Your job contains 1 sequence.
>psy1222
MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHIPA
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy1222
(60 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|Q9BRA0 - symbol:LSMD1 "LSM domain-containing pr... 168 1.2e-12 1
MGI|MGI:1925554 - symbol:Lsmd1 "LSM domain containing 1" ... 168 1.2e-12 1
FB|FBgn0051950 - symbol:CG31950 species:7227 "Drosophila ... 155 2.8e-11 1
WB|WBGene00004915 - symbol:snr-2 species:6239 "Caenorhabd... 110 1.6e-06 1
TAIR|locus:2163416 - symbol:AT5G44500 "AT5G44500" species... 111 3.9e-06 1
UNIPROTKB|J3QLE5 - symbol:SNRPN "Small nuclear ribonucleo... 101 1.5e-05 1
UNIPROTKB|Q9PV94 - symbol:SNRPB "Small nuclear ribonucleo... 105 1.6e-05 1
TAIR|locus:2128610 - symbol:smB "small nuclear ribonucleo... 105 1.9e-05 1
UNIPROTKB|E2R1C4 - symbol:SNRPB "Small nuclear ribonucleo... 104 1.9e-05 1
MGI|MGI:98342 - symbol:Snrpb "small nuclear ribonucleopro... 104 1.9e-05 1
UNIPROTKB|F1S891 - symbol:SNRPN "Small nuclear ribonucleo... 104 2.0e-05 1
UNIPROTKB|G1K134 - symbol:Bt.57435 "Small nuclear ribonuc... 104 2.1e-05 1
ZFIN|ZDB-GENE-040426-1819 - symbol:snrpb "small nuclear r... 104 2.1e-05 1
UNIPROTKB|Q58DW4 - symbol:SNRPB "Small nuclear ribonucleo... 104 2.1e-05 1
UNIPROTKB|P14678 - symbol:SNRPB "Small nuclear ribonucleo... 104 2.1e-05 1
UNIPROTKB|Q9N1Q0 - symbol:SNRPB "Small nuclear ribonucleo... 104 2.1e-05 1
UNIPROTKB|Q9TU66 - symbol:SNRPB "Small nuclear ribonucleo... 104 2.1e-05 1
UNIPROTKB|Q9TU67 - symbol:SNRPB "Small nuclear ribonucleo... 104 2.1e-05 1
UNIPROTKB|Q17QN3 - symbol:SNRPN "Small nuclear ribonucleo... 101 4.5e-05 1
UNIPROTKB|E2RPQ0 - symbol:SNRPN "Small nuclear ribonucleo... 101 4.5e-05 1
UNIPROTKB|P63162 - symbol:SNRPN "Small nuclear ribonucleo... 101 4.5e-05 1
UNIPROTKB|I3LBT8 - symbol:SNRPN "Small nuclear ribonucleo... 101 4.5e-05 1
MGI|MGI:98347 - symbol:Snrpn "small nuclear ribonucleopro... 101 4.5e-05 1
RGD|621306 - symbol:Snrpn "small nuclear ribonucleoprotei... 101 4.5e-05 1
UNIPROTKB|B3KVR1 - symbol:SNRPN "Small nuclear ribonucleo... 101 4.7e-05 1
RGD|621301 - symbol:Snrpb "small nuclear ribonucleoprotei... 99 5.6e-05 1
FB|FBgn0262601 - symbol:SmB "Small ribonucleoprotein part... 96 0.00010 1
POMBASE|SPBC947.03c - symbol:naa38 "NatC N-acetyltransfer... 87 0.00045 1
POMBASE|SPAC26A3.08 - symbol:smb1 "Sm snRNP core protein ... 86 0.00057 1
>UNIPROTKB|Q9BRA0 [details] [associations]
symbol:LSMD1 "LSM domain-containing protein 1" species:9606
"Homo sapiens" [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] INTERPRO:IPR001163 GO:GO:0005634
GO:GO:0005737 InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 EMBL:AF530060 EMBL:BC006407
EMBL:BC033861 EMBL:BC051846 EMBL:BC059944 IPI:IPI00304922
IPI:IPI00384274 RefSeq:NP_115732.2 UniGene:Hs.565094 HSSP:P14678
ProteinModelPortal:Q9BRA0 SMR:Q9BRA0 STRING:Q9BRA0
PhosphoSite:Q9BRA0 DMDM:74732854 PaxDb:Q9BRA0 PRIDE:Q9BRA0
DNASU:84316 Ensembl:ENST00000333775 Ensembl:ENST00000335155
GeneID:84316 KEGG:hsa:84316 UCSC:uc002giz.3 UCSC:uc002gja.3
CTD:84316 GeneCards:GC17M007761 H-InvDB:HIX0013513 HGNC:HGNC:28212
neXtProt:NX_Q9BRA0 PharmGKB:PA142671503 eggNOG:NOG295890
HOGENOM:HOG000048009 HOVERGEN:HBG107368 OMA:ENGPSTH
OrthoDB:EOG4DFPPW ChiTaRS:LSMD1 GenomeRNAi:84316 NextBio:74028
Bgee:Q9BRA0 CleanEx:HS_LSMD1 Genevestigator:Q9BRA0 Uniprot:Q9BRA0
Length = 125
Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 36/58 (62%), Positives = 39/58 (67%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
MTDGR LVG FLCTDRD NVILGS E+L P + A E R+LGL MVPG HI
Sbjct: 57 MTDGRTLVGCFLCTDRDCNVILGSAQEFLKPS-----DSFSAGEPRVLGLAMVPGHHI 109
>MGI|MGI:1925554 [details] [associations]
symbol:Lsmd1 "LSM domain containing 1" species:10090 "Mus
musculus" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] MGI:MGI:1925554
INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0005737 InterPro:IPR010920
SUPFAM:SSF50182 EMBL:AL596125 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 HSSP:P14678 CTD:84316 eggNOG:NOG295890
HOGENOM:HOG000048009 HOVERGEN:HBG107368 OMA:ENGPSTH
OrthoDB:EOG4DFPPW EMBL:AK018782 EMBL:BC048499 EMBL:BC062267
IPI:IPI00458812 IPI:IPI00857947 RefSeq:NP_084359.1 UniGene:Mm.45683
ProteinModelPortal:Q9D2U5 SMR:Q9D2U5 STRING:Q9D2U5
PhosphoSite:Q9D2U5 PaxDb:Q9D2U5 PRIDE:Q9D2U5
Ensembl:ENSMUST00000144531 GeneID:78304 KEGG:mmu:78304
UCSC:uc007jqa.1 GeneTree:ENSGT00390000018418 InParanoid:Q9D2U5
NextBio:348653 Bgee:Q9D2U5 CleanEx:MM_LSMD1 Genevestigator:Q9D2U5
Uniprot:Q9D2U5
Length = 125
Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 36/58 (62%), Positives = 39/58 (67%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
MTDGR LVG FLCTDRD NVILGS E+L P + A E R+LGL MVPG HI
Sbjct: 57 MTDGRTLVGCFLCTDRDCNVILGSAQEFLKPS-----DSFSAGEPRVLGLAMVPGHHI 109
>FB|FBgn0051950 [details] [associations]
symbol:CG31950 species:7227 "Drosophila melanogaster"
[GO:0030532 "small nuclear ribonucleoprotein complex" evidence=ISS]
INTERPRO:IPR001163 EMBL:AE014134 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 HSSP:P14678
GeneTree:ENSGT00390000018418 EMBL:BT044300 RefSeq:NP_722859.1
UniGene:Dm.23802 SMR:Q8IPZ7 EnsemblMetazoa:FBtr0077630
EnsemblMetazoa:FBtr0332457 GeneID:319043 KEGG:dme:Dmel_CG31950
UCSC:CG31950-RA FlyBase:FBgn0051950 InParanoid:Q8IPZ7 OMA:TDRDANI
OrthoDB:EOG4CRJGH GenomeRNAi:319043 NextBio:847056 Uniprot:Q8IPZ7
Length = 121
Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 35/58 (60%), Positives = 38/58 (65%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+TDGRVLVG F CTDRDAN++L C EYL QE RLLG VMVPGQHI
Sbjct: 57 ITDGRVLVGFFNCTDRDANIVLSMCAEYLVE----------GQEPRLLGNVMVPGQHI 104
>WB|WBGene00004915 [details] [associations]
symbol:snr-2 species:6239 "Caenorhabditis elegans"
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0040027 "negative regulation of vulval
development" evidence=IMP] INTERPRO:IPR001163 GO:GO:0005634
GO:GO:0009792 GO:GO:0002009 GO:GO:0006898 GO:GO:0040007
GO:GO:0002119 GO:GO:0000003 GO:GO:0003723 GO:GO:0030529
GO:GO:0040027 InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 KO:K11086
HOGENOM:HOG000188899 EMBL:Z92773 PIR:T26289 RefSeq:NP_493348.1
ProteinModelPortal:P91918 SMR:P91918 IntAct:P91918 STRING:P91918
PaxDb:P91918 EnsemblMetazoa:W08E3.1.1 EnsemblMetazoa:W08E3.1.2
GeneID:173204 KEGG:cel:CELE_W08E3.1 UCSC:W08E3.1 CTD:173204
WormBase:W08E3.1 GeneTree:ENSGT00670000098029 InParanoid:P91918
OMA:AECEEHR NextBio:878703 Uniprot:P91918
Length = 160
Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR +G F D+ N++L C E+ + K+ +G +E R+LGLV+V G+HI
Sbjct: 21 LQDGRTFIGFFKAFDKHMNILLAECEEHRQIKPKAGKKTDG-EEKRILGLVLVRGEHI 77
>TAIR|locus:2163416 [details] [associations]
symbol:AT5G44500 "AT5G44500" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
INTERPRO:IPR001163 EMBL:CP002688 GO:GO:0005730 GO:GO:0003723
GO:GO:0030529 EMBL:AB017065 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 HSSP:P14678 KO:K11086
InterPro:IPR017131 PIRSF:PIRSF037187 OMA:KNNKMIQ EMBL:AY042856
EMBL:AY072470 EMBL:AK176849 EMBL:AK221574 IPI:IPI00525357
RefSeq:NP_001032011.1 RefSeq:NP_199263.1 UniGene:At.7776
ProteinModelPortal:Q9FI15 SMR:Q9FI15 IntAct:Q9FI15 STRING:Q9FI15
EnsemblPlants:AT5G44500.1 EnsemblPlants:AT5G44500.2 GeneID:834477
KEGG:ath:AT5G44500 TAIR:At5g44500 InParanoid:Q9FI15
PhylomeDB:Q9FI15 ProtClustDB:CLSN2916196 Genevestigator:Q9FI15
Uniprot:Q9FI15
Length = 254
Score = 111 (44.1 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 23/58 (39%), Positives = 33/58 (56%)
Query: 3 DGRVLVGTFLCTDRDANVILGSCGEY--LSPEVFESKEENGAQEARLLGLVMVPGQHI 58
DGR L+G F+ DR N++LG C E+ L P K +E R LGLV++ G+ +
Sbjct: 23 DGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNKKTNEEREERRTLGLVLLRGEEV 80
>UNIPROTKB|J3QLE5 [details] [associations]
symbol:SNRPN "Small nuclear ribonucleoprotein-associated
protein N" species:9606 "Homo sapiens" [GO:0005685 "U1 snRNP"
evidence=IEA] [GO:0005686 "U2 snRNP" evidence=IEA] [GO:0009725
"response to hormone stimulus" evidence=IEA] INTERPRO:IPR001163
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 HGNC:HGNC:11164 ChiTaRS:SNRPN EMBL:AC124312
EMBL:AC090602 EMBL:AC090983 Ensembl:ENST00000579070 Uniprot:J3QLE5
Length = 169
Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 20/58 (34%), Positives = 36/58 (62%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + +K+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE-REEKRVLGLVLLRGENL 77
>UNIPROTKB|Q9PV94 [details] [associations]
symbol:SNRPB "Small nuclear ribonucleoprotein-associated
protein B'" species:9031 "Gallus gallus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] INTERPRO:IPR001163 GO:GO:0005634
GO:GO:0003723 GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
KO:K11086 CTD:6628 HOGENOM:HOG000188899 HOVERGEN:HBG001019
OrthoDB:EOG44MXTD InterPro:IPR017131 PIRSF:PIRSF037187
GeneTree:ENSGT00670000098029 EMBL:AF134830 IPI:IPI00603436
RefSeq:NP_989930.1 UniGene:Gga.3086 ProteinModelPortal:Q9PV94
SMR:Q9PV94 STRING:Q9PV94 PRIDE:Q9PV94 Ensembl:ENSGALT00000011732
GeneID:395298 KEGG:gga:395298 InParanoid:Q9PV94 OMA:KNNKMIQ
NextBio:20815383 ArrayExpress:Q9PV94 Uniprot:Q9PV94
Length = 240
Score = 105 (42.0 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 22/58 (37%), Positives = 36/58 (62%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGRV +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRVFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPE-REEKRVLGLVLLRGENL 77
>TAIR|locus:2128610 [details] [associations]
symbol:smB "small nuclear ribonucleoprotein associated
protein B" species:3702 "Arabidopsis thaliana" [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=IDA] [GO:0015030 "Cajal body" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0001510 "RNA methylation" evidence=RCA]
INTERPRO:IPR001163 GO:GO:0005829 EMBL:CP002687 GO:GO:0003723
GO:GO:0030529 GO:GO:0015030 GO:GO:0000398 InterPro:IPR010920
SUPFAM:SSF50182 EMBL:AL161553 EMBL:AL080253 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 HSSP:P14678 KO:K11086
HOGENOM:HOG000188899 InterPro:IPR017131 PIRSF:PIRSF037187
OMA:PIIRPPG ProtClustDB:CLSN2916196 EMBL:BT004219 EMBL:BT005057
EMBL:AK317021 IPI:IPI00542207 PIR:T10586 RefSeq:NP_001031682.1
RefSeq:NP_001154258.1 RefSeq:NP_193777.1 RefSeq:NP_849414.1
UniGene:At.3551 ProteinModelPortal:Q9SUN5 SMR:Q9SUN5 IntAct:Q9SUN5
STRING:Q9SUN5 EnsemblPlants:AT4G20440.1 EnsemblPlants:AT4G20440.2
EnsemblPlants:AT4G20440.3 EnsemblPlants:AT4G20440.4 GeneID:827792
KEGG:ath:AT4G20440 TAIR:At4g20440 InParanoid:Q9SUN5
PhylomeDB:Q9SUN5 Genevestigator:Q9SUN5 Uniprot:Q9SUN5
Length = 257
Score = 105 (42.0 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 23/57 (40%), Positives = 34/57 (59%)
Query: 3 DGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQE-ARLLGLVMVPGQHI 58
DGR LVG F+ DR N++LG C E+ + K+ N +E R LGLV++ G+ +
Sbjct: 23 DGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKINEEREDRRTLGLVLLRGEEV 79
>UNIPROTKB|E2R1C4 [details] [associations]
symbol:SNRPB "Small nuclear ribonucleoprotein-associated
protein" species:9615 "Canis lupus familiaris" [GO:0005634
"nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0003723 GO:GO:0030529
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 KO:K11086 CTD:6628 InterPro:IPR017131
PIRSF:PIRSF037187 GeneTree:ENSGT00670000098029 OMA:KNNKMIQ
EMBL:AAEX03013840 RefSeq:XP_542930.2 ProteinModelPortal:E2R1C4
Ensembl:ENSCAFT00000030343 GeneID:485806 KEGG:cfa:485806
Uniprot:E2R1C4
Length = 231
Score = 104 (41.7 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 21/58 (36%), Positives = 36/58 (62%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE-REEKRVLGLVLLRGENL 77
>MGI|MGI:98342 [details] [associations]
symbol:Snrpb "small nuclear ribonucleoprotein B" species:10090
"Mus musculus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005683 "U7
snRNP" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0071204 "histone pre-mRNA 3'end processing complex"
evidence=IDA] [GO:0071208 "histone pre-mRNA DCP binding"
evidence=IDA] MGI:MGI:98342 INTERPRO:IPR001163 GO:GO:0005737
GO:GO:0008380 GO:GO:0006397 GO:GO:0071013 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0005689 GO:GO:0071204 Pfam:PF01423
GO:GO:0005683 GO:GO:0071208 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 KO:K11086 CTD:6628 HOGENOM:HOG000188899
HOVERGEN:HBG001019 OrthoDB:EOG44MXTD InterPro:IPR017131
PIRSF:PIRSF037187 GeneTree:ENSGT00670000098029 OMA:KNNKMIQ
ChiTaRS:SNRPB EMBL:M58761 EMBL:AK146319 IPI:IPI00114052 PIR:I53659
RefSeq:NP_033251.1 UniGene:Mm.88216 ProteinModelPortal:P27048
SMR:P27048 IntAct:P27048 STRING:P27048 PhosphoSite:P27048
PaxDb:P27048 PRIDE:P27048 DNASU:20638 Ensembl:ENSMUST00000103199
GeneID:20638 KEGG:mmu:20638 InParanoid:P27048 NextBio:299039
PMAP-CutDB:P27048 Bgee:P27048 CleanEx:MM_SNRPB
Genevestigator:P27048 GermOnline:ENSMUSG00000027404 Uniprot:P27048
Length = 231
Score = 104 (41.7 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 21/58 (36%), Positives = 36/58 (62%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE-REEKRVLGLVLLRGENL 77
>UNIPROTKB|F1S891 [details] [associations]
symbol:SNRPN "Small nuclear ribonucleoprotein-associated
protein" species:9823 "Sus scrofa" [GO:0005634 "nucleus"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] INTERPRO:IPR001163
GO:GO:0005634 GO:GO:0003723 GO:GO:0030529 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
InterPro:IPR017131 PIRSF:PIRSF037187 GeneTree:ENSGT00670000098029
EMBL:CU633588 Ensembl:ENSSSCT00000007852 OMA:PGHAPPR Uniprot:F1S891
Length = 238
Score = 104 (41.7 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 21/58 (36%), Positives = 36/58 (62%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE-REEKRVLGLVLLRGENL 77
>UNIPROTKB|G1K134 [details] [associations]
symbol:Bt.57435 "Small nuclear ribonucleoprotein-associated
protein" species:9913 "Bos taurus" [GO:0071208 "histone pre-mRNA
DCP binding" evidence=IEA] [GO:0071204 "histone pre-mRNA 3'end
processing complex" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0005683 "U7 snRNP" evidence=IEA] INTERPRO:IPR001163
GO:GO:0005737 GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0005689 GO:GO:0071204 Pfam:PF01423 GO:GO:0005683
GO:GO:0071208 InterPro:IPR006649 SMART:SM00651 InterPro:IPR017131
PIRSF:PIRSF037187 GeneTree:ENSGT00670000098029 EMBL:DAAA02036194
Ensembl:ENSBTAT00000001379 OMA:PGIAFFD Uniprot:G1K134
Length = 239
Score = 104 (41.7 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 21/58 (36%), Positives = 36/58 (62%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE-REEKRVLGLVLLRGENL 77
>ZFIN|ZDB-GENE-040426-1819 [details] [associations]
symbol:snrpb "small nuclear ribonucleoprotein
polypeptides B and B1" species:7955 "Danio rerio" [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] INTERPRO:IPR001163
ZFIN:ZDB-GENE-040426-1819 GO:GO:0005634 GO:GO:0003723 GO:GO:0030529
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 HSSP:P14678 KO:K11086 CTD:6628
HOGENOM:HOG000188899 HOVERGEN:HBG001019 OrthoDB:EOG44MXTD
InterPro:IPR017131 PIRSF:PIRSF037187 GeneTree:ENSGT00670000098029
EMBL:CU929339 EMBL:AF259079 EMBL:BC065601 IPI:IPI00498167
RefSeq:NP_991230.1 UniGene:Dr.30320 SMR:Q9I9E5 STRING:Q9I9E5
Ensembl:ENSDART00000011663 GeneID:402966 KEGG:dre:402966
InParanoid:Q9I9E5 NextBio:20816775 Uniprot:Q9I9E5
Length = 239
Score = 104 (41.7 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 21/58 (36%), Positives = 36/58 (62%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPE-REEKRVLGLVLLRGENL 77
>UNIPROTKB|Q58DW4 [details] [associations]
symbol:SNRPB "Small nuclear ribonucleoprotein-associated
protein B'" species:9913 "Bos taurus" [GO:0042802 "identical
protein binding" evidence=ISS] [GO:0005683 "U7 snRNP" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
INTERPRO:IPR001163 GO:GO:0008380 GO:GO:0006397 GO:GO:0005681
GO:GO:0003723 GO:GO:0042802 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 GO:GO:0005683 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 HSSP:P14678 KO:K11086 EMBL:BT021483 IPI:IPI00702381
RefSeq:NP_001029903.1 UniGene:Bt.57435 ProteinModelPortal:Q58DW4
SMR:Q58DW4 STRING:Q58DW4 PRIDE:Q58DW4 GeneID:613304 KEGG:bta:613304
CTD:6628 HOGENOM:HOG000188899 HOVERGEN:HBG001019 InParanoid:Q58DW4
OrthoDB:EOG44MXTD NextBio:20898510 InterPro:IPR017131
PIRSF:PIRSF037187 Uniprot:Q58DW4
Length = 240
Score = 104 (41.7 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 21/58 (36%), Positives = 36/58 (62%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE-REEKRVLGLVLLRGENL 77
>UNIPROTKB|P14678 [details] [associations]
symbol:SNRPB "Small nuclear ribonucleoprotein-associated
proteins B and B'" species:9606 "Homo sapiens" [GO:0071204 "histone
pre-mRNA 3'end processing complex" evidence=IEA] [GO:0071208
"histone pre-mRNA DCP binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005689 "U12-type spliceosomal complex"
evidence=IDA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0005683 "U7 snRNP" evidence=IDA] [GO:0030532
"small nuclear ribonucleoprotein complex" evidence=TAS] [GO:0005681
"spliceosomal complex" evidence=TAS] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IC;TAS] [GO:0000387 "spliceosomal snRNP
assembly" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=TAS] [GO:0006369 "termination
of RNA polymerase II transcription" evidence=TAS] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0008334 "histone mRNA metabolic
process" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0034660 "ncRNA metabolic
process" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
INTERPRO:IPR001163 GO:GO:0005829 GO:GO:0005654 Reactome:REACT_1675
EMBL:CH471133 GO:GO:0000387 GO:GO:0034660 GO:GO:0071013
InterPro:IPR010920 SUPFAM:SSF50182 Reactome:REACT_1788
GO:GO:0006369 Reactome:REACT_78 GO:GO:0005689 GO:GO:0071204
Pfam:PF01423 GO:GO:0008334 GO:GO:0005683 GO:GO:0071208
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 KO:K11086 CTD:6628
HOGENOM:HOG000188899 HOVERGEN:HBG001019 OrthoDB:EOG44MXTD
InterPro:IPR017131 PIRSF:PIRSF037187 EMBL:X17567 EMBL:X17568
EMBL:X15893 EMBL:AF134825 EMBL:AF134822 EMBL:AF134823 EMBL:AF134824
EMBL:AL049650 EMBL:CR456969 EMBL:M34081 EMBL:M34082 EMBL:X52979
IPI:IPI00027285 IPI:IPI00329512 IPI:IPI00395674 PIR:S09377
RefSeq:NP_003082.1 RefSeq:NP_937859.1 UniGene:Hs.83753 PDB:1D3B
PDB:2Y9A PDB:2Y9B PDB:2Y9C PDB:2Y9D PDB:3CW1 PDB:3PGW PDBsum:1D3B
PDBsum:2Y9A PDBsum:2Y9B PDBsum:2Y9C PDBsum:2Y9D PDBsum:3CW1
PDBsum:3PGW ProteinModelPortal:P14678 SMR:P14678 DIP:DIP-31239N
IntAct:P14678 MINT:MINT-124876 STRING:P14678 PhosphoSite:P14678
DMDM:134037 PaxDb:P14678 PRIDE:P14678 DNASU:6628
Ensembl:ENST00000381342 Ensembl:ENST00000438552 GeneID:6628
KEGG:hsa:6628 UCSC:uc002wfz.1 GeneCards:GC20M002442 HGNC:HGNC:11153
HPA:CAB009610 HPA:HPA003482 MIM:182282 neXtProt:NX_P14678
PharmGKB:PA35995 ChiTaRS:SNRPB EvolutionaryTrace:P14678
GenomeRNAi:6628 NextBio:25817 ArrayExpress:P14678 Bgee:P14678
CleanEx:HS_SNRPB Genevestigator:P14678 GermOnline:ENSG00000125835
Uniprot:P14678
Length = 240
Score = 104 (41.7 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 21/58 (36%), Positives = 36/58 (62%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE-REEKRVLGLVLLRGENL 77
>UNIPROTKB|Q9N1Q0 [details] [associations]
symbol:SNRPB "Small nuclear ribonucleoprotein-associated
protein B'" species:9315 "Macropus eugenii" [GO:0005683 "U7 snRNP"
evidence=ISS] INTERPRO:IPR001163 GO:GO:0008380 GO:GO:0006397
GO:GO:0005681 GO:GO:0003723 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 GO:GO:0005683 InterPro:IPR006649 SMART:SM00651
HSSP:P14678 HOGENOM:HOG000188899 HOVERGEN:HBG001019
OrthoDB:EOG44MXTD InterPro:IPR017131 PIRSF:PIRSF037187
GeneTree:ENSGT00670000098029 EMBL:AF176323
ProteinModelPortal:Q9N1Q0 SMR:Q9N1Q0 PRIDE:Q9N1Q0
Ensembl:ENSMEUT00000015669 Uniprot:Q9N1Q0
Length = 240
Score = 104 (41.7 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 21/58 (36%), Positives = 36/58 (62%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE-REEKRVLGLVLLRGENL 77
>UNIPROTKB|Q9TU66 [details] [associations]
symbol:SNRPB "Small nuclear ribonucleoprotein-associated
protein B'" species:13616 "Monodelphis domestica" [GO:0005683 "U7
snRNP" evidence=ISS] INTERPRO:IPR001163 GO:GO:0008380 GO:GO:0006397
GO:GO:0005681 GO:GO:0003723 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 GO:GO:0005683 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 CTD:6628 HOGENOM:HOG000188899 HOVERGEN:HBG001019
OrthoDB:EOG44MXTD InterPro:IPR017131 PIRSF:PIRSF037187
EMBL:AF134827 RefSeq:NP_001029144.1 UniGene:Mdm.222
ProteinModelPortal:Q9TU66 SMR:Q9TU66 STRING:Q9TU66 PRIDE:Q9TU66
GeneID:554245 KEGG:mdo:554245 InParanoid:Q9TU66 Uniprot:Q9TU66
Length = 240
Score = 104 (41.7 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 21/58 (36%), Positives = 36/58 (62%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE-REEKRVLGLVLLRGENL 77
>UNIPROTKB|Q9TU67 [details] [associations]
symbol:SNRPB "Small nuclear ribonucleoprotein-associated
protein B'" species:9365 "Erinaceus europaeus" [GO:0005683 "U7
snRNP" evidence=ISS] INTERPRO:IPR001163 GO:GO:0008380 GO:GO:0006397
GO:GO:0005681 GO:GO:0003723 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 GO:GO:0005683 InterPro:IPR006649 SMART:SM00651
HOGENOM:HOG000188899 HOVERGEN:HBG001019 OrthoDB:EOG44MXTD
InterPro:IPR017131 PIRSF:PIRSF037187 EMBL:AF134826 EMBL:AF134829
ProteinModelPortal:Q9TU67 SMR:Q9TU67 PRIDE:Q9TU67 Uniprot:Q9TU67
Length = 240
Score = 104 (41.7 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 21/58 (36%), Positives = 36/58 (62%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE-REEKRVLGLVLLRGENL 77
>UNIPROTKB|Q17QN3 [details] [associations]
symbol:SNRPN "Small nuclear ribonucleoprotein-associated
protein N" species:9913 "Bos taurus" [GO:0005634 "nucleus"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] INTERPRO:IPR001163
GO:GO:0005634 GO:GO:0003723 GO:GO:0030529 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 HOVERGEN:HBG001019 InterPro:IPR017131
PIRSF:PIRSF037187 GeneTree:ENSGT00670000098029 EMBL:BC118260
EMBL:BC147854 IPI:IPI00703939 RefSeq:NP_001073265.1 UniGene:Bt.4887
ProteinModelPortal:Q17QN3 SMR:Q17QN3 STRING:Q17QN3 PRIDE:Q17QN3
Ensembl:ENSBTAT00000010856 GeneID:780877 KEGG:bta:780877 CTD:6638
InParanoid:Q17QN3 KO:K11100 OMA:PIIRPPG NextBio:20924520
Uniprot:Q17QN3
Length = 240
Score = 101 (40.6 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 20/58 (34%), Positives = 36/58 (62%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + +K+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE-REEKRVLGLVLLRGENL 77
>UNIPROTKB|E2RPQ0 [details] [associations]
symbol:SNRPN "Small nuclear ribonucleoprotein-associated
protein" species:9615 "Canis lupus familiaris" [GO:0005634
"nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0003723 GO:GO:0030529
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 InterPro:IPR017131 PIRSF:PIRSF037187
GeneTree:ENSGT00670000098029 CTD:6638 KO:K11100 OMA:HHTFICS
EMBL:AAEX03002194 RefSeq:XP_536165.1 Ensembl:ENSCAFT00000016088
GeneID:479012 KEGG:cfa:479012 NextBio:20854263 Uniprot:E2RPQ0
Length = 240
Score = 101 (40.6 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 20/58 (34%), Positives = 36/58 (62%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + +K+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE-REEKRVLGLVLLRGENL 77
>UNIPROTKB|P63162 [details] [associations]
symbol:SNRPN "Small nuclear ribonucleoprotein-associated
protein N" species:9606 "Homo sapiens" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005685 "U1 snRNP" evidence=IEA] [GO:0005686 "U2
snRNP" evidence=IEA] [GO:0009725 "response to hormone stimulus"
evidence=IEA] [GO:0030532 "small nuclear ribonucleoprotein complex"
evidence=TAS] [GO:0005681 "spliceosomal complex" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] INTERPRO:IPR001163 GO:GO:0008380
GO:GO:0005681 GO:GO:0003723 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0030532 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 Orphanet:739 HOGENOM:HOG000188899 HOVERGEN:HBG001019
OrthoDB:EOG44MXTD InterPro:IPR017131 PIRSF:PIRSF037187
HPA:HPA003482 CTD:6638 KO:K11100 EMBL:X15892 EMBL:J04615
EMBL:U41303 EMBL:AF400432 EMBL:CR450350 EMBL:BC000611 EMBL:BC003180
EMBL:BC024777 EMBL:BC025178 IPI:IPI00220360 PIR:A33270
RefSeq:NP_003088.1 RefSeq:NP_073716.1 RefSeq:NP_073717.1
RefSeq:NP_073718.1 RefSeq:NP_073719.1 UniGene:Hs.555970
UniGene:Hs.564847 UniGene:Hs.578619 UniGene:Hs.585703
UniGene:Hs.592473 UniGene:Hs.621316 UniGene:Hs.632166
UniGene:Hs.728856 UniGene:Hs.731866 UniGene:Hs.733072
UniGene:Hs.737651 ProteinModelPortal:P63162 SMR:P63162
IntAct:P63162 MINT:MINT-1365854 STRING:P63162 PhosphoSite:P63162
DMDM:52783794 PaxDb:P63162 PRIDE:P63162 DNASU:6638
Ensembl:ENST00000346403 Ensembl:ENST00000390687
Ensembl:ENST00000400097 Ensembl:ENST00000400098
Ensembl:ENST00000400100 Ensembl:ENST00000577565 GeneID:6638
KEGG:hsa:6638 UCSC:uc001ywp.1 GeneCards:GC15P025068 HGNC:HGNC:11164
MIM:182279 neXtProt:NX_P63162 PharmGKB:PA36005 InParanoid:P63162
PhylomeDB:P63162 ChiTaRS:SNRPN GenomeRNAi:6638 NextBio:25861
ArrayExpress:P63162 Bgee:P63162 CleanEx:HS_SNRPN
Genevestigator:P63162 GermOnline:ENSG00000128739 Uniprot:P63162
Length = 240
Score = 101 (40.6 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 20/58 (34%), Positives = 36/58 (62%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + +K+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE-REEKRVLGLVLLRGENL 77
>UNIPROTKB|I3LBT8 [details] [associations]
symbol:SNRPN "Small nuclear ribonucleoprotein-associated
protein" species:9823 "Sus scrofa" [GO:0005634 "nucleus"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] INTERPRO:IPR001163
GO:GO:0005634 GO:GO:0003723 GO:GO:0030529 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
InterPro:IPR017131 PIRSF:PIRSF037187 GeneTree:ENSGT00670000098029
OMA:HHTFICS Ensembl:ENSSSCT00000029603 Uniprot:I3LBT8
Length = 240
Score = 101 (40.6 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 20/58 (34%), Positives = 36/58 (62%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + +K+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE-REEKRVLGLVLLRGENL 77
>MGI|MGI:98347 [details] [associations]
symbol:Snrpn "small nuclear ribonucleoprotein N" species:10090
"Mus musculus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=TAS] [GO:0005685 "U1 snRNP" evidence=ISO]
[GO:0005686 "U2 snRNP" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] MGI:MGI:98347 INTERPRO:IPR001163
GO:GO:0005634 GO:GO:0003723 GO:GO:0030529 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 HOGENOM:HOG000188899 HOVERGEN:HBG001019
OrthoDB:EOG44MXTD InterPro:IPR017131 PIRSF:PIRSF037187 CTD:6638
KO:K11100 ChiTaRS:SNRPN EMBL:X62648 EMBL:X63730 EMBL:S62288
EMBL:AK013607 EMBL:BC019589 EMBL:BC024880 IPI:IPI00128699
PIR:S20068 RefSeq:NP_001076430.1 RefSeq:NP_001076431.1
RefSeq:NP_038698.1 UniGene:Mm.274995 ProteinModelPortal:P63163
SMR:P63163 STRING:P63163 PhosphoSite:P63163 PaxDb:P63163
PRIDE:P63163 Ensembl:ENSMUST00000059305 Ensembl:ENSMUST00000098402
GeneID:20646 KEGG:mmu:20646 InParanoid:P63163 OMA:HHTFICS
NextBio:299055 Bgee:P63163 CleanEx:MM_SNRPN Genevestigator:P63163
GermOnline:ENSMUSG00000000948 Uniprot:P63163
Length = 240
Score = 101 (40.6 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 20/58 (34%), Positives = 36/58 (62%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + +K+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE-REEKRVLGLVLLRGENL 77
>RGD|621306 [details] [associations]
symbol:Snrpn "small nuclear ribonucleoprotein polypeptide N"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005685
"U1 snRNP" evidence=IDA] [GO:0005686 "U2 snRNP" evidence=IDA]
[GO:0009725 "response to hormone stimulus" evidence=IEP] RGD:621306
INTERPRO:IPR001163 GO:GO:0003723 GO:GO:0009725 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0005686 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 GO:GO:0005685 HOGENOM:HOG000188899
HOVERGEN:HBG001019 OrthoDB:EOG44MXTD InterPro:IPR017131
PIRSF:PIRSF037187 GeneTree:ENSGT00670000098029 CTD:6638 KO:K11100
EMBL:M29293 EMBL:M29294 EMBL:BC087671 IPI:IPI00327582 PIR:A34503
RefSeq:NP_112379.1 UniGene:Rn.11169 ProteinModelPortal:P63164
SMR:P63164 STRING:P63164 PhosphoSite:P63164 PRIDE:P63164
Ensembl:ENSRNOT00000014641 Ensembl:ENSRNOT00000021763 GeneID:81781
KEGG:rno:81781 UCSC:RGD:621306 InParanoid:P63164 NextBio:615627
Genevestigator:P63164 GermOnline:ENSRNOG00000015976 Uniprot:P63164
Length = 240
Score = 101 (40.6 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 20/58 (34%), Positives = 36/58 (62%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + +K+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE-REEKRVLGLVLLRGENL 77
>UNIPROTKB|B3KVR1 [details] [associations]
symbol:SNRPN "Small nuclear ribonucleoprotein-associated
protein" species:9606 "Homo sapiens" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] INTERPRO:IPR001163
GO:GO:0005634 GO:GO:0003723 GO:GO:0030529 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
HOGENOM:HOG000188899 HOVERGEN:HBG001019 InterPro:IPR017131
PIRSF:PIRSF037187 UniGene:Hs.555970 UniGene:Hs.564847
UniGene:Hs.578619 UniGene:Hs.585703 UniGene:Hs.592473
UniGene:Hs.621316 UniGene:Hs.632166 UniGene:Hs.728856
UniGene:Hs.731866 UniGene:Hs.733072 UniGene:Hs.737651
HGNC:HGNC:11164 ChiTaRS:SNRPN OMA:HHTFICS EMBL:AC124312
EMBL:AC090602 EMBL:AC090983 EMBL:AK123119 IPI:IPI00785142
SMR:B3KVR1 STRING:B3KVR1 Ensembl:ENST00000444203
Ensembl:ENST00000554227 UCSC:uc021sgb.1 Uniprot:B3KVR1
Length = 244
Score = 101 (40.6 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 20/58 (34%), Positives = 36/58 (62%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + +K+ +E R+LGLV++ G+++
Sbjct: 25 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE-REEKRVLGLVLLRGENL 81
>RGD|621301 [details] [associations]
symbol:Snrpb "small nuclear ribonucleoprotein polypeptides B and
B1" species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;TAS] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0005683 "U7 snRNP"
evidence=ISO;ISS] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:0071204 "histone pre-mRNA 3'end processing
complex" evidence=ISO] [GO:0071208 "histone pre-mRNA DCP binding"
evidence=ISO] RGD:621301 INTERPRO:IPR001163 GO:GO:0005737
GO:GO:0008380 GO:GO:0006397 GO:GO:0071013 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0005689 GO:GO:0071204 Pfam:PF01423
GO:GO:0005683 GO:GO:0071208 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 HOVERGEN:HBG001019 InterPro:IPR017131
PIRSF:PIRSF037187 EMBL:M29295 IPI:IPI00565726 PIR:B34503
UniGene:Rn.3437 ProteinModelPortal:P17136 SMR:P17136 STRING:P17136
PhosphoSite:P17136 PRIDE:P17136 UCSC:RGD:621301 InParanoid:P17136
ArrayExpress:P17136 Genevestigator:P17136
GermOnline:ENSRNOG00000006961 Uniprot:P17136
Length = 214
Score = 99 (39.9 bits), Expect = 5.6e-05, P = 5.6e-05
Identities = 20/58 (34%), Positives = 36/58 (62%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ +GR+ +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 4 LQNGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE-REEKRVLGLVLLRGENL 60
>FB|FBgn0262601 [details] [associations]
symbol:SmB "Small ribonucleoprotein particle protein SmB"
species:7227 "Drosophila melanogaster" [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=ISS;NAS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;ISS] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0005634 "nucleus"
evidence=IDA;NAS] [GO:0016070 "RNA metabolic process" evidence=NAS]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0045495
"pole plasm" evidence=IDA] [GO:0007281 "germ cell development"
evidence=IMP] [GO:0008406 "gonad development" evidence=IMP]
[GO:0015030 "Cajal body" evidence=IDA] INTERPRO:IPR001163
GO:GO:0008406 GO:GO:0007052 EMBL:AE014134 GO:GO:0003723
GO:GO:0007281 GO:GO:0015030 GO:GO:0071011 GO:GO:0000398
GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0030532
GO:GO:0045495 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 KO:K11086 InterPro:IPR017131 PIRSF:PIRSF037187
GeneTree:ENSGT00670000098029 OMA:KNNKMIQ EMBL:L02919 EMBL:AY061171
PIR:JN0574 RefSeq:NP_001188780.1 RefSeq:NP_476921.1 UniGene:Dm.3699
ProteinModelPortal:Q05856 SMR:Q05856 DIP:DIP-18712N IntAct:Q05856
MINT:MINT-283074 STRING:Q05856 PaxDb:Q05856 PRIDE:Q05856
EnsemblMetazoa:FBtr0304118 GeneID:34426 KEGG:dme:Dmel_CG5352
CTD:34426 FlyBase:FBgn0262601 InParanoid:Q05856 OrthoDB:EOG4F7M2H
PhylomeDB:Q05856 GenomeRNAi:34426 NextBio:788434 Bgee:Q05856
GermOnline:CG5352 Uniprot:Q05856
Length = 199
Score = 96 (38.9 bits), Expect = 0.00010, P = 0.00010
Identities = 21/58 (36%), Positives = 32/58 (55%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ D R +GTF D+ N+ILG C E+ SK +E R+LG V++ G++I
Sbjct: 21 LQDSRTFIGTFKAFDKHMNLILGDCEEFRKIRSKNSKVPE-REEKRVLGFVLLRGENI 77
>POMBASE|SPBC947.03c [details] [associations]
symbol:naa38 "NatC N-acetyltransferase non catalytic
Sm-like domain subunit Naa38 (predicted)" species:4896
"Schizosaccharomyces pombe" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005783
"endoplasmic reticulum" evidence=IDA] [GO:0005789 "endoplasmic
reticulum membrane" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0017196 "N-terminal peptidyl-methionine
acetylation" evidence=IC] [GO:0031417 "NatC complex" evidence=ISO]
PomBase:SPBC947.03c INTERPRO:IPR001163 GO:GO:0005783 GO:GO:0016021
GO:GO:0005789 EMBL:CU329671 GO:GO:0017196 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 GO:GO:0031417 PIR:T40779
RefSeq:NP_595273.2 EnsemblFungi:SPBC947.03c.1 GeneID:2541272
KEGG:spo:SPBC947.03c eggNOG:NOG325038 OrthoDB:EOG4FV097
NextBio:20802384 Uniprot:O43080
Length = 116
Score = 87 (35.7 bits), Expect = 0.00045, P = 0.00045
Identities = 23/56 (41%), Positives = 30/56 (53%)
Query: 3 DGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
D R +G FLCTDR+ IL + EY G +R LGLV++PG+HI
Sbjct: 66 DERKFIGKFLCTDREGAAILSNTTEY----------NKGF--SRALGLVVIPGKHI 109
>POMBASE|SPAC26A3.08 [details] [associations]
symbol:smb1 "Sm snRNP core protein Smb1" species:4896
"Schizosaccharomyces pombe" [GO:0000395 "mRNA 5'-splice site
recognition" evidence=IC] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005681 "spliceosomal
complex" evidence=IC] [GO:0005685 "U1 snRNP" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0046540 "U4/U6 x U5
tri-snRNP complex" evidence=ISO] PomBase:SPAC26A3.08
INTERPRO:IPR001163 GO:GO:0005829 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0005681 GO:GO:0003723
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 GO:GO:0005685
GO:GO:0000395 KO:K11086 HOGENOM:HOG000188899 PIR:T38396
RefSeq:NP_594151.1 ProteinModelPortal:Q10163 IntAct:Q10163
STRING:Q10163 EnsemblFungi:SPAC26A3.08.1 GeneID:2542684
KEGG:spo:SPAC26A3.08 OMA:QEYRHIK OrthoDB:EOG4JMC0B NextBio:20803732
Uniprot:Q10163
Length = 147
Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 3 DGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
DGR VG L D N++L C EY + + +E R+LGLV++ G+ I
Sbjct: 20 DGRTFVGQLLAFDGFMNLVLSDCQEYRHIKKQNVPSNSVYEEKRMLGLVILRGEFI 75
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.138 0.408 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 60 60 0.00091 102 3 11 22 0.39 28
29 0.37 28
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 29
No. of states in DFA: 436 (46 KB)
Total size of DFA: 75 KB (2063 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 7.18u 0.09s 7.27t Elapsed: 00:00:08
Total cpu time: 7.18u 0.09s 7.27t Elapsed: 00:00:09
Start: Thu Aug 15 13:48:58 2013 End: Thu Aug 15 13:49:07 2013