Query psy12224
Match_columns 904
No_of_seqs 347 out of 2113
Neff 5.3
Searched_HMMs 46136
Date Fri Aug 16 21:59:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12224.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12224hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4434|consensus 100.0 1E-114 3E-119 923.0 34.6 515 131-671 1-520 (520)
2 COG5407 SEC63 Preprotein trans 100.0 4.9E-58 1.1E-62 500.6 22.8 436 7-631 103-550 (610)
3 smart00611 SEC63 Domain of unk 100.0 3E-49 6.5E-54 430.5 33.1 307 110-627 2-312 (312)
4 PF02889 Sec63: Sec63 Brl doma 100.0 7.7E-49 1.7E-53 426.9 29.7 298 123-626 13-314 (314)
5 KOG0721|consensus 100.0 3.5E-33 7.6E-38 284.8 4.5 124 7-130 104-230 (230)
6 KOG0951|consensus 99.9 7.4E-23 1.6E-27 245.1 16.3 200 123-351 818-1017(1674)
7 COG0484 DnaJ DnaJ-class molecu 99.8 6.7E-19 1.5E-23 195.3 8.4 70 1-70 1-75 (371)
8 KOG0713|consensus 99.7 5.4E-18 1.2E-22 184.1 6.9 66 3-68 15-85 (336)
9 KOG0952|consensus 99.7 1.2E-16 2.7E-21 190.8 10.1 189 121-350 608-796 (1230)
10 KOG0712|consensus 99.6 2.8E-16 6.2E-21 172.5 7.3 64 5-68 7-70 (337)
11 PRK14288 chaperone protein Dna 99.6 1.4E-15 2.9E-20 171.4 7.6 61 7-67 8-71 (369)
12 PRK00254 ski2-like helicase; P 99.6 5.6E-15 1.2E-19 179.2 12.7 194 123-338 492-699 (720)
13 PRK14296 chaperone protein Dna 99.6 2.3E-15 4.9E-20 169.7 7.6 67 1-67 1-71 (372)
14 PRK02362 ski2-like helicase; P 99.6 1.4E-14 3E-19 176.2 13.7 187 123-338 501-704 (737)
15 PTZ00037 DnaJ_C chaperone prot 99.5 8.2E-15 1.8E-19 167.3 6.9 60 7-67 33-92 (421)
16 PRK14279 chaperone protein Dna 99.5 1.2E-14 2.7E-19 164.8 6.7 60 7-66 14-76 (392)
17 PRK14286 chaperone protein Dna 99.5 1.5E-14 3.4E-19 163.0 7.4 67 1-67 1-72 (372)
18 PRK14287 chaperone protein Dna 99.5 1.7E-14 3.6E-19 162.7 7.5 67 1-67 1-71 (371)
19 PRK14282 chaperone protein Dna 99.5 2.1E-14 4.6E-19 161.8 7.6 67 1-67 1-73 (369)
20 PRK01172 ski2-like helicase; P 99.5 9.8E-14 2.1E-18 167.2 13.2 182 123-340 479-668 (674)
21 PRK14294 chaperone protein Dna 99.5 3.3E-14 7.1E-19 160.1 7.9 68 1-68 1-73 (366)
22 PRK14299 chaperone protein Dna 99.5 3.7E-14 8E-19 155.1 7.6 67 1-67 1-71 (291)
23 PRK14276 chaperone protein Dna 99.5 4.5E-14 9.7E-19 159.7 7.6 67 1-67 1-71 (380)
24 PRK14298 chaperone protein Dna 99.5 4.5E-14 9.7E-19 159.6 7.1 67 1-67 1-72 (377)
25 PRK14285 chaperone protein Dna 99.5 4.8E-14 1E-18 158.7 7.0 61 7-67 8-71 (365)
26 PRK14278 chaperone protein Dna 99.5 5.8E-14 1.3E-18 158.7 7.5 61 7-67 8-70 (378)
27 PRK14283 chaperone protein Dna 99.5 6E-14 1.3E-18 158.6 7.3 61 7-67 10-72 (378)
28 PRK14280 chaperone protein Dna 99.5 7.7E-14 1.7E-18 157.6 7.7 67 1-67 1-71 (376)
29 PRK14301 chaperone protein Dna 99.5 7E-14 1.5E-18 157.8 7.2 67 1-67 1-72 (373)
30 PRK14297 chaperone protein Dna 99.5 7.2E-14 1.6E-18 158.1 7.0 67 1-67 1-72 (380)
31 PRK14277 chaperone protein Dna 99.4 1.2E-13 2.5E-18 156.6 7.7 61 7-67 10-73 (386)
32 PRK10767 chaperone protein Dna 99.4 1.5E-13 3.4E-18 154.9 7.8 68 1-68 1-73 (371)
33 PRK14291 chaperone protein Dna 99.4 1.5E-13 3.2E-18 155.7 7.5 61 7-67 8-70 (382)
34 KOG0716|consensus 99.4 1.9E-13 4.2E-18 144.9 6.3 60 7-66 36-98 (279)
35 PF00226 DnaJ: DnaJ domain; I 99.4 3.4E-13 7.3E-18 114.7 6.1 56 7-62 5-64 (64)
36 PRK14281 chaperone protein Dna 99.4 2.5E-13 5.4E-18 154.5 7.0 61 7-67 8-71 (397)
37 PRK14295 chaperone protein Dna 99.4 2.7E-13 6E-18 153.8 7.0 61 7-67 14-81 (389)
38 KOG0691|consensus 99.4 2.8E-13 6.1E-18 147.5 6.6 61 7-67 10-73 (296)
39 PRK14284 chaperone protein Dna 99.4 3.4E-13 7.4E-18 153.1 7.4 61 7-67 6-69 (391)
40 PTZ00341 Ring-infected erythro 99.4 4.5E-13 9.7E-18 160.9 8.0 62 7-68 578-641 (1136)
41 PRK14290 chaperone protein Dna 99.4 3.9E-13 8.3E-18 151.4 7.0 61 7-67 8-72 (365)
42 KOG0717|consensus 99.4 3.2E-13 6.9E-18 151.2 5.3 60 7-66 13-76 (508)
43 PRK10266 curved DNA-binding pr 99.4 5.6E-13 1.2E-17 146.8 7.2 66 1-66 1-70 (306)
44 PRK14300 chaperone protein Dna 99.4 5.4E-13 1.2E-17 150.6 7.0 61 7-67 8-70 (372)
45 KOG0715|consensus 99.4 8.1E-13 1.8E-17 144.3 7.1 61 7-67 48-110 (288)
46 PRK14289 chaperone protein Dna 99.4 8.4E-13 1.8E-17 149.7 7.4 61 7-67 10-73 (386)
47 PRK14293 chaperone protein Dna 99.3 1.2E-12 2.6E-17 147.9 7.4 61 7-67 8-70 (374)
48 PRK14292 chaperone protein Dna 99.3 9.7E-13 2.1E-17 148.5 6.5 65 4-68 4-70 (371)
49 TIGR02349 DnaJ_bact chaperone 99.3 1.4E-12 3.1E-17 146.2 6.9 62 7-68 5-68 (354)
50 KOG0719|consensus 99.3 1.2E-12 2.6E-17 136.0 5.6 62 7-68 19-85 (264)
51 PHA03102 Small T antigen; Revi 99.3 1.9E-12 4E-17 129.1 6.4 63 7-70 10-74 (153)
52 KOG0718|consensus 99.3 2.1E-12 4.5E-17 144.7 6.1 64 7-70 14-83 (546)
53 cd06257 DnaJ DnaJ domain or J- 99.2 4.7E-11 1E-15 98.0 6.1 48 7-54 5-55 (55)
54 smart00271 DnaJ DnaJ molecular 99.2 4E-11 8.8E-16 100.3 5.6 50 7-56 6-59 (60)
55 COG2214 CbpA DnaJ-class molecu 99.2 4.3E-11 9.4E-16 121.3 6.7 59 7-65 11-73 (237)
56 TIGR03835 termin_org_DnaJ term 99.2 5.5E-11 1.2E-15 140.7 8.4 62 7-68 7-70 (871)
57 PRK01356 hscB co-chaperone Hsc 98.9 2.7E-09 5.9E-14 108.2 8.3 65 1-65 1-73 (166)
58 KOG0722|consensus 98.9 1.1E-09 2.4E-14 115.2 3.6 59 7-65 38-98 (329)
59 KOG0624|consensus 98.9 2.6E-09 5.7E-14 116.9 6.0 64 7-70 399-468 (504)
60 PRK00294 hscB co-chaperone Hsc 98.8 4.6E-09 1E-13 107.2 7.2 63 1-63 1-75 (173)
61 PRK05014 hscB co-chaperone Hsc 98.8 6.9E-09 1.5E-13 105.8 7.8 57 7-63 6-72 (171)
62 PTZ00100 DnaJ chaperone protei 98.8 4.6E-09 9.9E-14 100.4 5.6 46 7-53 70-115 (116)
63 KOG0714|consensus 98.8 4.4E-09 9.6E-14 111.9 4.7 63 7-70 8-74 (306)
64 PRK03578 hscB co-chaperone Hsc 98.8 2.1E-08 4.6E-13 102.7 8.8 57 7-63 11-77 (176)
65 PHA02624 large T antigen; Prov 98.7 8.7E-09 1.9E-13 121.2 6.2 55 7-62 16-72 (647)
66 KOG0550|consensus 98.6 4.4E-08 9.6E-13 109.7 6.1 57 7-63 378-438 (486)
67 KOG0720|consensus 98.6 4.3E-08 9.4E-13 110.8 5.5 58 7-64 240-299 (490)
68 TIGR00714 hscB Fe-S protein as 98.5 3.1E-07 6.8E-12 92.6 8.0 53 14-66 3-63 (157)
69 KOG1150|consensus 98.2 1.9E-06 4.1E-11 88.6 6.0 61 3-63 47-118 (250)
70 PRK01773 hscB co-chaperone Hsc 98.0 7.5E-06 1.6E-10 83.9 6.2 60 4-63 4-73 (173)
71 KOG1789|consensus 98.0 6.1E-06 1.3E-10 99.8 4.8 51 7-57 1286-1340(2235)
72 KOG0951|consensus 97.8 1.2E-05 2.7E-10 99.6 4.6 46 583-629 1629-1674(1674)
73 COG5269 ZUO1 Ribosome-associat 97.8 2.4E-05 5.3E-10 83.7 4.8 58 7-64 48-113 (379)
74 PRK09430 djlA Dna-J like membr 97.5 8.8E-05 1.9E-09 81.0 4.4 29 7-35 205-233 (267)
75 KOG0723|consensus 97.2 0.00044 9.6E-09 65.1 5.1 48 7-55 61-108 (112)
76 KOG0568|consensus 97.0 0.00082 1.8E-08 70.8 5.1 48 7-54 52-102 (342)
77 KOG3192|consensus 91.4 0.28 6.1E-06 49.6 4.8 54 10-63 18-79 (168)
78 PF10446 DUF2457: Protein of u 87.2 0.66 1.4E-05 53.8 4.4 10 679-688 120-129 (458)
79 KOG0431|consensus 85.5 0.89 1.9E-05 53.7 4.5 36 14-49 400-441 (453)
80 PF03656 Pam16: Pam16; InterP 84.6 1.4 3E-05 43.5 4.7 50 7-57 63-112 (127)
81 COG1076 DjlA DnaJ-domain-conta 82.8 1.1 2.3E-05 46.3 3.2 48 16-63 17-72 (174)
82 COG1204 Superfamily II helicas 82.8 1.1 2.4E-05 56.2 3.9 151 122-297 512-665 (766)
83 PF14520 HHH_5: Helix-hairpin- 80.4 1.9 4.1E-05 36.6 3.4 54 282-338 6-59 (60)
84 COG1076 DjlA DnaJ-domain-conta 69.3 2.9 6.2E-05 43.1 2.0 29 7-35 118-146 (174)
85 KOG0724|consensus 68.2 4.4 9.6E-05 45.6 3.4 52 13-64 3-61 (335)
86 PF13543 KSR1-SAM: SAM like do 66.1 61 0.0013 32.4 10.3 57 280-339 60-127 (129)
87 KOG1832|consensus 64.6 3.9 8.5E-05 51.1 2.1 19 552-570 1236-1254(1516)
88 KOG1189|consensus 64.2 3.4 7.4E-05 50.9 1.5 6 337-342 473-478 (960)
89 KOG1832|consensus 63.4 3.8 8.1E-05 51.3 1.7 7 612-618 1370-1376(1516)
90 KOG0943|consensus 59.1 6 0.00013 50.8 2.4 15 826-840 2034-2048(3015)
91 PF07495 Y_Y_Y: Y_Y_Y domain; 58.4 27 0.0006 29.4 5.7 36 592-629 30-66 (66)
92 PRK07758 hypothetical protein; 58.1 23 0.0005 33.5 5.4 51 286-339 39-89 (95)
93 PRK04301 radA DNA repair and r 58.0 17 0.00038 40.6 5.7 57 280-339 5-61 (317)
94 PF03115 Astro_capsid: Astrovi 57.5 3.4 7.5E-05 51.7 0.0 9 361-369 427-435 (787)
95 PF03118 RNA_pol_A_CTD: Bacter 55.1 23 0.0005 31.1 4.7 55 280-338 11-65 (66)
96 KOG4434|consensus 53.3 6.6 0.00014 44.9 1.3 12 228-239 137-148 (520)
97 PF11833 DUF3353: Protein of u 52.1 22 0.00048 37.6 4.9 44 11-59 1-44 (194)
98 TIGR02236 recomb_radA DNA repa 51.0 28 0.0006 38.7 5.8 53 283-338 1-53 (310)
99 KOG0943|consensus 50.9 8.8 0.00019 49.4 1.9 12 146-157 1265-1276(3015)
100 PF11081 DUF2890: Protein of u 50.0 5.8 0.00013 41.6 0.3 15 627-642 11-25 (187)
101 PF04147 Nop14: Nop14-like fam 49.6 11 0.00024 48.1 2.6 20 810-829 673-695 (840)
102 KOG1834|consensus 48.9 15 0.00032 44.9 3.3 8 608-615 832-839 (952)
103 PRK12766 50S ribosomal protein 48.7 40 0.00086 36.7 6.2 55 281-338 3-57 (232)
104 PF05764 YL1: YL1 nuclear prot 48.5 14 0.0003 40.2 2.9 10 659-668 57-66 (240)
105 PTZ00035 Rad51 protein; Provis 47.1 33 0.00072 39.1 5.7 56 284-342 26-81 (337)
106 KOG3540|consensus 46.2 21 0.00046 42.2 3.9 9 271-279 48-56 (615)
107 KOG3555|consensus 44.9 13 0.00027 42.5 1.9 24 659-683 410-433 (434)
108 KOG3241|consensus 43.1 16 0.00035 38.1 2.1 17 638-654 191-207 (227)
109 PF05285 SDA1: SDA1; InterPro 41.3 16 0.00035 41.4 2.1 10 612-621 65-74 (324)
110 PF02724 CDC45: CDC45-like pro 39.2 22 0.00047 44.0 2.9 14 852-865 338-351 (622)
111 PF06991 Prp19_bind: Splicing 38.2 21 0.00046 39.8 2.3 15 682-696 35-49 (276)
112 PF04147 Nop14: Nop14-like fam 37.4 23 0.0005 45.2 2.8 11 679-689 416-426 (840)
113 PF04889 Cwf_Cwc_15: Cwf15/Cwc 35.9 15 0.00033 40.2 0.7 7 424-430 5-11 (244)
114 KOG0772|consensus 35.6 28 0.0006 41.7 2.8 15 805-820 323-337 (641)
115 TIGR02238 recomb_DMC1 meiotic 35.0 67 0.0014 36.4 5.7 54 285-341 5-58 (313)
116 TIGR02239 recomb_RAD51 DNA rep 34.8 70 0.0015 36.2 5.8 54 284-340 4-57 (316)
117 TIGR01954 nusA_Cterm_rpt trans 32.7 90 0.002 24.9 4.6 47 289-338 1-47 (50)
118 PLN03187 meiotic recombination 30.2 75 0.0016 36.6 5.1 57 282-341 32-88 (344)
119 PF11731 Cdd1: Pathogenicity l 30.1 55 0.0012 30.9 3.3 38 281-320 12-49 (93)
120 KOG3130|consensus 29.6 31 0.00067 40.1 1.9 17 766-782 444-460 (514)
121 KOG3241|consensus 29.5 37 0.0008 35.5 2.2 8 670-677 215-222 (227)
122 PTZ00415 transmission-blocking 29.2 40 0.00086 45.6 2.9 16 710-725 259-274 (2849)
123 TIGR00596 rad1 DNA repair prot 29.2 77 0.0017 40.5 5.4 53 282-339 758-810 (814)
124 COG5406 Nucleosome binding fac 28.4 32 0.00069 42.1 1.7 17 574-590 824-840 (1001)
125 KOG3064|consensus 27.9 24 0.00052 38.8 0.6 10 265-274 112-121 (303)
126 PHA00458 single-stranded DNA-b 26.8 1.6E+02 0.0035 32.0 6.4 51 560-614 121-175 (233)
127 TIGR03786 strep_pil_rpt strept 26.4 1.1E+02 0.0024 26.8 4.4 37 592-631 3-42 (64)
128 KOG0699|consensus 26.3 51 0.0011 38.1 2.8 20 817-836 466-485 (542)
129 PF03153 TFIIA: Transcription 26.0 28 0.0006 40.0 0.7 11 673-683 326-336 (375)
130 PTZ00415 transmission-blocking 26.0 37 0.00081 45.8 1.9 11 842-852 436-446 (2849)
131 PF11705 RNA_pol_3_Rpc31: DNA- 25.9 29 0.00063 37.5 0.8 18 550-570 115-132 (233)
132 PF04281 Tom22: Mitochondrial 25.7 16 0.00034 36.8 -1.1 44 674-717 49-93 (137)
133 PF00386 C1q: C1q domain; Int 24.7 1.1E+02 0.0025 29.2 4.6 17 594-611 38-54 (127)
134 KOG1189|consensus 24.5 47 0.001 41.5 2.3 17 518-534 925-941 (960)
135 PF14025 DUF4241: Protein of u 24.0 1.6E+02 0.0036 30.9 5.9 42 595-636 25-66 (185)
136 PLN03186 DNA repair protein RA 24.0 1.2E+02 0.0025 35.0 5.2 56 282-340 27-84 (342)
137 PRK01216 DNA polymerase IV; Va 23.4 1.1E+02 0.0024 35.2 4.8 62 270-338 169-230 (351)
138 PRK14133 DNA polymerase IV; Pr 23.2 1.1E+02 0.0023 34.8 4.7 61 271-339 165-225 (347)
139 COG5406 Nucleosome binding fac 23.2 53 0.0012 40.3 2.3 16 517-532 974-989 (1001)
140 smart00736 CADG Dystroglycan-t 22.8 3.5E+02 0.0075 24.9 7.2 49 564-632 47-95 (97)
141 PRK02406 DNA polymerase IV; Va 22.2 1.1E+02 0.0024 34.6 4.6 64 271-342 160-223 (343)
142 PF13446 RPT: A repeated domai 22.2 1.3E+02 0.0027 25.7 3.9 39 7-53 10-48 (62)
143 PF07739 TipAS: TipAS antibiot 22.0 1.9E+02 0.004 27.1 5.4 51 9-65 51-103 (118)
144 KOG1999|consensus 21.1 60 0.0013 41.6 2.3 7 711-717 172-178 (1024)
145 KOG1991|consensus 20.9 56 0.0012 42.0 2.0 14 264-277 582-595 (1010)
146 cd03586 PolY_Pol_IV_kappa DNA 20.8 2.2E+02 0.0048 31.7 6.6 67 271-345 163-229 (334)
147 PRK03348 DNA polymerase IV; Pr 20.4 2E+02 0.0044 34.2 6.4 58 280-342 179-236 (454)
148 KOG2141|consensus 20.0 60 0.0013 40.5 1.9 7 812-818 329-335 (822)
No 1
>KOG4434|consensus
Probab=100.00 E-value=1.5e-114 Score=923.00 Aligned_cols=515 Identities=45% Similarity=0.773 Sum_probs=430.5
Q ss_pred hhhhcccCccccHHHHHHHHhcccccccccccccccCCchhhhHHHHHHhcCCCcccCCCCCCccchhhhHHHHHHHHhc
Q psy12224 131 YYAFFQITPHMALKRVLMILGASLEFDRRFNSEIIERPSDEIEVPQLIRQIPNLGEKNRERPLYHKYSIKARALIYAHLS 210 (904)
Q Consensus 131 Fyy~~~ltp~mt~~~LL~ILS~A~EF~~~~n~eI~vR~~E~~eL~kL~k~lp~l~~k~Ke~~~~~~~~~KA~iLLqAHLs 210 (904)
||||++.||+|.++++|++||+|.||+++||+++..|+.++.++++|+++++.++++++++|++.+|+.|+++||+|||+
T Consensus 1 Y~YFi~kTp~M~~kR~imVLags~EFdkqyNk~iqeR~tDn~evP~Lirqi~~vN~K~kE~PL~~pYslKaRvlLhahLs 80 (520)
T KOG4434|consen 1 YYYFINRTPRMEIKRMIMVLAGSFEFDKQYNKEIQERETDNYEVPRLIRQIAGVNDKGKEQPLSQPYSLKARVLLHAHLS 80 (520)
T ss_pred CeeeeccCchhHHHHHHHHHhcccccChhhchhhhccCCcchHHHHHHHHcccccccccCCCccCchhHHHHHHHHHHHh
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHhhccCcccchHHHHHHHHHHHHHHHhccCCCCCCcccCCCCC
Q psy12224 211 NMQLTSETLEADRMYIVKKCPYLLQEMVTCISQLILLAYAQRVPRLIHIETLENVMKLCPMIVQGMWDFKNPLLQLPYVT 290 (904)
Q Consensus 211 Ri~Lp~~dL~~D~~~IL~~apRLLqAMvdIa~~lg~la~~rr~~~~p~L~taln~m~L~QmIvQalW~~~SPLLQLPhvt 290 (904)
|++|++.+|..|+.||+.+||||+++||+|++++..|+++|+-.|+|++.++.|||+|++|+|||+|.+.|||||||||+
T Consensus 81 Rmpl~~dtLEeDqqfiikkcp~lvqEMVnc~~qLi~May~r~~~r~psiet~eNcmKlspM~vQgLwqfkSPLLQLPHit 160 (520)
T KOG4434|consen 81 RMPLESDTLEEDQQFIIKKCPRLVQEMVNCSQQLIVMAYSRHTRRIPSIETFENCMKLSPMFVQGLWQFKSPLLQLPHIT 160 (520)
T ss_pred cCCCChhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccccCccHHHHHHHHhccHHHHHHHHHhcChhhcCCccc
Confidence 99999989999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcccCCCCHHHHHcCCHHHHHHHHhhCCHHHHHHHHHHHccCCceeEEEeEEEccCCCCcccccCceEEEEE
Q psy12224 291 DDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMPYVDLHVQPEVIDDEATTEYTAGAIITVTC 370 (904)
Q Consensus 291 ee~lk~l~~kk~~V~sL~dL~~m~~eEr~~lL~~Lse~q~~dV~kvl~~~P~IeIea~~~V~deed~~~ItpGsiVTltV 370 (904)
+++++++. ++++|++++||+.|.+++|+.+|+.|++++|++||.|+++||+|.|+++++|+||+|+++||+|++|||+|
T Consensus 161 ednL~~~~-KKr~vks~qdla~lk~e~rr~lL~~LsdeeYe~vM~VLg~mP~~~~~ik~~V~dded~n~~TaG~vVTv~V 239 (520)
T KOG4434|consen 161 EDNLQHLR-KKRKVKSCQDLAVLKAETRRSLLRSLSDEEYEDVMVVLGMMPRLQIEIKTVVEDDEDKNELTAGCVVTVKV 239 (520)
T ss_pred hHHHHHHh-hhcccccHHHHhhcCHHHHHHHHHhcchHHHHHHHHHHccCcceEEEeeEEEecCCcccceeeeeEEEEEE
Confidence 99999995 77889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCccc----CCc-cccccccCCCCCCCCchhhhccCCCCCcccccccccccccccchhccccCCCccccccccc
Q psy12224 371 TLMRKPMSVLF----GDD-TIKVQFLEPSKEGEGEIEEEEEKPNGTITPVVNKEKQQTHRPVWMKNKKGGKKKKFTKNKH 445 (904)
Q Consensus 371 ~L~R~~l~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~W~k~kk~~k~~~~~~~~~ 445 (904)
+|+|+.|.++. ++. ..+..++..+.++..+.+.++++ ...-.+++++|+++|.|.|-+++++.- .++
T Consensus 240 tl~R~~l~d~~e~~~~d~~k~paedG~~de~n~ea~g~~~ea------aa~~~~~~vKK~kpw~K~Kpk~~kkpa--q~Q 311 (520)
T KOG4434|consen 240 TLRRSRLIDPQEAGLADQYKKPAEDGGDDENNLEASGAPEEA------AATVEEEEVKKRKPWEKNKPKQKKKPA--QGQ 311 (520)
T ss_pred EEEeccccChHhhhhhhhhhCchhhCCCcccchhccCChhhh------ccccchhhhhhcCchhhcCCCcccCcc--ccc
Confidence 99999887642 221 11111111111100000001110 011223467789999773222211111 111
Q ss_pred CCccccccccccccccccCCchhhhccccCCcccccccCCccccccccccccchhhhhccccccccCCCCCCCCCCChhh
Q psy12224 446 DKKSSGQKKITNTVEQTEAPADVAKVEKKDTPEESKDVSSESEEESDLSDVENDEVVDKKEKNEDSNNKSEESSDDDDDD 525 (904)
Q Consensus 446 ~~k~~~~k~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~dd~e 525 (904)
.++ +..++.+++.... ++. +++.+++++++++++.+.|+++.. ++.||.+++++.++..++|||.|
T Consensus 312 ~~q---------K~v~~~aas~at~--ka~-eeea~~~~sD~E~e~~n~Ds~dee--s~asd~~~D~e~~~~~ddddd~E 377 (520)
T KOG4434|consen 312 GQQ---------KFVKKNAASPATE--KAL-EEEAKDKGSDSEEEETNRDSQDEE--SDASDRDSDREQDEKQDDDDDAE 377 (520)
T ss_pred hhh---------hhcccccCChhhh--hhh-HHHhhhcCcchhhhhhcccccccc--cccCccccchhhccccccccHHH
Confidence 111 1111111111111 112 445667778887777777666654 34455555666688888999999
Q ss_pred HHHHhhcccccccccccCCCCCcceeCCCCCCCCCcceEEEEEeCCCCeEEeccceeeeecceeEEEEEEEcCCCCceeE
Q psy12224 526 WEKYQTGLNKRDKVLEGRSKQSHSVHCPRFPEDKQEFWWIYISDRKSRTLLTSPYHITELVDQEQVQLKFTAPRWPGVYT 605 (904)
Q Consensus 526 we~lq~~~~kre~~le~ks~~sh~VhaPyFP~eK~E~WWv~V~D~K~~~Ll~~p~~vt~L~~~~ev~LkF~AP~~pG~y~ 605 (904)
||.||.++++|. ++|++++++|+|||||||.+|+||||+||+|+|+++||++|+||++|++.++|+|+|+||+|||.|+
T Consensus 378 We~lqa~~~kr~-~lEtKs~~tHtVh~pyFPeEKqEwWW~Yi~drKsrtLlt~PyhV~tL~d~eei~lkF~AP~~pG~Yt 456 (520)
T KOG4434|consen 378 WEELQASIQKRA-LLETKSKITHTVHSPYFPEEKQEWWWLYIADRKSRTLLTMPYHVCTLKDTEEIELKFPAPGKPGNYT 456 (520)
T ss_pred HHHHHHHHHHHH-hhhcccccceeeccCCCcchhhheeeeeeecccccceecchhhhhcccccceeEEeccCCCCCCceE
Confidence 999999999877 4999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEcCCCccccceEEEEEEeecCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCccCcccccc
Q psy12224 606 FSVCLRCDSYLGFDQMQDIKLDVKEAPEVPTEHPQWEMSGEEDEGDEEMGGSDVSEFTTDEDVEDD 671 (904)
Q Consensus 606 ytv~v~SDSYlG~Dq~~dikl~V~ea~~v~~~~~e~dise~eed~~ee~~~~~es~~ttD~e~e~d 671 (904)
|+|||+||||||+||++++||+|++|++||+.||+||.++++.++-++++. =+|||||+++|++
T Consensus 457 ytv~lrSDSYmg~dq~~~lKldV~eAk~vp~~Hpqwd~~~~e~e~~~~~e~--~~Dyted~~~eEe 520 (520)
T KOG4434|consen 457 YTVFLRSDSYMGLDQIKPLKLDVHEAKPVPENHPQWDTAIEEDEDQEDSEG--FEDYTEDEEEEEE 520 (520)
T ss_pred EEEEEecccccChhhccceeeeeccCCCCCCCCcccccccccccccccccc--ccccccccccccC
Confidence 999999999999999999999999999999999999988877766655555 5899999888875
No 2
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=100.00 E-value=4.9e-58 Score=500.61 Aligned_cols=436 Identities=22% Similarity=0.268 Sum_probs=346.8
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhcCCCCCCc--------hHHHHHHHHHHHHHcCChHHHHHhhhcCCCCCCCCCccccc
Q psy12224 7 TPLKPSGASEASIKKAYRKQSLILHPDKETG--------DEKAFMKLTKAYQALTDEESRRNFEKYGNPDGPGAMSFGIA 78 (904)
Q Consensus 7 ILGV~~~As~~eIKkAYRkLSlkyHPDKnp~--------~ee~F~kI~kAYevLtDp~~R~~YD~yG~pdg~~~~~~gia 78 (904)
||||+.+++..+||++||+||.||||||.+. .+++|++|++||+.|||+..|+||-.||+||+||+.+.|+|
T Consensus 103 ILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd~pQhts~gIA 182 (610)
T COG5407 103 ILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPDSPQHTSEGIA 182 (610)
T ss_pred hhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCCCCccccceee
Confidence 9999999999999999999999999999754 25799999999999999999999999999999999999999
Q ss_pred cchhhhhccccceeeeeehheecccccccceeeeeecccccCCccccchhhhhhhhcccCccccHHHHHHHHhccccccc
Q psy12224 79 LPSYIVEKENSVWVLGLYALVFMVALPTAVGMWWYKSIRYTGDKVLLETINFYYAFFQITPHMALKRVLMILGASLEFDR 158 (904)
Q Consensus 79 LP~~lv~~~n~~~vl~~y~llf~vilp~~vg~ww~~s~kyt~~~Vl~dTi~~Fyy~~~ltp~mt~~~LL~ILS~A~EF~~ 158 (904)
||+|+++++++++.+++|+++||++||++|++||++++.|+++|||+.|+++|| ..+...+|+..||.++|.|.||..
T Consensus 183 lPk~iv~se~s~y~~v~Y~lllGv~LPy~v~rwW~~~r~ytk~gvh~vT~~~f~--~~~~~SlTlDelLslfasskElt~ 260 (610)
T COG5407 183 LPKVIVRSERSMYAFVMYSLLLGVFLPYWVYRWWREIRDYTKVGVHFVTMEMFY--ERIDGSLTLDELLSLFASSKELTR 260 (610)
T ss_pred cchheecCCCCceeHHHHHHHHHHHHHHHHHHHHHhhhhhcccceeeeeHHHHH--HhhcccchHHHHHHHHhhhHHHHH
Confidence 999999999999999999999999999999999999999999999999999995 445557999999999999999982
Q ss_pred ccccccccCCchhhhHHHHHHhcCCCcccCCCCCCccchhhhHHHHHHHHhcCCCCChhhHHHHHHHHHHhhhHHHHHHH
Q psy12224 159 RFNSEIIERPSDEIEVPQLIRQIPNLGEKNRERPLYHKYSIKARALIYAHLSNMQLTSETLEADRMYIVKKCPYLLQEMV 238 (904)
Q Consensus 159 ~~n~eI~vR~~E~~eL~kL~k~lp~l~~k~Ke~~~~~~~~~KA~iLLqAHLsRi~Lp~~dL~~D~~~IL~~apRLLqAMv 238 (904)
.+ | ++ +..-..-||+.||.|..-.. +. ...|+.+|.-|++|++
T Consensus 261 ~~---------------------p----k~--------pk~~~ekll~dhlnr~~s~~--fn--~~ri~s~~~~ll~aLL 303 (610)
T COG5407 261 MN---------------------P----KG--------PKCTLEKLLGDHLNRARSVE--FN--EYRIKSNVEGLLGALL 303 (610)
T ss_pred hC---------------------C----CC--------CchhHHHHHHHHHhHhhccc--ch--heehhhhhHHHHHHHH
Confidence 11 1 00 01224459999999987543 44 6779999999999999
Q ss_pred HHHHHhHHHHhhccCcccchHHHHHHHHHHHHHHHhccC-CCCCCcccCCCCCHHHHHHhhhcccCCCCHHHHHcCCHHH
Q psy12224 239 TCISQLILLAYAQRVPRLIHIETLENVMKLCPMIVQGMW-DFKNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEE 317 (904)
Q Consensus 239 dIa~~lg~la~~rr~~~~p~L~taln~m~L~QmIvQalW-~~~SPLLQLPhvtee~lk~l~~kk~~V~sL~dL~~m~~eE 317 (904)
+||+.++. +..+.+.+.+.||||||++ ....+++||||+..+.++.+ .-+.|.++.+|..+.+..
T Consensus 304 ~ia~~F~f------------~~~~~g~~n~~q~iVqAiPld~~f~ilQlp~~d~E~~~~~--s~r~I~~~~~~~sL~~~~ 369 (610)
T COG5407 304 RIASNFAF------------PLKECGKENKGQYIVQAIPLDHLFRILQLPRSDVEYAQRV--SLRLIEGMKAIGSLIAKR 369 (610)
T ss_pred HHHhhccC------------CchhhccchhhheeeEeccCCCCchhhcccchhHHHHHHh--hhhhhhhhhhHhhHHHHH
Confidence 99988754 4467889999999999998 45789999999999988777 446789999999999999
Q ss_pred HHHHHhhCCHHHHHHHHHHHccCCceeE-EEeEEEccCCCCcccccCceEEEEEEEEEccCCcccCCccccccccCCCCC
Q psy12224 318 RRSVVKFMNDEQYSDMLKVLGNMPYVDL-HVQPEVIDDEATTEYTAGAIITVTCTLMRKPMSVLFGDDTIKVQFLEPSKE 396 (904)
Q Consensus 318 r~~lL~~Lse~q~~dV~kvl~~~P~IeI-ea~~~V~deed~~~ItpGsiVTltV~L~R~~l~~~~~~~~~~~~~~~~~~~ 396 (904)
.+.+|++++..++.++..+++++|++.| .+.|-|.|| +.||+|++-.|.++.--....
T Consensus 370 ~g~vl~n~~~~~l~e~~~va~gIPr~~~~~a~flv~~d---~~it~~s~~~vslk~~~g~~~------------------ 428 (610)
T COG5407 370 YGNVLKNLVVLELMEIQAVADGIPRYFLLQAPFLVFED---LFITEKSKERVSLKGYLGAIP------------------ 428 (610)
T ss_pred HhhhhhhHHHHHHHHHHHHhcCCCceEEEecceeeccc---ceecccceeeEEEEEEecccc------------------
Confidence 9999999999999999999999999999 888988776 489999988666554221110
Q ss_pred CCCchhhhccCCCCCcccccccccccccccchhccccCCCcccccccccCCccccccccccccccccCCchhhhccccCC
Q psy12224 397 GEGEIEEEEEKPNGTITPVVNKEKQQTHRPVWMKNKKGGKKKKFTKNKHDKKSSGQKKITNTVEQTEAPADVAKVEKKDT 476 (904)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~W~k~kk~~k~~~~~~~~~~~k~~~~k~~~~~~~~~~~~~~~~~~~~~e~ 476 (904)
++ +- . ..+.+. +
T Consensus 429 -~p------e~----------------------------------------~------------ts~~~~--------~- 440 (610)
T COG5407 429 -GP------EH----------------------------------------R------------TSALNV--------Y- 440 (610)
T ss_pred -CC------cc----------------------------------------c------------cccccc--------c-
Confidence 00 00 0 000000 0
Q ss_pred cccccccCCccccccccccccchhhhhccccccccCCCCCCCCCCChhhHHHHhhccccccc-ccccCCCCCcceeCCCC
Q psy12224 477 PEESKDVSSESEEESDLSDVENDEVVDKKEKNEDSNNKSEESSDDDDDDWEKYQTGLNKRDK-VLEGRSKQSHSVHCPRF 555 (904)
Q Consensus 477 ~~~~~~~~~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~dd~ewe~lq~~~~kre~-~le~ks~~sh~VhaPyF 555 (904)
...| .+++|+.|+ ++ ..-+++..+...+||||
T Consensus 441 ------n~~e------------------------------------~~dfe~~~~-----~~~ai~~d~~~~pys~Ap~f 473 (610)
T COG5407 441 ------NQVE------------------------------------ISDFEASVI-----ETGAIKNDSSDSPYSEAPDF 473 (610)
T ss_pred ------cccC------------------------------------hHHHhhhcc-----CccccccCCCCCCcccCccc
Confidence 0000 011222111 11 12222323445899999
Q ss_pred CCCCCcceEEEEEeCCCCeEEeccceeeeec-ceeEEEEEEEcCCCCceeEEEEEEEcCCCccccceEEEEEEeecC
Q psy12224 556 PEDKQEFWWIYISDRKSRTLLTSPYHITELV-DQEQVQLKFTAPRWPGVYTFSVCLRCDSYLGFDQMQDIKLDVKEA 631 (904)
Q Consensus 556 P~eK~E~WWv~V~D~K~~~Ll~~p~~vt~L~-~~~ev~LkF~AP~~pG~y~ytv~v~SDSYlG~Dq~~dikl~V~ea 631 (904)
|....-.|||+++++++..++.++..++++. ....-.++|..|+-.|+..+.+.+++-+|+|.+...-|.+-+++.
T Consensus 474 ~t~~~~~w~~~v~~~~Qt~~Iip~~Si~~v~K~~~d~Ri~~dv~pvd~T~~~ql~~~ap~~vg~f~~~~ivm~t~d~ 550 (610)
T COG5407 474 ATRNDSEWAVRVAKCEQTVYIIPGGSIATVSKVTLDRRIQGDVAPVDKTGGKQLIVHAPFMVGAFSVKWIVMLTVDN 550 (610)
T ss_pred ccccCcceEEEeeccccceEEeCCccccccchhhhhcccccccCccccccceeeeecCchhhccceeeeEEEEeech
Confidence 9999999999999999999999998888876 335566777776666677777778888888877777666555543
No 3
>smart00611 SEC63 Domain of unknown function in Sec63p, Brr2p and other proteins.
Probab=100.00 E-value=3e-49 Score=430.48 Aligned_cols=307 Identities=33% Similarity=0.513 Sum_probs=263.3
Q ss_pred eeeeecccccCC-ccccchhhhhhhhcccCccccHHHHHHHHhcccccccccccccccCCchhhhHHHHHHhcCCCcccC
Q psy12224 110 MWWYKSIRYTGD-KVLLETINFYYAFFQITPHMALKRVLMILGASLEFDRRFNSEIIERPSDEIEVPQLIRQIPNLGEKN 188 (904)
Q Consensus 110 ~ww~~s~kyt~~-~Vl~dTi~~Fyy~~~ltp~mt~~~LL~ILS~A~EF~~~~n~eI~vR~~E~~eL~kL~k~lp~l~~k~ 188 (904)
.||....+.... .|.++|++.| +..+++.++..++|++||.|.||. ++++|++|..++.+|.+.++....
T Consensus 2 ~~~T~~Grias~yYI~~~T~~~f--~~~l~~~~~~~~lL~~ls~a~Ef~-----~i~vR~~E~~~l~~l~~~~~~~~~-- 72 (312)
T smart00611 2 IWPTDLGRIASYYYISYTTIRTF--NELLKPKMTTKDLLRILSMSSEFD-----QIPVRHEEDLLLEELAEKLPIRLE-- 72 (312)
T ss_pred cccchhHHHHhhhccChHHHHHH--HHhcCCCCCHHHHHHHHhCcHhhC-----CCCCCccHHHHHHHHHHhCCcCcC--
Confidence 355555554444 4999999999 667789999999999999999999 999999999999999998875432
Q ss_pred CCCCCccchhhhHHHHHHHHhcCCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHhhccCcccchHHHHHHHHHH
Q psy12224 189 RERPLYHKYSIKARALIYAHLSNMQLTSETLEADRMYIVKKCPYLLQEMVTCISQLILLAYAQRVPRLIHIETLENVMKL 268 (904)
Q Consensus 189 Ke~~~~~~~~~KA~iLLqAHLsRi~Lp~~dL~~D~~~IL~~apRLLqAMvdIa~~lg~la~~rr~~~~p~L~taln~m~L 268 (904)
.....+++.|+++||||||+|+.+++++|..|+.+|+++|+||++||++||+.+|| +.++.++|+|
T Consensus 73 --~~~~~~~~~K~~lLLqa~i~r~~l~~~~l~~D~~~vl~~a~rll~al~di~~~~~~------------~~~~~~~l~L 138 (312)
T smart00611 73 --NPSLDDPHVKANLLLQAHLSRLKLPSFALESDTVYVLQNAGRLLQAMVDIALERGW------------LSTALNALNL 138 (312)
T ss_pred --CCCCCCchHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcch------------HHHHHHHHHH
Confidence 12345788999999999999999998899999999999999999999999987655 6789999999
Q ss_pred HHHHHhccCCCCCCcccCCCCCHHHHHHhhhcccCCCCHHHHHcCCHHHHHHHHhhCCHHHHHHHHHHHccCCceeEEEe
Q psy12224 269 CPMIVQGMWDFKNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMPYVDLHVQ 348 (904)
Q Consensus 269 ~QmIvQalW~~~SPLLQLPhvtee~lk~l~~kk~~V~sL~dL~~m~~eEr~~lL~~Lse~q~~dV~kvl~~~P~IeIea~ 348 (904)
+|||+||+|++.+||+|||||+.+.++++ .+.++.++++|.+++.+++..+++ +++.++++|+++|++||.|+|+++
T Consensus 139 ~q~i~q~~w~~~~~L~Qlp~i~~~~~~~l--~~~~i~s~~~l~~~~~~~~~~ll~-~~~~~~~~i~~~~~~~P~l~v~~~ 215 (312)
T smart00611 139 SQMIIQALWPTDSPLLQLPHLPEEILKRL--EKKKVLSLEDLLELEDEERGELLG-LLDAEGERVYKVLSRLPKLNIEIS 215 (312)
T ss_pred HHHHHHhhCCCCCccccCCCCCHHHHHHH--HhCCCCCHHHHHhcCHHHHHHHHc-CCHHHHHHHHHHHHhCCcceeEEE
Confidence 99999999999999999999999999999 566889999999999999999986 788999999999999999999876
Q ss_pred EEEccCCCCcccccCceEEEEEEEEEccCCcccCCccccccccCCCCCCCCchhhhccCCCCCcccccccccccccccch
Q psy12224 349 PEVIDDEATTEYTAGAIITVTCTLMRKPMSVLFGDDTIKVQFLEPSKEGEGEIEEEEEKPNGTITPVVNKEKQQTHRPVW 428 (904)
Q Consensus 349 ~~V~deed~~~ItpGsiVTltV~L~R~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~W 428 (904)
+.+. +.++.+..++|++.++|...
T Consensus 216 ~~~~-----~~~~~~~~~~i~~~~~~~~~--------------------------------------------------- 239 (312)
T smart00611 216 LEPI-----TRTVLGVEVTLTVDLTWDDE--------------------------------------------------- 239 (312)
T ss_pred EcCC-----cccccCceEEEEEEEEEccc---------------------------------------------------
Confidence 5432 23556778888877776210
Q ss_pred hccccCCCcccccccccCCccccccccccccccccCCchhhhccccCCcccccccCCccccccccccccchhhhhccccc
Q psy12224 429 MKNKKGGKKKKFTKNKHDKKSSGQKKITNTVEQTEAPADVAKVEKKDTPEESKDVSSESEEESDLSDVENDEVVDKKEKN 508 (904)
Q Consensus 429 ~k~kk~~k~~~~~~~~~~~k~~~~k~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~e~~~~~~~~d~~~~~~~~~~~~~ 508 (904)
T Consensus 240 -------------------------------------------------------------------------------- 239 (312)
T smart00611 240 -------------------------------------------------------------------------------- 239 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCCCCCCChhhHHHHhhcccccccccccCCCCCcceeCCCCCCCCCcceEEEEEeCCCCeEEeccceeeeecce
Q psy12224 509 EDSNNKSEESSDDDDDDWEKYQTGLNKRDKVLEGRSKQSHSVHCPRFPEDKQEFWWIYISDRKSRTLLTSPYHITELVDQ 588 (904)
Q Consensus 509 ~~~~~~~~~~~~~dd~ewe~lq~~~~kre~~le~ks~~sh~VhaPyFP~eK~E~WWv~V~D~K~~~Ll~~p~~vt~L~~~ 588 (904)
+| .|.|+||++|+|.++++|++.+. ++ +...
T Consensus 240 -----------------------------------------~~------~k~e~~~l~v~d~~~~~il~~~~-~~-~~~~ 270 (312)
T smart00611 240 -----------------------------------------IH------GKQEGWWLVIGDSDGNELLHIER-FS-LNKK 270 (312)
T ss_pred -----------------------------------------cc------CCcccEEEEEEeCCCCEEEEEEE-EE-EEee
Confidence 11 57899999999999999999875 33 3222
Q ss_pred ---eEEEEEEEcCCCCceeEEEEEEEcCCCccccceEEEEEE
Q psy12224 589 ---EQVQLKFTAPRWPGVYTFSVCLRCDSYLGFDQMQDIKLD 627 (904)
Q Consensus 589 ---~ev~LkF~AP~~pG~y~ytv~v~SDSYlG~Dq~~dikl~ 627 (904)
+++.|+|++|..+|.|+|+|+++||||+|||++++|+|+
T Consensus 271 ~~~~~~~l~f~~P~~~~~~~~~v~v~SD~y~g~d~~~~i~~~ 312 (312)
T smart00611 271 NVSEEVKLDFTAPATEGNYQYTLRLVSDSYLGCDQEYPLSFD 312 (312)
T ss_pred cCCCcEEEEEEecCCCCcceEEEEEEecccCCcceEEEEeeC
Confidence 478999999998899999999999999999999999874
No 4
>PF02889 Sec63: Sec63 Brl domain; InterPro: IPR004179 This domain was named after the yeast Sec63 (or NPL1) (also known as the Brl domain) protein in which it was found. This protein is required for assembly of functional endoplasmic reticulum translocons [, ]. Other yeast proteins containing this domain include pre-mRNA splicing helicase BRR2, HFM1 protein and putative helicases. ; PDB: 3IM2_A 3IM1_A 3HIB_A 2Q0Z_X.
Probab=100.00 E-value=7.7e-49 Score=426.91 Aligned_cols=298 Identities=33% Similarity=0.535 Sum_probs=224.3
Q ss_pred cccchhhhhhhhcccCccccHHHHHHHHhcccccccccccccccCCchhhhHHHHHHhcCCCcccCCCCCCccchhhhHH
Q psy12224 123 VLLETINFYYAFFQITPHMALKRVLMILGASLEFDRRFNSEIIERPSDEIEVPQLIRQIPNLGEKNRERPLYHKYSIKAR 202 (904)
Q Consensus 123 Vl~dTi~~Fyy~~~ltp~mt~~~LL~ILS~A~EF~~~~n~eI~vR~~E~~eL~kL~k~lp~l~~k~Ke~~~~~~~~~KA~ 202 (904)
|.++|++.| +..++++++..+||++||.|.||+ ++++|++|+.+|.+|.+.+++... .....+++.||+
T Consensus 13 i~~~T~~~~--~~~l~~~~~~~~il~~l~~a~EF~-----~i~~R~~E~~~l~~l~~~~~~~~~----~~~~~~~~~K~~ 81 (314)
T PF02889_consen 13 ISFETMENF--FESLKEDMSEKDILELLSSAEEFS-----EIPVRHNEKKELNELNKKIPYPIK----KEKINDPHIKAF 81 (314)
T ss_dssp --HHHHHHH--HHH--TT--HHHHHHHHHTSGGGC-----CS---TTHHHHHHHHHCCSSS--S----TS-TTSHHHHHH
T ss_pred ccHHHHHHH--HHHCCCCCCHHHHHHHHcCcHhHh-----hCccchhhHHHHHHHHHhcccCcc----ccccccHHHHHH
Confidence 899999999 446788999999999999999999 999999999999999998764321 223456778999
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHhhccCcccchHHHHHHHHHHHHHHHhccCCCCCC
Q psy12224 203 ALIYAHLSNMQLTSETLEADRMYIVKKCPYLLQEMVTCISQLILLAYAQRVPRLIHIETLENVMKLCPMIVQGMWDFKNP 282 (904)
Q Consensus 203 iLLqAHLsRi~Lp~~dL~~D~~~IL~~apRLLqAMvdIa~~lg~la~~rr~~~~p~L~taln~m~L~QmIvQalW~~~SP 282 (904)
+||||||+|++++..+|..|+.+|+++++||++||++||+..+ | +.++.++|+|+|||+||+|+..+|
T Consensus 82 ~Llqa~l~r~~l~~~~l~~D~~~i~~~~~Rll~a~~ei~~~~~-------~-----~~~~~~~l~l~q~i~q~~w~~~~~ 149 (314)
T PF02889_consen 82 VLLQAHLSRIPLPDSSLRQDLKYILDNAPRLLRAMIEIALEKG-------W-----LSTALNALELSQCIVQALWDSDSP 149 (314)
T ss_dssp HHHHHHHCT-----HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-------B-----CCHHHHHHHHHHHHHHTS-TTS-G
T ss_pred HHHHHhccCCCcCchhHHhhHHhhhhhhHHHHHHHHHHHHhcc-------c-----HHHHHHHHHHHHHHHhhcCCCCCh
Confidence 9999999999999899999999999999999999999996543 3 678999999999999999999999
Q ss_pred cccCCCCCHHHHHHhhhcccCCCCHHHHHcCCHHHHHHHHhhCCHHHHHHHHHHHccCCceeEEEeEEEccCCCCccccc
Q psy12224 283 LLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMPYVDLHVQPEVIDDEATTEYTA 362 (904)
Q Consensus 283 LLQLPhvtee~lk~l~~kk~~V~sL~dL~~m~~eEr~~lL~~Lse~q~~dV~kvl~~~P~IeIea~~~V~deed~~~Itp 362 (904)
|+|||||+++.++++ .+.++.++++|++++.+++..+++ .++.++.++++++++||.++|++.+++.+++ +.
T Consensus 150 L~Qlp~i~~~~~~~l--~~~~i~~l~~l~~~~~~e~~~ll~-~~~~~~~~i~~~~~~~P~~~i~~~~~~~~~~----~~- 221 (314)
T PF02889_consen 150 LLQLPHIGEESLKKL--EKRGIKTLQDLRDLSPEELEELLN-RNPPFGKEILEVASRIPRLEIKASVQVIDEE----IV- 221 (314)
T ss_dssp GGGSTT--HHHHHHH--HHTT--SHHHHHHS-HHHHHHHH--S-HHHHHHHHHHHCCS--EEEEEEETTCCGE----EC-
T ss_pred hhcCCCCCHHHHHHH--hccCCCcHHHHhhCCHHHHHHHHh-hhhhhHHHHHHHHHHCCCEEEEEEEeccccc----cC-
Confidence 999999999999999 557789999999999999999986 5779999999999999999999887776553 22
Q ss_pred CceEEEEEEEEEccCCcccCCccccccccCCCCCCCCchhhhccCCCCCcccccccccccccccchhccccCCCcccccc
Q psy12224 363 GAIITVTCTLMRKPMSVLFGDDTIKVQFLEPSKEGEGEIEEEEEKPNGTITPVVNKEKQQTHRPVWMKNKKGGKKKKFTK 442 (904)
Q Consensus 363 GsiVTltV~L~R~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~W~k~kk~~k~~~~~~ 442 (904)
..++|.|+++|...
T Consensus 222 -~~~~v~v~i~~~~~----------------------------------------------------------------- 235 (314)
T PF02889_consen 222 -PILTVQVSITRKFS----------------------------------------------------------------- 235 (314)
T ss_dssp -SEEEEEEEEEESSS-----------------------------------------------------------------
T ss_pred -CcEEEEEEEEcccc-----------------------------------------------------------------
Confidence 66888888887421
Q ss_pred cccCCccccccccccccccccCCchhhhccccCCcccccccCCccccccccccccchhhhhccccccccCCCCCCCCCCC
Q psy12224 443 NKHDKKSSGQKKITNTVEQTEAPADVAKVEKKDTPEESKDVSSESEEESDLSDVENDEVVDKKEKNEDSNNKSEESSDDD 522 (904)
Q Consensus 443 ~~~~~k~~~~k~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~d 522 (904)
T Consensus 236 -------------------------------------------------------------------------------- 235 (314)
T PF02889_consen 236 -------------------------------------------------------------------------------- 235 (314)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHhhcccccccccccCCCCCcceeCCCCCCCCCcceEEEEEeCCCCeEEeccceeeeecc--eeEEEEEEEcCCC
Q psy12224 523 DDDWEKYQTGLNKRDKVLEGRSKQSHSVHCPRFPEDKQEFWWIYISDRKSRTLLTSPYHITELVD--QEQVQLKFTAPRW 600 (904)
Q Consensus 523 d~ewe~lq~~~~kre~~le~ks~~sh~VhaPyFP~eK~E~WWv~V~D~K~~~Ll~~p~~vt~L~~--~~ev~LkF~AP~~ 600 (904)
+.++||..|.|+||++|+|.++++|+..+. ++.... ..+..++|++|..
T Consensus 236 ----------------------------~~~~~~~~k~~~~~~~v~~~~~~~l~~~~~-~~~~~~~~~~~~~~~f~vp~~ 286 (314)
T PF02889_consen 236 ----------------------------WSDRFPKKKKESWWLFVGDSKNNELLHFER-ITISKKKSKDTVKISFQVPIP 286 (314)
T ss_dssp -----------------------------SST-SS--B--EEEEEEECCCTEEEEEEE-E---SS--EEEEEEEEE--SS
T ss_pred ----------------------------cccCCCCCCcccEEEEEEECCCCeEEEEee-eehhhhccCCcEEEEEEecCC
Confidence 012788889999999999999999999884 333133 6789999999988
Q ss_pred Cce--eEEEEEEEcCCCccccceEEEEE
Q psy12224 601 PGV--YTFSVCLRCDSYLGFDQMQDIKL 626 (904)
Q Consensus 601 pG~--y~ytv~v~SDSYlG~Dq~~dikl 626 (904)
+|. |+|+|+|+||+|+|+|++++|+|
T Consensus 287 ~~~~~~~~~v~v~sd~y~G~d~~~~i~~ 314 (314)
T PF02889_consen 287 VGPRPYQYTVYVISDSYLGLDQEVPINF 314 (314)
T ss_dssp -EE--EEEEEEEEESS-SS--EEEEEEE
T ss_pred CCCCCceEEEEEEECCccccceEEEeeC
Confidence 788 99999999999999999999986
No 5
>KOG0721|consensus
Probab=99.97 E-value=3.5e-33 Score=284.78 Aligned_cols=124 Identities=60% Similarity=0.939 Sum_probs=120.3
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhcCCCCCC---chHHHHHHHHHHHHHcCChHHHHHhhhcCCCCCCCCCccccccchhh
Q psy12224 7 TPLKPSGASEASIKKAYRKQSLILHPDKET---GDEKAFMKLTKAYQALTDEESRRNFEKYGNPDGPGAMSFGIALPSYI 83 (904)
Q Consensus 7 ILGV~~~As~~eIKkAYRkLSlkyHPDKnp---~~ee~F~kI~kAYevLtDp~~R~~YD~yG~pdg~~~~~~giaLP~~l 83 (904)
||||+++||.+|||||||+||+||||||+| ++++.|..|++||++|||+..|+||++||||||+|+.++|||||+|+
T Consensus 104 ILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PDGpq~~s~GIALPk~I 183 (230)
T KOG0721|consen 104 ILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNPDGPQATSFGIALPKWI 183 (230)
T ss_pred hhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCCCCccchhhHhhhHHHH
Confidence 999999999999999999999999999984 46789999999999999999999999999999999999999999999
Q ss_pred hhccccceeeeeehheecccccccceeeeeecccccCCccccchhhh
Q psy12224 84 VEKENSVWVLGLYALVFMVALPTAVGMWWYKSIRYTGDKVLLETINF 130 (904)
Q Consensus 84 v~~~n~~~vl~~y~llf~vilp~~vg~ww~~s~kyt~~~Vl~dTi~~ 130 (904)
++..++.+++++|+++|++++|+++++||+++++|++++|+++|+++
T Consensus 184 vd~~~s~~vl~~y~l~f~vilp~~v~~ww~rs~~yt~d~V~~~T~~~ 230 (230)
T KOG0721|consen 184 VDKEGSPGVLGFYGLVFGVILPVFVGRWWYRSRGYTGDGVHFVTTQM 230 (230)
T ss_pred HhcCCCchHHHHHHHHHHhHhHHHHHHHHHhhhcccCCceEEeeccC
Confidence 99999999999999999999999999999999999999999999864
No 6
>KOG0951|consensus
Probab=99.89 E-value=7.4e-23 Score=245.14 Aligned_cols=200 Identities=17% Similarity=0.271 Sum_probs=176.4
Q ss_pred cccchhhhhhhhcccCccccHHHHHHHHhcccccccccccccccCCchhhhHHHHHHhcCCCcccCCCCCCccchhhhHH
Q psy12224 123 VLLETINFYYAFFQITPHMALKRVLMILGASLEFDRRFNSEIIERPSDEIEVPQLIRQIPNLGEKNRERPLYHKYSIKAR 202 (904)
Q Consensus 123 Vl~dTi~~Fyy~~~ltp~mt~~~LL~ILS~A~EF~~~~n~eI~vR~~E~~eL~kL~k~lp~l~~k~Ke~~~~~~~~~KA~ 202 (904)
|++.+++.| +..+.+.|+.-++..+++.|.||+ .+.+|++|..+|.+|....|... +.....++.|++
T Consensus 818 i~~~s~~~y--n~~L~~~~~~i~lfrifs~seEfk-----~~svr~~ek~el~~l~~~vpIpi-----re~l~~p~akin 885 (1674)
T KOG0951|consen 818 ITHGSMATY--NELLKETMSEIDLFRIFSKSEEFK-----YVSVREEEKMELAKLLERVPIPI-----RENLDEPSAKIN 885 (1674)
T ss_pred eecchHHHH--Hhhhhhhhccchhhhhhhhccccc-----cCCccHHHHHHhhhhcccCCcCc-----hhccccchHHHH
Confidence 566677777 778889999999999999999999 99999999999999999988764 233456789999
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHhhccCcccchHHHHHHHHHHHHHHHhccCCCCCC
Q psy12224 203 ALIYAHLSNMQLTSETLEADRMYIVKKCPYLLQEMVTCISQLILLAYAQRVPRLIHIETLENVMKLCPMIVQGMWDFKNP 282 (904)
Q Consensus 203 iLLqAHLsRi~Lp~~dL~~D~~~IL~~apRLLqAMvdIa~~lg~la~~rr~~~~p~L~taln~m~L~QmIvQalW~~~SP 282 (904)
+|||+|+|++.+..++|..|+.||-+++.||+|||++|+. .|+| ...+..++.+|+|+.+++|+.+.|
T Consensus 886 vllq~yiS~lk~eG~al~~dmv~i~q~agRl~Ra~fei~l-------~rgw-----~~~~~~~l~~ck~v~~r~w~~~~p 953 (1674)
T KOG0951|consen 886 VLLQSYISQLKLEGFALTSDMVYITQSAGRLFRALFEIVL-------KRGW-----AGLAQMALNLCKMVEKRMWPTQTP 953 (1674)
T ss_pred HHHHHHHhhcccccceeeeeEEEeccchHHHHHHHHHHHh-------hcCc-----chHHHHHHHhHhHhhhhcccccCc
Confidence 9999999999999999999999999999999999999984 3555 778889999999999999999999
Q ss_pred cccCCCCCHHHHHHhhhcccCCCCHHHHHcCCHHHHHHHHhhCCHHHHHHHHHHHccCCceeEEEeEEE
Q psy12224 283 LLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMPYVDLHVQPEV 351 (904)
Q Consensus 283 LLQLPhvtee~lk~l~~kk~~V~sL~dL~~m~~eEr~~lL~~Lse~q~~dV~kvl~~~P~IeIea~~~V 351 (904)
|+|+|..+.++++.++.+. .....+.+++..+.+.+++ .+..+.-+..++.+||++.|.+.+++
T Consensus 954 lrqf~~~~~ev~~~lE~k~---~~~~r~~~l~~~elg~lI~--~~k~G~~l~~~~~~fpk~s~~~~vqp 1017 (1674)
T KOG0951|consen 954 LRQFKGCPKEVLRRLEKKE---LPWGRYYDLDPAELGELIG--VPKMGKPLHLFIRQFPKLSVSAHVQP 1017 (1674)
T ss_pred hhhcCCCCHHHHHHHHhcc---CcchhhhccCHHHHHHHhc--CcccChhHHHHHHhcccceeeeeeee
Confidence 9999999999999996433 5677888899999998887 77788889999999999999876554
No 7
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=6.7e-19 Score=195.30 Aligned_cols=70 Identities=34% Similarity=0.570 Sum_probs=63.4
Q ss_pred CCCCCC--ccCCCCCCCHHHHHHHHHHHHhhcCCCCCCc---hHHHHHHHHHHHHHcCChHHHHHhhhcCCCCCC
Q psy12224 1 MSGKSR--TPLKPSGASEASIKKAYRKQSLILHPDKETG---DEKAFMKLTKAYQALTDEESRRNFEKYGNPDGP 70 (904)
Q Consensus 1 m~g~~~--ILGV~~~As~~eIKkAYRkLSlkyHPDKnp~---~ee~F~kI~kAYevLtDp~~R~~YD~yG~pdg~ 70 (904)
|..+.| ||||+++||.+||||||||||+|||||+|++ ++++|.+|++||+||+||++|+.||+||+....
T Consensus 1 ~~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~ 75 (371)
T COG0484 1 MAKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFK 75 (371)
T ss_pred CCccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccc
Confidence 444444 9999999999999999999999999999983 468999999999999999999999999998765
No 8
>KOG0713|consensus
Probab=99.72 E-value=5.4e-18 Score=184.07 Aligned_cols=66 Identities=39% Similarity=0.689 Sum_probs=60.6
Q ss_pred CCCC--ccCCCCCCCHHHHHHHHHHHHhhcCCCCCCchH---HHHHHHHHHHHHcCChHHHHHhhhcCCCC
Q psy12224 3 GKSR--TPLKPSGASEASIKKAYRKQSLILHPDKETGDE---KAFMKLTKAYQALTDEESRRNFEKYGNPD 68 (904)
Q Consensus 3 g~~~--ILGV~~~As~~eIKkAYRkLSlkyHPDKnp~~e---e~F~kI~kAYevLtDp~~R~~YD~yG~pd 68 (904)
|..+ ||||+++|+.+|||+|||||||||||||||+++ +.|++|+.||+||+||++|+.||+||...
T Consensus 15 ~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEeg 85 (336)
T KOG0713|consen 15 GRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEG 85 (336)
T ss_pred CCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhh
Confidence 4554 999999999999999999999999999998765 78999999999999999999999999643
No 9
>KOG0952|consensus
Probab=99.66 E-value=1.2e-16 Score=190.80 Aligned_cols=189 Identities=18% Similarity=0.228 Sum_probs=154.6
Q ss_pred CccccchhhhhhhhcccCccccHHHHHHHHhcccccccccccccccCCchhhhHHHHHHhcCCCcccCCCCCCccchhhh
Q psy12224 121 DKVLLETINFYYAFFQITPHMALKRVLMILGASLEFDRRFNSEIIERPSDEIEVPQLIRQIPNLGEKNRERPLYHKYSIK 200 (904)
Q Consensus 121 ~~Vl~dTi~~Fyy~~~ltp~mt~~~LL~ILS~A~EF~~~~n~eI~vR~~E~~eL~kL~k~lp~l~~k~Ke~~~~~~~~~K 200 (904)
-.|.++|++.| +...++.|+..++|.++|.|.||+ +|++|++|.++|++|....+.... +.. .+.|
T Consensus 608 yYik~ETme~~--nn~~k~~~se~~iL~lis~aeEfs-----~ik~R~eE~k~l~el~~~~~~~~~------~~~-~~gk 673 (1230)
T KOG0952|consen 608 YYIKYETMETF--NNLPKSFYSEDDILALISMAEEFS-----QIKVREEEKKELKELNEDSCEKYP------FGG-EKGK 673 (1230)
T ss_pred hhhhhHHHHHH--HhcccccCCHHHHHHHHHhhHhhh-----hhhhhhhhHHHHHHHHhccccccc------ccc-cchh
Confidence 35888999999 667778999999999999999999 999999999999999887654332 111 2689
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHhhccCcccchHHHHHHHHHHHHHHHhccCCCC
Q psy12224 201 ARALIYAHLSNMQLTSETLEADRMYIVKKCPYLLQEMVTCISQLILLAYAQRVPRLIHIETLENVMKLCPMIVQGMWDFK 280 (904)
Q Consensus 201 A~iLLqAHLsRi~Lp~~dL~~D~~~IL~~apRLLqAMvdIa~~lg~la~~rr~~~~p~L~taln~m~L~QmIvQalW~~~ 280 (904)
+++|+|+|++|..+..++|.+|..||.+++.||++||+.++...+ | -..+.+++.||+||..+||.+.
T Consensus 674 ~nil~q~~Is~~~~~~f~L~sD~~yv~qna~ri~ralf~i~~~~~-------~-----~~~~~~~l~l~k~ier~mw~~~ 741 (1230)
T KOG0952|consen 674 VNILLQAYISRTEVKDFSLMSDSLYVAQNAGRISRALFQIVLRQN-------W-----HLLSNRMLNLCKRIERRMWDFF 741 (1230)
T ss_pred HHHHHHhhhhccceeeeeeccCcccccccHHHHHHHHHHHHHHhC-------c-----hHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999986544 3 3457789999999999999999
Q ss_pred CCcccCCCCCHHHHHHhhhcccCCCCHHHHHcCCHHHHHHHHhhCCHHHHHHHHHHHccCCceeEEEeEE
Q psy12224 281 NPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMPYVDLHVQPE 350 (904)
Q Consensus 281 SPLLQLPhvtee~lk~l~~kk~~V~sL~dL~~m~~eEr~~lL~~Lse~q~~dV~kvl~~~P~IeIea~~~ 350 (904)
+||.|++.... ++ ++++ ..|..|..++.+.++.. .. ..++.+..+|.+++++.+.
T Consensus 742 ~~l~qf~~~~~---~~-~~~~------~~l~~L~~~~~g~~w~~--~~---~~~k~l~~ip~v~v~a~~~ 796 (1230)
T KOG0952|consen 742 IPLKQFTLLLN---RK-ERKK------LTLLLLRKDELGELWHN--VP---YGLKQLSGIPLVNVEALIQ 796 (1230)
T ss_pred hhhhcCCcccc---hh-hhhc------chHHhhhhhhhcccccc--Cc---hhhhhhccCCceehhhhhc
Confidence 99999997644 22 2122 17777778888877762 21 2288999999999987544
No 10
>KOG0712|consensus
Probab=99.63 E-value=2.8e-16 Score=172.48 Aligned_cols=64 Identities=38% Similarity=0.598 Sum_probs=60.9
Q ss_pred CCccCCCCCCCHHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHcCChHHHHHhhhcCCCC
Q psy12224 5 SRTPLKPSGASEASIKKAYRKQSLILHPDKETGDEKAFMKLTKAYQALTDEESRRNFEKYGNPD 68 (904)
Q Consensus 5 ~~ILGV~~~As~~eIKkAYRkLSlkyHPDKnp~~ee~F~kI~kAYevLtDp~~R~~YD~yG~pd 68 (904)
+.||||+++||..|||||||+||++|||||||++.++|++|+.||+||+||++|+.||+||...
T Consensus 7 y~il~v~~~As~~eikkayrkla~k~HpDkn~~~~ekfkei~~AyevLsd~ekr~~yD~~g~~~ 70 (337)
T KOG0712|consen 7 YDILGVSPDASEEEIKKAYRKLALKYHPDKNPDAGEKFKEISQAYEVLSDPEKREIYDQYGEEG 70 (337)
T ss_pred ceeeccCCCcCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHHhhhhhh
Confidence 3399999999999999999999999999999999999999999999999999999999999654
No 11
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.59 E-value=1.4e-15 Score=171.39 Aligned_cols=61 Identities=34% Similarity=0.636 Sum_probs=57.7
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhcCCCCCCc---hHHHHHHHHHHHHHcCChHHHHHhhhcCCC
Q psy12224 7 TPLKPSGASEASIKKAYRKQSLILHPDKETG---DEKAFMKLTKAYQALTDEESRRNFEKYGNP 67 (904)
Q Consensus 7 ILGV~~~As~~eIKkAYRkLSlkyHPDKnp~---~ee~F~kI~kAYevLtDp~~R~~YD~yG~p 67 (904)
||||+++||.+|||+|||+||++||||+|++ ++++|++|++||+||+||++|+.||+||..
T Consensus 8 vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~ 71 (369)
T PRK14288 8 ILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKK 71 (369)
T ss_pred HcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhccc
Confidence 9999999999999999999999999999964 457999999999999999999999999974
No 12
>PRK00254 ski2-like helicase; Provisional
Probab=99.58 E-value=5.6e-15 Score=179.23 Aligned_cols=194 Identities=10% Similarity=0.124 Sum_probs=148.6
Q ss_pred cccchhhhhhhhcccC---ccccHHHHHHHHhcccccccccccccccCCchhhhHHHHHHhcCC-Cc--ccCCCCCCcc-
Q psy12224 123 VLLETINFYYAFFQIT---PHMALKRVLMILGASLEFDRRFNSEIIERPSDEIEVPQLIRQIPN-LG--EKNRERPLYH- 195 (904)
Q Consensus 123 Vl~dTi~~Fyy~~~lt---p~mt~~~LL~ILS~A~EF~~~~n~eI~vR~~E~~eL~kL~k~lp~-l~--~k~Ke~~~~~- 195 (904)
|.++|+..|. ..++ .+++...+|++||.|.||. .+++|++|...+..+...+.. +. ...+......
T Consensus 492 i~~~t~~~~~--~~l~~~~~~~~~~~~l~~~~~~~e~~-----~~~~r~~e~~~l~~~~~~~~~~l~~~~~~~~~~~~~~ 564 (720)
T PRK00254 492 IDPLTAKKFK--DAFPKIEKNPNPLGIFQLIASTPDMT-----PLNYSRKEMEDLLDEAYEMEDRLYFNIPYWEDYKFQK 564 (720)
T ss_pred CCHHHHHHHH--HHHHhhccCCCHHHHHHHhhCCcccc-----ccCcchhhHHHHHHHHHhhcccccccCCcchhhHHHH
Confidence 4555666663 2332 3678899999999999999 999999998888744333210 00 0000000011
Q ss_pred -chhhhHHHHHHHHhcCCCCChhhH------HHHHHHHHHhhhHHHHHHHHHHHHhHHHHhhccCcccchHHHHHHHHHH
Q psy12224 196 -KYSIKARALIYAHLSNMQLTSETL------EADRMYIVKKCPYLLQEMVTCISQLILLAYAQRVPRLIHIETLENVMKL 268 (904)
Q Consensus 196 -~~~~KA~iLLqAHLsRi~Lp~~dL------~~D~~~IL~~apRLLqAMvdIa~~lg~la~~rr~~~~p~L~taln~m~L 268 (904)
-++.|+++|||+|++|++++. .+ ..|++.|++++.+|++||++|+..+|+.. .| ++ .+-+|
T Consensus 565 ~~~~~k~~~ll~~~~~~~~~~~-~~~~~~~~~gd~~~~~~~~~~l~~a~~~i~~~~~~~~---~~-----~~---~l~~l 632 (720)
T PRK00254 565 FLRAFKTAKVLLDWINEVPEGE-IVETYNIDPGDLYRILELADWLMYSLIELYKLFEPKQ---EV-----LD---YLETL 632 (720)
T ss_pred HHHHHHHHHHHHHHHcCCCHHH-HHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHhCcch---hH-----HH---HHHHH
Confidence 257899999999999999864 55 68999999999999999999998665311 11 32 23389
Q ss_pred HHHHHhccCCCCCCcccCCCCCHHHHHHhhhcccCCCCHHHHHcCCHHHHHHHHhhCCHHHHHHHHHHHc
Q psy12224 269 CPMIVQGMWDFKNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLG 338 (904)
Q Consensus 269 ~QmIvQalW~~~SPLLQLPhvtee~lk~l~~kk~~V~sL~dL~~m~~eEr~~lL~~Lse~q~~dV~kvl~ 338 (904)
+|||+||+|...+||.|+|||+...+++| .+.++.|+.++..++.+++..+. +++...++.|.+.++
T Consensus 633 ~~rl~~g~~~~~~~L~~ipgig~~~~~~l--~~~g~~s~~~i~~a~~~el~~~~-gi~~~~a~~i~~~~~ 699 (720)
T PRK00254 633 HLRVKHGVREELLELMRLPMIGRKRARAL--YNAGFRSIEDIVNAKPSELLKVE-GIGAKIVEGIFKHLG 699 (720)
T ss_pred HHHHHcCCCHHHhhhhcCCCCCHHHHHHH--HHccCCCHHHHHhCCHHHHhcCC-CCCHHHHHHHHHHhc
Confidence 99999999999999999999999999999 67789999999999999988764 478889999999987
No 13
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.57 E-value=2.3e-15 Score=169.72 Aligned_cols=67 Identities=27% Similarity=0.479 Sum_probs=61.0
Q ss_pred CCCCCC--ccCCCCCCCHHHHHHHHHHHHhhcCCCCCCc--hHHHHHHHHHHHHHcCChHHHHHhhhcCCC
Q psy12224 1 MSGKSR--TPLKPSGASEASIKKAYRKQSLILHPDKETG--DEKAFMKLTKAYQALTDEESRRNFEKYGNP 67 (904)
Q Consensus 1 m~g~~~--ILGV~~~As~~eIKkAYRkLSlkyHPDKnp~--~ee~F~kI~kAYevLtDp~~R~~YD~yG~p 67 (904)
|+.+.| ||||+++||.+|||+|||+||++||||+|++ ++++|++|++||++|+||++|+.||+||..
T Consensus 1 m~~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~ 71 (372)
T PRK14296 1 MKKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGHA 71 (372)
T ss_pred CCCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhccch
Confidence 664444 9999999999999999999999999999853 568999999999999999999999999974
No 14
>PRK02362 ski2-like helicase; Provisional
Probab=99.56 E-value=1.4e-14 Score=176.24 Aligned_cols=187 Identities=12% Similarity=0.086 Sum_probs=146.6
Q ss_pred cccchhhhhhhhcccCc--cccHHHHHHHHhcccccccccccccccCCchhhhHHHHHHh--------cCCCcccCCCCC
Q psy12224 123 VLLETINFYYAFFQITP--HMALKRVLMILGASLEFDRRFNSEIIERPSDEIEVPQLIRQ--------IPNLGEKNRERP 192 (904)
Q Consensus 123 Vl~dTi~~Fyy~~~ltp--~mt~~~LL~ILS~A~EF~~~~n~eI~vR~~E~~eL~kL~k~--------lp~l~~k~Ke~~ 192 (904)
+.+.|+..|. ..++. ..+...+|.+||.|.||. .+++|++|...+.++... +|... . ..
T Consensus 501 l~~~t~~~~~--~~l~~~~~~~~~~~l~~i~~~~e~~-----~~~~r~~e~~~l~~~~~~~~~~~~~~~p~~~---~-~~ 569 (737)
T PRK02362 501 IDPLSAAEII--DGLEAAKKPTDLGLLHLVCSTPDMY-----ELYLRSGDYEWLNEYLYEHEDELLGDVPSEF---E-DD 569 (737)
T ss_pred CCHHHHHHHH--HHhhhcccCchHHHHHHhhcCcccc-----ccccChhHHHHHHHHHHhcccchhccCCchh---h-hh
Confidence 4556666663 23333 347889999999999999 899999999888887522 22210 0 11
Q ss_pred Ccc--chhhhHHHHHHHHhcCCCCChhh--H---HHHHHHHHHhhhHHHHHHHHHHHHhHHHHhhccCcccchHHHHHHH
Q psy12224 193 LYH--KYSIKARALIYAHLSNMQLTSET--L---EADRMYIVKKCPYLLQEMVTCISQLILLAYAQRVPRLIHIETLENV 265 (904)
Q Consensus 193 ~~~--~~~~KA~iLLqAHLsRi~Lp~~d--L---~~D~~~IL~~apRLLqAMvdIa~~lg~la~~rr~~~~p~L~taln~ 265 (904)
... .++.|+++|||+|++|.+++.-. + ..|++.+++++.+|++|++++|...+ +..+..+
T Consensus 570 ~~~~~~~~~k~~~ll~~~i~~~~~~~i~~~~~~~~gdl~~~~~~~~~l~~a~~~i~~~~~-------------~~~~~~~ 636 (737)
T PRK02362 570 EFEDFLSAVKTALLLEDWIDEVDEERITERYGVGPGDIRGKVETAEWLLHAAERLASELD-------------LDLARAA 636 (737)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHhC-------------ccHHHHH
Confidence 111 26789999999999999964211 1 46899999999999999999975432 3357789
Q ss_pred HHHHHHHHhccCCCCCCcccCCCCCHHHHHHhhhcccCCCCHHHHHcCCHHHHHHHHhhCCHHHHHHHHHHHc
Q psy12224 266 MKLCPMIVQGMWDFKNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLG 338 (904)
Q Consensus 266 m~L~QmIvQalW~~~SPLLQLPhvtee~lk~l~~kk~~V~sL~dL~~m~~eEr~~lL~~Lse~q~~dV~kvl~ 338 (904)
|.|+|||.||+|...+||+|||||+...++.| .+.++.|+.+|+.++++++..+ +.....+.|++.++
T Consensus 637 ~~l~~~l~~gv~~~~~~L~~ip~i~~~~a~~l--~~~gi~s~~dl~~~~~~~l~~~---~g~~~~~~i~~~~~ 704 (737)
T PRK02362 637 RELEKRVEYGVREELLDLVGLRGVGRVRARRL--YNAGIESRADLRAADKSVVLAI---LGEKIAENILEQAG 704 (737)
T ss_pred HHHHHHHHhCCCHHHHHHhCCCCCCHHHHHHH--HHcCCCCHHHHHhCCHHHHHHH---HCHHHHHHHHHHhC
Confidence 99999999999999999999999999999999 5689999999999999999887 46777778887766
No 15
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.53 E-value=8.2e-15 Score=167.35 Aligned_cols=60 Identities=35% Similarity=0.641 Sum_probs=57.6
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHcCChHHHHHhhhcCCC
Q psy12224 7 TPLKPSGASEASIKKAYRKQSLILHPDKETGDEKAFMKLTKAYQALTDEESRRNFEKYGNP 67 (904)
Q Consensus 7 ILGV~~~As~~eIKkAYRkLSlkyHPDKnp~~ee~F~kI~kAYevLtDp~~R~~YD~yG~p 67 (904)
||||+++||.+|||+|||+||++||||||+ ++++|++|++||++|+||.+|+.||+||..
T Consensus 33 vLGV~~~As~~eIKkAYrkla~k~HPDk~~-~~e~F~~i~~AYevLsD~~kR~~YD~~G~~ 92 (421)
T PTZ00037 33 VLNLSKDCTTSEIKKAYRKLAIKHHPDKGG-DPEKFKEISRAYEVLSDPEKRKIYDEYGEE 92 (421)
T ss_pred HcCCCCCCCHHHHHHHHHHHHHHHCCCCCc-hHHHHHHHHHHHHHhccHHHHHHHhhhcch
Confidence 999999999999999999999999999995 579999999999999999999999999864
No 16
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.51 E-value=1.2e-14 Score=164.83 Aligned_cols=60 Identities=35% Similarity=0.506 Sum_probs=57.1
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhcCCCCCCc---hHHHHHHHHHHHHHcCChHHHHHhhhcCC
Q psy12224 7 TPLKPSGASEASIKKAYRKQSLILHPDKETG---DEKAFMKLTKAYQALTDEESRRNFEKYGN 66 (904)
Q Consensus 7 ILGV~~~As~~eIKkAYRkLSlkyHPDKnp~---~ee~F~kI~kAYevLtDp~~R~~YD~yG~ 66 (904)
||||+++||.+|||+|||+||++||||+|++ ++++|++|++||++|+||++|+.||+||.
T Consensus 14 ~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~ 76 (392)
T PRK14279 14 ELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRR 76 (392)
T ss_pred hcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhh
Confidence 9999999999999999999999999999974 45899999999999999999999999985
No 17
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.51 E-value=1.5e-14 Score=163.02 Aligned_cols=67 Identities=36% Similarity=0.618 Sum_probs=60.6
Q ss_pred CCCCCC--ccCCCCCCCHHHHHHHHHHHHhhcCCCCCCc---hHHHHHHHHHHHHHcCChHHHHHhhhcCCC
Q psy12224 1 MSGKSR--TPLKPSGASEASIKKAYRKQSLILHPDKETG---DEKAFMKLTKAYQALTDEESRRNFEKYGNP 67 (904)
Q Consensus 1 m~g~~~--ILGV~~~As~~eIKkAYRkLSlkyHPDKnp~---~ee~F~kI~kAYevLtDp~~R~~YD~yG~p 67 (904)
|+...| ||||+++||.+|||+|||+||++||||+|++ ++++|++|++||+||+||.+|+.||+||..
T Consensus 1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~ 72 (372)
T PRK14286 1 MSERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKA 72 (372)
T ss_pred CCCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCch
Confidence 654444 9999999999999999999999999999864 458999999999999999999999999964
No 18
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.51 E-value=1.7e-14 Score=162.71 Aligned_cols=67 Identities=30% Similarity=0.516 Sum_probs=60.6
Q ss_pred CCCCCC--ccCCCCCCCHHHHHHHHHHHHhhcCCCCCCc--hHHHHHHHHHHHHHcCChHHHHHhhhcCCC
Q psy12224 1 MSGKSR--TPLKPSGASEASIKKAYRKQSLILHPDKETG--DEKAFMKLTKAYQALTDEESRRNFEKYGNP 67 (904)
Q Consensus 1 m~g~~~--ILGV~~~As~~eIKkAYRkLSlkyHPDKnp~--~ee~F~kI~kAYevLtDp~~R~~YD~yG~p 67 (904)
|+...| ||||+++||..|||+|||+||++||||+|+. ++++|++|++||++|+||.+|+.||+||..
T Consensus 1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~ 71 (371)
T PRK14287 1 MSKRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHT 71 (371)
T ss_pred CCCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCc
Confidence 554444 9999999999999999999999999999853 567999999999999999999999999974
No 19
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.50 E-value=2.1e-14 Score=161.77 Aligned_cols=67 Identities=25% Similarity=0.483 Sum_probs=60.9
Q ss_pred CCCCCC--ccCCCCCCCHHHHHHHHHHHHhhcCCCCCCch----HHHHHHHHHHHHHcCChHHHHHhhhcCCC
Q psy12224 1 MSGKSR--TPLKPSGASEASIKKAYRKQSLILHPDKETGD----EKAFMKLTKAYQALTDEESRRNFEKYGNP 67 (904)
Q Consensus 1 m~g~~~--ILGV~~~As~~eIKkAYRkLSlkyHPDKnp~~----ee~F~kI~kAYevLtDp~~R~~YD~yG~p 67 (904)
|+.+.| ||||+++||..|||+|||+|+++||||+|+++ +++|++|++||++|+||.+|+.||+||..
T Consensus 1 ~~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~ 73 (369)
T PRK14282 1 REKKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYV 73 (369)
T ss_pred CCCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCcc
Confidence 665555 99999999999999999999999999998643 57999999999999999999999999864
No 20
>PRK01172 ski2-like helicase; Provisional
Probab=99.50 E-value=9.8e-14 Score=167.22 Aligned_cols=182 Identities=12% Similarity=0.113 Sum_probs=141.1
Q ss_pred cccchhhhhhhhcccCccccHHHHHHHHhcccccccccccccccCCchhhhHHHHHHhcCCCcccCCCCCCccchhhhHH
Q psy12224 123 VLLETINFYYAFFQITPHMALKRVLMILGASLEFDRRFNSEIIERPSDEIEVPQLIRQIPNLGEKNRERPLYHKYSIKAR 202 (904)
Q Consensus 123 Vl~dTi~~Fyy~~~ltp~mt~~~LL~ILS~A~EF~~~~n~eI~vR~~E~~eL~kL~k~lp~l~~k~Ke~~~~~~~~~KA~ 202 (904)
+.++|+..| ...++..++...+|.+||.|.|| +++|+.++..+.++...++... ...++.|++
T Consensus 479 l~~~t~~~~--~~~l~~~~~~~~~l~~~~~~~e~-------~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~k~~ 541 (674)
T PRK01172 479 IDPESALIL--KSAFDHDYDEDLALYYISLCREI-------IPANTRDDYYAMEFLEDIGVID--------GDISAAKTA 541 (674)
T ss_pred CCHHHHHHH--HHHhhccCCHHHHHHHhhcCccc-------cccccchHHHHHHHHHHhcccc--------chhHHHHHH
Confidence 334445555 34556677889999999999999 4677788878888877765421 123579999
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHhh-ccCcccchHHHHHHHHHHHHH-------HHh
Q psy12224 203 ALIYAHLSNMQLTSETLEADRMYIVKKCPYLLQEMVTCISQLILLAYA-QRVPRLIHIETLENVMKLCPM-------IVQ 274 (904)
Q Consensus 203 iLLqAHLsRi~Lp~~dL~~D~~~IL~~apRLLqAMvdIa~~lg~la~~-rr~~~~p~L~taln~m~L~Qm-------IvQ 274 (904)
+|||||++|++++. +..++..++.++++|++-+ +|++++ .+ +... ..|+++|| |+|
T Consensus 542 ~ll~~~~~~~~~~~------i~~~~~~~~g~l~~~~~~~---~~~~~a~~~------~~~~-~~~~~~~~l~~~~~rl~~ 605 (674)
T PRK01172 542 MVLRGWISEASMQK------ITDTYGIAPGDVQARASSA---DWISYSLAR------LSSI-YKPEMRRKLEILNIRIKE 605 (674)
T ss_pred HHHHHHHcCCCHHH------HHHHhCCChHHHHHHHHHH---HHHHHHHHH------HHHH-hhHHHHHHHHHHHHHHHc
Confidence 99999999999853 5667899999999996544 444311 00 1111 12888999 999
Q ss_pred ccCCCCCCcccCCCCCHHHHHHhhhcccCCCCHHHHHcCCHHHHHHHHhhCCHHHHHHHHHHHccC
Q psy12224 275 GMWDFKNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNM 340 (904)
Q Consensus 275 alW~~~SPLLQLPhvtee~lk~l~~kk~~V~sL~dL~~m~~eEr~~lL~~Lse~q~~dV~kvl~~~ 340 (904)
|+|...+||+|||||+...+++| .+.++.|+.||+.+++++|..+++ +++.+.+.|...++.+
T Consensus 606 gv~~~~~~L~~ip~~~~~~a~~l--~~~g~~~~~di~~~~~~~~~~i~~-~~~~~~~~i~~~~~~~ 668 (674)
T PRK01172 606 GIREDLIDLVLIPKVGRVRARRL--YDAGFKTVDDIARSSPERIKKIYG-FSDTLANAIVNRAMKI 668 (674)
T ss_pred CCCHHHHhhcCCCCCCHHHHHHH--HHcCCCCHHHHHhCCHHHHHHHhc-cCHHHHHHHHHHHHHH
Confidence 99999999999999999999999 778999999999999999999885 8999999888876653
No 21
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.49 E-value=3.3e-14 Score=160.11 Aligned_cols=68 Identities=34% Similarity=0.579 Sum_probs=62.0
Q ss_pred CCCCCC--ccCCCCCCCHHHHHHHHHHHHhhcCCCCCCc---hHHHHHHHHHHHHHcCChHHHHHhhhcCCCC
Q psy12224 1 MSGKSR--TPLKPSGASEASIKKAYRKQSLILHPDKETG---DEKAFMKLTKAYQALTDEESRRNFEKYGNPD 68 (904)
Q Consensus 1 m~g~~~--ILGV~~~As~~eIKkAYRkLSlkyHPDKnp~---~ee~F~kI~kAYevLtDp~~R~~YD~yG~pd 68 (904)
|++++| ||||+++||.+|||+|||+||++||||+|++ ++++|++|++||++|+|+.+|..||+||...
T Consensus 1 ~~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g 73 (366)
T PRK14294 1 MVKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEG 73 (366)
T ss_pred CCCCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhcccc
Confidence 676666 9999999999999999999999999999964 3579999999999999999999999999753
No 22
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.48 E-value=3.7e-14 Score=155.13 Aligned_cols=67 Identities=36% Similarity=0.569 Sum_probs=60.9
Q ss_pred CCCCCC--ccCCCCCCCHHHHHHHHHHHHhhcCCCCCCc--hHHHHHHHHHHHHHcCChHHHHHhhhcCCC
Q psy12224 1 MSGKSR--TPLKPSGASEASIKKAYRKQSLILHPDKETG--DEKAFMKLTKAYQALTDEESRRNFEKYGNP 67 (904)
Q Consensus 1 m~g~~~--ILGV~~~As~~eIKkAYRkLSlkyHPDKnp~--~ee~F~kI~kAYevLtDp~~R~~YD~yG~p 67 (904)
|+.++| ||||+++||.+|||+|||+||++||||+|+. ++++|+.|++||++|+|+.+|+.||+||..
T Consensus 1 m~~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~ 71 (291)
T PRK14299 1 MAYKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTT 71 (291)
T ss_pred CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCc
Confidence 554445 9999999999999999999999999999853 568999999999999999999999999975
No 23
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.48 E-value=4.5e-14 Score=159.73 Aligned_cols=67 Identities=33% Similarity=0.534 Sum_probs=60.8
Q ss_pred CCCCCC--ccCCCCCCCHHHHHHHHHHHHhhcCCCCCCc--hHHHHHHHHHHHHHcCChHHHHHhhhcCCC
Q psy12224 1 MSGKSR--TPLKPSGASEASIKKAYRKQSLILHPDKETG--DEKAFMKLTKAYQALTDEESRRNFEKYGNP 67 (904)
Q Consensus 1 m~g~~~--ILGV~~~As~~eIKkAYRkLSlkyHPDKnp~--~ee~F~kI~kAYevLtDp~~R~~YD~yG~p 67 (904)
|+..+| ||||+++||.+|||+|||+||++||||+|+. ++++|++|++||++|+||.+|+.||+||..
T Consensus 1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~ 71 (380)
T PRK14276 1 MNNTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAA 71 (380)
T ss_pred CCCCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCc
Confidence 554444 9999999999999999999999999999853 568999999999999999999999999974
No 24
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.47 E-value=4.5e-14 Score=159.57 Aligned_cols=67 Identities=34% Similarity=0.595 Sum_probs=60.5
Q ss_pred CC-CCCC--ccCCCCCCCHHHHHHHHHHHHhhcCCCCCCc--hHHHHHHHHHHHHHcCChHHHHHhhhcCCC
Q psy12224 1 MS-GKSR--TPLKPSGASEASIKKAYRKQSLILHPDKETG--DEKAFMKLTKAYQALTDEESRRNFEKYGNP 67 (904)
Q Consensus 1 m~-g~~~--ILGV~~~As~~eIKkAYRkLSlkyHPDKnp~--~ee~F~kI~kAYevLtDp~~R~~YD~yG~p 67 (904)
|+ .+.| ||||+++||.+|||+|||+||++||||+|+. ++++|++|++||++|+||.+|+.||+||..
T Consensus 1 ~~~~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~ 72 (377)
T PRK14298 1 MATTRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHA 72 (377)
T ss_pred CCCCCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcCcc
Confidence 55 4444 9999999999999999999999999999853 568999999999999999999999999964
No 25
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.47 E-value=4.8e-14 Score=158.70 Aligned_cols=61 Identities=39% Similarity=0.683 Sum_probs=57.6
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhcCCCCCCc---hHHHHHHHHHHHHHcCChHHHHHhhhcCCC
Q psy12224 7 TPLKPSGASEASIKKAYRKQSLILHPDKETG---DEKAFMKLTKAYQALTDEESRRNFEKYGNP 67 (904)
Q Consensus 7 ILGV~~~As~~eIKkAYRkLSlkyHPDKnp~---~ee~F~kI~kAYevLtDp~~R~~YD~yG~p 67 (904)
||||+++||.+|||+|||+|+++||||+|++ ++++|++|++||++|+|+.+|..||+||..
T Consensus 8 iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~ 71 (365)
T PRK14285 8 ILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHT 71 (365)
T ss_pred hcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcc
Confidence 9999999999999999999999999999964 347899999999999999999999999974
No 26
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.46 E-value=5.8e-14 Score=158.70 Aligned_cols=61 Identities=38% Similarity=0.557 Sum_probs=57.7
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhcCCCCCCc--hHHHHHHHHHHHHHcCChHHHHHhhhcCCC
Q psy12224 7 TPLKPSGASEASIKKAYRKQSLILHPDKETG--DEKAFMKLTKAYQALTDEESRRNFEKYGNP 67 (904)
Q Consensus 7 ILGV~~~As~~eIKkAYRkLSlkyHPDKnp~--~ee~F~kI~kAYevLtDp~~R~~YD~yG~p 67 (904)
||||+++||.+|||+|||+||++||||+|++ ++++|++|++||++|+|+.+|+.||+||..
T Consensus 8 iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~ 70 (378)
T PRK14278 8 LLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDP 70 (378)
T ss_pred ecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCc
Confidence 9999999999999999999999999999975 457899999999999999999999999974
No 27
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.46 E-value=6e-14 Score=158.60 Aligned_cols=61 Identities=34% Similarity=0.624 Sum_probs=57.8
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhcCCCCCC--chHHHHHHHHHHHHHcCChHHHHHhhhcCCC
Q psy12224 7 TPLKPSGASEASIKKAYRKQSLILHPDKET--GDEKAFMKLTKAYQALTDEESRRNFEKYGNP 67 (904)
Q Consensus 7 ILGV~~~As~~eIKkAYRkLSlkyHPDKnp--~~ee~F~kI~kAYevLtDp~~R~~YD~yG~p 67 (904)
||||+++||.+|||+|||+||++||||+|+ .++++|.+|++||++|+|+.+|+.||+||..
T Consensus 10 ~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~ 72 (378)
T PRK14283 10 VLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFGHA 72 (378)
T ss_pred hhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhhccc
Confidence 999999999999999999999999999985 4568999999999999999999999999964
No 28
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.46 E-value=7.7e-14 Score=157.64 Aligned_cols=67 Identities=33% Similarity=0.608 Sum_probs=60.8
Q ss_pred CCCCCC--ccCCCCCCCHHHHHHHHHHHHhhcCCCCCC--chHHHHHHHHHHHHHcCChHHHHHhhhcCCC
Q psy12224 1 MSGKSR--TPLKPSGASEASIKKAYRKQSLILHPDKET--GDEKAFMKLTKAYQALTDEESRRNFEKYGNP 67 (904)
Q Consensus 1 m~g~~~--ILGV~~~As~~eIKkAYRkLSlkyHPDKnp--~~ee~F~kI~kAYevLtDp~~R~~YD~yG~p 67 (904)
|+...| ||||+++||.++||+|||+||++||||+|+ .++++|++|++||++|+||.+|..||+||..
T Consensus 1 ~~~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~ 71 (376)
T PRK14280 1 MAKRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFGHA 71 (376)
T ss_pred CCCCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcCcc
Confidence 554444 999999999999999999999999999985 3568999999999999999999999999974
No 29
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.45 E-value=7e-14 Score=157.79 Aligned_cols=67 Identities=37% Similarity=0.626 Sum_probs=60.7
Q ss_pred CCCCCC--ccCCCCCCCHHHHHHHHHHHHhhcCCCCCCch---HHHHHHHHHHHHHcCChHHHHHhhhcCCC
Q psy12224 1 MSGKSR--TPLKPSGASEASIKKAYRKQSLILHPDKETGD---EKAFMKLTKAYQALTDEESRRNFEKYGNP 67 (904)
Q Consensus 1 m~g~~~--ILGV~~~As~~eIKkAYRkLSlkyHPDKnp~~---ee~F~kI~kAYevLtDp~~R~~YD~yG~p 67 (904)
|+..+| ||||+++||..+||+|||+||++||||+|+++ +++|++|++||++|+||.+|..||+||..
T Consensus 1 ~~~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~ 72 (373)
T PRK14301 1 MSQRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHA 72 (373)
T ss_pred CCCCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhcccc
Confidence 555555 99999999999999999999999999998653 46999999999999999999999999964
No 30
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.45 E-value=7.2e-14 Score=158.08 Aligned_cols=67 Identities=36% Similarity=0.657 Sum_probs=60.7
Q ss_pred CCCCCC--ccCCCCCCCHHHHHHHHHHHHhhcCCCCCCc---hHHHHHHHHHHHHHcCChHHHHHhhhcCCC
Q psy12224 1 MSGKSR--TPLKPSGASEASIKKAYRKQSLILHPDKETG---DEKAFMKLTKAYQALTDEESRRNFEKYGNP 67 (904)
Q Consensus 1 m~g~~~--ILGV~~~As~~eIKkAYRkLSlkyHPDKnp~---~ee~F~kI~kAYevLtDp~~R~~YD~yG~p 67 (904)
|+..+| ||||+++||.++||+|||+||++||||+|++ ++++|++|++||++|+||.+|..||+||..
T Consensus 1 ~~~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~ 72 (380)
T PRK14297 1 MASKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTA 72 (380)
T ss_pred CCCCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcc
Confidence 554444 9999999999999999999999999999964 357999999999999999999999999974
No 31
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.44 E-value=1.2e-13 Score=156.65 Aligned_cols=61 Identities=33% Similarity=0.606 Sum_probs=57.5
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhcCCCCCCc---hHHHHHHHHHHHHHcCChHHHHHhhhcCCC
Q psy12224 7 TPLKPSGASEASIKKAYRKQSLILHPDKETG---DEKAFMKLTKAYQALTDEESRRNFEKYGNP 67 (904)
Q Consensus 7 ILGV~~~As~~eIKkAYRkLSlkyHPDKnp~---~ee~F~kI~kAYevLtDp~~R~~YD~yG~p 67 (904)
||||+++||.+|||+|||+||++||||+|++ ++++|++|++||++|+|+.+|..||+||..
T Consensus 10 ~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~ 73 (386)
T PRK14277 10 ILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHA 73 (386)
T ss_pred hcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhccc
Confidence 9999999999999999999999999999864 357999999999999999999999999964
No 32
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.43 E-value=1.5e-13 Score=154.89 Aligned_cols=68 Identities=35% Similarity=0.640 Sum_probs=61.0
Q ss_pred CCCCCC--ccCCCCCCCHHHHHHHHHHHHhhcCCCCCCc---hHHHHHHHHHHHHHcCChHHHHHhhhcCCCC
Q psy12224 1 MSGKSR--TPLKPSGASEASIKKAYRKQSLILHPDKETG---DEKAFMKLTKAYQALTDEESRRNFEKYGNPD 68 (904)
Q Consensus 1 m~g~~~--ILGV~~~As~~eIKkAYRkLSlkyHPDKnp~---~ee~F~kI~kAYevLtDp~~R~~YD~yG~pd 68 (904)
|+..+| ||||+++||..+||+|||+||++||||+|++ ++++|.+|++||++|+|+.+|..||+||...
T Consensus 1 ~~~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~ 73 (371)
T PRK10767 1 MAKRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAA 73 (371)
T ss_pred CCCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhccccc
Confidence 564544 9999999999999999999999999999864 3479999999999999999999999999753
No 33
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.43 E-value=1.5e-13 Score=155.68 Aligned_cols=61 Identities=33% Similarity=0.578 Sum_probs=57.9
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhcCCCCCCc--hHHHHHHHHHHHHHcCChHHHHHhhhcCCC
Q psy12224 7 TPLKPSGASEASIKKAYRKQSLILHPDKETG--DEKAFMKLTKAYQALTDEESRRNFEKYGNP 67 (904)
Q Consensus 7 ILGV~~~As~~eIKkAYRkLSlkyHPDKnp~--~ee~F~kI~kAYevLtDp~~R~~YD~yG~p 67 (904)
||||+++||.++||+|||+||++||||+|++ ++++|++|++||++|+||.+|+.||+||..
T Consensus 8 ~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~ 70 (382)
T PRK14291 8 ILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFGHA 70 (382)
T ss_pred hhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhccc
Confidence 9999999999999999999999999999954 568999999999999999999999999974
No 34
>KOG0716|consensus
Probab=99.41 E-value=1.9e-13 Score=144.91 Aligned_cols=60 Identities=37% Similarity=0.625 Sum_probs=57.0
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhcCCCCCCch---HHHHHHHHHHHHHcCChHHHHHhhhcCC
Q psy12224 7 TPLKPSGASEASIKKAYRKQSLILHPDKETGD---EKAFMKLTKAYQALTDEESRRNFEKYGN 66 (904)
Q Consensus 7 ILGV~~~As~~eIKkAYRkLSlkyHPDKnp~~---ee~F~kI~kAYevLtDp~~R~~YD~yG~ 66 (904)
|||++++|+..+||||||+|+++||||+++++ .++|..||+||.+|+|+.+|..||+||.
T Consensus 36 VLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~ 98 (279)
T KOG0716|consen 36 VLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGE 98 (279)
T ss_pred HhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhh
Confidence 99999999999999999999999999998664 5799999999999999999999999985
No 35
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.40 E-value=3.4e-13 Score=114.69 Aligned_cols=56 Identities=45% Similarity=0.748 Sum_probs=53.5
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhcCCCCCCchH----HHHHHHHHHHHHcCChHHHHHhh
Q psy12224 7 TPLKPSGASEASIKKAYRKQSLILHPDKETGDE----KAFMKLTKAYQALTDEESRRNFE 62 (904)
Q Consensus 7 ILGV~~~As~~eIKkAYRkLSlkyHPDKnp~~e----e~F~kI~kAYevLtDp~~R~~YD 62 (904)
||||+++|+..+||++||+++++||||++++.. +.|..|++||++|+||.+|+.||
T Consensus 5 iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 5 ILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred HCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 899999999999999999999999999986655 79999999999999999999998
No 36
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.40 E-value=2.5e-13 Score=154.53 Aligned_cols=61 Identities=34% Similarity=0.657 Sum_probs=57.7
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhcCCCCCCc---hHHHHHHHHHHHHHcCChHHHHHhhhcCCC
Q psy12224 7 TPLKPSGASEASIKKAYRKQSLILHPDKETG---DEKAFMKLTKAYQALTDEESRRNFEKYGNP 67 (904)
Q Consensus 7 ILGV~~~As~~eIKkAYRkLSlkyHPDKnp~---~ee~F~kI~kAYevLtDp~~R~~YD~yG~p 67 (904)
||||+++||..+||+|||+||++||||++++ ++++|++|++||++|+|+.+|..||+||..
T Consensus 8 iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~ 71 (397)
T PRK14281 8 VLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHA 71 (397)
T ss_pred hcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccch
Confidence 9999999999999999999999999999864 357999999999999999999999999974
No 37
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.40 E-value=2.7e-13 Score=153.78 Aligned_cols=61 Identities=41% Similarity=0.720 Sum_probs=57.3
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhcCCCCCCc---hHHHHHHHHHHHHHcCChHHHHHhhh----cCCC
Q psy12224 7 TPLKPSGASEASIKKAYRKQSLILHPDKETG---DEKAFMKLTKAYQALTDEESRRNFEK----YGNP 67 (904)
Q Consensus 7 ILGV~~~As~~eIKkAYRkLSlkyHPDKnp~---~ee~F~kI~kAYevLtDp~~R~~YD~----yG~p 67 (904)
||||+++||..|||+|||+||++||||+|++ ++++|++|++||++|+||.+|+.||+ ||..
T Consensus 14 ~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~ 81 (389)
T PRK14295 14 VLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNG 81 (389)
T ss_pred hcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhccc
Confidence 9999999999999999999999999999864 45899999999999999999999999 8864
No 38
>KOG0691|consensus
Probab=99.40 E-value=2.8e-13 Score=147.54 Aligned_cols=61 Identities=44% Similarity=0.697 Sum_probs=58.3
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhcCCCCCCchH---HHHHHHHHHHHHcCChHHHHHhhhcCCC
Q psy12224 7 TPLKPSGASEASIKKAYRKQSLILHPDKETGDE---KAFMKLTKAYQALTDEESRRNFEKYGNP 67 (904)
Q Consensus 7 ILGV~~~As~~eIKkAYRkLSlkyHPDKnp~~e---e~F~kI~kAYevLtDp~~R~~YD~yG~p 67 (904)
||||+.+||.++|++|||+.+++|||||||+++ ++|+.|.+||+||+|+..|..||++|..
T Consensus 10 lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~ 73 (296)
T KOG0691|consen 10 LLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKS 73 (296)
T ss_pred HhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhh
Confidence 999999999999999999999999999998875 7899999999999999999999999864
No 39
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.39 E-value=3.4e-13 Score=153.14 Aligned_cols=61 Identities=39% Similarity=0.676 Sum_probs=57.7
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhcCCCCCCc---hHHHHHHHHHHHHHcCChHHHHHhhhcCCC
Q psy12224 7 TPLKPSGASEASIKKAYRKQSLILHPDKETG---DEKAFMKLTKAYQALTDEESRRNFEKYGNP 67 (904)
Q Consensus 7 ILGV~~~As~~eIKkAYRkLSlkyHPDKnp~---~ee~F~kI~kAYevLtDp~~R~~YD~yG~p 67 (904)
||||+++||.+|||+|||+||++||||+|++ ++++|++|++||++|+|+.+|+.||+||..
T Consensus 6 iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~ 69 (391)
T PRK14284 6 ILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKD 69 (391)
T ss_pred hcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhcccc
Confidence 9999999999999999999999999999974 357999999999999999999999999974
No 40
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.39 E-value=4.5e-13 Score=160.91 Aligned_cols=62 Identities=26% Similarity=0.356 Sum_probs=58.3
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhcCCCCCCch--HHHHHHHHHHHHHcCChHHHHHhhhcCCCC
Q psy12224 7 TPLKPSGASEASIKKAYRKQSLILHPDKETGD--EKAFMKLTKAYQALTDEESRRNFEKYGNPD 68 (904)
Q Consensus 7 ILGV~~~As~~eIKkAYRkLSlkyHPDKnp~~--ee~F~kI~kAYevLtDp~~R~~YD~yG~pd 68 (904)
||||+++||..+||+|||+||++|||||++++ .++|++|++||++|+||.+|+.||+||..+
T Consensus 578 ILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~G 641 (1136)
T PTZ00341 578 ILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYDG 641 (1136)
T ss_pred HcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhccccc
Confidence 99999999999999999999999999999754 478999999999999999999999999764
No 41
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.38 E-value=3.9e-13 Score=151.44 Aligned_cols=61 Identities=33% Similarity=0.556 Sum_probs=57.5
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhcCCCCCCc----hHHHHHHHHHHHHHcCChHHHHHhhhcCCC
Q psy12224 7 TPLKPSGASEASIKKAYRKQSLILHPDKETG----DEKAFMKLTKAYQALTDEESRRNFEKYGNP 67 (904)
Q Consensus 7 ILGV~~~As~~eIKkAYRkLSlkyHPDKnp~----~ee~F~kI~kAYevLtDp~~R~~YD~yG~p 67 (904)
||||+++||.+|||+|||+|+++||||++++ ++++|++|++||++|+|+.+|..||+||..
T Consensus 8 vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~ 72 (365)
T PRK14290 8 ILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTV 72 (365)
T ss_pred hcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCc
Confidence 9999999999999999999999999999864 347999999999999999999999999974
No 42
>KOG0717|consensus
Probab=99.37 E-value=3.2e-13 Score=151.20 Aligned_cols=60 Identities=30% Similarity=0.464 Sum_probs=56.0
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhcCCCCCCch----HHHHHHHHHHHHHcCChHHHHHhhhcCC
Q psy12224 7 TPLKPSGASEASIKKAYRKQSLILHPDKETGD----EKAFMKLTKAYQALTDEESRRNFEKYGN 66 (904)
Q Consensus 7 ILGV~~~As~~eIKkAYRkLSlkyHPDKnp~~----ee~F~kI~kAYevLtDp~~R~~YD~yG~ 66 (904)
||||.++|+..+||++||+|||+|||||||.. .++|+.|+.||+||+||..|.|||.+..
T Consensus 13 ~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hre 76 (508)
T KOG0717|consen 13 VLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHRE 76 (508)
T ss_pred HhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHH
Confidence 99999999999999999999999999998653 4789999999999999999999998754
No 43
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.37 E-value=5.6e-13 Score=146.81 Aligned_cols=66 Identities=26% Similarity=0.377 Sum_probs=60.3
Q ss_pred CCCCCC--ccCCCCCCCHHHHHHHHHHHHhhcCCCCCC--chHHHHHHHHHHHHHcCChHHHHHhhhcCC
Q psy12224 1 MSGKSR--TPLKPSGASEASIKKAYRKQSLILHPDKET--GDEKAFMKLTKAYQALTDEESRRNFEKYGN 66 (904)
Q Consensus 1 m~g~~~--ILGV~~~As~~eIKkAYRkLSlkyHPDKnp--~~ee~F~kI~kAYevLtDp~~R~~YD~yG~ 66 (904)
|+.+.| ||||+++||.++||+|||+|+++||||+|+ .++++|++|++||++|+|+.+|..||.||.
T Consensus 1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~ 70 (306)
T PRK10266 1 MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQ 70 (306)
T ss_pred CCcCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence 665555 999999999999999999999999999984 357899999999999999999999999984
No 44
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.37 E-value=5.4e-13 Score=150.61 Aligned_cols=61 Identities=34% Similarity=0.558 Sum_probs=57.5
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhcCCCCCCc--hHHHHHHHHHHHHHcCChHHHHHhhhcCCC
Q psy12224 7 TPLKPSGASEASIKKAYRKQSLILHPDKETG--DEKAFMKLTKAYQALTDEESRRNFEKYGNP 67 (904)
Q Consensus 7 ILGV~~~As~~eIKkAYRkLSlkyHPDKnp~--~ee~F~kI~kAYevLtDp~~R~~YD~yG~p 67 (904)
||||+++||..|||+|||+|+++||||+++. ++++|++|++||++|+|+.+|..||+||..
T Consensus 8 iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~ 70 (372)
T PRK14300 8 ILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHD 70 (372)
T ss_pred HcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhcccc
Confidence 9999999999999999999999999999853 467999999999999999999999999964
No 45
>KOG0715|consensus
Probab=99.36 E-value=8.1e-13 Score=144.35 Aligned_cols=61 Identities=33% Similarity=0.531 Sum_probs=57.4
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhcCCCCCC--chHHHHHHHHHHHHHcCChHHHHHhhhcCCC
Q psy12224 7 TPLKPSGASEASIKKAYRKQSLILHPDKET--GDEKAFMKLTKAYQALTDEESRRNFEKYGNP 67 (904)
Q Consensus 7 ILGV~~~As~~eIKkAYRkLSlkyHPDKnp--~~ee~F~kI~kAYevLtDp~~R~~YD~yG~p 67 (904)
||||+++||..|||+||++||++||||.|. .+.++|++|.+||++|+|+++|..||.+|..
T Consensus 48 vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~ 110 (288)
T KOG0715|consen 48 VLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLE 110 (288)
T ss_pred hhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhh
Confidence 999999999999999999999999999985 4568999999999999999999999999864
No 46
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.35 E-value=8.4e-13 Score=149.74 Aligned_cols=61 Identities=34% Similarity=0.637 Sum_probs=57.5
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhcCCCCCCc---hHHHHHHHHHHHHHcCChHHHHHhhhcCCC
Q psy12224 7 TPLKPSGASEASIKKAYRKQSLILHPDKETG---DEKAFMKLTKAYQALTDEESRRNFEKYGNP 67 (904)
Q Consensus 7 ILGV~~~As~~eIKkAYRkLSlkyHPDKnp~---~ee~F~kI~kAYevLtDp~~R~~YD~yG~p 67 (904)
||||+++||.+|||+|||+||++||||+|++ ++++|++|++||++|+|+.+|..||+||..
T Consensus 10 ~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~ 73 (386)
T PRK14289 10 VLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHA 73 (386)
T ss_pred HcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhccc
Confidence 9999999999999999999999999999964 357899999999999999999999999864
No 47
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.34 E-value=1.2e-12 Score=147.93 Aligned_cols=61 Identities=28% Similarity=0.563 Sum_probs=57.8
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhcCCCCCCc--hHHHHHHHHHHHHHcCChHHHHHhhhcCCC
Q psy12224 7 TPLKPSGASEASIKKAYRKQSLILHPDKETG--DEKAFMKLTKAYQALTDEESRRNFEKYGNP 67 (904)
Q Consensus 7 ILGV~~~As~~eIKkAYRkLSlkyHPDKnp~--~ee~F~kI~kAYevLtDp~~R~~YD~yG~p 67 (904)
||||+++||..+||+|||+|+++||||+|+. ++++|..|++||++|+||.+|+.||.||..
T Consensus 8 vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~ 70 (374)
T PRK14293 8 ILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFGEA 70 (374)
T ss_pred hcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhcccc
Confidence 9999999999999999999999999999853 578999999999999999999999999975
No 48
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.34 E-value=9.7e-13 Score=148.48 Aligned_cols=65 Identities=31% Similarity=0.527 Sum_probs=59.5
Q ss_pred CCCccCCCCCCCHHHHHHHHHHHHhhcCCCCCCc--hHHHHHHHHHHHHHcCChHHHHHhhhcCCCC
Q psy12224 4 KSRTPLKPSGASEASIKKAYRKQSLILHPDKETG--DEKAFMKLTKAYQALTDEESRRNFEKYGNPD 68 (904)
Q Consensus 4 ~~~ILGV~~~As~~eIKkAYRkLSlkyHPDKnp~--~ee~F~kI~kAYevLtDp~~R~~YD~yG~pd 68 (904)
.+.||||+++||.++||+|||+|+++||||+++. ++++|..|++||++|+||.+|+.||+||...
T Consensus 4 ~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~ 70 (371)
T PRK14292 4 YYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAP 70 (371)
T ss_pred hHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcc
Confidence 3349999999999999999999999999999964 4689999999999999999999999999753
No 49
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.33 E-value=1.4e-12 Score=146.22 Aligned_cols=62 Identities=35% Similarity=0.609 Sum_probs=58.1
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhcCCCCCC--chHHHHHHHHHHHHHcCChHHHHHhhhcCCCC
Q psy12224 7 TPLKPSGASEASIKKAYRKQSLILHPDKET--GDEKAFMKLTKAYQALTDEESRRNFEKYGNPD 68 (904)
Q Consensus 7 ILGV~~~As~~eIKkAYRkLSlkyHPDKnp--~~ee~F~kI~kAYevLtDp~~R~~YD~yG~pd 68 (904)
||||+++||.++||+|||+||++||||+++ .++++|++|++||++|+|+.+|..||.||...
T Consensus 5 ~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~ 68 (354)
T TIGR02349 5 ILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAG 68 (354)
T ss_pred hCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhccccc
Confidence 999999999999999999999999999985 35689999999999999999999999999753
No 50
>KOG0719|consensus
Probab=99.32 E-value=1.2e-12 Score=136.02 Aligned_cols=62 Identities=40% Similarity=0.597 Sum_probs=57.5
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhcCCCCCCc-----hHHHHHHHHHHHHHcCChHHHHHhhhcCCCC
Q psy12224 7 TPLKPSGASEASIKKAYRKQSLILHPDKETG-----DEKAFMKLTKAYQALTDEESRRNFEKYGNPD 68 (904)
Q Consensus 7 ILGV~~~As~~eIKkAYRkLSlkyHPDKnp~-----~ee~F~kI~kAYevLtDp~~R~~YD~yG~pd 68 (904)
||||.++||.++||+|||+|||+||||+++. +.++|++|++||+||+|+++|+.||+.|.-+
T Consensus 19 vLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~id 85 (264)
T KOG0719|consen 19 VLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSID 85 (264)
T ss_pred HhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCC
Confidence 9999999999999999999999999999842 2368999999999999999999999998765
No 51
>PHA03102 Small T antigen; Reviewed
Probab=99.32 E-value=1.9e-12 Score=129.14 Aligned_cols=63 Identities=24% Similarity=0.325 Sum_probs=58.7
Q ss_pred ccCCCCCC--CHHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHcCChHHHHHhhhcCCCCCC
Q psy12224 7 TPLKPSGA--SEASIKKAYRKQSLILHPDKETGDEKAFMKLTKAYQALTDEESRRNFEKYGNPDGP 70 (904)
Q Consensus 7 ILGV~~~A--s~~eIKkAYRkLSlkyHPDKnp~~ee~F~kI~kAYevLtDp~~R~~YD~yG~pdg~ 70 (904)
||||+++| |..+||+|||++++++||||+ +++++|++|++||++|+|+.+|..||.+|.....
T Consensus 10 vLGl~~~A~~s~~eIKkAYr~la~~~HPDkg-g~~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~~ 74 (153)
T PHA03102 10 LLGLPRSAWGNLPLMRKAYLRKCLEFHPDKG-GDEEKMKELNTLYKKFRESVKSLRDLDGEEDSSS 74 (153)
T ss_pred HcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC-chhHHHHHHHHHHHHHhhHHHhccccccCCcccc
Confidence 89999999 999999999999999999997 6688999999999999999999999999865443
No 52
>KOG0718|consensus
Probab=99.30 E-value=2.1e-12 Score=144.72 Aligned_cols=64 Identities=36% Similarity=0.644 Sum_probs=58.9
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhcCCCCCCc------hHHHHHHHHHHHHHcCChHHHHHhhhcCCCCCC
Q psy12224 7 TPLKPSGASEASIKKAYRKQSLILHPDKETG------DEKAFMKLTKAYQALTDEESRRNFEKYGNPDGP 70 (904)
Q Consensus 7 ILGV~~~As~~eIKkAYRkLSlkyHPDKnp~------~ee~F~kI~kAYevLtDp~~R~~YD~yG~pdg~ 70 (904)
+|||+++||.+|||+|||++|+-|||||..+ +++.|++|..||+||+||.+|..||.||..+..
T Consensus 14 ~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~ 83 (546)
T KOG0718|consen 14 LLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLK 83 (546)
T ss_pred HhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccc
Confidence 9999999999999999999999999999742 357899999999999999999999999987654
No 53
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.16 E-value=4.7e-11 Score=98.04 Aligned_cols=48 Identities=44% Similarity=0.672 Sum_probs=45.6
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhcCCCCCCc---hHHHHHHHHHHHHHcCC
Q psy12224 7 TPLKPSGASEASIKKAYRKQSLILHPDKETG---DEKAFMKLTKAYQALTD 54 (904)
Q Consensus 7 ILGV~~~As~~eIKkAYRkLSlkyHPDKnp~---~ee~F~kI~kAYevLtD 54 (904)
||||+++++..+||++||+|+++||||++++ ..+.|.+|++||++|+|
T Consensus 5 vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 5 ILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred HcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999975 56899999999999987
No 54
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.16 E-value=4e-11 Score=100.29 Aligned_cols=50 Identities=46% Similarity=0.666 Sum_probs=46.9
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhcCCCCCCc----hHHHHHHHHHHHHHcCChH
Q psy12224 7 TPLKPSGASEASIKKAYRKQSLILHPDKETG----DEKAFMKLTKAYQALTDEE 56 (904)
Q Consensus 7 ILGV~~~As~~eIKkAYRkLSlkyHPDKnp~----~ee~F~kI~kAYevLtDp~ 56 (904)
||||+++++..+||+|||+|+++||||++++ ..+.|..|++||++|+||.
T Consensus 6 vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 6 ILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred HcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999874 4679999999999999984
No 55
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=4.3e-11 Score=121.35 Aligned_cols=59 Identities=44% Similarity=0.714 Sum_probs=55.9
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhcCCCCCCch----HHHHHHHHHHHHHcCChHHHHHhhhcC
Q psy12224 7 TPLKPSGASEASIKKAYRKQSLILHPDKETGD----EKAFMKLTKAYQALTDEESRRNFEKYG 65 (904)
Q Consensus 7 ILGV~~~As~~eIKkAYRkLSlkyHPDKnp~~----ee~F~kI~kAYevLtDp~~R~~YD~yG 65 (904)
||||+++|+..+||+|||+++++||||+++++ ++.|..|++||++|+|+..|..||+++
T Consensus 11 iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~ 73 (237)
T COG2214 11 ILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG 73 (237)
T ss_pred HhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence 99999999999999999999999999999764 389999999999999999999999974
No 56
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.15 E-value=5.5e-11 Score=140.65 Aligned_cols=62 Identities=31% Similarity=0.516 Sum_probs=57.6
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhcCCCCCCc--hHHHHHHHHHHHHHcCChHHHHHhhhcCCCC
Q psy12224 7 TPLKPSGASEASIKKAYRKQSLILHPDKETG--DEKAFMKLTKAYQALTDEESRRNFEKYGNPD 68 (904)
Q Consensus 7 ILGV~~~As~~eIKkAYRkLSlkyHPDKnp~--~ee~F~kI~kAYevLtDp~~R~~YD~yG~pd 68 (904)
||||+++|+..+||+|||+|+++||||++++ +..+|++|++||++|+|+.+|..||.||..+
T Consensus 7 VLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG 70 (871)
T TIGR03835 7 VLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKYGHDG 70 (871)
T ss_pred hcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhhcccc
Confidence 9999999999999999999999999999854 3468999999999999999999999999754
No 57
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=98.91 E-value=2.7e-09 Score=108.22 Aligned_cols=65 Identities=22% Similarity=0.224 Sum_probs=55.0
Q ss_pred CCCCCCccCCCCC--CCHHHHHHHHHHHHhhcCCCCCCchHH------HHHHHHHHHHHcCChHHHHHhhhcC
Q psy12224 1 MSGKSRTPLKPSG--ASEASIKKAYRKQSLILHPDKETGDEK------AFMKLTKAYQALTDEESRRNFEKYG 65 (904)
Q Consensus 1 m~g~~~ILGV~~~--As~~eIKkAYRkLSlkyHPDKnp~~ee------~F~kI~kAYevLtDp~~R~~YD~yG 65 (904)
|.....+|||+++ ++..+|+++||+|+++||||++....+ .|..|++||++|+||.+|..|..-.
T Consensus 1 ~~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l 73 (166)
T PRK01356 1 MQNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLL 73 (166)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHc
Confidence 3344449999997 789999999999999999999865432 4779999999999999999998654
No 58
>KOG0722|consensus
Probab=98.87 E-value=1.1e-09 Score=115.21 Aligned_cols=59 Identities=32% Similarity=0.482 Sum_probs=55.1
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhcCCCCCCchH--HHHHHHHHHHHHcCChHHHHHhhhcC
Q psy12224 7 TPLKPSGASEASIKKAYRKQSLILHPDKETGDE--KAFMKLTKAYQALTDEESRRNFEKYG 65 (904)
Q Consensus 7 ILGV~~~As~~eIKkAYRkLSlkyHPDKnp~~e--e~F~kI~kAYevLtDp~~R~~YD~yG 65 (904)
||||++.|+..+|.||||+||++||||++++.+ +.|+.|..||++|.|.+.|.+||-+.
T Consensus 38 VLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt~ydyal 98 (329)
T KOG0722|consen 38 VLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRTQYDYAL 98 (329)
T ss_pred HhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHHhHHHHh
Confidence 999999999999999999999999999986654 57999999999999999999999764
No 59
>KOG0624|consensus
Probab=98.85 E-value=2.6e-09 Score=116.89 Aligned_cols=64 Identities=36% Similarity=0.501 Sum_probs=56.7
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhcCCCCCCc------hHHHHHHHHHHHHHcCChHHHHHhhhcCCCCCC
Q psy12224 7 TPLKPSGASEASIKKAYRKQSLILHPDKETG------DEKAFMKLTKAYQALTDEESRRNFEKYGNPDGP 70 (904)
Q Consensus 7 ILGV~~~As~~eIKkAYRkLSlkyHPDKnp~------~ee~F~kI~kAYevLtDp~~R~~YD~yG~pdg~ 70 (904)
||||.++|+..||.||||||+.|||||--.+ ++.+|+.|..|-+||+||++|+.||.--.|-.+
T Consensus 399 ILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnGeDPLD~ 468 (504)
T KOG0624|consen 399 ILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNGEDPLDP 468 (504)
T ss_pred HhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCCCCCCCh
Confidence 9999999999999999999999999997532 346899999999999999999999986555444
No 60
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=98.85 E-value=4.6e-09 Score=107.20 Aligned_cols=63 Identities=19% Similarity=0.217 Sum_probs=55.3
Q ss_pred CCCCCC--ccCCCCC--CCHHHHHHHHHHHHhhcCCCCCCch--------HHHHHHHHHHHHHcCChHHHHHhhh
Q psy12224 1 MSGKSR--TPLKPSG--ASEASIKKAYRKQSLILHPDKETGD--------EKAFMKLTKAYQALTDEESRRNFEK 63 (904)
Q Consensus 1 m~g~~~--ILGV~~~--As~~eIKkAYRkLSlkyHPDKnp~~--------ee~F~kI~kAYevLtDp~~R~~YD~ 63 (904)
|.+.+| +||++++ .+..+|+++||+|+++||||++.+. .+.|..||+||++|+||.+|..|+-
T Consensus 1 ~~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL 75 (173)
T PRK00294 1 MGTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLL 75 (173)
T ss_pred CCCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence 566677 9999998 5579999999999999999997442 2479999999999999999999986
No 61
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=98.83 E-value=6.9e-09 Score=105.78 Aligned_cols=57 Identities=19% Similarity=0.241 Sum_probs=51.0
Q ss_pred ccCCCCC--CCHHHHHHHHHHHHhhcCCCCCCch--------HHHHHHHHHHHHHcCChHHHHHhhh
Q psy12224 7 TPLKPSG--ASEASIKKAYRKQSLILHPDKETGD--------EKAFMKLTKAYQALTDEESRRNFEK 63 (904)
Q Consensus 7 ILGV~~~--As~~eIKkAYRkLSlkyHPDKnp~~--------ee~F~kI~kAYevLtDp~~R~~YD~ 63 (904)
||||+++ ++..+|+++||+|+++||||+..+. .+.|..|++||++|+||.+|..|+-
T Consensus 6 llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll 72 (171)
T PRK05014 6 LFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLL 72 (171)
T ss_pred HCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHH
Confidence 9999996 6789999999999999999996432 2478999999999999999999985
No 62
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=98.82 E-value=4.6e-09 Score=100.38 Aligned_cols=46 Identities=26% Similarity=0.243 Sum_probs=43.9
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHcC
Q psy12224 7 TPLKPSGASEASIKKAYRKQSLILHPDKETGDEKAFMKLTKAYQALT 53 (904)
Q Consensus 7 ILGV~~~As~~eIKkAYRkLSlkyHPDKnp~~ee~F~kI~kAYevLt 53 (904)
||||+++||.+|||++||+|++++|||++ ++++.|.+|++||++|.
T Consensus 70 ILGv~~~As~~eIkkaYRrLa~~~HPDkg-Gs~~~~~kIneAyevL~ 115 (116)
T PTZ00100 70 ILNISPTASKERIREAHKQLMLRNHPDNG-GSTYIASKVNEAKDLLL 115 (116)
T ss_pred HcCCCCCCCHHHHHHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999996 77889999999999985
No 63
>KOG0714|consensus
Probab=98.78 E-value=4.4e-09 Score=111.94 Aligned_cols=63 Identities=40% Similarity=0.663 Sum_probs=57.6
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhcCCCCCCch----HHHHHHHHHHHHHcCChHHHHHhhhcCCCCCC
Q psy12224 7 TPLKPSGASEASIKKAYRKQSLILHPDKETGD----EKAFMKLTKAYQALTDEESRRNFEKYGNPDGP 70 (904)
Q Consensus 7 ILGV~~~As~~eIKkAYRkLSlkyHPDKnp~~----ee~F~kI~kAYevLtDp~~R~~YD~yG~pdg~ 70 (904)
||||.++|+..+|++|||+++++||||||+.. +++|.+|++||++|+|+.+|..||.||. .+.
T Consensus 8 ~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~-~~~ 74 (306)
T KOG0714|consen 8 ILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGE-EGL 74 (306)
T ss_pred HhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCc-ccc
Confidence 99999999999999999999999999998665 2479999999999999999999999997 443
No 64
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=98.76 E-value=2.1e-08 Score=102.67 Aligned_cols=57 Identities=28% Similarity=0.357 Sum_probs=50.4
Q ss_pred ccCCCCC--CCHHHHHHHHHHHHhhcCCCCCCch---H-----HHHHHHHHHHHHcCChHHHHHhhh
Q psy12224 7 TPLKPSG--ASEASIKKAYRKQSLILHPDKETGD---E-----KAFMKLTKAYQALTDEESRRNFEK 63 (904)
Q Consensus 7 ILGV~~~--As~~eIKkAYRkLSlkyHPDKnp~~---e-----e~F~kI~kAYevLtDp~~R~~YD~ 63 (904)
||||+++ ++..+|+++||+|+++||||++++. + +.+..||+||++|+||.+|..|.-
T Consensus 11 llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll 77 (176)
T PRK03578 11 LFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLL 77 (176)
T ss_pred HcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHH
Confidence 9999996 6799999999999999999997532 2 346899999999999999999995
No 65
>PHA02624 large T antigen; Provisional
Probab=98.75 E-value=8.7e-09 Score=121.21 Aligned_cols=55 Identities=27% Similarity=0.389 Sum_probs=52.8
Q ss_pred ccCCCCCC--CHHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHcCChHHHHHhh
Q psy12224 7 TPLKPSGA--SEASIKKAYRKQSLILHPDKETGDEKAFMKLTKAYQALTDEESRRNFE 62 (904)
Q Consensus 7 ILGV~~~A--s~~eIKkAYRkLSlkyHPDKnp~~ee~F~kI~kAYevLtDp~~R~~YD 62 (904)
+|||+++| +..+||+|||++|++|||||+ +++++|++|+.||++|+|+.+|..|.
T Consensus 16 lLGL~~~A~gs~~eIKkAYRkLAkkyHPDKg-Gdeekfk~Ln~AYevL~d~~k~~r~~ 72 (647)
T PHA02624 16 LLGLPMAAWGNLPLMRKAYLRKCKEYHPDKG-GDEEKMKRLNSLYKKLQEGVKSARQS 72 (647)
T ss_pred HcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC-CcHHHHHHHHHHHHHHhcHHHhhhcc
Confidence 99999999 999999999999999999997 77899999999999999999999993
No 66
>KOG0550|consensus
Probab=98.61 E-value=4.4e-08 Score=109.68 Aligned_cols=57 Identities=40% Similarity=0.604 Sum_probs=54.3
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhcCCCCCCch----HHHHHHHHHHHHHcCChHHHHHhhh
Q psy12224 7 TPLKPSGASEASIKKAYRKQSLILHPDKETGD----EKAFMKLTKAYQALTDEESRRNFEK 63 (904)
Q Consensus 7 ILGV~~~As~~eIKkAYRkLSlkyHPDKnp~~----ee~F~kI~kAYevLtDp~~R~~YD~ 63 (904)
||||+++|+..|||+|||++++.||||++.++ +.+|+.+.+||.+|+|+.+|..||.
T Consensus 378 ilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~ds 438 (486)
T KOG0550|consen 378 ILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDS 438 (486)
T ss_pred HhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhccc
Confidence 99999999999999999999999999998665 5689999999999999999999997
No 67
>KOG0720|consensus
Probab=98.59 E-value=4.3e-08 Score=110.76 Aligned_cols=58 Identities=36% Similarity=0.630 Sum_probs=55.2
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhcCCCCC--CchHHHHHHHHHHHHHcCChHHHHHhhhc
Q psy12224 7 TPLKPSGASEASIKKAYRKQSLILHPDKE--TGDEKAFMKLTKAYQALTDEESRRNFEKY 64 (904)
Q Consensus 7 ILGV~~~As~~eIKkAYRkLSlkyHPDKn--p~~ee~F~kI~kAYevLtDp~~R~~YD~y 64 (904)
+|||+++++..+|||+||++|.--||||| +.+++.|..|+.||++|+|+++|..||.-
T Consensus 240 vlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e 299 (490)
T KOG0720|consen 240 ALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLE 299 (490)
T ss_pred hcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHH
Confidence 99999999999999999999999999998 55679999999999999999999999973
No 68
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.49 E-value=3.1e-07 Score=92.55 Aligned_cols=53 Identities=23% Similarity=0.275 Sum_probs=45.6
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCCc--------hHHHHHHHHHHHHHcCChHHHHHhhhcCC
Q psy12224 14 ASEASIKKAYRKQSLILHPDKETG--------DEKAFMKLTKAYQALTDEESRRNFEKYGN 66 (904)
Q Consensus 14 As~~eIKkAYRkLSlkyHPDKnp~--------~ee~F~kI~kAYevLtDp~~R~~YD~yG~ 66 (904)
.+..+|+++||+|+++||||+.++ +...|..||+||++|+||.+|..|.--.+
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~ 63 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLH 63 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence 467899999999999999999532 23579999999999999999999997544
No 69
>KOG1150|consensus
Probab=98.21 E-value=1.9e-06 Score=88.59 Aligned_cols=61 Identities=34% Similarity=0.551 Sum_probs=55.2
Q ss_pred CCCC-------ccCCCCCCCHHHHHHHHHHHHhhcCCCCCCchH----HHHHHHHHHHHHcCChHHHHHhhh
Q psy12224 3 GKSR-------TPLKPSGASEASIKKAYRKQSLILHPDKETGDE----KAFMKLTKAYQALTDEESRRNFEK 63 (904)
Q Consensus 3 g~~~-------ILGV~~~As~~eIKkAYRkLSlkyHPDKnp~~e----e~F~kI~kAYevLtDp~~R~~YD~ 63 (904)
|++| ||.|.+..+..+||+.||+||+-.|||||+++. ..|--+.+||+.|-|+..|...+.
T Consensus 47 gstyfnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~~~ 118 (250)
T KOG1150|consen 47 GSTYFNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRCLD 118 (250)
T ss_pred CccccccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 7777 999999999999999999999999999998873 479999999999999998876654
No 70
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=98.02 E-value=7.5e-06 Score=83.89 Aligned_cols=60 Identities=20% Similarity=0.121 Sum_probs=51.1
Q ss_pred CCCccCCCCC--CCHHHHHHHHHHHHhhcCCCCCCch--------HHHHHHHHHHHHHcCChHHHHHhhh
Q psy12224 4 KSRTPLKPSG--ASEASIKKAYRKQSLILHPDKETGD--------EKAFMKLTKAYQALTDEESRRNFEK 63 (904)
Q Consensus 4 ~~~ILGV~~~--As~~eIKkAYRkLSlkyHPDKnp~~--------ee~F~kI~kAYevLtDp~~R~~YD~ 63 (904)
.-.+||+++. .+...++++||.|.+++|||+..+. .+.-..||+||.+|+||.+|..|--
T Consensus 4 yF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL 73 (173)
T PRK01773 4 PFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAII 73 (173)
T ss_pred hHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHH
Confidence 3349999998 8899999999999999999996322 1356899999999999999999965
No 71
>KOG1789|consensus
Probab=97.97 E-value=6.1e-06 Score=99.81 Aligned_cols=51 Identities=27% Similarity=0.413 Sum_probs=44.7
Q ss_pred ccCCCCC----CCHHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHcCChHH
Q psy12224 7 TPLKPSG----ASEASIKKAYRKQSLILHPDKETGDEKAFMKLTKAYQALTDEES 57 (904)
Q Consensus 7 ILGV~~~----As~~eIKkAYRkLSlkyHPDKnp~~ee~F~kI~kAYevLtDp~~ 57 (904)
||.|+.+ -....||++|+||+.+|||||||+.-++|.+++|||+.|.....
T Consensus 1286 iL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPEGRemFe~VnKAYE~L~~~ta 1340 (2235)
T KOG1789|consen 1286 ILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPEGREMFERVNKAYELLSSETA 1340 (2235)
T ss_pred HhccccCCCCcccHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHh
Confidence 7887765 23488999999999999999999999999999999999986544
No 72
>KOG0951|consensus
Probab=97.84 E-value=1.2e-05 Score=99.57 Aligned_cols=46 Identities=43% Similarity=0.774 Sum_probs=41.9
Q ss_pred eeecceeEEEEEEEcCCCCceeEEEEEEEcCCCccccceEEEEEEee
Q psy12224 583 TELVDQEQVQLKFTAPRWPGVYTFSVCLRCDSYLGFDQMQDIKLDVK 629 (904)
Q Consensus 583 t~L~~~~ev~LkF~AP~~pG~y~ytv~v~SDSYlG~Dq~~dikl~V~ 629 (904)
.+|.....++|.|++|. ||...|+||.+|||||||||++++.++|+
T Consensus 1629 ~~l~~k~~~kleF~~P~-~G~~~ytl~~~cDSYlg~DqE~sf~~~vk 1674 (1674)
T KOG0951|consen 1629 LTLNRKAQVKLEFTVPT-PGEKSYTLYFMCDSYLGCDQEYSFEVDVK 1674 (1674)
T ss_pred hccccceeEEEEecCCC-CCccceEEEEEeccccCccceeeEEeccC
Confidence 34566788999999996 99999999999999999999999999985
No 73
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=2.4e-05 Score=83.65 Aligned_cols=58 Identities=28% Similarity=0.316 Sum_probs=52.0
Q ss_pred ccCCCC---CCCHHHHHHHHHHHHhhcCCCCC-----CchHHHHHHHHHHHHHcCChHHHHHhhhc
Q psy12224 7 TPLKPS---GASEASIKKAYRKQSLILHPDKE-----TGDEKAFMKLTKAYQALTDEESRRNFEKY 64 (904)
Q Consensus 7 ILGV~~---~As~~eIKkAYRkLSlkyHPDKn-----p~~ee~F~kI~kAYevLtDp~~R~~YD~y 64 (904)
+||++. -|+..+|.+|.++...+||||+. .++.+.|..|++||++|+|+.+|..||..
T Consensus 48 ~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~ 113 (379)
T COG5269 48 LLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSN 113 (379)
T ss_pred HhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhcccc
Confidence 788876 48889999999999999999996 45578899999999999999999999973
No 74
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=97.49 E-value=8.8e-05 Score=81.00 Aligned_cols=29 Identities=34% Similarity=0.375 Sum_probs=28.5
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhcCCCCC
Q psy12224 7 TPLKPSGASEASIKKAYRKQSLILHPDKE 35 (904)
Q Consensus 7 ILGV~~~As~~eIKkAYRkLSlkyHPDKn 35 (904)
||||+++||.++||+|||+|+++|||||+
T Consensus 205 vLgv~~~as~~eIk~aYr~L~~~~HPDk~ 233 (267)
T PRK09430 205 VLGVSESDDDQEIKRAYRKLMSEHHPDKL 233 (267)
T ss_pred HcCCCCCCCHHHHHHHHHHHHHHhCcCCC
Confidence 99999999999999999999999999996
No 75
>KOG0723|consensus
Probab=97.23 E-value=0.00044 Score=65.10 Aligned_cols=48 Identities=25% Similarity=0.255 Sum_probs=44.4
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHcCCh
Q psy12224 7 TPLKPSGASEASIKKAYRKQSLILHPDKETGDEKAFMKLTKAYQALTDE 55 (904)
Q Consensus 7 ILGV~~~As~~eIKkAYRkLSlkyHPDKnp~~ee~F~kI~kAYevLtDp 55 (904)
||||+++++.+.||.|+|+..+-.|||+. +.+-.=.+|++|+++|...
T Consensus 61 IL~v~~s~~k~KikeaHrriM~~NHPD~G-GSPYlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 61 ILGVTPSLDKDKIKEAHRRIMLANHPDRG-GSPYLASKINEAKDLLEGT 108 (112)
T ss_pred HhCCCccccHHHHHHHHHHHHHcCCCcCC-CCHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999997 7777778999999999743
No 76
>KOG0568|consensus
Probab=97.01 E-value=0.00082 Score=70.81 Aligned_cols=48 Identities=21% Similarity=0.467 Sum_probs=43.5
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhcCCCCCC--chHHHHHHHHHHHH-HcCC
Q psy12224 7 TPLKPSGASEASIKKAYRKQSLILHPDKET--GDEKAFMKLTKAYQ-ALTD 54 (904)
Q Consensus 7 ILGV~~~As~~eIKkAYRkLSlkyHPDKnp--~~ee~F~kI~kAYe-vLtD 54 (904)
||||..+|+..+++.||.+|++++|||.+. .+.+.|++|.+||. ||..
T Consensus 52 il~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~ 102 (342)
T KOG0568|consen 52 ILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQE 102 (342)
T ss_pred HhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999963 35689999999998 7763
No 77
>KOG3192|consensus
Probab=91.39 E-value=0.28 Score=49.64 Aligned_cols=54 Identities=26% Similarity=0.363 Sum_probs=41.7
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCC--C------chHHHHHHHHHHHHHcCChHHHHHhhh
Q psy12224 10 KPSGASEASIKKAYRKQSLILHPDKE--T------GDEKAFMKLTKAYQALTDEESRRNFEK 63 (904)
Q Consensus 10 V~~~As~~eIKkAYRkLSlkyHPDKn--p------~~ee~F~kI~kAYevLtDp~~R~~YD~ 63 (904)
++.-..+..++--|.-.++++|||+. + .+.+.-.++++||.+|+||-+|..|-.
T Consensus 18 ~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yil 79 (168)
T KOG3192|consen 18 LSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLL 79 (168)
T ss_pred cCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33344555566689999999999994 1 124678999999999999999999953
No 78
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=87.17 E-value=0.66 Score=53.81 Aligned_cols=10 Identities=20% Similarity=0.265 Sum_probs=5.3
Q ss_pred ccceeecccC
Q psy12224 679 QLMLYLRPAA 688 (904)
Q Consensus 679 ~~~~~~~~~~ 688 (904)
-.|.+..|.+
T Consensus 120 sd~~~WtP~~ 129 (458)
T PF10446_consen 120 SDYEFWTPGA 129 (458)
T ss_pred ccceeecccc
Confidence 3455555654
No 79
>KOG0431|consensus
Probab=85.47 E-value=0.89 Score=53.66 Aligned_cols=36 Identities=42% Similarity=0.544 Sum_probs=26.9
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCCch----HH--HHHHHHHHH
Q psy12224 14 ASEASIKKAYRKQSLILHPDKETGD----EK--AFMKLTKAY 49 (904)
Q Consensus 14 As~~eIKkAYRkLSlkyHPDKnp~~----ee--~F~kI~kAY 49 (904)
.+.++|||||||..|..||||.++- .. .|.+|..|+
T Consensus 400 Vtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l 441 (453)
T KOG0431|consen 400 VTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDAL 441 (453)
T ss_pred cCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHH
Confidence 5789999999999999999997442 12 355555444
No 80
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=84.57 E-value=1.4 Score=43.54 Aligned_cols=50 Identities=22% Similarity=0.143 Sum_probs=37.5
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHcCChHH
Q psy12224 7 TPLKPSGASEASIKKAYRKQSLILHPDKETGDEKAFMKLTKAYQALTDEES 57 (904)
Q Consensus 7 ILGV~~~As~~eIKkAYRkLSlkyHPDKnp~~ee~F~kI~kAYevLtDp~~ 57 (904)
||||++.++.++|.+.|.+|-...+|+++ |..--=.+|..|.+.|-.+..
T Consensus 63 ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kG-GSfYLQSKV~rAKErl~~El~ 112 (127)
T PF03656_consen 63 ILNVKEELSREEIQKRYKHLFKANDPSKG-GSFYLQSKVFRAKERLEQELK 112 (127)
T ss_dssp HHT--G--SHHHHHHHHHHHHHHT-CCCT-S-HHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCCccCHHHHHHHHHHHHhccCCCcC-CCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999987 665555688888888875543
No 81
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=82.84 E-value=1.1 Score=46.26 Aligned_cols=48 Identities=25% Similarity=0.358 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHhhcCCCCCCc--hH------HHHHHHHHHHHHcCChHHHHHhhh
Q psy12224 16 EASIKKAYRKQSLILHPDKETG--DE------KAFMKLTKAYQALTDEESRRNFEK 63 (904)
Q Consensus 16 ~~eIKkAYRkLSlkyHPDKnp~--~e------e~F~kI~kAYevLtDp~~R~~YD~ 63 (904)
...++..|+.+.+.||||+... .. +.+..++.||.+|.|+-+|..|-.
T Consensus 17 ~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~l 72 (174)
T COG1076 17 LDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLL 72 (174)
T ss_pred HhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 3567889999999999999632 21 468999999999999999998843
No 82
>COG1204 Superfamily II helicase [General function prediction only]
Probab=82.84 E-value=1.1 Score=56.19 Aligned_cols=151 Identities=12% Similarity=0.033 Sum_probs=106.1
Q ss_pred ccccchhhhhhh-hcccCccccHHHHHHHHhcccccccccccccccCCchhhhH--HHHHHhcCCCcccCCCCCCccchh
Q psy12224 122 KVLLETINFYYA-FFQITPHMALKRVLMILGASLEFDRRFNSEIIERPSDEIEV--PQLIRQIPNLGEKNRERPLYHKYS 198 (904)
Q Consensus 122 ~Vl~dTi~~Fyy-~~~ltp~mt~~~LL~ILS~A~EF~~~~n~eI~vR~~E~~eL--~kL~k~lp~l~~k~Ke~~~~~~~~ 198 (904)
.|..+|+..|.. +.......+...++..+|.+.||. .+..|..+..++ ..+....+.+. ........
T Consensus 512 yi~~~sa~~~~~~l~~~~~~~~~~~~l~~is~~pd~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 581 (766)
T COG1204 512 YIDPESAKIFRDLLAELALEPTEIGLLYLISLTPDLM-----PIKLRERESSELVLDELEEQSDYLL-----GERLDELA 581 (766)
T ss_pred cCCHHHHHHHHHHHHHhccccchHHHhhhhhcCccch-----hhhhhhhhhhhhhHHHHHhcchHHh-----hccccccc
Confidence 345555655531 122222247889999999999999 777777776664 34444444321 11122334
Q ss_pred hhHHHHHHHHhcCCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHhhccCcccchHHHHHHHHHHHHHHHhccCC
Q psy12224 199 IKARALIYAHLSNMQLTSETLEADRMYIVKKCPYLLQEMVTCISQLILLAYAQRVPRLIHIETLENVMKLCPMIVQGMWD 278 (904)
Q Consensus 199 ~KA~iLLqAHLsRi~Lp~~dL~~D~~~IL~~apRLLqAMvdIa~~lg~la~~rr~~~~p~L~taln~m~L~QmIvQalW~ 278 (904)
.|.+.++++......+...-...|..+|+.+..+...++..++....| + ++. +..|+.++.+..|.
T Consensus 582 ~e~~~~l~~~~~~~~l~~wi~~~~~~~i~~~~~~~~~dl~~~~~~a~w------------~-~~~-~~~l~~~~~r~~~~ 647 (766)
T COG1204 582 VEYNLLLQALKTAARLLDWINEADEDEILNAYGVAPGDLLRIAETAEW------------L-SAD-LLALGKAAERLAKI 647 (766)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhCcHHHHHHHhCcchhhHHhhcchhhh------------h-hhh-hhhhhhhhhhhHhh
Confidence 777888899988888777778889999999999999999999866544 5 333 89999999999999
Q ss_pred CCCCcccCCCCCHHHHHHh
Q psy12224 279 FKNPLLQLPYVTDDHLKHF 297 (904)
Q Consensus 279 ~~SPLLQLPhvtee~lk~l 297 (904)
...++.|+ ........++
T Consensus 648 ~~~~~~~~-~~~~~~~~ri 665 (766)
T COG1204 648 LGLGLHVL-RKLEILSLRI 665 (766)
T ss_pred hCCCcccc-ccchhhhhhh
Confidence 99998887 5555544444
No 83
>PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A ....
Probab=80.36 E-value=1.9 Score=36.56 Aligned_cols=54 Identities=17% Similarity=0.275 Sum_probs=45.1
Q ss_pred CcccCCCCCHHHHHHhhhcccCCCCHHHHHcCCHHHHHHHHhhCCHHHHHHHHHHHc
Q psy12224 282 PLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLG 338 (904)
Q Consensus 282 PLLQLPhvtee~lk~l~~kk~~V~sL~dL~~m~~eEr~~lL~~Lse~q~~dV~kvl~ 338 (904)
.|+++|+|++..++.| ...++.|+.+|+..+.++...+ .++++...+.+...++
T Consensus 6 ~L~~I~Gig~~~a~~L--~~~G~~t~~~l~~a~~~~L~~i-~Gig~~~a~~i~~~~~ 59 (60)
T PF14520_consen 6 DLLSIPGIGPKRAEKL--YEAGIKTLEDLANADPEELAEI-PGIGEKTAEKIIEAAR 59 (60)
T ss_dssp HHHTSTTCHHHHHHHH--HHTTCSSHHHHHTSHHHHHHTS-TTSSHHHHHHHHHHHH
T ss_pred hhccCCCCCHHHHHHH--HhcCCCcHHHHHcCCHHHHhcC-CCCCHHHHHHHHHHHh
Confidence 3778999999999999 5567999999999988887763 4689999999888764
No 84
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=69.26 E-value=2.9 Score=43.13 Aligned_cols=29 Identities=41% Similarity=0.386 Sum_probs=28.1
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhcCCCCC
Q psy12224 7 TPLKPSGASEASIKKAYRKQSLILHPDKE 35 (904)
Q Consensus 7 ILGV~~~As~~eIKkAYRkLSlkyHPDKn 35 (904)
+||+...+...+|+++||++...+|||+.
T Consensus 118 ~l~~~~~~~~~~i~~~~r~l~~e~~~d~a 146 (174)
T COG1076 118 VLGVEIKADQDAIKKAYRKLLSEQHPDKA 146 (174)
T ss_pred HhcCchhhhHHHHHHHHHHHHHhcCHHHH
Confidence 89999999999999999999999999995
No 85
>KOG0724|consensus
Probab=68.17 E-value=4.4 Score=45.63 Aligned_cols=52 Identities=38% Similarity=0.581 Sum_probs=42.7
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCC-------chHHHHHHHHHHHHHcCChHHHHHhhhc
Q psy12224 13 GASEASIKKAYRKQSLILHPDKET-------GDEKAFMKLTKAYQALTDEESRRNFEKY 64 (904)
Q Consensus 13 ~As~~eIKkAYRkLSlkyHPDKnp-------~~ee~F~kI~kAYevLtDp~~R~~YD~y 64 (904)
.++..+|+.+|+..++..||++-. ..++.|.+|.+||.+|.+.+.|..+|.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~ 61 (335)
T KOG0724|consen 3 LASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSW 61 (335)
T ss_pred cccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhh
Confidence 467889999999999999999863 2356799999999999997666666653
No 86
>PF13543 KSR1-SAM: SAM like domain present in kinase suppressor RAS 1
Probab=66.12 E-value=61 Score=32.38 Aligned_cols=57 Identities=16% Similarity=0.345 Sum_probs=41.6
Q ss_pred CCCcccCC---------CCCHHHHHHhhhcccCCCCHHHHHcCCHHHHHHHHhh--CCHHHHHHHHHHHcc
Q psy12224 280 KNPLLQLP---------YVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKF--MNDEQYSDMLKVLGN 339 (904)
Q Consensus 280 ~SPLLQLP---------hvtee~lk~l~~kk~~V~sL~dL~~m~~eEr~~lL~~--Lse~q~~dV~kvl~~ 339 (904)
..-|.+.| ++.++.+..+.. +..|+.+|++|++.+.+.+|.. .++++...+.+++++
T Consensus 60 ~~~l~~yP~l~~WL~vVgl~~~~i~~i~~---~~~tLe~Llemsd~el~~~l~~~g~~~EE~rRL~~Al~~ 127 (129)
T PF13543_consen 60 AAELNSYPSLRQWLRVVGLRPESIQAILS---KVLTLEALLEMSDEELKEILNRCGAREEECRRLCRALSN 127 (129)
T ss_pred chhcccCCcHHHHhhhcCCCHHHHHHHHH---hhcCHHHHHhCCHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 34566777 455677766632 4589999999999999999984 557777777766654
No 87
>KOG1832|consensus
Probab=64.56 E-value=3.9 Score=51.11 Aligned_cols=19 Identities=16% Similarity=-0.202 Sum_probs=10.4
Q ss_pred CCCCCCCCCcceEEEEEeC
Q psy12224 552 CPRFPEDKQEFWWIYISDR 570 (904)
Q Consensus 552 aPyFP~eK~E~WWv~V~D~ 570 (904)
|-|=|-++---|=-++-|.
T Consensus 1236 a~FsP~D~LIlndGvLWDv 1254 (1516)
T KOG1832|consen 1236 AHFSPCDTLILNDGVLWDV 1254 (1516)
T ss_pred cccCCCcceEeeCceeeee
Confidence 3455666666554444444
No 88
>KOG1189|consensus
Probab=64.15 E-value=3.4 Score=50.85 Aligned_cols=6 Identities=33% Similarity=0.468 Sum_probs=4.1
Q ss_pred HccCCc
Q psy12224 337 LGNMPY 342 (904)
Q Consensus 337 l~~~P~ 342 (904)
.+.||+
T Consensus 473 ~s~mP~ 478 (960)
T KOG1189|consen 473 ESQMPR 478 (960)
T ss_pred hhhcch
Confidence 456888
No 89
>KOG1832|consensus
Probab=63.43 E-value=3.8 Score=51.27 Aligned_cols=7 Identities=57% Similarity=1.056 Sum_probs=4.1
Q ss_pred cCCCccc
Q psy12224 612 CDSYLGF 618 (904)
Q Consensus 612 SDSYlG~ 618 (904)
-|||||.
T Consensus 1370 ~D~~l~v 1376 (1516)
T KOG1832|consen 1370 TDSFLGV 1376 (1516)
T ss_pred ccceEEE
Confidence 3666664
No 90
>KOG0943|consensus
Probab=59.12 E-value=6 Score=50.75 Aligned_cols=15 Identities=33% Similarity=0.421 Sum_probs=8.1
Q ss_pred HHHHhhcchhhhhHh
Q psy12224 826 MFLETMLQPDILSYI 840 (904)
Q Consensus 826 ~~~~~~~~~~~~~~~ 840 (904)
-.||.|+.|-.--|-
T Consensus 2034 Dile~m~Rp~mal~s 2048 (3015)
T KOG0943|consen 2034 DILEAMLRPGMALAS 2048 (3015)
T ss_pred HHHHhccCcchheec
Confidence 356666666544333
No 91
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=58.39 E-value=27 Score=29.35 Aligned_cols=36 Identities=19% Similarity=0.355 Sum_probs=22.9
Q ss_pred EEEEEcCCCCceeEEEEEEEcCCC-ccccceEEEEEEee
Q psy12224 592 QLKFTAPRWPGVYTFSVCLRCDSY-LGFDQMQDIKLDVK 629 (904)
Q Consensus 592 ~LkF~AP~~pG~y~ytv~v~SDSY-lG~Dq~~dikl~V~ 629 (904)
.+.|+ +-.||.|+|.|.++...- -..+. ..|+|.|+
T Consensus 30 ~~~~~-~L~~G~Y~l~V~a~~~~~~~~~~~-~~l~i~I~ 66 (66)
T PF07495_consen 30 SISYT-NLPPGKYTLEVRAKDNNGKWSSDE-KSLTITIL 66 (66)
T ss_dssp EEEEE-S--SEEEEEEEEEEETTS-B-SS--EEEEEEEE
T ss_pred EEEEE-eCCCEEEEEEEEEECCCCCcCccc-EEEEEEEC
Confidence 55665 457899999999987543 33333 77777774
No 92
>PRK07758 hypothetical protein; Provisional
Probab=58.05 E-value=23 Score=33.52 Aligned_cols=51 Identities=12% Similarity=0.219 Sum_probs=42.0
Q ss_pred CCCCCHHHHHHhhhcccCCCCHHHHHcCCHHHHHHHHhhCCHHHHHHHHHHHcc
Q psy12224 286 LPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGN 339 (904)
Q Consensus 286 LPhvtee~lk~l~~kk~~V~sL~dL~~m~~eEr~~lL~~Lse~q~~dV~kvl~~ 339 (904)
+|.++.-.+..| +..+|.++.||+.+++++..++ +++.+.-+++|.+.+..
T Consensus 39 ~~~LSvRA~N~L--k~AGI~TL~dLv~~te~ELl~i-knlGkKSL~EIkekL~E 89 (95)
T PRK07758 39 LSLLSAPARRAL--EHHGIHTVEELSKYSEKEILKL-HGMGPASLPKLRKALEE 89 (95)
T ss_pred CccccHHHHHHH--HHcCCCcHHHHHcCCHHHHHHc-cCCCHHHHHHHHHHHHH
Confidence 457787777878 7789999999999999998874 56888888888877765
No 93
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=58.03 E-value=17 Score=40.61 Aligned_cols=57 Identities=11% Similarity=0.184 Sum_probs=49.7
Q ss_pred CCCcccCCCCCHHHHHHhhhcccCCCCHHHHHcCCHHHHHHHHhhCCHHHHHHHHHHHcc
Q psy12224 280 KNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGN 339 (904)
Q Consensus 280 ~SPLLQLPhvtee~lk~l~~kk~~V~sL~dL~~m~~eEr~~lL~~Lse~q~~dV~kvl~~ 339 (904)
.-||..+|.|+...+++| .+.++.|+.+|+++++++...+++ ++++....+.+.+..
T Consensus 5 ~~~l~~l~gIg~~~a~~L--~~~Gi~t~~dl~~~~~~~L~~~~g-~~~~~a~~l~~~a~~ 61 (317)
T PRK04301 5 EKDLEDLPGVGPATAEKL--REAGYDTVEAIAVASPKELSEAAG-IGESTAAKIIEAARE 61 (317)
T ss_pred cccHhhcCCCCHHHHHHH--HHcCCCCHHHHHcCCHHHHHHhcC-CCHHHHHHHHHHHHH
Confidence 468899999999999999 778999999999999999988775 788888888887764
No 94
>PF03115 Astro_capsid: Astrovirus capsid protein precursor; InterPro: IPR004337 The astrovirus genome is apparently organised with nonstructural proteins encoded at the 5' end and structural proteins at the 3' end []. Proteins in this family are encoded by astrovirus ORF2, one of the three astrovirus ORFs (1a, 1b, 2). The proteins contain a viral RNA-dependent RNA polymerase motif []. The 87kDa precursor polyprotein undergoes an intracellular cleavage to form a 79kDa protein. Subsequently, extracellular trypsin cleavage yields the three proteins forming the infectious virion [].; PDB: 3QSQ_A 3TS3_D.
Probab=57.48 E-value=3.4 Score=51.74 Aligned_cols=9 Identities=33% Similarity=0.335 Sum_probs=3.0
Q ss_pred ccCceEEEE
Q psy12224 361 TAGAIITVT 369 (904)
Q Consensus 361 tpGsiVTlt 369 (904)
+|++.+.|.
T Consensus 427 ~p~~~~~~~ 435 (787)
T PF03115_consen 427 TPGDPFYVV 435 (787)
T ss_dssp GG--EEEEE
T ss_pred CCCCcEEEE
Confidence 444444443
No 95
>PF03118 RNA_pol_A_CTD: Bacterial RNA polymerase, alpha chain C terminal domain; InterPro: IPR011260 The core of the bacterial RNA polymerase (RNAP) consists of four subunits, two alpha, a beta and a beta', which are conserved from bacteria to mammals. The alpha subunit (RpoA) initiates RNAP assembly by dimerising to form a platform on which the beta subunits can interact. The alpha subunit consists of a N-terminal domain (NTD) and a C-terminal domain (CTD), connected by a short linker. The NTD is essential for RNAP assembly, while the CTD is necessary for transcription regulation, interacting with transcription factors and promoter upstream elements. In Escherichia coli, the catabolite activator protein (CAP or CRP) was shown to exert its effect through its interactions with the CTD, where CAP binding to CTD promotes RNAP binding to promoter DNA, thereby stimulating transcription initiation at class I CAP-dependent promoters. At class II CAP-dependent promoters, the interaction of CAP with CTD is one of multiple interactions involved in activation []. The CTD has a compact structure of four helices and two long arms enclosing its hydrophobic core, making its folding topology distinct from most other binding proteins. The upstream promoter element-binding site is formed from helices 1 and 4 [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3N97_B 1XS9_D 3K4G_A 3N4M_B 1COO_A 1LB2_E 3IYD_A 1Z3E_B 3GFK_B 3IHQ_B ....
Probab=55.09 E-value=23 Score=31.06 Aligned_cols=55 Identities=13% Similarity=0.236 Sum_probs=40.5
Q ss_pred CCCcccCCCCCHHHHHHhhhcccCCCCHHHHHcCCHHHHHHHHhhCCHHHHHHHHHHHc
Q psy12224 280 KNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLG 338 (904)
Q Consensus 280 ~SPLLQLPhvtee~lk~l~~kk~~V~sL~dL~~m~~eEr~~lL~~Lse~q~~dV~kvl~ 338 (904)
+.|+-+| +++......| ++.+|.++.||+.++.++...+ +++...-+++|...+.
T Consensus 11 ~~~I~~L-~LS~Ra~n~L--~~~~I~tv~dL~~~s~~~L~~i-~n~G~ksl~EI~~~L~ 65 (66)
T PF03118_consen 11 DTPIEDL-GLSVRAYNCL--KRAGIHTVGDLVKYSEEDLLKI-KNFGKKSLEEIKEKLK 65 (66)
T ss_dssp CSBGGGS-TSBHHHHHHH--HCTT--BHHHHHCS-HHHHHTS-TTSHHHHHHHHHHHHH
T ss_pred cCcHHHh-CCCHHHHHHH--HHhCCcCHHHHHhCCHHHHHhC-CCCCHhHHHHHHHHHc
Confidence 4566677 5888888888 7889999999999999887653 4688888888877664
No 96
>KOG4434|consensus
Probab=53.34 E-value=6.6 Score=44.89 Aligned_cols=12 Identities=25% Similarity=0.404 Sum_probs=5.2
Q ss_pred HhhhHHHHHHHH
Q psy12224 228 KKCPYLLQEMVT 239 (904)
Q Consensus 228 ~~apRLLqAMvd 239 (904)
+.+|.++|++-.
T Consensus 137 KlspM~vQgLwq 148 (520)
T KOG4434|consen 137 KLSPMFVQGLWQ 148 (520)
T ss_pred hccHHHHHHHHH
Confidence 334444444433
No 97
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=52.09 E-value=22 Score=37.64 Aligned_cols=44 Identities=30% Similarity=0.305 Sum_probs=36.5
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHcCChHHHH
Q psy12224 11 PSGASEASIKKAYRKQSLILHPDKETGDEKAFMKLTKAYQALTDEESRR 59 (904)
Q Consensus 11 ~~~As~~eIKkAYRkLSlkyHPDKnp~~ee~F~kI~kAYevLtDp~~R~ 59 (904)
+++||.+||.+|+..|-.+| .++++.=.+|-.||+.+--...|.
T Consensus 1 S~~ASfeEIq~Arn~ll~~y-----~gd~~~~~~IEaAYD~ILM~rL~~ 44 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQY-----AGDEKSREAIEAAYDAILMERLRQ 44 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999 466778889999999776554443
No 98
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=51.02 E-value=28 Score=38.73 Aligned_cols=53 Identities=11% Similarity=0.202 Sum_probs=45.7
Q ss_pred cccCCCCCHHHHHHhhhcccCCCCHHHHHcCCHHHHHHHHhhCCHHHHHHHHHHHc
Q psy12224 283 LLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLG 338 (904)
Q Consensus 283 LLQLPhvtee~lk~l~~kk~~V~sL~dL~~m~~eEr~~lL~~Lse~q~~dV~kvl~ 338 (904)
|.++|++++..+++| .+.++.|+.+|+..+.+++..+++ ++.+..+.+.+.+.
T Consensus 1 l~~i~gig~~~~~~L--~~~Gi~ti~dl~~~~~~~L~~~~g-~~~~~a~~l~~~~~ 53 (310)
T TIGR02236 1 LEDLPGVGPATAEKL--REAGYDTFEAIAVASPKELSEIAG-ISEGTAAKIIQAAR 53 (310)
T ss_pred CcccCCCCHHHHHHH--HHcCCCCHHHHHcCCHHHHHhccC-CCHHHHHHHHHHHH
Confidence 457999999999999 778899999999999999988775 78878888877775
No 99
>KOG0943|consensus
Probab=50.90 E-value=8.8 Score=49.40 Aligned_cols=12 Identities=25% Similarity=0.141 Sum_probs=7.2
Q ss_pred HHHHHhcccccc
Q psy12224 146 VLMILGASLEFD 157 (904)
Q Consensus 146 LL~ILS~A~EF~ 157 (904)
|+.-||+|.|-.
T Consensus 1265 L~~SLCCCsECA 1276 (3015)
T KOG0943|consen 1265 LLESLCCCSECA 1276 (3015)
T ss_pred cchhhhhhHHHH
Confidence 555666666654
No 100
>PF11081 DUF2890: Protein of unknown function (DUF2890); InterPro: IPR021304 This entry contains the 33kDa and 22kDa phosphoproteins from vertebrate adenoviruses.
Probab=50.04 E-value=5.8 Score=41.63 Aligned_cols=15 Identities=20% Similarity=0.616 Sum_probs=8.0
Q ss_pred EeecCCCCCCCCCCCC
Q psy12224 627 DVKEAPEVPTEHPQWE 642 (904)
Q Consensus 627 ~V~ea~~v~~~~~e~d 642 (904)
.+..++ ++++.++||
T Consensus 11 ~~~~~~-~~~~eE~w~ 25 (187)
T PF11081_consen 11 KQQPPP-PEDEEEEWD 25 (187)
T ss_pred ccCCCC-Ccchhhhhh
Confidence 344443 335667787
No 101
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=49.58 E-value=11 Score=48.10 Aligned_cols=20 Identities=15% Similarity=0.383 Sum_probs=9.2
Q ss_pred cccchhhh---hhhhhhHHHHHH
Q psy12224 810 ESKMSIAN---RIVSEATTMFLE 829 (904)
Q Consensus 810 ~~~~~~~~---~~~~~~~~~~~~ 829 (904)
..|.++.+ +++..+..++-+
T Consensus 673 ~~k~~lL~~~l~ll~~~~~l~~~ 695 (840)
T PF04147_consen 673 QFKLSLLATALRLLDRFADLYSS 695 (840)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcc
Confidence 34444433 444555555443
No 102
>KOG1834|consensus
Probab=48.90 E-value=15 Score=44.90 Aligned_cols=8 Identities=25% Similarity=0.675 Sum_probs=3.6
Q ss_pred EEEEcCCC
Q psy12224 608 VCLRCDSY 615 (904)
Q Consensus 608 v~v~SDSY 615 (904)
|.|+|=+|
T Consensus 832 ViVVcVgf 839 (952)
T KOG1834|consen 832 VIVVCVGF 839 (952)
T ss_pred EEEeehhH
Confidence 44444444
No 103
>PRK12766 50S ribosomal protein L32e; Provisional
Probab=48.69 E-value=40 Score=36.75 Aligned_cols=55 Identities=11% Similarity=0.109 Sum_probs=47.6
Q ss_pred CCcccCCCCCHHHHHHhhhcccCCCCHHHHHcCCHHHHHHHHhhCCHHHHHHHHHHHc
Q psy12224 281 NPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLG 338 (904)
Q Consensus 281 SPLLQLPhvtee~lk~l~~kk~~V~sL~dL~~m~~eEr~~lL~~Lse~q~~dV~kvl~ 338 (904)
..|.+||+|....++.| .+.++.|+.+|...+.+++..+- +++....+.|.+.++
T Consensus 3 ~~L~~IpGIG~krakkL--l~~GF~Sve~Ik~AS~eEL~~V~-GIg~k~AekI~e~l~ 57 (232)
T PRK12766 3 EELEDISGVGPSKAEAL--REAGFESVEDVRAADQSELAEVD-GIGNALAARIKADVG 57 (232)
T ss_pred cccccCCCcCHHHHHHH--HHcCCCCHHHHHhCCHHHHHHcc-CCCHHHHHHHHHHhc
Confidence 46899999999999999 56678999999999999988754 488999999998887
No 104
>PF05764 YL1: YL1 nuclear protein; InterPro: IPR008895 The proteins in this family are designated YL1 []. They have been shown to be DNA-binding and may be transcription factors [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=48.49 E-value=14 Score=40.20 Aligned_cols=10 Identities=40% Similarity=0.498 Sum_probs=5.4
Q ss_pred CCCCccCccc
Q psy12224 659 VSEFTTDEDV 668 (904)
Q Consensus 659 es~~ttD~e~ 668 (904)
+|||++|+++
T Consensus 57 Dsdf~~se~d 66 (240)
T PF05764_consen 57 DSDFDDSEDD 66 (240)
T ss_pred ccccCccccC
Confidence 4666655543
No 105
>PTZ00035 Rad51 protein; Provisional
Probab=47.05 E-value=33 Score=39.11 Aligned_cols=56 Identities=11% Similarity=0.142 Sum_probs=48.6
Q ss_pred ccCCCCCHHHHHHhhhcccCCCCHHHHHcCCHHHHHHHHhhCCHHHHHHHHHHHccCCc
Q psy12224 284 LQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMPY 342 (904)
Q Consensus 284 LQLPhvtee~lk~l~~kk~~V~sL~dL~~m~~eEr~~lL~~Lse~q~~dV~kvl~~~P~ 342 (904)
+|-|.+++..+++| ++.++.|+.+|+..+..++..+. +++....+++++.++.+..
T Consensus 26 l~~~g~~~~~~~kL--~~~g~~t~~~~~~~~~~~L~~~~-gis~~~~~~i~~~~~~~~~ 81 (337)
T PTZ00035 26 LQSAGINAADIKKL--KEAGICTVESVAYATKKDLCNIK-GISEAKVEKIKEAASKLVP 81 (337)
T ss_pred HhcCCCCHHHHHHH--HHcCCCcHHHHHhCCHHHHHHhh-CCCHHHHHHHHHHHHHhcc
Confidence 33478999999999 78899999999999999998876 5999999999999888754
No 106
>KOG3540|consensus
Probab=46.16 E-value=21 Score=42.25 Aligned_cols=9 Identities=56% Similarity=0.973 Sum_probs=6.3
Q ss_pred HHHhccCCC
Q psy12224 271 MIVQGMWDF 279 (904)
Q Consensus 271 mIvQalW~~ 279 (904)
|-+||+|..
T Consensus 48 ~~~qG~w~~ 56 (615)
T KOG3540|consen 48 MNEQGMWEP 56 (615)
T ss_pred hccccccCC
Confidence 456799964
No 107
>KOG3555|consensus
Probab=44.92 E-value=13 Score=42.47 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=11.8
Q ss_pred CCCCccCccccccCCccccccccee
Q psy12224 659 VSEFTTDEDVEDDLKLEPCAQLMLY 683 (904)
Q Consensus 659 es~~ttD~e~e~d~~~~~~~~~~~~ 683 (904)
|++.|.|+|||+|+++.. |.-|+|
T Consensus 410 e~el~~ddedded~~dg~-aD~~~y 433 (434)
T KOG3555|consen 410 ESELTSDDEDDEDSDDGS-ADQMGY 433 (434)
T ss_pred ccccccccccccccccCc-cccccc
Confidence 556665555544433332 345555
No 108
>KOG3241|consensus
Probab=43.08 E-value=16 Score=38.06 Aligned_cols=17 Identities=6% Similarity=0.222 Sum_probs=8.5
Q ss_pred CCCCCCCCCCCcccccC
Q psy12224 638 HPQWEMSGEEDEGDEEM 654 (904)
Q Consensus 638 ~~e~dise~eed~~ee~ 654 (904)
|+.||.+++|+|++|..
T Consensus 191 e~~DDd~d~d~D~eD~~ 207 (227)
T KOG3241|consen 191 EAHDDDSDPDSDEEDNV 207 (227)
T ss_pred cccccccCCcccccccc
Confidence 34444566655554433
No 109
>PF05285 SDA1: SDA1; InterPro: IPR007949 This domain consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus [].
Probab=41.31 E-value=16 Score=41.41 Aligned_cols=10 Identities=20% Similarity=0.361 Sum_probs=5.7
Q ss_pred cCCCccccce
Q psy12224 612 CDSYLGFDQM 621 (904)
Q Consensus 612 SDSYlG~Dq~ 621 (904)
.+.--|++.-
T Consensus 65 ~~~i~G~elL 74 (324)
T PF05285_consen 65 ADGIPGAELL 74 (324)
T ss_pred ccCCChHHHH
Confidence 5555666653
No 110
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=39.21 E-value=22 Score=43.96 Aligned_cols=14 Identities=21% Similarity=0.432 Sum_probs=8.8
Q ss_pred hhHHHHHhcCCCcc
Q psy12224 852 KVYEELKRKGFPLD 865 (904)
Q Consensus 852 ~~~~~~~~~~~~~~ 865 (904)
++.+-|.+.|+||.
T Consensus 338 rL~~lLAkMGisL~ 351 (622)
T PF02724_consen 338 RLHKLLAKMGISLK 351 (622)
T ss_pred HHHHHHHHhCCcHH
Confidence 45566666777764
No 111
>PF06991 Prp19_bind: Splicing factor, Prp19-binding domain; InterPro: IPR009730 This entry represents the C terminus (approximately 300 residues) of eukaryotic micro-fibrillar-associated protein 1, which is a component of elastin-associated microfibrils in the extracellular matrix [].
Probab=38.20 E-value=21 Score=39.79 Aligned_cols=15 Identities=27% Similarity=0.417 Sum_probs=11.1
Q ss_pred eeecccCCCcccccc
Q psy12224 682 LYLRPAAAPHAGRLM 696 (904)
Q Consensus 682 ~~~~~~~~~~~~~~~ 696 (904)
.-|+|.-.|-..|..
T Consensus 35 ~~lKPVFV~K~~R~T 49 (276)
T PF06991_consen 35 PLLKPVFVPKKQRKT 49 (276)
T ss_pred ccccceeeccccccc
Confidence 567898888777763
No 112
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=37.36 E-value=23 Score=45.25 Aligned_cols=11 Identities=9% Similarity=0.244 Sum_probs=5.2
Q ss_pred ccceeecccCC
Q psy12224 679 QLMLYLRPAAA 689 (904)
Q Consensus 679 ~~~~~~~~~~~ 689 (904)
..+-|.-|+..
T Consensus 416 ~elPftf~~P~ 426 (840)
T PF04147_consen 416 SELPFTFPCPS 426 (840)
T ss_pred cCCCceecCCC
Confidence 44555544433
No 113
>PF04889 Cwf_Cwc_15: Cwf15/Cwc15 cell cycle control protein; InterPro: IPR006973 This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing [].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=35.86 E-value=15 Score=40.20 Aligned_cols=7 Identities=43% Similarity=0.918 Sum_probs=4.3
Q ss_pred cccchhc
Q psy12224 424 HRPVWMK 430 (904)
Q Consensus 424 k~~~W~k 430 (904)
++|.|..
T Consensus 5 HRPT~~p 11 (244)
T PF04889_consen 5 HRPTFEP 11 (244)
T ss_pred cCCCccc
Confidence 5667754
No 114
>KOG0772|consensus
Probab=35.63 E-value=28 Score=41.70 Aligned_cols=15 Identities=33% Similarity=0.727 Sum_probs=9.8
Q ss_pred ccccccccchhhhhhh
Q psy12224 805 FLWSRESKMSIANRIV 820 (904)
Q Consensus 805 ~~~~~~~~~~~~~~~~ 820 (904)
--|+|..|. ||--.+
T Consensus 323 C~~nrdg~~-iAagc~ 337 (641)
T KOG0772|consen 323 CAWNRDGKL-IAAGCL 337 (641)
T ss_pred eecCCCcch-hhhccc
Confidence 458888877 665443
No 115
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=35.04 E-value=67 Score=36.37 Aligned_cols=54 Identities=7% Similarity=0.071 Sum_probs=46.8
Q ss_pred cCCCCCHHHHHHhhhcccCCCCHHHHHcCCHHHHHHHHhhCCHHHHHHHHHHHccCC
Q psy12224 285 QLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMP 341 (904)
Q Consensus 285 QLPhvtee~lk~l~~kk~~V~sL~dL~~m~~eEr~~lL~~Lse~q~~dV~kvl~~~P 341 (904)
|-+.++...+++| ++.++.|+.+++..+..++..+. ++++....++.+.+...-
T Consensus 5 ~~~g~~~~~~~~L--~~~g~~t~~~~~~~~~~~L~~~~-gls~~~~~~i~~~~~~~~ 58 (313)
T TIGR02238 5 QAHGINAADIKKL--KSAGICTVNGVIMTTRRALCKIK-GLSEAKVDKIKEAASKII 58 (313)
T ss_pred hcCCCCHHHHHHH--HHcCCCcHHHHHhCCHHHHHHhc-CCCHHHHHHHHHHHHhhh
Confidence 3356999999999 78899999999999999988776 599999999999888863
No 116
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=34.76 E-value=70 Score=36.17 Aligned_cols=54 Identities=9% Similarity=0.161 Sum_probs=46.1
Q ss_pred ccCCCCCHHHHHHhhhcccCCCCHHHHHcCCHHHHHHHHhhCCHHHHHHHHHHHccC
Q psy12224 284 LQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNM 340 (904)
Q Consensus 284 LQLPhvtee~lk~l~~kk~~V~sL~dL~~m~~eEr~~lL~~Lse~q~~dV~kvl~~~ 340 (904)
+|-+.+++..+.+| ++.++.|+.+|+..++.++..+. +++.....++...++.+
T Consensus 4 ~~~~~~~~~~~~~l--~~~g~~t~~~~~~~~~~~L~~i~-~ls~~~~~~~~~~~~~~ 57 (316)
T TIGR02239 4 LEGNGITAADIKKL--QEAGLHTVESVAYAPKKQLLEIK-GISEAKADKILAEAAKL 57 (316)
T ss_pred hhcCCCCHHHHHHH--HHcCCCcHHHHHhCCHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence 45566999999999 78899999999999999998876 48998888888877765
No 117
>TIGR01954 nusA_Cterm_rpt transcription termination factor NusA, C-terminal duplication. NusA is a bacterial transcription termination factor. It is named for its interaction with phage lambda protein N, as part of the N utilization substance. Some members of the NusA family have a long C-terminal extension. This model represents an acidic 50-residue region found in two copies toward the C-terminus of most Proteobacterial NusA proteins, spaced about 26 residues apart. Analogous C-terminal extensions in some other bacterial lineages lack apparent homology but appear similarly acidic.
Probab=32.66 E-value=90 Score=24.92 Aligned_cols=47 Identities=9% Similarity=0.169 Sum_probs=37.3
Q ss_pred CCHHHHHHhhhcccCCCCHHHHHcCCHHHHHHHHhhCCHHHHHHHHHHHc
Q psy12224 289 VTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLG 338 (904)
Q Consensus 289 vtee~lk~l~~kk~~V~sL~dL~~m~~eEr~~lL~~Lse~q~~dV~kvl~ 338 (904)
+++..+..| ...++.|+.+|...+.++...+. ++++.....+...++
T Consensus 1 i~~~~~~~L--~~~G~~s~e~la~~~~~eL~~i~-g~~~e~a~~ii~~a~ 47 (50)
T TIGR01954 1 IDEEIAQLL--VEEGFTTVEDLAYVPIDELLSIE-GFDEETAKELINRAR 47 (50)
T ss_pred CCHHHHHHH--HHcCCCCHHHHHccCHHHHhcCC-CCCHHHHHHHHHHHH
Confidence 356667777 56789999999999999988764 588888888876665
No 118
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=30.24 E-value=75 Score=36.56 Aligned_cols=57 Identities=5% Similarity=0.055 Sum_probs=48.0
Q ss_pred CcccCCCCCHHHHHHhhhcccCCCCHHHHHcCCHHHHHHHHhhCCHHHHHHHHHHHccCC
Q psy12224 282 PLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMP 341 (904)
Q Consensus 282 PLLQLPhvtee~lk~l~~kk~~V~sL~dL~~m~~eEr~~lL~~Lse~q~~dV~kvl~~~P 341 (904)
.-+|-+.++...+++| +..++.|+.+|+..+..++..+. ++++.....+++.+..+-
T Consensus 32 ~~l~~~g~~~~~~~kL--~~~g~~tv~~~~~~~~~~L~~~~-g~s~~~~~ki~~~a~~~~ 88 (344)
T PLN03187 32 DKLISQGINAGDVKKL--QDAGIYTCNGLMMHTKKNLTGIK-GLSEAKVDKICEAAEKLL 88 (344)
T ss_pred HHHhhCCCCHHHHHHH--HHcCCCcHHHHHhCCHHHHHHhc-CCCHHHHHHHHHHHHHhh
Confidence 3344467999999999 78899999999999999988765 599999999998888763
No 119
>PF11731 Cdd1: Pathogenicity locus; InterPro: IPR021725 Cdd1 is expressed as part of the pathogenicity locus operon in several different orders of bacteria []. Many members of the family are annotated as being putative mitomycin resistance proteins but this could not be confirmed.
Probab=30.10 E-value=55 Score=30.92 Aligned_cols=38 Identities=16% Similarity=0.183 Sum_probs=33.5
Q ss_pred CCcccCCCCCHHHHHHhhhcccCCCCHHHHHcCCHHHHHH
Q psy12224 281 NPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRS 320 (904)
Q Consensus 281 SPLLQLPhvtee~lk~l~~kk~~V~sL~dL~~m~~eEr~~ 320 (904)
+.|.+||+|.....+-| ..-+|.++.+|...++.+.-.
T Consensus 12 ~~L~~iP~IG~a~a~DL--~~LGi~s~~~L~g~dP~~Ly~ 49 (93)
T PF11731_consen 12 SDLTDIPNIGKATAEDL--RLLGIRSPADLKGRDPEELYE 49 (93)
T ss_pred HHHhcCCCccHHHHHHH--HHcCCCCHHHHhCCCHHHHHH
Confidence 57999999999999988 678999999999999887643
No 120
>KOG3130|consensus
Probab=29.58 E-value=31 Score=40.07 Aligned_cols=17 Identities=35% Similarity=0.673 Sum_probs=11.5
Q ss_pred CCCCccCCCCccccccc
Q psy12224 766 NSLQPVPIPPAKKRGYV 782 (904)
Q Consensus 766 ~~~~~~~~~~~~~~~~~ 782 (904)
-+|-|.++-|.+|.|-+
T Consensus 444 t~l~P~~V~~e~k~g~~ 460 (514)
T KOG3130|consen 444 TKLLPLSVTPEAKSGTV 460 (514)
T ss_pred cccCCCccccccccchh
Confidence 46677777777776655
No 121
>KOG3241|consensus
Probab=29.50 E-value=37 Score=35.49 Aligned_cols=8 Identities=13% Similarity=0.044 Sum_probs=3.8
Q ss_pred ccCCcccc
Q psy12224 670 DDLKLEPC 677 (904)
Q Consensus 670 ~d~~~~~~ 677 (904)
||++++++
T Consensus 215 edsde~~q 222 (227)
T KOG3241|consen 215 EDSDENEQ 222 (227)
T ss_pred cccccccc
Confidence 44445544
No 122
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=29.16 E-value=40 Score=45.55 Aligned_cols=16 Identities=13% Similarity=0.243 Sum_probs=8.4
Q ss_pred hhhcccceeccccccc
Q psy12224 710 LCSVGRRRVLSESFST 725 (904)
Q Consensus 710 ~~~~~~~~~~~~~~~~ 725 (904)
+|..-..--++||-.+
T Consensus 259 vcdf~~~i~~~es~~~ 274 (2849)
T PTZ00415 259 VCDFTDHIKMKEAGKK 274 (2849)
T ss_pred eeeccccceecccCcc
Confidence 4555555555665443
No 123
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=29.15 E-value=77 Score=40.54 Aligned_cols=53 Identities=23% Similarity=0.434 Sum_probs=45.1
Q ss_pred CcccCCCCCHHHHHHhhhcccCCCCHHHHHcCCHHHHHHHHhhCCHHHHHHHHHHHcc
Q psy12224 282 PLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGN 339 (904)
Q Consensus 282 PLLQLPhvtee~lk~l~~kk~~V~sL~dL~~m~~eEr~~lL~~Lse~q~~dV~kvl~~ 339 (904)
-|+.||+|+...++.+. .++.|+.+|++++.++...+++ +++.++.|..+++.
T Consensus 758 ~L~~lPgI~~~~a~~ll---~~f~si~~l~~as~eeL~~~iG--~~~~A~~i~~fl~~ 810 (814)
T TIGR00596 758 FLLKLPGVTKKNYRNLR---KKVKSIRELAKLSQNELNELIG--DEEAAKRLYDFLRT 810 (814)
T ss_pred HHHHCCCCCHHHHHHHH---HHcCCHHHHHhCCHHHHHHHhC--CHHHHHHHHHHhcc
Confidence 37889999999998885 2478999999999999988765 68889999999875
No 124
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=28.36 E-value=32 Score=42.10 Aligned_cols=17 Identities=24% Similarity=0.413 Sum_probs=10.6
Q ss_pred eEEeccceeeeecceeE
Q psy12224 574 TLLTSPYHITELVDQEQ 590 (904)
Q Consensus 574 ~Ll~~p~~vt~L~~~~e 590 (904)
+|...|+.|.+|.+.+-
T Consensus 824 qL~e~Pf~VitLeevEi 840 (1001)
T COG5406 824 QLDEAPFFVITLEEVEI 840 (1001)
T ss_pred eccCCceEEEEecceeE
Confidence 34467887877755444
No 125
>KOG3064|consensus
Probab=27.93 E-value=24 Score=38.80 Aligned_cols=10 Identities=20% Similarity=0.497 Sum_probs=5.2
Q ss_pred HHHHHHHHHh
Q psy12224 265 VMKLCPMIVQ 274 (904)
Q Consensus 265 ~m~L~QmIvQ 274 (904)
+.+|.|+++.
T Consensus 112 ltklTQylir 121 (303)
T KOG3064|consen 112 LTKLTQYLIR 121 (303)
T ss_pred HHHHHHHHHH
Confidence 4555555554
No 126
>PHA00458 single-stranded DNA-binding protein
Probab=26.75 E-value=1.6e+02 Score=31.98 Aligned_cols=51 Identities=22% Similarity=0.272 Sum_probs=30.6
Q ss_pred CcceEE--EEEeCCCCeEEeccceeeeecceeEEEEEEEcCC--CCceeEEEEEEEcCC
Q psy12224 560 QEFWWI--YISDRKSRTLLTSPYHITELVDQEQVQLKFTAPR--WPGVYTFSVCLRCDS 614 (904)
Q Consensus 560 ~E~WWv--~V~D~K~~~Ll~~p~~vt~L~~~~ev~LkF~AP~--~pG~y~ytv~v~SDS 614 (904)
-+.|=+ .|+|.+-.+|-- +..+..+..++++|..-+ |++.--..|-|+=||
T Consensus 121 Ge~~~i~l~v~DskGK~l~~----vp~I~gGS~~kVkf~v~pY~~~~~~gasVkLqL~s 175 (233)
T PHA00458 121 GENKPIVLRVVDSKGKRIED----VPAIGGGSKLKVKFSLFPYKWNAAVGASVKLQLES 175 (233)
T ss_pred CcccccceeEEcCCCcCcCc----CccccCCceeEEEEEEeccccCCcccceeEEEeee
Confidence 455654 466877766543 334566778888886543 667655555555444
No 127
>TIGR03786 strep_pil_rpt streptococcal pilin isopeptide linkage domain. This model describes a domain that occurs once in the major pilin of Streptococcus pyogenes, Spy0128, but in higher copy numbers in other streptococcal proteins. The domain occurs nine times in a surface-anchored protein of Bifidobacterium longum. All members of this family have LPXTG-type sortase target sequences. The S. pyogenes major pilin has been shown to undergo isopeptide bond cross-linking, mediated by sortases, that are critical to maintaining pilus structural integrity. One such Lys-to-Asn isopeptide bond is to a near-invariant Asn near the C-terminal end of this domain (column 81 of the seed alignment). A Glu in the S. pyogenes major pilin (column 25 of the seed alignment), invariant as Glu or Gln, is described as catalytic for isopeptide bond formation.
Probab=26.39 E-value=1.1e+02 Score=26.77 Aligned_cols=37 Identities=22% Similarity=0.325 Sum_probs=28.2
Q ss_pred EEEEEcCCCCceeEEEEEEEcCCCccccce---EEEEEEeecC
Q psy12224 592 QLKFTAPRWPGVYTFSVCLRCDSYLGFDQM---QDIKLDVKEA 631 (904)
Q Consensus 592 ~LkF~AP~~pG~y~ytv~v~SDSYlG~Dq~---~dikl~V~ea 631 (904)
+|.|. +||.|+|+|.=..++.=|+.+. +.+.+.|.+.
T Consensus 3 ~i~f~---~~G~Y~YtV~E~~g~~~gvtYD~~~~~vtV~V~~~ 42 (64)
T TIGR03786 3 PLTFT---KVGTYTYTITEVKGKEPGVTYDTTVHTVTVTVTDD 42 (64)
T ss_pred ccEeC---CCeEEEEEEEEeCCCCCCeEecCCEEEEEEEEEEC
Confidence 46777 4699999999999998886554 5667777653
No 128
>KOG0699|consensus
Probab=26.27 E-value=51 Score=38.08 Aligned_cols=20 Identities=25% Similarity=0.338 Sum_probs=11.5
Q ss_pred hhhhhhhHHHHHHhhcchhh
Q psy12224 817 NRIVSEATTMFLETMLQPDI 836 (904)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~ 836 (904)
|+.+|+...-++...|.|+.
T Consensus 466 n~~ls~iceeL~D~CLAp~T 485 (542)
T KOG0699|consen 466 NSSLSEICEELCDACLAPST 485 (542)
T ss_pred CchHHHHHHHHHHhhcCCCC
Confidence 45555555555666666654
No 129
>PF03153 TFIIA: Transcription factor IIA, alpha/beta subunit; InterPro: IPR004855 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the precursor that yields both the alpha and beta subunits of TFIIA. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II []. ; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_B 1YTF_B 1RM1_C 1NH2_B.
Probab=26.02 E-value=28 Score=40.00 Aligned_cols=11 Identities=9% Similarity=-0.037 Sum_probs=3.6
Q ss_pred Cccccccccee
Q psy12224 673 KLEPCAQLMLY 683 (904)
Q Consensus 673 ~~~~~~~~~~~ 683 (904)
++..+.+.||-
T Consensus 326 ~~~~~~~~~~c 336 (375)
T PF03153_consen 326 DDFDTDNVVLC 336 (375)
T ss_dssp --STTS-EEEE
T ss_pred cccCcCCEEEE
Confidence 33344455543
No 130
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=26.01 E-value=37 Score=45.77 Aligned_cols=11 Identities=45% Similarity=0.764 Sum_probs=5.0
Q ss_pred cCCCceEEEeh
Q psy12224 842 KGEGKKIFFIK 852 (904)
Q Consensus 842 ~~~~~~~~~~~ 852 (904)
+|.||++|-..
T Consensus 436 ~~k~~~~f~~~ 446 (2849)
T PTZ00415 436 KGKGKHFFSQD 446 (2849)
T ss_pred ccccceeeeee
Confidence 44455544333
No 131
>PF11705 RNA_pol_3_Rpc31: DNA-directed RNA polymerase III subunit Rpc31; InterPro: IPR024661 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. RNA polymerase III contains seventeen subunits in yeasts and in human cells. Twelve of these are akin to RNA polymerase I or II and the other five are RNA polymerase III-specific, and form the functionally distinct groups: (i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31, Rpc34 and Rpc82 form a cluster of enzyme-specific subunits that contribute to transcription initiation in Saccharomyces cerevisiae and Homo sapiens. There is evidence that these subunits are anchored at or near the N-terminal Zn-fold of Rpc1, itself prolonged by a highly conserved but RNA polymerase III-specific domain []. This entry represents the Rpc31 subunit.
Probab=25.95 E-value=29 Score=37.45 Aligned_cols=18 Identities=22% Similarity=0.495 Sum_probs=10.4
Q ss_pred eeCCCCCCCCCcceEEEEEeC
Q psy12224 550 VHCPRFPEDKQEFWWIYISDR 570 (904)
Q Consensus 550 VhaPyFP~eK~E~WWv~V~D~ 570 (904)
.+--+||. |-|..+-.-+
T Consensus 115 ~~~~~fP~---EL~~~~~~~~ 132 (233)
T PF11705_consen 115 FDWEFFPK---ELWPTLRKKK 132 (233)
T ss_pred ccHhhChH---HHHhhccccc
Confidence 34457887 5565555533
No 132
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=25.74 E-value=16 Score=36.77 Aligned_cols=44 Identities=11% Similarity=0.206 Sum_probs=21.7
Q ss_pred ccccc-ccceeecccCCCccccccccCCCCchhhhhhhhhcccce
Q psy12224 674 LEPCA-QLMLYLRPAAAPHAGRLMKNNSTNSSDRLRDLCSVGRRR 717 (904)
Q Consensus 674 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (904)
++|+. ..+.-|+-.-.|-.-+.+.+....+..-.+.+++.+++-
T Consensus 49 ~dETl~ERl~aLkdi~P~~~R~~i~~~~~~~~~~~k~~~~~~g~a 93 (137)
T PF04281_consen 49 EDETLLERLWALKDIFPPSVRNWISSTVSTTSSAVKSLFSFSGKA 93 (137)
T ss_pred ccccHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 55553 444444444444444444444444455556666666553
No 133
>PF00386 C1q: C1q domain; InterPro: IPR001073 This entry represents the C-terminal domain of C1q. C1q is a subunit of the C1 enzyme complex that activates the serum complement system. C1q comprises 6 A, 6 B and 6 C chains. These share the same topology, each possessing a small, globular N-terminal domain, a collagen-like Gly/Pro-rich central region, and a conserved C-terminal region, the C1q domain []. The C1q protein is produced in collagen-producing cells and shows sequence and structural similarity to collagens VIII and X [, ]. This domain is also found in multimerin and EMILIN proteins.; PDB: 1O91_C 2JG8_D 2JG9_A 2WNV_A 2WNU_A 1PK6_A 4DOU_A 1C3H_C 1C28_C 2OII_A ....
Probab=24.70 E-value=1.1e+02 Score=29.21 Aligned_cols=17 Identities=59% Similarity=0.938 Sum_probs=13.9
Q ss_pred EEEcCCCCceeEEEEEEE
Q psy12224 594 KFTAPRWPGVYTFSVCLR 611 (904)
Q Consensus 594 kF~AP~~pG~y~ytv~v~ 611 (904)
.|+|| .+|.|.|++.+.
T Consensus 38 ~Ftap-~~G~Y~F~~~~~ 54 (127)
T PF00386_consen 38 IFTAP-VPGVYFFSFTIM 54 (127)
T ss_dssp EEE-S-S-EEEEEEEEEE
T ss_pred EEecC-CCCEEEEEEEEe
Confidence 79999 689999999999
No 134
>KOG1189|consensus
Probab=24.47 E-value=47 Score=41.54 Aligned_cols=17 Identities=18% Similarity=0.624 Sum_probs=10.9
Q ss_pred CCCCChhhHHHHhhccc
Q psy12224 518 SSDDDDDDWEKYQTGLN 534 (904)
Q Consensus 518 ~~~~dd~ewe~lq~~~~ 534 (904)
++|++..+|..|..+-.
T Consensus 925 sdEE~gkdwdele~ea~ 941 (960)
T KOG1189|consen 925 SDEESGKDWDELEREAR 941 (960)
T ss_pred chhhhccchhhhHHHHh
Confidence 34455689988865543
No 135
>PF14025 DUF4241: Protein of unknown function (DUF4241)
Probab=24.03 E-value=1.6e+02 Score=30.87 Aligned_cols=42 Identities=21% Similarity=0.284 Sum_probs=34.6
Q ss_pred EEcCCCCceeEEEEEEEcCCCccccceEEEEEEeecCCCCCC
Q psy12224 595 FTAPRWPGVYTFSVCLRCDSYLGFDQMQDIKLDVKEAPEVPT 636 (904)
Q Consensus 595 F~AP~~pG~y~ytv~v~SDSYlG~Dq~~dikl~V~ea~~v~~ 636 (904)
|...-.||.|.-.+++...+.-+.+--.-.+|.+.+.+++..
T Consensus 25 ~~~~VppG~y~v~~~v~~~~~~~~~r~Aaarl~f~d~~~v~~ 66 (185)
T PF14025_consen 25 FTQTVPPGTYPVELAVAKSSDEDGGRVAAARLKFSDEPPVRW 66 (185)
T ss_pred eeEeeCCcceEEEEEEEEeecCCCcEEEEEEEEEcCCCceEE
Confidence 333334799999999999999999988889999999997753
No 136
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=23.98 E-value=1.2e+02 Score=35.00 Aligned_cols=56 Identities=14% Similarity=0.263 Sum_probs=46.1
Q ss_pred CcccC--CCCCHHHHHHhhhcccCCCCHHHHHcCCHHHHHHHHhhCCHHHHHHHHHHHccC
Q psy12224 282 PLLQL--PYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNM 340 (904)
Q Consensus 282 PLLQL--Phvtee~lk~l~~kk~~V~sL~dL~~m~~eEr~~lL~~Lse~q~~dV~kvl~~~ 340 (904)
+|-.| +.++...+++| ++.++.|+.+++..+..+...+. +++....+.+...++..
T Consensus 27 ~~~~l~~~gi~~~~i~kL--~~~g~~T~~~~~~~~~~~L~~i~-~is~~~~~~~~~~~~~~ 84 (342)
T PLN03186 27 PIEQLQASGIAALDIKKL--KDAGIHTVESLAYAPKKDLLQIK-GISEAKVEKILEAASKL 84 (342)
T ss_pred cHHHHHhCCCCHHHHHHH--HHcCCCcHHHHHhCCHHHHHHhc-CCCHHHHHHHHHHHHHh
Confidence 34444 56999999999 78899999999999999988876 48998888888877553
No 137
>PRK01216 DNA polymerase IV; Validated
Probab=23.44 E-value=1.1e+02 Score=35.20 Aligned_cols=62 Identities=10% Similarity=0.161 Sum_probs=47.2
Q ss_pred HHHHhccCCCCCCcccCCCCCHHHHHHhhhcccCCCCHHHHHcCCHHHHHHHHhhCCHHHHHHHHHHHc
Q psy12224 270 PMIVQGMWDFKNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLG 338 (904)
Q Consensus 270 QmIvQalW~~~SPLLQLPhvtee~lk~l~~kk~~V~sL~dL~~m~~eEr~~lL~~Lse~q~~dV~kvl~ 338 (904)
+.+.|.+|+ -|+..||++......+| .+.++.++.||..++..+....++ ...+..+...+.
T Consensus 169 ~~~~~~L~~--LPi~~l~giG~~~~~~L--~~~Gi~TigdL~~~~~~~L~~rfG---~~~~~~L~~~a~ 230 (351)
T PRK01216 169 EEVKRFINE--LDIADIPGIGDITAEKL--KKLGVNKLVDTLRIEFDELKGIIG---EAKAKYLFSLAR 230 (351)
T ss_pred HHHHHHHhc--CCcccccCCCHHHHHHH--HHcCCCcHHHHhcCCHHHHHHHHC---HHHHHHHHHHhC
Confidence 345566665 48999999998888999 778999999999999887776554 444556666553
No 138
>PRK14133 DNA polymerase IV; Provisional
Probab=23.25 E-value=1.1e+02 Score=34.80 Aligned_cols=61 Identities=8% Similarity=0.091 Sum_probs=46.3
Q ss_pred HHHhccCCCCCCcccCCCCCHHHHHHhhhcccCCCCHHHHHcCCHHHHHHHHhhCCHHHHHHHHHHHcc
Q psy12224 271 MIVQGMWDFKNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGN 339 (904)
Q Consensus 271 mIvQalW~~~SPLLQLPhvtee~lk~l~~kk~~V~sL~dL~~m~~eEr~~lL~~Lse~q~~dV~kvl~~ 339 (904)
.+.+.+|+ -|+..||++.....++| .+.++.++.||++++..+....++ ..+..++..+..
T Consensus 165 ~~~~~L~~--lpv~~l~gig~~~~~~L--~~~Gi~ti~dl~~l~~~~L~~rfG----~~g~~l~~~a~G 225 (347)
T PRK14133 165 MIPDILKP--LPISKVHGIGKKSVEKL--NNIGIYTIEDLLKLSREFLIEYFG----KFGVEIYERIRG 225 (347)
T ss_pred HHHHHHHh--CCccccCCCCHHHHHHH--HHcCCccHHHHhhCCHHHHHHHHh----HHHHHHHHHhCC
Confidence 44455553 59999999999999999 678999999999999888777665 234555555543
No 139
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=23.15 E-value=53 Score=40.28 Aligned_cols=16 Identities=25% Similarity=0.848 Sum_probs=11.1
Q ss_pred CCCCCChhhHHHHhhc
Q psy12224 517 ESSDDDDDDWEKYQTG 532 (904)
Q Consensus 517 ~~~~~dd~ewe~lq~~ 532 (904)
.++|+|.++|+.|..+
T Consensus 974 ~~DeE~gEDwdele~k 989 (1001)
T COG5406 974 SSDEEDGEDWDELESK 989 (1001)
T ss_pred ccccccccchhhHhhh
Confidence 3555677899887544
No 140
>smart00736 CADG Dystroglycan-type cadherin-like domains. Cadherin-homologous domains present in metazoan dystroglycans and alpha/epsilon sarcoglycans, yeast Axl2p and in a very large protein from magnetotactic bacteria. Likely to bind calcium ions.
Probab=22.76 E-value=3.5e+02 Score=24.90 Aligned_cols=49 Identities=22% Similarity=0.340 Sum_probs=34.4
Q ss_pred EEEEEeCCCCeEEeccceeeeecceeEEEEEEEcCCCCceeEEEEEEEcCCCccccceEEEEEEeecCC
Q psy12224 564 WIYISDRKSRTLLTSPYHITELVDQEQVQLKFTAPRWPGVYTFSVCLRCDSYLGFDQMQDIKLDVKEAP 632 (904)
Q Consensus 564 Wv~V~D~K~~~Ll~~p~~vt~L~~~~ev~LkF~AP~~pG~y~ytv~v~SDSYlG~Dq~~dikl~V~ea~ 632 (904)
|+-+ |.+++.|...|. ....|.|.|.|.+ +|+| |.-....+.|.|.++.
T Consensus 47 Wl~f-d~~~~~~~GtP~-----------------~~~~g~~~i~v~a-~D~~-g~~~~~~f~i~V~~~~ 95 (97)
T smart00736 47 WLSF-DSDTGTLSGTPT-----------------NSDVGSLSLKVTA-TDSS-GASASDTFTITVVNTN 95 (97)
T ss_pred eEEE-eCCCCEEEEECC-----------------CCCCcEEEEEEEE-EECC-CCEEEEEEEEEEeCCC
Confidence 4544 667777776662 1135888888766 7888 6777888999998764
No 141
>PRK02406 DNA polymerase IV; Validated
Probab=22.24 E-value=1.1e+02 Score=34.59 Aligned_cols=64 Identities=8% Similarity=-0.039 Sum_probs=49.2
Q ss_pred HHHhccCCCCCCcccCCCCCHHHHHHhhhcccCCCCHHHHHcCCHHHHHHHHhhCCHHHHHHHHHHHccCCc
Q psy12224 271 MIVQGMWDFKNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMPY 342 (904)
Q Consensus 271 mIvQalW~~~SPLLQLPhvtee~lk~l~~kk~~V~sL~dL~~m~~eEr~~lL~~Lse~q~~dV~kvl~~~P~ 342 (904)
.+.|.+|+ -|+..||++.....++| .+.++.++.||..++.......++ ..+..+...+...-.
T Consensus 160 ~~~~~L~~--lpi~~l~giG~~~~~~L--~~~Gi~ti~dl~~l~~~~L~~~fG----~~~~~l~~~a~G~d~ 223 (343)
T PRK02406 160 EVDAFLAT--LPVEKIPGVGKVTAEKL--HALGIYTCADLQKYDLAELIRHFG----KFGRRLYERARGIDE 223 (343)
T ss_pred HHHHHHHc--CCcchhcCCCHHHHHHH--HHcCCCcHHHHHhCCHHHHHHHHh----HHHHHHHHHhCCCCC
Confidence 34455554 59999999999999999 678999999999999888877765 245666666666544
No 142
>PF13446 RPT: A repeated domain in UCH-protein
Probab=22.17 E-value=1.3e+02 Score=25.69 Aligned_cols=39 Identities=10% Similarity=0.073 Sum_probs=28.5
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHcC
Q psy12224 7 TPLKPSGASEASIKKAYRKQSLILHPDKETGDEKAFMKLTKAYQALT 53 (904)
Q Consensus 7 ILGV~~~As~~eIKkAYRkLSlkyHPDKnp~~ee~F~kI~kAYevLt 53 (904)
+|||+++++...|-.+|+.... .+ +.....+.+|..++.
T Consensus 10 ~Lgi~~~~~Dd~Ii~~f~~~~~-----~~---P~~~~~~r~AL~~Ia 48 (62)
T PF13446_consen 10 ILGIDEDTDDDFIISAFQSKVN-----DD---PSQKDTLREALRVIA 48 (62)
T ss_pred HhCcCCCCCHHHHHHHHHHHHH-----cC---hHhHHHHHHHHHHHH
Confidence 8999999999999999998877 22 234445555555554
No 143
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=22.03 E-value=1.9e+02 Score=27.09 Aligned_cols=51 Identities=14% Similarity=0.248 Sum_probs=35.3
Q ss_pred CCCCCCC-HHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHcCChHHHHHhh-hcC
Q psy12224 9 LKPSGAS-EASIKKAYRKQSLILHPDKETGDEKAFMKLTKAYQALTDEESRRNFE-KYG 65 (904)
Q Consensus 9 GV~~~As-~~eIKkAYRkLSlkyHPDKnp~~ee~F~kI~kAYevLtDp~~R~~YD-~yG 65 (904)
|+++++. ..+|-+.++.+...+++ ++++.+..|.+.| +.|+.-+..|+ .++
T Consensus 51 g~~p~s~evq~l~~~~~~~~~~~~~----~~~~~~~~l~~~y--~~~~~~~~~~~~~~~ 103 (118)
T PF07739_consen 51 GVDPDSPEVQELAERWMELINQFTG----GDPELLRGLAQMY--VEDPRFAAMYDKKFG 103 (118)
T ss_dssp T--TT-HHHHHHHHHHHHHHHHSS-------HHHHHHHHHHT--TSTHHHHHHHG-GGS
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHhC----CCHHHHHHHHHHH--HcCHHHHhhccccCC
Confidence 5566544 45666777777778876 5578999999999 88999999998 554
No 144
>KOG1999|consensus
Probab=21.06 E-value=60 Score=41.63 Aligned_cols=7 Identities=57% Similarity=1.478 Sum_probs=4.1
Q ss_pred hhcccce
Q psy12224 711 CSVGRRR 717 (904)
Q Consensus 711 ~~~~~~~ 717 (904)
|..||-|
T Consensus 172 C~iG~Er 178 (1024)
T KOG1999|consen 172 CKIGRER 178 (1024)
T ss_pred eccccHH
Confidence 5666655
No 145
>KOG1991|consensus
Probab=20.90 E-value=56 Score=42.00 Aligned_cols=14 Identities=14% Similarity=0.413 Sum_probs=10.8
Q ss_pred HHHHHHHHHHhccC
Q psy12224 264 NVMKLCPMIVQGMW 277 (904)
Q Consensus 264 n~m~L~QmIvQalW 277 (904)
-+.+|||.+++..|
T Consensus 582 fA~eL~q~La~~F~ 595 (1010)
T KOG1991|consen 582 FAVELCQNLAETFL 595 (1010)
T ss_pred hHHHHHHHHHHHHH
Confidence 46778888888876
No 146
>cd03586 PolY_Pol_IV_kappa DNA Polymerase IV/Kappa. Pol IV, also known as Pol kappa, DinB, and Dpo4, is a translesion synthesis (TLS) polymerase. Translesion synthesis is a process that allows the bypass of a variety of DNA lesions. TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. Known primarily as Pol IV in prokaryotes and Pol kappa in eukaryotes, this polymerase has a propensity for generating frameshift mutations. The eukaryotic Pol kappa differs from Pol IV and Dpo4 by an N-terminal extension of ~75 residues known as the "N-clasp" region. The structure of Pol kappa shows DNA that is almost totally encircled by Pol kappa, with the N-clasp region augmenting the interactions between DNA and the polymerase. Pol kappa is more resistant than Pol eta and Pol iota to bulky guanine adducts and is efficient at catalyzing the incorporation of dCTP. Bacterial pol IV has a
Probab=20.78 E-value=2.2e+02 Score=31.74 Aligned_cols=67 Identities=12% Similarity=0.135 Sum_probs=49.4
Q ss_pred HHHhccCCCCCCcccCCCCCHHHHHHhhhcccCCCCHHHHHcCCHHHHHHHHhhCCHHHHHHHHHHHccCCceeE
Q psy12224 271 MIVQGMWDFKNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMPYVDL 345 (904)
Q Consensus 271 mIvQalW~~~SPLLQLPhvtee~lk~l~~kk~~V~sL~dL~~m~~eEr~~lL~~Lse~q~~dV~kvl~~~P~IeI 345 (904)
.+.|.+|+ -|+..||++......+| .+.++.++.||.+++.......++ ..+..+...+...-.-.+
T Consensus 163 ~~~~~L~~--lpl~~l~gig~~~~~~L--~~~Gi~ti~dl~~~~~~~L~~~~g----~~~~~l~~~~~G~~~~~v 229 (334)
T cd03586 163 DVEEFLAP--LPVRKIPGVGKVTAEKL--KELGIKTIGDLAKLDVELLKKLFG----KSGRRLYELARGIDNRPV 229 (334)
T ss_pred HHHHHHhc--CCchhhCCcCHHHHHHH--HHcCCcCHHHHHcCCHHHHHHHHh----HHHHHHHHHhCCCCCCCC
Confidence 34445553 59999999999999999 678999999999999888776543 356666666666544333
No 147
>PRK03348 DNA polymerase IV; Provisional
Probab=20.43 E-value=2e+02 Score=34.18 Aligned_cols=58 Identities=9% Similarity=0.088 Sum_probs=46.5
Q ss_pred CCCcccCCCCCHHHHHHhhhcccCCCCHHHHHcCCHHHHHHHHhhCCHHHHHHHHHHHccCCc
Q psy12224 280 KNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMPY 342 (904)
Q Consensus 280 ~SPLLQLPhvtee~lk~l~~kk~~V~sL~dL~~m~~eEr~~lL~~Lse~q~~dV~kvl~~~P~ 342 (904)
.-|+..||++.....++| .+.+|.++.||+.++..+....++ ...+..+...+.....
T Consensus 179 ~LPv~~L~GIG~~t~~~L--~~lGI~TigDLa~l~~~~L~~~fG---~~~g~~L~~~a~G~d~ 236 (454)
T PRK03348 179 PLPVRRLWGIGPVTEEKL--HRLGIETIGDLAALSEAEVANLLG---ATVGPALHRLARGIDD 236 (454)
T ss_pred hCCccccCCCCHHHHHHH--HHcCCccHHHHhcCCHHHHHHHHC---HHHHHHHHHHHcCCCC
Confidence 359999999999999999 778999999999999888777654 4456667677666544
No 148
>KOG2141|consensus
Probab=20.02 E-value=60 Score=40.50 Aligned_cols=7 Identities=57% Similarity=0.392 Sum_probs=3.6
Q ss_pred cchhhhh
Q psy12224 812 KMSIANR 818 (904)
Q Consensus 812 ~~~~~~~ 818 (904)
|||+||-
T Consensus 329 KLSdaNi 335 (822)
T KOG2141|consen 329 KLSDANI 335 (822)
T ss_pred HHHHHHH
Confidence 4555553
Done!