTEEEEEETTT
T ss_pred ECCCCEeeEEEEeecCC-eeEEecccccc
Confidence 57999999999999855 5888 88854
No 41
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=53.83 E-value=13 Score=19.10 Aligned_cols=29 Identities=17% Similarity=0.200 Sum_probs=20.4
Q ss_pred CCCceEEEEEEeecCC---CceEecccccccC
Q psy1222 2 TDGRVLVGTFLCTDRD---ANVILGSCGEYLS 30 (60)
Q Consensus 2 ~dgR~~~G~l~~~D~~---~NlvL~~~~E~~~ 30 (60)
+||+.|.|++..+++. +=+-..|..++|.
T Consensus 25 tDGl~Y~gtI~~V~~~~gtC~V~F~D~s~~w~ 56 (66)
T 2eqj_A 25 SDGLFYLGTIKKINILKQSCFIIFEDSSKSWV 56 (66)
T ss_dssp TTSCEEEEEEEEEETTTTEEEEEETTTEEEEE
T ss_pred ccCcEEEeEEEEEccCCcEEEEEEccCCEEEE
Confidence 6999999999999975 2233345555543
No 42
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=51.65 E-value=9.7 Score=20.24 Aligned_cols=29 Identities=28% Similarity=0.373 Sum_probs=21.0
Q ss_pred CCCceEEEEEEeecCC---CceEecccccccC
Q psy1222 2 TDGRVLVGTFLCTDRD---ANVILGSCGEYLS 30 (60)
Q Consensus 2 ~dgR~~~G~l~~~D~~---~NlvL~~~~E~~~ 30 (60)
+||+.|-|++.-+|.. +=+...|-.|+|.
T Consensus 38 sDGlfYLGTI~kV~~~~e~ClV~F~D~S~~W~ 69 (79)
T 2m0o_A 38 TDGLLYLGTIKKVDSAREVCLVQFEDDSQFLV 69 (79)
T ss_dssp TTSCCCEEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred cCCCEEeEEEEEeccCCCEEEEEEcCCCeEEE
Confidence 6999999999988864 3344466666654
No 43
>2wr8_A Putative uncharacterized protein PH0463; transferase, SAM, SAM hydroxide adenosyltransferase (DUF-62) water activation; HET: SAH; 1.77A {Pyrococcus horikoshii} PDB: 1wu8_A*
Probab=48.21 E-value=18 Score=22.88 Aligned_cols=22 Identities=32% Similarity=0.312 Sum_probs=18.0
Q ss_pred CceEEEEEEeecCCCceEeccc
Q psy1222 4 GRVLVGTFLCTDRDANVILGSC 25 (60)
Q Consensus 4 gR~~~G~l~~~D~~~NlvL~~~ 25 (60)
+..+.|.+.-+|.|.|++..=.
T Consensus 171 ~~~i~g~V~~iD~FGN~iTnI~ 192 (259)
T 2wr8_A 171 GDVWILKVIYIDDFGNVILNLE 192 (259)
T ss_dssp TTEEEEEEEEECTTCCEEESCC
T ss_pred CCeEEEEEEEEcccCChhhcCC
Confidence 3458899999999999997643
No 44
>2zbv_A Uncharacterized conserved protein; NPPSFA, national project protein structural and functional analyses; HET: ADN; 2.05A {Thermotoga maritima} PDB: 2zbu_A*
Probab=46.91 E-value=19 Score=22.78 Aligned_cols=21 Identities=19% Similarity=0.185 Sum_probs=17.4
Q ss_pred CceEEEEEEeecCCCceEecc
Q psy1222 4 GRVLVGTFLCTDRDANVILGS 24 (60)
Q Consensus 4 gR~~~G~l~~~D~~~NlvL~~ 24 (60)
+..+.|.+.-+|.|.|++..=
T Consensus 167 ~~~i~g~V~~iD~FGN~iTnI 187 (263)
T 2zbv_A 167 NEKVIGEVAIVDTFGNVSTNI 187 (263)
T ss_dssp TTEEEEEEEEECTTCCEEEEE
T ss_pred CCeEEEEEEEEcccCChhhcC
Confidence 345889999999999998753
No 45
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.53 E-value=17 Score=18.48 Aligned_cols=29 Identities=21% Similarity=0.282 Sum_probs=22.0
Q ss_pred CCCceEEEEEEeecCC---CceEecccccccC
Q psy1222 2 TDGRVLVGTFLCTDRD---ANVILGSCGEYLS 30 (60)
Q Consensus 2 ~dgR~~~G~l~~~D~~---~NlvL~~~~E~~~ 30 (60)
+||+.|.|++..+|.. +=+...|..++|.
T Consensus 19 sDGlfYlgtV~kV~~~~~~ClV~FeD~s~~wv 50 (63)
T 2e5q_A 19 TDGLYYLGKIKRVSSSKQSCLVTFEDNSKYWV 50 (63)
T ss_dssp TTSCEEEEEECCCCSTTSEEEEEETTSCEEEE
T ss_pred cCCCEEEEEEEEEecCCCEEEEEEccCceeEE
Confidence 6999999999999854 4444467777665
No 46
>1y96_B Gemin7, SIP3, GEM-associated protein 7; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=46.29 E-value=25 Score=18.90 Aligned_cols=23 Identities=30% Similarity=0.405 Sum_probs=17.6
Q ss_pred CCCceEEEEEEeecCC-CceEecc
Q psy1222 2 TDGRVLVGTFLCTDRD-ANVILGS 24 (60)
Q Consensus 2 ~dgR~~~G~l~~~D~~-~NlvL~~ 24 (60)
.++-.+.|+|.|+|.. .|+..++
T Consensus 37 ~E~t~V~a~F~a~d~d~~~f~Vs~ 60 (85)
T 1y96_B 37 HEGVRVAAHFGATDLDVANFYVSQ 60 (85)
T ss_dssp GGGCEEEEEEEEECTTCCEEEEEE
T ss_pred eCCeEEEEEEEecCcccceeEhhh
Confidence 4567889999999988 4666554
No 47
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=45.69 E-value=22 Score=22.74 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=19.4
Q ss_pred CCceEEEEEEeecCCCceEeccc
Q psy1222 3 DGRVLVGTFLCTDRDANVILGSC 25 (60)
Q Consensus 3 dgR~~~G~l~~~D~~~NlvL~~~ 25 (60)
++..+.|+..++|....|+|...
T Consensus 287 ~~~~~~G~~~gId~~G~Llv~~~ 309 (323)
T 3rkx_A 287 NDKQFKGQAIDLDYDGYLIVRDE 309 (323)
T ss_dssp C-CEEEEEEEEECTTSCEEEEET
T ss_pred CCeEEEEEEEEECCCCEEEEEEC
Confidence 46789999999999999999754
No 48
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=45.17 E-value=22 Score=22.55 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=19.9
Q ss_pred CCceEEEEEEeecCCCceEeccc
Q psy1222 3 DGRVLVGTFLCTDRDANVILGSC 25 (60)
Q Consensus 3 dgR~~~G~l~~~D~~~NlvL~~~ 25 (60)
++..+.|++.++|....|+|...
T Consensus 281 ~~~~~~G~~~gid~~G~L~v~~~ 303 (321)
T 1bia_A 281 GDKEIFGISRGIDKQGALLLEQD 303 (321)
T ss_dssp TTEEEEEEEEEECTTSCEEEEET
T ss_pred CCcEEEEEEEEECCCCeEEEEEC
Confidence 45689999999999999999754
No 49
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}
Probab=45.09 E-value=23 Score=18.96 Aligned_cols=20 Identities=20% Similarity=0.190 Sum_probs=18.5
Q ss_pred eEEEEEEeecCC-CceEeccc
Q psy1222 6 VLVGTFLCTDRD-ANVILGSC 25 (60)
Q Consensus 6 ~~~G~l~~~D~~-~NlvL~~~ 25 (60)
.|+|.+..+|+. .||.|.++
T Consensus 22 vYQG~i~~vd~~~~tItL~~~ 42 (84)
T 2vc8_A 22 VYQGRVSAVDQVSQTISLTRP 42 (84)
T ss_dssp EEEEEEEEEETTTTEEEEEEE
T ss_pred EEEEEEEEeccCCCeEEEehh
Confidence 899999999988 58999999
No 50
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.51 E-value=30 Score=17.83 Aligned_cols=29 Identities=28% Similarity=0.373 Sum_probs=21.3
Q ss_pred CCCceEEEEEEeecCC---CceEecccccccC
Q psy1222 2 TDGRVLVGTFLCTDRD---ANVILGSCGEYLS 30 (60)
Q Consensus 2 ~dgR~~~G~l~~~D~~---~NlvL~~~~E~~~ 30 (60)
+||+.|.|++.-.|.+ +=+...|..+++.
T Consensus 21 sDGlfYlGtV~kV~~~~~~ClV~FeD~s~~wv 52 (68)
T 2e5p_A 21 TDGLLYLGTIKKVDSAREVCLVQFEDDSQFLV 52 (68)
T ss_dssp TTSSEEEEEEEEEETTTTEEEEEETTTEEEEE
T ss_pred cCCcEEEeEEEEEecCCcEEEEEEccCCeeee
Confidence 6999999999999854 3333466666654
No 51
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=37.54 E-value=27 Score=20.35 Aligned_cols=20 Identities=25% Similarity=0.502 Sum_probs=15.5
Q ss_pred CCceEEEEEEeecCCCceEec
Q psy1222 3 DGRVLVGTFLCTDRDANVILG 23 (60)
Q Consensus 3 dgR~~~G~l~~~D~~~NlvL~ 23 (60)
+.+.|.|+|.++|... +.|.
T Consensus 117 g~k~~~G~L~~~~~~~-v~l~ 136 (164)
T 1ib8_A 117 KQKVFEGTLLAFEEDE-LTME 136 (164)
T ss_dssp SCSEEEEEEEEEETTE-EEEE
T ss_pred CceEEEEEEEEEeCCE-EEEE
Confidence 4589999999998764 5553
No 52
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ...
Probab=37.14 E-value=26 Score=21.37 Aligned_cols=21 Identities=19% Similarity=0.107 Sum_probs=17.8
Q ss_pred CceEEEEEEeecCCCceEeccc
Q psy1222 4 GRVLVGTFLCTDRDANVILGSC 25 (60)
Q Consensus 4 gR~~~G~l~~~D~~~NlvL~~~ 25 (60)
+. +.|++.++|....|++...
T Consensus 198 ~~-~~G~~~gId~~G~L~v~~~ 218 (235)
T 2dxu_A 198 GS-FEGIAEDIDDFGRLIIRLD 218 (235)
T ss_dssp -C-CEEEEEEECTTSCEEEECT
T ss_pred Ce-EEEEEEEECCCCEEEEEEC
Confidence 44 8999999999999999754
No 53
>2cw5_A Bacterial fluorinating enzyme homolog; alpha and beta protein (A/B), beta barrel, structural genomics, NPPSFA; 1.94A {Thermus thermophilus}
Probab=37.00 E-value=22 Score=22.52 Aligned_cols=19 Identities=32% Similarity=0.195 Sum_probs=16.3
Q ss_pred EEEEEEeecCCCceEeccc
Q psy1222 7 LVGTFLCTDRDANVILGSC 25 (60)
Q Consensus 7 ~~G~l~~~D~~~NlvL~~~ 25 (60)
+.|.+.-+|.|.|++..=.
T Consensus 174 i~g~V~~iD~FGN~iTnI~ 192 (255)
T 2cw5_A 174 PEGEVLTFDRFGNAITTLL 192 (255)
T ss_dssp SEEEEEEECTTCCEEESBS
T ss_pred cEEEEEEEcccCCceecCC
Confidence 7899999999999987543
No 54
>2vxe_A CG10686-PA; EDC3, CAR-1, P-bodies, decapping, mRNA decay, LSM proteins, translational repression, transcription; NMR {Drosophila melanogaster}
Probab=36.82 E-value=51 Score=17.73 Aligned_cols=53 Identities=13% Similarity=0.209 Sum_probs=32.7
Q ss_pred CceEEEEEEeecCC-CceEecccccccCccccccccccchhhheeeeeeeecCCCC
Q psy1222 4 GRVLVGTFLCTDRD-ANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58 (60)
Q Consensus 4 gR~~~G~l~~~D~~-~NlvL~~~~E~~~~~~~~~~~~~~~~~~r~lG~v~irG~~I 58 (60)
+-.|+|+|...|.. .-+-|.++.-+=.+.... +.........+..++.||..|
T Consensus 23 dIRYeGiL~~In~~~sTi~L~nVrsfGTEgR~~--~~~ipp~~~vy~yIvFrgsDI 76 (88)
T 2vxe_A 23 DIRYEGRLYTVDPQECTIALSSVRSFGTEDRDT--QFQIAPQSQIYDYILFRGSDI 76 (88)
T ss_dssp TEEEEEEEEEEETTTTEEEEEEEEECCCTTTCC--SSCCCCCCSCEEEEEEETTTE
T ss_pred CceEEEEEeeecCcccEEEEEeeeEecCcCCCC--CcccCCCCceeeEEEEccCCc
Confidence 34689999999988 568888876654432111 011112334467888888765
No 55
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A*
Probab=35.24 E-value=30 Score=21.04 Aligned_cols=19 Identities=5% Similarity=0.214 Sum_probs=17.3
Q ss_pred EEEEEEeecCCCceEeccc
Q psy1222 7 LVGTFLCTDRDANVILGSC 25 (60)
Q Consensus 7 ~~G~l~~~D~~~NlvL~~~ 25 (60)
+.|++.++|....|+|...
T Consensus 199 ~~G~~~gId~~G~L~v~~~ 217 (233)
T 2eay_A 199 ITGKLVGLSEKGGALILTE 217 (233)
T ss_dssp EEEEEEEECTTSCEEEEET
T ss_pred EEEEEEEECCCCeEEEEEC
Confidence 8999999999999999754
No 56
>1rqp_A 5'-fluoro-5'-deoxyadenosine synthase; fluorinase, central 7 stranded beta sheets, anti-parallel BE sheets, transferase; HET: SAM; 1.80A {Streptomyces cattleya} SCOP: b.141.1.1 c.132.1.1 PDB: 1rqr_A* 2c2w_A* 2c4t_A* 2c4u_A 2c5b_A* 2c5h_A* 2cbx_A* 2cc2_A* 2v7v_A* 2v7x_A* 2v7w_A* 2v7t_A* 2v7u_A*
Probab=34.57 E-value=34 Score=22.20 Aligned_cols=21 Identities=33% Similarity=0.343 Sum_probs=17.6
Q ss_pred CceEEEEEEeec-CCCceEecc
Q psy1222 4 GRVLVGTFLCTD-RDANVILGS 24 (60)
Q Consensus 4 gR~~~G~l~~~D-~~~NlvL~~ 24 (60)
+..+.|.+.-+| .|.|++..=
T Consensus 199 ~~~i~g~V~~iD~~FGNviTnI 220 (299)
T 1rqp_A 199 GEALVGVVSAIDHPFGNVWTNI 220 (299)
T ss_dssp TTEEEEEEEEEETTTTEEEEEE
T ss_pred CCeEEEEEEEECCCCCCeEecC
Confidence 456889999999 999998653
No 57
>2fb7_A SM-like protein, LSM-14_N (RAP55); DR.13312, BC055387, AAH55387, stronGly BENT five-stranded antiparallel beta- sheet, structural genomics, PSI; NMR {Danio rerio} SCOP: b.38.1.5 PDB: 2vxf_A
Probab=33.70 E-value=60 Score=17.68 Aligned_cols=53 Identities=13% Similarity=0.189 Sum_probs=32.2
Q ss_pred CceEEEEEEeecCC-CceEecccccccCccccccccccchhhheeeeeeeecCCCC
Q psy1222 4 GRVLVGTFLCTDRD-ANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58 (60)
Q Consensus 4 gR~~~G~l~~~D~~-~NlvL~~~~E~~~~~~~~~~~~~~~~~~r~lG~v~irG~~I 58 (60)
+-.|+|+|...|.. .-+-|.++.-+=.+.... +.........+..++.||..|
T Consensus 29 dIRYeGiL~~In~~~sTiaL~nVRsfGTEgR~~--~~~ipp~~~vyeyIvFrGsDI 82 (95)
T 2fb7_A 29 EIRYEGILYTIDTENSTVALAKVRSFGTEDRPT--DRPIAPRDETFEYIIFRGSDI 82 (95)
T ss_dssp TEEEEEEEEEEETTTTEEEEESCCCCSCCSSSC--SSCCCSCCCCSSCEEECSTTE
T ss_pred CceEEEEEecccCccCEEEEEeeeEecccCCCC--CCccCCCCcceeEEEEcCCCc
Confidence 34689999999976 568888887664432111 001112233456788888765
No 58
>2q6k_A Chlorinase; complex with adenosine, biosynthetic protein; HET: ADN; 1.55A {Salinispora tropica} PDB: 2q6i_A* 2q6o_A* 2q6l_A*
Probab=31.58 E-value=31 Score=22.10 Aligned_cols=21 Identities=19% Similarity=0.067 Sum_probs=15.9
Q ss_pred CceEEEEEEeec-CCCceEecc
Q psy1222 4 GRVLVGTFLCTD-RDANVILGS 24 (60)
Q Consensus 4 gR~~~G~l~~~D-~~~NlvL~~ 24 (60)
+..+.|.+.-+| .|.|++..=
T Consensus 172 ~~~i~g~V~~iD~~FGN~iTnI 193 (283)
T 2q6k_A 172 EGGIRGEVVRIDRAFGNVWTNI 193 (283)
T ss_dssp ---CEEEEEEEETTTTEEEEEE
T ss_pred CCeEEEEEEEECCCCCCEEecC
Confidence 345789999999 999998753
No 59
>3bfm_A Biotin protein ligase-like protein of unknown FUN; structural genomics, joint center for structural genomics, J protein structure initiative; HET: 2PE; 1.70A {Silicibacter SP}
Probab=29.45 E-value=55 Score=19.71 Aligned_cols=20 Identities=35% Similarity=0.444 Sum_probs=17.5
Q ss_pred EEEEEEeecCCCceEecccc
Q psy1222 7 LVGTFLCTDRDANVILGSCG 26 (60)
Q Consensus 7 ~~G~l~~~D~~~NlvL~~~~ 26 (60)
+.|++.++|....|++....
T Consensus 202 ~~G~~~gId~~G~L~v~~~~ 221 (235)
T 3bfm_A 202 RSGTFLGVDEDFGMLLRDET 221 (235)
T ss_dssp EEEEEEEECTTCCEEEECSS
T ss_pred EEEEEEEECCCCeEEEEeCC
Confidence 78999999999999997543
No 60
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=26.98 E-value=55 Score=21.74 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=21.8
Q ss_pred CCCCceEEEEEEeecCCCceEecccc
Q psy1222 1 MTDGRVLVGTFLCTDRDANVILGSCG 26 (60)
Q Consensus 1 l~dgR~~~G~l~~~D~~~NlvL~~~~ 26 (60)
+.||+.+.+.+.++|...+|-|=...
T Consensus 117 ~~dg~~~~a~vv~~d~~~DlAvlkv~ 142 (448)
T 1ky9_A 117 LSDGRKFDAKMVGKDPRSDIALIQIQ 142 (448)
T ss_dssp ETTSCEEEEEEEEEETTTTEEEEEES
T ss_pred ECCCCEEEEEEEEEcCCCCEEEEEec
Confidence 35899999999999999998776554
No 61
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=26.94 E-value=60 Score=21.37 Aligned_cols=25 Identities=20% Similarity=0.414 Sum_probs=21.4
Q ss_pred CCCCceEEEEEEeecCCCceEeccc
Q psy1222 1 MTDGRVLVGTFLCTDRDANVILGSC 25 (60)
Q Consensus 1 l~dgR~~~G~l~~~D~~~NlvL~~~ 25 (60)
+.||+.+.+.+.++|...+|-|=..
T Consensus 94 ~~dg~~~~a~vv~~d~~~DlAllkv 118 (436)
T 4a8c_A 94 LNDGREFDAKLIGSDDQSDIALLQI 118 (436)
T ss_pred eCCCCEEEEEEEEEcCCCCEEEEEe
Confidence 3689999999999999999877655
No 62
>3vg8_G Hypothetical protein TTHB210; alpha and beta proteins (A+B), unknown function; 2.20A {Thermus thermophilus}
Probab=25.00 E-value=27 Score=19.71 Aligned_cols=14 Identities=43% Similarity=0.774 Sum_probs=12.4
Q ss_pred EEEEeecCCCceEe
Q psy1222 9 GTFLCTDRDANVIL 22 (60)
Q Consensus 9 G~l~~~D~~~NlvL 22 (60)
|-|.|||++.++|-
T Consensus 31 GPf~ayd~~grlV~ 44 (116)
T 3vg8_G 31 GPFLAYDRAGNLVK 44 (116)
T ss_dssp CCEEEEETTTEEEE
T ss_pred CCeEeEccCCcEEE
Confidence 77999999999984
No 63
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=23.88 E-value=91 Score=19.88 Aligned_cols=25 Identities=20% Similarity=0.414 Sum_probs=21.1
Q ss_pred CCCCceEEEEEEeecCCCceEeccc
Q psy1222 1 MTDGRVLVGTFLCTDRDANVILGSC 25 (60)
Q Consensus 1 l~dgR~~~G~l~~~D~~~NlvL~~~ 25 (60)
+.||+.+.+.+.++|....|-|=..
T Consensus 94 ~~dg~~~~a~vv~~d~~~DlAlLkv 118 (345)
T 3stj_A 94 LNDGREFDAKLIGSDDQSDIALLQI 118 (345)
T ss_dssp CTTSCEEEEEEEEEETTTTEEEEEE
T ss_pred eCCCcEEEEEEEEEcCCCCEEEEEE
Confidence 4689999999999999998876554
No 64
>2e12_A SM-like motif, hypothetical protein XCC3642; novel SM-like motif, LSM motif, X- RAY crystallography, translation; 1.70A {Xanthomonas campestris PV}
Probab=23.34 E-value=39 Score=18.48 Aligned_cols=11 Identities=36% Similarity=0.836 Sum_probs=9.0
Q ss_pred CCCCceEEEEE
Q psy1222 1 MTDGRVLVGTF 11 (60)
Q Consensus 1 l~dgR~~~G~l 11 (60)
|.||+.+.|++
T Consensus 35 l~DGs~l~GTv 45 (101)
T 2e12_A 35 LDDGSMIAGTV 45 (101)
T ss_dssp ETTSCEEEEEE
T ss_pred EcCCCeEeeee
Confidence 46899999986
No 65
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster}
Probab=22.14 E-value=68 Score=18.06 Aligned_cols=27 Identities=15% Similarity=0.233 Sum_probs=23.4
Q ss_pred ceEEEEEEeecCCCceEecccccccCc
Q psy1222 5 RVLVGTFLCTDRDANVILGSCGEYLSP 31 (60)
Q Consensus 5 R~~~G~l~~~D~~~NlvL~~~~E~~~~ 31 (60)
..+.|.|.|.+.-..+.+.||-+....
T Consensus 33 ~~V~G~LLG~~~~~~veV~nsF~~p~~ 59 (141)
T 4e0q_A 33 RQVYGALIGKQKGRNIEIMNSFELKTD 59 (141)
T ss_dssp CEEEEEEEEEEETTEEEEEEEEECCEE
T ss_pred cEEEEEEEEEEeCCEEEEEEEEEeccc
Confidence 579999999988889999999888664
No 66
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=21.81 E-value=77 Score=21.05 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=21.4
Q ss_pred CCCCceEEEEEEeecCCCceEeccc
Q psy1222 1 MTDGRVLVGTFLCTDRDANVILGSC 25 (60)
Q Consensus 1 l~dgR~~~G~l~~~D~~~NlvL~~~ 25 (60)
+.||+.+.+.+.++|...+|-|=..
T Consensus 108 ~~dg~~~~a~vv~~d~~~DlAlLkv 132 (451)
T 3pv2_A 108 LQDGRRLKARLIGGDSETDLAVLKI 132 (451)
T ss_dssp CTTSCEEECEEEEEETTTTEEEEEC
T ss_pred EcCCCEEEEEEEecCcCCcEEEEEE
Confidence 4689999999999999999877654
No 67
>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli}
Probab=20.87 E-value=1.2e+02 Score=18.36 Aligned_cols=25 Identities=20% Similarity=0.414 Sum_probs=20.9
Q ss_pred CCCCceEEEEEEeecCCCceEeccc
Q psy1222 1 MTDGRVLVGTFLCTDRDANVILGSC 25 (60)
Q Consensus 1 l~dgR~~~G~l~~~D~~~NlvL~~~ 25 (60)
+.||+.+.+.+.+.|....|-|=..
T Consensus 94 ~~dg~~~~a~vv~~d~~~DlAlLkv 118 (245)
T 3sti_A 94 LNDGREFDAKLIGSDDQSDIALLQI 118 (245)
T ss_dssp CTTSCEEEEEEEEEETTTTEEEEEE
T ss_pred ECCCCEEEEEEEEecCCCCEEEEEe
Confidence 4689999999999999988876554
No 68
>2f4n_A Hypothetical protein MJ1651; conserved hypothetical protein, mehtanococcus jannaschii, structural genomics, PSI; 2.50A {Methanocaldococcus jannaschii}
Probab=20.75 E-value=28 Score=22.31 Aligned_cols=19 Identities=21% Similarity=0.134 Sum_probs=15.4
Q ss_pred EEEEEEeecCCCceEeccc
Q psy1222 7 LVGTFLCTDRDANVILGSC 25 (60)
Q Consensus 7 ~~G~l~~~D~~~NlvL~~~ 25 (60)
+.|.+.-+|.|.|++..=.
T Consensus 171 i~g~V~~iD~FGN~iTnI~ 189 (273)
T 2f4n_A 171 TKKRVIHIDRFGNIITNIK 189 (273)
T ss_dssp SSCBEEEECSSSCEEESCC
T ss_pred eEEEEEEEcccCChhhcCC
Confidence 5688889999999997543
No 69
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii}
Probab=20.49 E-value=76 Score=19.22 Aligned_cols=19 Identities=26% Similarity=0.424 Sum_probs=16.5
Q ss_pred eEEEEEEeecCCCceEeccc
Q psy1222 6 VLVGTFLCTDRDANVILGSC 25 (60)
Q Consensus 6 ~~~G~l~~~D~~~NlvL~~~ 25 (60)
.+.|++.++|....|+ ...
T Consensus 204 ~~~G~~~gId~~G~L~-~~~ 222 (237)
T 2ej9_A 204 IITGKVYDIDFDGIVL-GTE 222 (237)
T ss_dssp EEEEEEEEECSSEEEE-EET
T ss_pred EEEEEEEEECCCCeEE-EcC
Confidence 3999999999999999 644
No 70
>3mkv_A Putative amidohydrolase; sargasso SEA, structural genomics, protein structure initiat NEW YORK structural genomix research consortium, nysgxrc; HET: KCX; 2.40A {Undefined}
Probab=20.19 E-value=22 Score=20.91 Aligned_cols=16 Identities=25% Similarity=0.472 Sum_probs=9.1
Q ss_pred CCCceEEEEEEeecCC
Q psy1222 2 TDGRVLVGTFLCTDRD 17 (60)
Q Consensus 2 ~dgR~~~G~l~~~D~~ 17 (60)
.|||.+...|.|.|-|
T Consensus 406 ~~G~vv~~~l~g~~G~ 421 (426)
T 3mkv_A 406 KDGRLFVNELEGHEGH 421 (426)
T ss_dssp ETTEEEEECCC-----
T ss_pred ECCEEEECCccCCCCC
Confidence 5788888888887765
Done!