BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12224
(904 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4F91|B Chain B, Brr2 Helicase Region
Length = 1724
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 106/219 (48%), Gaps = 27/219 (12%)
Query: 163 EIIERPSDEIEVP------QLIRQIPNLGEKNRERPLYHKYSIKARALIYAHLSNMQLTS 216
EII ++ +P L+RQ+ P ++ +K L+ AHLS MQL++
Sbjct: 1446 EIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSA 1505
Query: 217 ETLEADRMYIVKKCPYLLQEMVTCISQLILLAYAQRVPRLIHIETLENVMKLCPMIVQGM 276
E L++D I+ K L+Q V +S L+ P L M+L M+ Q M
Sbjct: 1506 E-LQSDTEEILSKAIRLIQACVDVLSSNGWLS-----PALA-------AMELAQMVTQAM 1552
Query: 277 WDFKNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKV 336
W + L QLP+ T +H+K C + ++S+ +M++EER ++++ + D Q +D+ +
Sbjct: 1553 WSKDSYLKQLPHFTSEHIKR--CTDKGVESVFDIMEMEDEERNALLQ-LTDSQIADVARF 1609
Query: 337 LGNMPYVDLHVQPEVIDDEATTEYTAGAIITVTCTLMRK 375
P ++L EV+D ++ +G + V L R+
Sbjct: 1610 CNRYPNIELSY--EVVDKDSI---RSGGPVVVLVQLERE 1643
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 7/90 (7%)
Query: 540 LEGRSKQSHSVHCPRFPEDKQEFWWIYISDRKSRTLLTSPYHITELVDQE--QVQLKFTA 597
LE + + V P FP+ ++E WW+ I D KS +L++ I L Q+ +V+L F A
Sbjct: 1640 LEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLIS----IKRLTLQQKAKVKLDFVA 1695
Query: 598 PRWPGVYTFSVCLRCDSYLGFDQMQDIKLD 627
P G + +++ D+Y+G DQ +D
Sbjct: 1696 PA-TGAHNYTLYFMSDAYMGCDQEYKFSVD 1724
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 58/124 (46%), Gaps = 19/124 (15%)
Query: 164 IIERPSDEIEVPQLIRQIPNLGEKNRERPLYHKYSIKARALIYAHLSNMQLTSETLEADR 223
I R +++E+ +L+ ++P +++ E P S K L+ A +S ++L L AD
Sbjct: 626 ITVREEEKLELQKLLERVPIPVKESIEEP-----SAKINVLLQAFISQLKLEGFALMADM 680
Query: 224 MYIVKKCPYLLQEMVTCISQLIL-LAYAQRVPRLIHIETLENVMKLCPMIVQGMWDFKNP 282
+Y+ + L++ I +++L +AQ + + LC MI + MW P
Sbjct: 681 VYVTQSAGRLMR----AIFEIVLNRGWAQLT---------DKTLNLCKMIDKRMWQSMCP 727
Query: 283 LLQL 286
L Q
Sbjct: 728 LRQF 731
>pdb|4F92|B Chain B, Brr2 Helicase Region S1087l
pdb|4F93|B Chain B, Brr2 Helicase Region S1087l, Mg-Atp
Length = 1724
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 106/219 (48%), Gaps = 27/219 (12%)
Query: 163 EIIERPSDEIEVP------QLIRQIPNLGEKNRERPLYHKYSIKARALIYAHLSNMQLTS 216
EII ++ +P L+RQ+ P ++ +K L+ AHLS MQL++
Sbjct: 1446 EIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSA 1505
Query: 217 ETLEADRMYIVKKCPYLLQEMVTCISQLILLAYAQRVPRLIHIETLENVMKLCPMIVQGM 276
E L++D I+ K L+Q V +S L+ P L M+L M+ Q M
Sbjct: 1506 E-LQSDTEEILSKAIRLIQACVDVLSSNGWLS-----PALA-------AMELAQMVTQAM 1552
Query: 277 WDFKNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKV 336
W + L QLP+ T +H+K C + ++S+ +M++EER ++++ + D Q +D+ +
Sbjct: 1553 WSKDSYLKQLPHFTSEHIKR--CTDKGVESVFDIMEMEDEERNALLQ-LTDSQIADVARF 1609
Query: 337 LGNMPYVDLHVQPEVIDDEATTEYTAGAIITVTCTLMRK 375
P ++L EV+D ++ +G + V L R+
Sbjct: 1610 CNRYPNIELSY--EVVDKDSI---RSGGPVVVLVQLERE 1643
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 7/90 (7%)
Query: 540 LEGRSKQSHSVHCPRFPEDKQEFWWIYISDRKSRTLLTSPYHITELVDQE--QVQLKFTA 597
LE + + V P FP+ ++E WW+ I D KS +L++ I L Q+ +V+L F A
Sbjct: 1640 LEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLIS----IKRLTLQQKAKVKLDFVA 1695
Query: 598 PRWPGVYTFSVCLRCDSYLGFDQMQDIKLD 627
P G + +++ D+Y+G DQ +D
Sbjct: 1696 PA-TGAHNYTLYFMSDAYMGCDQEYKFSVD 1724
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 58/124 (46%), Gaps = 19/124 (15%)
Query: 164 IIERPSDEIEVPQLIRQIPNLGEKNRERPLYHKYSIKARALIYAHLSNMQLTSETLEADR 223
I R +++E+ +L+ ++P +++ E P S K L+ A +S ++L L AD
Sbjct: 626 ITVREEEKLELQKLLERVPIPVKESIEEP-----SAKINVLLQAFISQLKLEGFALMADM 680
Query: 224 MYIVKKCPYLLQEMVTCISQLIL-LAYAQRVPRLIHIETLENVMKLCPMIVQGMWDFKNP 282
+Y+ + L ++ I +++L +AQ + + LC MI + MW P
Sbjct: 681 VYVTQ----LAGRLMRAIFEIVLNRGWAQLT---------DKTLNLCKMIDKRMWQSMCP 727
Query: 283 LLQL 286
L Q
Sbjct: 728 LRQF 731
>pdb|2Q0Z|X Chain X, Crystal Structure Of Q9p172SEC63 FROM HOMO SAPIENS.
Northeast Structural Genomics Target Hr1979
Length = 339
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 7/94 (7%)
Query: 540 LEGRSKQSHSVHCPRFPEDKQEFWWIYISDRKSRTLLTSPYHITELVDQE--QVQLKFTA 597
LE + + V P FP+ ++E WW+ I D KS +L++ I L Q+ +V+L F A
Sbjct: 244 LEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLIS----IKRLTLQQKAKVKLDFVA 299
Query: 598 PRWPGVYTFSVCLRCDSYLGFDQMQDIKLDVKEA 631
P G + +++ D+Y G DQ +DVKEA
Sbjct: 300 PA-TGAHNYTLYFXSDAYXGCDQEYKFSVDVKEA 332
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 101/219 (46%), Gaps = 27/219 (12%)
Query: 163 EIIERPSDEIEVP------QLIRQIPNLGEKNRERPLYHKYSIKARALIYAHLSNMQLTS 216
EII ++ +P L+RQ+ P ++ +K L+ AHLS QL++
Sbjct: 50 EIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRXQLSA 109
Query: 217 ETLEADRMYIVKKCPYLLQEMVTCISQLILLAYAQRVPRLIHIETLENVMKLCPMIVQGM 276
E L++D I+ K L+Q V +S L+ P L E + V Q
Sbjct: 110 E-LQSDTEEILSKAIRLIQACVDVLSSNGWLS-----PALAAXELAQXV-------TQAX 156
Query: 277 WDFKNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKV 336
W + L QLP+ T +H+K C + ++S+ + ++EER ++++ + D Q +D+ +
Sbjct: 157 WSKDSYLKQLPHFTSEHIKR--CTDKGVESVFDIXEXEDEERNALLQ-LTDSQIADVARF 213
Query: 337 LGNMPYVDLHVQPEVIDDEATTEYTAGAIITVTCTLMRK 375
P ++L EV+D ++ +G + V L R+
Sbjct: 214 CNRYPNIELSY--EVVDKDSI---RSGGPVVVLVQLERE 247
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 56.2 bits (134), Expect = 7e-08, Method: Composition-based stats.
Identities = 32/72 (44%), Positives = 47/72 (65%), Gaps = 10/72 (13%)
Query: 3 GKSRTPLKPSGASEASIKKAYRKQSLILHPDK--ETGDEKAFMKLTKAYQALTDEESRRN 60
G SRT AS+A IKKAY+K + HPDK + G E F++++KAY+ L++EE R N
Sbjct: 24 GVSRT------ASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTN 77
Query: 61 FEKYGNPDGPGA 72
++ YG+ GP +
Sbjct: 78 YDHYGS--GPSS 87
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/55 (47%), Positives = 37/55 (67%), Gaps = 2/55 (3%)
Query: 13 GASEASIKKAYRKQSLILHPD--KETGDEKAFMKLTKAYQALTDEESRRNFEKYG 65
GAS+ IK+AYR+Q+L HPD KE G E+ F ++ +AY L+D R F++YG
Sbjct: 14 GASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYG 68
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 36/52 (69%)
Query: 14 ASEASIKKAYRKQSLILHPDKETGDEKAFMKLTKAYQALTDEESRRNFEKYG 65
A+E +KK YRK +L HPDK TGD + F ++++A++ L D + R +++YG
Sbjct: 20 ANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREIYDQYG 71
>pdb|3IM1|A Chain A, Structure Of The C-Terminal Sec63 Unit Of Yeast Brr2,
P212121 Form
pdb|3IM2|A Chain A, Structure Of The C-Terminal Sec63 Unit Of Yeast Brr2,
P41212 Form
Length = 328
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 99/220 (45%), Gaps = 32/220 (14%)
Query: 133 AFFQITPHMA-------LKRVLMILGASLEFDRRFNSEIIERPSDEIEVPQLIRQIPNLG 185
+FF I ++ LK +L +L ++EF+ + R D + +L +++P
Sbjct: 24 SFFTIQSFVSSLSNTSTLKNMLYVLSTAVEFES-----VPLRKGDRALLVKLSKRLP--- 75
Query: 186 EKNRERPLYHKYSIKARALIYAHLSNMQLTSETLEADRMYIVKKCPYLLQEMVTCISQLI 245
+ E S K L+ A+ S ++L + + D I++K L+ +V +S
Sbjct: 76 LRFPEHTSSGSVSFKVFLLLQAYFSRLELPVD-FQNDLKDILEKVVPLINVVVDILSANG 134
Query: 246 LLAYAQRVPRLIHIETLENVMKLCPMIVQGMWDFKNPLLQLPYVTDDHLKHFICKKRYIK 305
L M L M++QG+WD NPL Q+P+ + L+ CK+ ++
Sbjct: 135 YLNAT-------------TAMDLAQMLIQGVWDVDNPLRQIPHFNNKILEK--CKEINVE 179
Query: 306 SLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMPYVDL 345
++ +++EER ++ + D Q + + + N P V+L
Sbjct: 180 TVYDIMALEDEERDEILT-LTDSQLAQVAAFVNNYPNVEL 218
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 51/113 (45%), Gaps = 20/113 (17%)
Query: 532 GLNKRDKVLEGRSK------------QSHSVHCPRFPEDKQEFWWIYISDRKSRTLLTSP 579
LN D ++ G + ++ V ++P DK E WW+ + + + L
Sbjct: 221 SLNNSDSLISGVKQKITIQLTRDVEPENLQVTSEKYPFDKLESWWLVLGEVSKKEL---- 276
Query: 580 YHITELV---DQEQVQLKFTAPRWPGVYTFSVCLRCDSYLGFDQMQDIKLDVK 629
Y I ++ + +Q +L+F P G + ++ CDSYL D+ +++VK
Sbjct: 277 YAIKKVTLNKETQQYELEFDTPT-SGKHNLTIWCVCDSYLDADKELSFEINVK 328
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108)
Of The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 50.4 bits (119), Expect = 4e-06, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 38/56 (67%), Gaps = 3/56 (5%)
Query: 14 ASEASIKKAYRKQSLILHPDKETGDEKA---FMKLTKAYQALTDEESRRNFEKYGN 66
A E I+KAY++ ++ HPD+ GD++A F ++ +AY+ LTD + R +++YG+
Sbjct: 15 AEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGH 70
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 50.1 bits (118), Expect = 5e-06, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 4/59 (6%)
Query: 11 PSGASEASIKKAYRKQSLILHPDKETGD----EKAFMKLTKAYQALTDEESRRNFEKYG 65
P AS IKKAYR+++L HPDK + EK F ++ +AY+ L+D+ R +++YG
Sbjct: 11 PRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYG 69
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 50.1 bits (118), Expect = 6e-06, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 38/56 (67%), Gaps = 3/56 (5%)
Query: 14 ASEASIKKAYRKQSLILHPDKETGDEKA---FMKLTKAYQALTDEESRRNFEKYGN 66
A E I+KAY++ ++ HPD+ GD++A F ++ +AY+ LTD + R +++YG+
Sbjct: 15 AEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGH 70
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 12
Length = 78
Score = 50.1 bits (118), Expect = 6e-06, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 39/62 (62%), Gaps = 4/62 (6%)
Query: 13 GASEASIKKAYRKQSLILHPDKE--TGDEKAFMKLTKAYQALTDEESRRNFEKYGNPDGP 70
GAS+ +KKAYR+ +L HPDK G +AF + AY L++ E R+ ++++G+ GP
Sbjct: 18 GASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGS--GP 75
Query: 71 GA 72
+
Sbjct: 76 SS 77
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 37/55 (67%), Gaps = 3/55 (5%)
Query: 14 ASEASIKKAYRKQSLILHPDKETGDEKA---FMKLTKAYQALTDEESRRNFEKYG 65
AS I++A++K +L LHPDK + A F+K+ +AY+ L DE+ R+ ++KYG
Sbjct: 33 ASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYG 87
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 37/55 (67%), Gaps = 3/55 (5%)
Query: 14 ASEASIKKAYRKQSLILHPDKETGDEKA---FMKLTKAYQALTDEESRRNFEKYG 65
AS I++A++K +L LHPDK + A F+K+ +AY+ L DE+ R+ ++KYG
Sbjct: 14 ASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYG 68
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 38/56 (67%), Gaps = 3/56 (5%)
Query: 14 ASEASIKKAYRKQSLILHPDKETGDEKA---FMKLTKAYQALTDEESRRNFEKYGN 66
A E I+KAY++ ++ HPD+ GD++A F ++ +AY+ LTD + R +++YG+
Sbjct: 15 AEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGH 70
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human
Protein Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 41/66 (62%), Gaps = 6/66 (9%)
Query: 11 PSGASEASIKKAYRKQSLILHPDKETGD----EKAFMKLTKAYQALTDEESRRNFEKYGN 66
P AS +IKKAYRK +L HPDK + E+ F ++ +AY+ L+D + R +++YG+
Sbjct: 18 PRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGS 77
Query: 67 PDGPGA 72
GP +
Sbjct: 78 --GPSS 81
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
Query: 9 LKPSGASEASIKKAYRKQSLILHPDKETGDEKAFMKLTKAYQALTDEESRRNFEKYG 65
+KP AS+ +KKAYRK +L HPDK + F ++++AY+ L+DE+ R+ +++ G
Sbjct: 16 VKPD-ASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQIYDQGG 71
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 47.4 bits (111), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
Query: 11 PSGASEASIKKAYRKQSLILHPDKETGDEKA---FMKLTKAYQALTDEESRRNFEKYGNP 67
P AS+ IKKAY + + HPD D KA F +L +AY+ L+DE R+ ++ YG+
Sbjct: 16 PRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGS- 74
Query: 68 DGPGA 72
GP +
Sbjct: 75 -GPSS 78
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human
Williams- Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 46.6 bits (109), Expect = 7e-05, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 12/80 (15%)
Query: 5 SRTPLK-----PSGASEASIKKAYRKQSLILHPDKETGDEKA---FMKLTKAYQALTDEE 56
SRT L PS A++A IK AY +Q + HPD+ +G +A F ++++AY L
Sbjct: 15 SRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSAT 74
Query: 57 SRRNFEKYGNPD----GPGA 72
RR +++ D GPG+
Sbjct: 75 LRRKYDRGLLSDEDLRGPGS 94
>pdb|3HIB|A Chain A, Crystal Structure Of The Second Sec63 Domain Of Yeast Brr2
Length = 318
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 268 LCPMIVQGMWDFKNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMND 327
L ++QG+WD NPL Q+P+ + L+ CK+ ++++ +++EER ++ + D
Sbjct: 134 LAQXLIQGVWDVDNPLRQIPHFNNKILEK--CKEINVETVYDIXALEDEERDEILT-LTD 190
Query: 328 EQYSDMLKVLGNMPYVDL 345
Q + + + N P V+L
Sbjct: 191 SQLAQVAAFVNNYPNVEL 208
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 8/83 (9%)
Query: 550 VHCPRFPEDKQEFWWIYISDRKSRTLLTSPYHITELV---DQEQVQLKFTAPRWPGVYTF 606
V ++P DK E WW+ + + + L Y I ++ + +Q +L+F P G +
Sbjct: 241 VTSEKYPFDKLESWWLVLGEVSKKEL----YAIKKVTLNKETQQYELEFDTPT-SGKHNL 295
Query: 607 SVCLRCDSYLGFDQMQDIKLDVK 629
++ CDSYL D+ +++VK
Sbjct: 296 TIWCVCDSYLDADKELSFEINVK 318
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like
Domain From Homo Sapiens
Length = 71
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
Query: 9 LKPSGASEASIKKAYRKQSLILHPDKETGDEKAFMKLTKAYQALTDEESRRNFEKYG 65
+KP+ A++ +KKAYRK +L HPDK + + F ++++AY+ L+D + R ++K G
Sbjct: 14 VKPN-ATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYDKGG 69
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 9
Length = 88
Score = 43.5 bits (101), Expect = 5e-04, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 11 PSGASEASIKKAYRKQSLILHPDKETGD--EKAFMKLTKAYQALTDEESRRNFEKYGN 66
P ASE IKKA+ K ++ HPDK E F ++ +AY+ L+D R+ ++ G+
Sbjct: 16 PKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYDTLGH 73
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 43.1 bits (100), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 12 SGASEASIKKAYRKQSLILHPDKETGD----EKAFMKLTKAYQALTDEESRRNFEKYG 65
+ AS IKKAYRK +L HPDK + EK F +++AY+ L+D + R +++ G
Sbjct: 19 ASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAG 76
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily
C Menber 5
Length = 109
Score = 42.7 bits (99), Expect = 9e-04, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 14 ASEASIKKAYRKQSLILHPDKETGDEKA---FMKLTKAYQALTDEESRRNFEKYGN 66
A+ IKK+YRK +L HPDK + +A F ++ A+ LTD R ++KYG+
Sbjct: 29 ATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGS 84
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human
Ras- Associated Protein Rap1
Length = 90
Score = 38.9 bits (89), Expect = 0.014, Method: Composition-based stats.
Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 9 LKPSGASEASIKKAYRKQSLILHPDK--ETGDEKAFMKLTKAYQAL 52
+KP GAS + KAYRK +++LHPDK G E AF + A AL
Sbjct: 35 VKP-GASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTAL 79
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 18 SIKKAYRKQSLILHPD--KETGDEKAFMKLTKAYQALTDEESRRNFEK 63
+IK AYR+ + HPD KE E F L +A++ L DE+ R +++
Sbjct: 44 TIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYDQ 91
>pdb|1XI5|J Chain J, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|K Chain K, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|L Chain L, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|M Chain M, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|N Chain N, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|O Chain O, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|P Chain P, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|Q Chain Q, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|R Chain R, Clathrin D6 Coat With Auxilin J-Domain
Length = 114
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 10/61 (16%)
Query: 5 SRTPLKPSGASE----ASIKKAYRKQSLILHPDKETGD------EKAFMKLTKAYQALTD 54
T KP G ++ +KK YRK L++HPDK TG + FM+L A+ +
Sbjct: 48 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFEN 107
Query: 55 E 55
+
Sbjct: 108 Q 108
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 36/58 (62%), Gaps = 9/58 (15%)
Query: 14 ASEASIKKAYRKQSLILHPDKETGDEKA---------FMKLTKAYQALTDEESRRNFE 62
A+ + +K+ Y+K L+ HPDK++ D A F+++ +A++ L +EE++R ++
Sbjct: 22 ANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYD 79
>pdb|1NZ6|A Chain A, Crystal Structure Of Auxilin J-Domain
pdb|1NZ6|B Chain B, Crystal Structure Of Auxilin J-Domain
Length = 101
Score = 33.9 bits (76), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 5 SRTPLKPSGASE----ASIKKAYRKQSLILHPDKETG 37
T KP G ++ +KK YRK L++HPDK TG
Sbjct: 35 GETKWKPVGXADLVTPEQVKKVYRKAVLVVHPDKATG 71
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 18 SIKKAYRKQSLILHPD--KETGDEKAFMKLTKAYQALTDEESRRNFEK 63
+IK AYR+ + HPD KE E F ++ +A++ L+DE+ R +++
Sbjct: 21 TIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQ 68
>pdb|1N4C|A Chain A, Nmr Structure Of The J-Domain And Clathrin Substrate
Binding Domain Of Bovine Auxilin
Length = 182
Score = 33.5 bits (75), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 10/61 (16%)
Query: 5 SRTPLKPSGASE----ASIKKAYRKQSLILHPDKETGD------EKAFMKLTKAYQALTD 54
T KP G ++ +KK YRK L++HPDK TG + FM+L A+ +
Sbjct: 116 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFEN 175
Query: 55 E 55
+
Sbjct: 176 Q 176
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like
Protein
Length = 94
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 36/58 (62%), Gaps = 9/58 (15%)
Query: 14 ASEASIKKAYRKQSLILHPDKETGDEKA---------FMKLTKAYQALTDEESRRNFE 62
A+ + +K+ Y+K L+ HPDK++ D A F+++ +A++ L +EE+++ ++
Sbjct: 28 ANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYD 85
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
C Menber 12
Length = 112
Score = 33.1 bits (74), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Query: 23 YRKQSLILHPDKETGDEKA---FMKLTKAYQALTDEESRRNFEKY 64
++ ++L HPDK + KA F KL KA + LT+EESR ++ +
Sbjct: 41 FKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHW 85
>pdb|1A75|B Chain B, Whiting Parvalbumin
Length = 109
Score = 32.7 bits (73), Expect = 0.94, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 10/67 (14%)
Query: 12 SGASEASIKKAYRKQSLILHPDK----ETGDEKAFMKLTKA-YQALTDEESRRNFEKYGN 66
SG S IKKA+ + + DK E + K F+++ KA +ALTD E++ F K G+
Sbjct: 37 SGKSADDIKKAF----VFIDQDKSGFIEEDELKLFLQVFKAGARALTDAETKA-FLKAGD 91
Query: 67 PDGPGAM 73
DG GA+
Sbjct: 92 SDGDGAI 98
>pdb|1A75|A Chain A, Whiting Parvalbumin
Length = 108
Score = 32.7 bits (73), Expect = 0.94, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 10/67 (14%)
Query: 12 SGASEASIKKAYRKQSLILHPDK----ETGDEKAFMKLTKA-YQALTDEESRRNFEKYGN 66
SG S IKKA+ + + DK E + K F+++ KA +ALTD E++ F K G+
Sbjct: 36 SGKSADDIKKAF----VFIDQDKSGFIEEDELKLFLQVFKAGARALTDAETKA-FLKAGD 90
Query: 67 PDGPGAM 73
DG GA+
Sbjct: 91 SDGDGAI 97
>pdb|2QWN|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex
Of Bovine Hsc70 (1-386aa)r171c And Bovine Auxilin
(810-910aa)d876c In The AdpPi State
Length = 94
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 10/61 (16%)
Query: 5 SRTPLKPSGASE----ASIKKAYRKQSLILHPDKETGD------EKAFMKLTKAYQALTD 54
T KP G ++ +KK YRK L++HP K TG + FM+L A+ +
Sbjct: 33 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 92
Query: 55 E 55
+
Sbjct: 93 Q 93
>pdb|2QWO|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex
Of Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The AdpPi Form #1
pdb|2QWP|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex
Of Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The AdpPi Form #2
pdb|2QWQ|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex
Of Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The Amppnp Hydrolyzed Form
pdb|2QWR|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex
Of Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The Amppnp Intact Form
Length = 92
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 10/61 (16%)
Query: 5 SRTPLKPSGASE----ASIKKAYRKQSLILHPDKETGD------EKAFMKLTKAYQALTD 54
T KP G ++ +KK YRK L++HP K TG + FM+L A+ +
Sbjct: 32 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91
Query: 55 E 55
+
Sbjct: 92 Q 92
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 31.6 bits (70), Expect = 1.8, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 7/57 (12%)
Query: 19 IKKAYRKQSLILHPDKETGDEKA------FMKLTKAYQALTDEESRRNFEKY-GNPD 68
+ KAYR + HPD+ E+ F + AY+ L D+E++ N++ Y +PD
Sbjct: 33 LAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDHPD 89
>pdb|3EVT|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Lactobacillus Plantarum
Length = 324
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 583 TELVDQEQVQ-LKFTAPRWPGVYTFSVCLRCDSYLGFDQMQDIKLDVKEAPEVPTEHPQW 641
TEL Q + Q + R P V T ++ D + Q+ LDV E +PT+HP W
Sbjct: 211 TELFQQTKQQPMLINIGRGPAVDTTALMTALDHH----QLSMAALDVTEPEPLPTDHPLW 266
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,484,419
Number of Sequences: 62578
Number of extensions: 842705
Number of successful extensions: 1695
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1638
Number of HSP's gapped (non-prelim): 49
length of query: 904
length of database: 14,973,337
effective HSP length: 108
effective length of query: 796
effective length of database: 8,214,913
effective search space: 6539070748
effective search space used: 6539070748
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)