RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1222
(60 letters)
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP,
splicing, core snRNP domain, systemic lupus eryth SLE,
RNA binding protein; HET: CIT; 2.00A {Homo sapiens}
SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Length = 91
Score = 58.7 bits (142), Expect = 8e-14
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ DGR+ +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAER-EEKRVLGLVLLRGENL 77
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM,
splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo
sapiens} PDB: 3cw1_A
Length = 231
Score = 48.1 bits (114), Expect = 7e-09
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHIP 59
+ DGR+ +GTF D+ N+IL C E+ + SK+ +E R+LGLV++ G+++
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE-REEKRVLGLVLLRGENLV 78
>4emk_C U6 snRNA-associated SM-like protein LSM7; SM fold, mRNA decay and
PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A
{Schizosaccharomyces pombe} PDB: 3swn_C
Length = 113
Score = 39.5 bits (92), Expect = 4e-06
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
T GR + G D+ N++L E + ++ R LGLV+V G +
Sbjct: 40 FTGGRQITGILKGFDQLMNLVLDDVEEQ----LRNPEDGKLTGAIRKLGLVVVRGTTL 93
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3;
RNA-binding protein, SM protein, ring, HOMO octamer,
mRNA processing; 2.50A {Saccharomyces cerevisiae}
Length = 96
Score = 38.9 bits (91), Expect = 5e-06
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ R LVGT D N++L E +++ E ++ R +V + G +
Sbjct: 27 LRGARTLVGTLQAFDSHCNIVLSDAVET----IYQLNNEELSESERRCEMVFIRGDTV 80
>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics,
structural genomics consortium, SGC, DNA binding
protein; 2.14A {Cryptosporidium parvum} SCOP: b.38.1.1
PDB: 3pgg_A
Length = 121
Score = 37.7 bits (87), Expect = 2e-05
Identities = 9/62 (14%), Positives = 21/62 (33%), Gaps = 4/62 (6%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYL----SPEVFESKEENGAQEARLLGLVMVPGQ 56
M + G D N++L EY ++ ++ L +++ G
Sbjct: 45 MKGDKEFSGVLRGFDEYVNMVLDDVQEYGFKADEEDISGGNKKLKRVMVNRLETILLSGN 104
Query: 57 HI 58
++
Sbjct: 105 NV 106
>4emg_A Probable U6 snRNA-associated SM-like protein LSM3; SM fold, mRNA
decay, LSM proteins, RNA binding protein; 2.70A
{Schizosaccharomyces pombe}
Length = 93
Score = 37.1 bits (86), Expect = 2e-05
Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYL--SPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ R L G D N++LG E + + K++ + ++ V G +
Sbjct: 26 LRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLFVRGDSV 85
>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2
complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP
biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens}
PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G
Length = 76
Score = 31.2 bits (71), Expect = 0.004
Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 11/58 (18%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ GR + G D N+++ C E + + +G+V++ G I
Sbjct: 21 LNGGRHVQGILRGFDPFMNLVIDECVEMATSG-----------QQNNIGMVVIRGNSI 67
>1b34_B Protein (small nuclear ribonucleoprotein SM D2); snRNP, splicing,
spliceosome, core snRNP domain, systemi erythematosus,
SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP:
b.38.1.1 PDB: 2y9a_C 2y9b_C 2y9c_C 2y9d_C 3cw1_C 3pgw_Y*
3s6n_B
Length = 118
Score = 29.9 bits (67), Expect = 0.022
Identities = 10/59 (16%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Query: 3 DGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEA---RLLGLVMVPGQHI 58
+ + L+G DR N++L + E + K + ++ R + + + G +
Sbjct: 48 NNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSV 106
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein,
SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus
solfataricus} SCOP: b.38.1.1
Length = 81
Score = 28.4 bits (64), Expect = 0.040
Identities = 9/58 (15%), Positives = 21/58 (36%), Gaps = 11/58 (18%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ + + G D+ N++L E S + LG +++ G ++
Sbjct: 26 LKGNKEVRGMLRSYDQHMNLVLSDSEEIQSDG-----------SGKKLGTIVIRGDNV 72
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and
PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A
{Schizosaccharomyces pombe} PDB: 3swn_A
Length = 94
Score = 28.7 bits (64), Expect = 0.041
Identities = 10/58 (17%), Positives = 18/58 (31%), Gaps = 10/58 (17%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
M R GT + D N++L EY + +++ G +
Sbjct: 37 MKSEREFAGTLVGFDDYVNIVLKDVTEY----------DTVTGVTEKHSEMLLNGNGM 84
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers
form 35-stranded beta-sheet I heptamer, structural
genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1
PDB: 1lnx_A*
Length = 81
Score = 28.1 bits (63), Expect = 0.063
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEV 33
+ D + G D+ N++L E + V
Sbjct: 28 LRDSHEIRGILRSFDQHVNLLLEDAEEIIDGNV 60
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein;
1.70A {Methanothermobacterthermautotrophicus} SCOP:
b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A
Length = 83
Score = 28.1 bits (63), Expect = 0.074
Identities = 13/58 (22%), Positives = 19/58 (32%), Gaps = 11/58 (18%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ R G D N++L E E R LG V++ G +I
Sbjct: 32 LKGDREFRGVLKSFDLHMNLVLNDAEELEDGE-----------VTRRLGTVLIRGDNI 78
>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics,
structural genomics consortium, SGC, TR; HET: STU; 2.29A
{Homo sapiens}
Length = 384
Score = 28.1 bits (63), Expect = 0.12
Identities = 7/19 (36%), Positives = 12/19 (63%), Gaps = 2/19 (10%)
Query: 25 CG--EYLSPEVFESKEENG 41
G Y++PE+F S++ G
Sbjct: 175 AGTKPYMAPEMFSSRKGAG 193
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding
protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP:
b.38.1.1 PDB: 1i5l_A*
Length = 77
Score = 26.9 bits (60), Expect = 0.15
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 11/58 (18%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ GR GT D N++L E + E R +G V++ G +
Sbjct: 21 LKGGREFRGTLDGYDIHMNLVLLDAEEIQNGE-----------VVRKVGSVVIRGDTV 67
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.5 bits (60), Expect = 0.24
Identities = 7/50 (14%), Positives = 14/50 (28%), Gaps = 14/50 (28%)
Query: 5 RVLVGTFLCTDRDANVILGSCGEYLSP----EVFESKEENGAQEARLLGL 50
++L+ T R V ++LS + + L
Sbjct: 267 KILL-----TTRFKQVT-----DFLSAATTTHISLDHHSMTLTPDEVKSL 306
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A
{Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Length = 75
Score = 26.1 bits (58), Expect = 0.30
Identities = 9/58 (15%), Positives = 18/58 (31%), Gaps = 11/58 (18%)
Query: 1 MTDGRVLVGTFLCTDRDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMVPGQHI 58
+ G G + D NV+L E + G +++ G ++
Sbjct: 21 LKKGFEFRGRLIGYDIHLNVVLADAEMIQDGE-----------VVKRYGKIVIRGDNV 67
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase,
inhibitor, transf transferase inhibitor complex; HET:
0HD; 2.29A {Homo sapiens} PDB: 3tv7_A* 2etr_A* 2esm_A*
2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A*
2h9v_A*
Length = 410
Score = 27.0 bits (60), Expect = 0.30
Identities = 8/19 (42%), Positives = 13/19 (68%), Gaps = 2/19 (10%)
Query: 25 CG--EYLSPEVFESKEENG 41
G +Y+SPEV +S+ +G
Sbjct: 230 VGTPDYISPEVLKSQGGDG 248
>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding,
serine/threonine-protein kinase, ATP-binding,
transferase, coiled coil, cell division, kinase; HET:
TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A*
3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A*
3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A*
2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...
Length = 284
Score = 26.8 bits (60), Expect = 0.36
Identities = 8/17 (47%), Positives = 10/17 (58%), Gaps = 2/17 (11%)
Query: 24 SCG--EYLSPEVFESKE 38
CG +YL PE+ E K
Sbjct: 172 MCGTLDYLPPEMIEGKT 188
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci
inhibitory kinase; structural genomics, structural
genomics consortium, SGC; 1.70A {Homo sapiens}
Length = 311
Score = 26.5 bits (59), Expect = 0.40
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 6/40 (15%)
Query: 3 DGRVLVGTF-----LCTDRDANVILGSCGEYLSPEVFESK 37
GR +G F L T V G Y++PE+ +
Sbjct: 193 RGRCKLGDFGLLVELGTAGAGEVQEGDP-RYMAPELLQGS 231
>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase,
transferase; HET: ANP; 2.60A {Plasmodium falciparum}
PDB: 2pmn_X* 2pmo_X*
Length = 348
Score = 26.6 bits (59), Expect = 0.43
Identities = 6/17 (35%), Positives = 10/17 (58%), Gaps = 2/17 (11%)
Query: 24 SCG--EYLSPEVFESKE 38
S G E++ PE F ++
Sbjct: 210 SRGTYEFMPPEFFSNES 226
>1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB,
inhibitor, LY333531, diabetes, cancer, transferase,
serine/threonine-protein kinase; HET: SEP LY4; 1.7A
{Homo sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A*
1uu7_A* 1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A*
3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A*
3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* ...
Length = 310
Score = 26.4 bits (59), Expect = 0.50
Identities = 6/15 (40%), Positives = 9/15 (60%), Gaps = 2/15 (13%)
Query: 25 CG--EYLSPEVFESK 37
G +Y+SPE+ K
Sbjct: 193 VGTAQYVSPELLTEK 207
>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors,
virtual screening, X-RAY CO- crystal analysis,
structure-based drug design (SBDD); HET: MMH; 1.90A
{Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A*
2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A*
3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A*
3lau_A* 2wtv_A* ...
Length = 279
Score = 26.0 bits (58), Expect = 0.56
Identities = 7/17 (41%), Positives = 10/17 (58%), Gaps = 2/17 (11%)
Query: 24 SCG--EYLSPEVFESKE 38
CG +YL PE+ E +
Sbjct: 167 LCGTLDYLPPEMIEGRM 183
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba
histolytica} PDB: 3bm5_A*
Length = 343
Score = 26.0 bits (58), Expect = 0.58
Identities = 10/27 (37%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 20 VILGSCGE-YLSPEVFESKEENGAQEA 45
+I+ SCGE YLS ++++ K+E +
Sbjct: 304 IIVPSCGERYLSTDLYKIKDEGTKIQI 330
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA;
HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Length = 437
Score = 26.3 bits (58), Expect = 0.61
Identities = 6/18 (33%), Positives = 11/18 (61%), Gaps = 2/18 (11%)
Query: 25 CG--EYLSPEVFESKEEN 40
G +Y+SPE+ ++ E
Sbjct: 237 VGTPDYISPEILQAMEGG 254
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase,
ATP-BI nucleotide-binding, cardiac contractility, muscle
different; HET: BI8; 2.80A {Homo sapiens}
Length = 412
Score = 25.8 bits (57), Expect = 0.75
Identities = 6/22 (27%), Positives = 10/22 (45%), Gaps = 2/22 (9%)
Query: 25 CG--EYLSPEVFESKEENGAQE 44
G +YLSPE+ ++
Sbjct: 224 VGTPDYLSPEILQAVGGGPGTG 245
>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open
conformation, transferase; HET: TPO; 2.80A
{Saccharomyces cerevisiae} SCOP: d.144.1.7
Length = 318
Score = 25.6 bits (57), Expect = 1.0
Identities = 7/15 (46%), Positives = 11/15 (73%), Gaps = 2/15 (13%)
Query: 25 CG--EYLSPEVFESK 37
CG +Y++PEV +K
Sbjct: 164 CGTPDYIAPEVVSTK 178
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU;
CAMP-dependent protein kinase,catalytic mechanism, ATP
hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A
{Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E*
1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A*
1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A*
3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Length = 350
Score = 25.3 bits (56), Expect = 1.2
Identities = 8/15 (53%), Positives = 10/15 (66%), Gaps = 2/15 (13%)
Query: 25 CG--EYLSPEVFESK 37
CG E L+PE+ SK
Sbjct: 199 CGTPEALAPEIILSK 213
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation,
kinase domain ubiquitin-like domain, kinase, substrate
binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Length = 676
Score = 25.4 bits (55), Expect = 1.2
Identities = 7/17 (41%), Positives = 11/17 (64%), Gaps = 2/17 (11%)
Query: 24 SCG--EYLSPEVFESKE 38
G +YL+PE+ E K+
Sbjct: 183 FVGTLQYLAPELLEQKK 199
>3pvu_A Beta-adrenergic receptor kinase 1; transferase,
serine/threonine-protein kinase, ATP-binding, I
membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A*
3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A*
1bak_A
Length = 695
Score = 25.2 bits (55), Expect = 1.2
Identities = 8/29 (27%), Positives = 11/29 (37%), Gaps = 2/29 (6%)
Query: 12 LCTDRDANVILGSCG--EYLSPEVFESKE 38
L D S G Y++PEV +
Sbjct: 338 LACDFSKKKPHASVGTHGYMAPEVLQKGV 366
>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling,
transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A
3zuu_A 3uc4_A 3ujg_A 3udb_A
Length = 361
Score = 25.4 bits (56), Expect = 1.3
Identities = 7/22 (31%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
Query: 24 SCG--EYLSPEVFESKEENGAQ 43
+ G Y++PEV +E +G
Sbjct: 177 TVGTPAYIAPEVLLRQEYDGKI 198
>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK,
STK18, PSI, structural genomics, protein structure
initiative; HET: ANP; 2.25A {Homo sapiens}
Length = 278
Score = 24.4 bits (54), Expect = 2.3
Identities = 6/17 (35%), Positives = 8/17 (47%), Gaps = 2/17 (11%)
Query: 24 SCG--EYLSPEVFESKE 38
CG Y+SPE+
Sbjct: 172 LCGTPNYISPEIATRSA 188
>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint,
transferase-transferase inhib complex; HET: S25; 1.60A
{Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A*
2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*
Length = 323
Score = 24.6 bits (54), Expect = 2.4
Identities = 6/22 (27%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
Query: 24 SCG--EYLSPEVFESKEENGAQ 43
CG Y++PE+ + +E +
Sbjct: 167 MCGTLPYVAPELLKRREFHAEP 188
>2eue_A Carbon catabolite derepressing protein kinase; kinase domain; 2.20A
{Saccharomyces cerevisiae} PDB: 3fam_A 3hyh_A 3dae_A
2fh9_A 3mn3_A
Length = 275
Score = 24.1 bits (53), Expect = 3.1
Identities = 9/22 (40%), Positives = 11/22 (50%), Gaps = 2/22 (9%)
Query: 24 SCG--EYLSPEVFESKEENGAQ 43
SCG Y +PEV K G +
Sbjct: 171 SCGSPNYAAPEVISGKLYAGPE 192
>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET:
YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A*
2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A*
2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A*
2x8i_A* 2xey_A* 2xez_A* ...
Length = 276
Score = 24.1 bits (53), Expect = 3.2
Identities = 6/22 (27%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
Query: 24 SCG--EYLSPEVFESKEENGAQ 43
CG Y++PE+ + +E +
Sbjct: 167 MCGTLPYVAPELLKRREFHAEP 188
>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2;
ATP-binding, cholesterol biosynthesis, fatty acid
biosynthesis;kinase, lipid synthesis; 1.85A {Homo
sapiens} PDB: 3aqv_A* 2yza_A*
Length = 276
Score = 23.7 bits (52), Expect = 3.7
Identities = 8/22 (36%), Positives = 11/22 (50%), Gaps = 2/22 (9%)
Query: 24 SCG--EYLSPEVFESKEENGAQ 43
SCG Y +PEV + G +
Sbjct: 170 SCGSPNYAAPEVISGRLYAGPE 191
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis,
transferase, ENZ kinetics, enzymatic sythesis of novel
compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB:
2bhs_A* 2bht_A* 2jc3_A*
Length = 303
Score = 22.9 bits (50), Expect = 7.7
Identities = 7/25 (28%), Positives = 11/25 (44%), Gaps = 1/25 (4%)
Query: 20 VILGSCGE-YLSPEVFESKEENGAQ 43
I+ G+ YLS VF + +
Sbjct: 277 AIICDRGDRYLSTGVFGEEHFSQGA 301
>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster,
Cys59Ser variant, electron transport; 1.05A {Aquifex
aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A
Length = 110
Score = 22.5 bits (48), Expect = 9.4
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 11 FLCTD-RDANVILGSCGEYLSPEVFESKEENGAQEARLLGLVMV 53
F+C R GSC + S EVF++ E + +L ++
Sbjct: 7 FVCVQDRPPGHPQGSCAQRGSREVFQAFMEKIQTDPQLFMTTVI 50
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.138 0.408
Gapped
Lambda K H
0.267 0.0723 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 936,904
Number of extensions: 39911
Number of successful extensions: 150
Number of sequences better than 10.0: 1
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 37
Length of query: 60
Length of database: 6,701,793
Length adjustment: 31
Effective length of query: 29
Effective length of database: 5,836,242
Effective search space: 169251018
Effective search space used: 169251018
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.4 bits)