Query psy12224
Match_columns 904
No_of_seqs 347 out of 2113
Neff 5.3
Searched_HMMs 29240
Date Fri Aug 16 22:00:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12224.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12224hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2q0z_X Protein Pro2281; SEC63, 100.0 3.2E-58 1.1E-62 507.0 37.1 309 122-633 26-334 (339)
2 3im1_A Protein SNU246, PRE-mRN 100.0 1.2E-56 4.2E-61 492.1 33.9 306 122-629 22-328 (328)
3 4f92_B U5 small nuclear ribonu 100.0 2.9E-42 9.8E-47 443.9 35.0 303 122-627 1422-1724(1724)
4 4f92_B U5 small nuclear ribonu 100.0 1.1E-28 3.9E-33 318.1 30.3 201 122-351 591-791 (1724)
5 2zj8_A DNA helicase, putative 99.7 2.9E-17 9.8E-22 196.3 14.0 180 141-342 510-704 (720)
6 2p6r_A Afuhel308 helicase; pro 99.7 1E-17 3.5E-22 199.6 10.0 195 123-348 488-692 (702)
7 2och_A Hypothetical protein DN 99.6 3.6E-16 1.2E-20 135.7 7.8 60 7-66 13-72 (73)
8 1hdj_A Human HSP40, HDJ-1; mol 99.6 7.8E-16 2.7E-20 134.7 8.1 62 7-68 8-71 (77)
9 2va8_A SSO2462, SKI2-type heli 99.6 1.5E-15 5.1E-20 181.1 12.6 192 124-343 508-714 (715)
10 2ctp_A DNAJ homolog subfamily 99.6 9.9E-16 3.4E-20 134.4 8.0 62 7-68 12-75 (78)
11 2dn9_A DNAJ homolog subfamily 99.6 1.6E-15 5.6E-20 133.2 7.9 62 7-68 12-76 (79)
12 2o37_A Protein SIS1; HSP40, J- 99.6 1.3E-15 4.6E-20 138.0 6.5 60 7-66 13-72 (92)
13 2ej7_A HCG3 gene; HCG3 protein 99.6 3.1E-15 1.1E-19 132.3 7.7 61 7-67 14-78 (82)
14 2cug_A Mkiaa0962 protein; DNAJ 99.6 3.7E-15 1.3E-19 133.9 7.5 61 7-67 22-84 (88)
15 1wjz_A 1700030A21RIK protein; 99.5 3.3E-15 1.1E-19 135.4 5.3 61 7-67 21-90 (94)
16 1bq0_A DNAJ, HSP40; chaperone, 99.5 5.4E-15 1.8E-19 136.6 6.2 64 7-70 8-74 (103)
17 2ctw_A DNAJ homolog subfamily 99.5 8.3E-15 2.8E-19 136.9 7.5 60 7-66 22-84 (109)
18 2ctr_A DNAJ homolog subfamily 99.5 8E-15 2.7E-19 131.8 6.8 61 7-67 12-74 (88)
19 2lgw_A DNAJ homolog subfamily 99.5 3.8E-15 1.3E-19 137.1 4.5 68 1-68 1-72 (99)
20 2yua_A Williams-beuren syndrom 99.5 1E-14 3.5E-19 133.9 7.2 60 7-66 22-84 (99)
21 2ctq_A DNAJ homolog subfamily 99.5 8.4E-15 2.9E-19 137.4 6.3 60 7-66 25-87 (112)
22 2dmx_A DNAJ homolog subfamily 99.5 1E-14 3.4E-19 132.0 6.6 62 7-68 14-79 (92)
23 2qsa_A DNAJ homolog DNJ-2; J-d 99.5 2.2E-14 7.7E-19 133.6 4.2 61 7-67 20-87 (109)
24 1gh6_A Large T antigen; tumor 99.4 1.7E-14 5.8E-19 136.1 1.6 59 7-66 13-73 (114)
25 1faf_A Large T antigen; J doma 99.4 5.4E-14 1.9E-18 124.3 4.4 59 7-67 16-76 (79)
26 3apq_A DNAJ homolog subfamily 99.4 1.1E-13 3.9E-18 140.7 6.6 63 7-69 7-72 (210)
27 2l6l_A DNAJ homolog subfamily 99.4 1.3E-13 4.6E-18 135.9 4.8 60 7-66 15-83 (155)
28 2ys8_A RAB-related GTP-binding 99.4 1.6E-13 5.6E-18 123.9 3.7 53 7-59 32-86 (90)
29 2pf4_E Small T antigen; PP2A, 99.4 5.5E-14 1.9E-18 141.5 0.6 59 7-66 16-76 (174)
30 1fpo_A HSC20, chaperone protei 99.3 9.9E-13 3.4E-17 132.2 6.5 60 7-66 6-75 (171)
31 3lz8_A Putative chaperone DNAJ 99.3 1.5E-13 5E-18 151.3 0.0 61 7-67 33-95 (329)
32 3hho_A CO-chaperone protein HS 99.3 1.3E-12 4.4E-17 131.7 5.5 60 7-66 9-78 (174)
33 2qwo_B Putative tyrosine-prote 99.3 4.6E-13 1.6E-17 121.8 1.8 48 7-54 38-91 (92)
34 1iur_A KIAA0730 protein; DNAJ 99.3 7.4E-13 2.5E-17 119.5 2.2 52 7-58 21-76 (88)
35 2guz_A Mitochondrial import in 99.3 1.2E-12 4.1E-17 113.3 2.3 51 7-58 19-70 (71)
36 3bvo_A CO-chaperone protein HS 99.2 5.8E-12 2E-16 130.2 6.7 58 7-64 48-115 (207)
37 3uo3_A J-type CO-chaperone JAC 99.2 2E-12 7E-17 131.1 2.4 58 7-64 16-80 (181)
38 1n4c_A Auxilin; four helix bun 99.2 2.8E-12 9.7E-17 129.9 2.2 55 7-61 122-182 (182)
39 3ag7_A Putative uncharacterize 99.2 7.2E-12 2.5E-16 116.8 2.4 49 7-56 46-104 (106)
40 3apo_A DNAJ homolog subfamily 99.1 1.9E-11 6.5E-16 147.1 0.9 63 7-69 26-91 (780)
41 2guz_B Mitochondrial import in 98.3 3.8E-07 1.3E-11 77.9 4.1 48 7-55 9-59 (65)
42 2y4t_A DNAJ homolog subfamily 98.2 5.2E-07 1.8E-11 97.8 4.3 57 7-63 387-449 (450)
43 1wcn_A Transcription elongatio 90.2 0.28 9.6E-06 42.2 4.4 57 281-340 7-63 (70)
44 2kz3_A Putative uncharacterize 83.7 2 7E-05 38.1 6.3 49 286-337 9-57 (83)
45 2ca6_A RAN GTPase-activating p 65.6 1.7 5.7E-05 47.1 0.9 9 336-344 211-219 (386)
46 1z00_B DNA repair endonuclease 59.2 10 0.00036 33.5 4.7 54 280-339 17-71 (84)
47 2i1q_A DNA repair and recombin 58.5 8.5 0.00029 41.0 4.9 55 282-339 4-58 (322)
48 1z3e_B DNA-directed RNA polyme 58.3 16 0.00055 31.5 5.6 56 281-340 9-64 (73)
49 2a1j_A DNA repair endonuclease 54.4 9.5 0.00033 31.7 3.4 54 280-339 3-57 (63)
50 3k4g_A DNA-directed RNA polyme 53.2 20 0.00069 32.0 5.5 57 281-341 12-68 (86)
51 1pzn_A RAD51, DNA repair and r 49.1 26 0.0009 38.1 6.9 56 281-339 35-90 (349)
52 4fp9_B Mterf domain-containing 47.9 3.9 0.00013 45.0 0.0 13 222-234 129-141 (335)
53 3gfk_B DNA-directed RNA polyme 45.8 17 0.00059 31.9 3.8 56 281-340 16-71 (79)
54 2wnv_B C1Q chain B, complement 41.4 19 0.00065 34.1 3.7 21 593-614 41-61 (136)
55 2wnv_A C1Q chain A, complement 37.0 25 0.00084 33.2 3.7 21 593-614 38-58 (134)
56 2wnv_C C1Q chain C, complement 35.3 25 0.00087 33.0 3.5 20 594-614 43-62 (131)
57 1coo_A RNA polymerase alpha su 34.1 32 0.0011 31.4 3.8 55 282-340 25-79 (98)
58 1u9l_A Transcription elongatio 31.0 19 0.00066 30.8 1.7 54 283-339 8-61 (70)
59 2z43_A DNA repair and recombin 29.6 11 0.00038 40.4 0.0 56 281-339 12-67 (324)
60 2yrl_A KIAA1837 protein; PKD d 28.9 1.2E+02 0.0042 27.1 6.8 39 591-632 59-97 (102)
61 4aco_A Centromere DNA-binding 27.9 13 0.00043 45.3 0.0 19 279-297 480-499 (956)
62 2ayu_A Nucleosome assembly pro 27.7 11 0.00039 42.5 -0.3 9 289-297 185-193 (417)
63 2lpe_A Kinase suppressor of RA 25.9 1.3E+02 0.0045 29.4 6.7 57 280-340 77-144 (149)
64 4fp9_B Mterf domain-containing 25.4 15 0.00051 40.4 0.0 14 222-235 94-107 (335)
65 3mab_A Uncharacterized protein 24.9 54 0.0018 29.6 3.6 37 280-318 3-39 (93)
66 1b22_A DNA repair protein RAD5 22.2 16 0.00055 34.1 -0.4 58 281-341 23-82 (114)
67 1t0f_C Protein E, transposon T 20.5 37 0.0013 27.9 1.4 32 832-868 15-48 (54)
68 3cvb_A Plastocyanin; cupredoxi 20.0 51 0.0017 28.7 2.4 25 585-609 66-90 (105)
No 1
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=100.00 E-value=3.2e-58 Score=506.99 Aligned_cols=309 Identities=28% Similarity=0.487 Sum_probs=261.8
Q ss_pred ccccchhhhhhhhcccCccccHHHHHHHHhcccccccccccccccCCchhhhHHHHHHhcCCCcccCCCCCCccchhhhH
Q psy12224 122 KVLLETINFYYAFFQITPHMALKRVLMILGASLEFDRRFNSEIIERPSDEIEVPQLIRQIPNLGEKNRERPLYHKYSIKA 201 (904)
Q Consensus 122 ~Vl~dTi~~Fyy~~~ltp~mt~~~LL~ILS~A~EF~~~~n~eI~vR~~E~~eL~kL~k~lp~l~~k~Ke~~~~~~~~~KA 201 (904)
.|.++|++.| +.+++++++..+||++||.|.||+ ++++|++|+.+|.+|.++++.... ......++.||
T Consensus 26 Yi~~~T~~~f--~~~l~~~~~~~~lL~ils~a~EF~-----~i~vR~~E~~~l~~L~~~~~~~~~----~~~~~~~~~K~ 94 (339)
T 2q0z_X 26 YINYTTIELF--SMSLNAKTKVRGLIEIISNAAEYE-----NIPIRHHEDNLLRQLAQKVPHKLN----NPKFNDPHVKT 94 (339)
T ss_dssp -------------------CCHHHHHHHHHTSGGGT-----TCCCCTTCHHHHHHHHHHSSSCCS----SCCTTCHHHHH
T ss_pred CCCHHHHHHH--HHHhcccCCHHHHHHHHhchHHHh-----cCCCCcchHHHHHHHHHhCCCccc----cCCCCCHHHHH
Confidence 4778899999 668889999999999999999999 999999999999999999876431 12234678999
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHhhccCcccchHHHHHHHHHHHHHHHhccCCCCC
Q psy12224 202 RALIYAHLSNMQLTSETLEADRMYIVKKCPYLLQEMVTCISQLILLAYAQRVPRLIHIETLENVMKLCPMIVQGMWDFKN 281 (904)
Q Consensus 202 ~iLLqAHLsRi~Lp~~dL~~D~~~IL~~apRLLqAMvdIa~~lg~la~~rr~~~~p~L~taln~m~L~QmIvQalW~~~S 281 (904)
++||||||+|++++ .+|..|+.+|+++|+||++||++||+.+| | +.+++++|+|+|||+||+|++++
T Consensus 95 ~lLLqa~isr~~l~-~~l~~D~~~V~~~a~RLl~al~di~~~~g-------~-----~~~~~~~l~L~q~i~q~~w~~~~ 161 (339)
T 2q0z_X 95 NLLLQAHLSRMQLS-AELQSDTEEILSKAIRLIQACVDVLSSNG-------W-----LSPALAAMELAQMVTQAMWSKDS 161 (339)
T ss_dssp HHHHHHHHTTCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-------B-----HHHHHHHHHHHHHHHHTCCTTSC
T ss_pred HHHHHHHHcCCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHcC-------C-----HHHHHHHHHHHHHHHHhcCCCCC
Confidence 99999999999998 59999999999999999999999997654 3 77899999999999999999999
Q ss_pred CcccCCCCCHHHHHHhhhcccCCCCHHHHHcCCHHHHHHHHhhCCHHHHHHHHHHHccCCceeEEEeEEEccCCCCcccc
Q psy12224 282 PLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMPYVDLHVQPEVIDDEATTEYT 361 (904)
Q Consensus 282 PLLQLPhvtee~lk~l~~kk~~V~sL~dL~~m~~eEr~~lL~~Lse~q~~dV~kvl~~~P~IeIea~~~V~deed~~~It 361 (904)
||+|||||+.+.++++ .+.++.++++|++|++++++.+|+ +++.++++|.++|++||.|+|+ ++|.++ +.|+
T Consensus 162 pL~Qlp~i~~~~~~~l--~~~~i~s~~~l~~~~~~e~~~ll~-l~~~~~~~i~~~~~~~P~l~v~--~~v~~~---~~i~ 233 (339)
T 2q0z_X 162 YLKQLPHFTSEHIKRC--TDKGVESVFDIMEMEDEERNALLQ-LTDSQIADVARFCNRYPNIELS--YEVVDK---DSIR 233 (339)
T ss_dssp GGGGSTTCCHHHHHHH--HHTTCCSHHHHHHSCHHHHHHHHC-CCHHHHHHHHHHHTTSCCEEEE--EEETTG---GGCB
T ss_pred ceecCCCCCHHHHHHH--HhcCCCCHHHHHhCCHHHHHHHHC-CCHHHHHHHHHHHHhCCcEEEE--EEEccC---cccc
Confidence 9999999999999999 556789999999999999999997 9999999999999999999997 457665 4799
Q ss_pred cCceEEEEEEEEEccCCcccCCccccccccCCCCCCCCchhhhccCCCCCcccccccccccccccchhccccCCCccccc
Q psy12224 362 AGAIITVTCTLMRKPMSVLFGDDTIKVQFLEPSKEGEGEIEEEEEKPNGTITPVVNKEKQQTHRPVWMKNKKGGKKKKFT 441 (904)
Q Consensus 362 pGsiVTltV~L~R~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~W~k~kk~~k~~~~~ 441 (904)
+|++++|+|+|+|..
T Consensus 234 ~~~~~~l~v~l~~~~----------------------------------------------------------------- 248 (339)
T 2q0z_X 234 SGGPVVVLVQLEREE----------------------------------------------------------------- 248 (339)
T ss_dssp TTSEEEEEEEEEECS-----------------------------------------------------------------
T ss_pred CCCcEEEEEEEEECC-----------------------------------------------------------------
Confidence 999999999999831
Q ss_pred ccccCCccccccccccccccccCCchhhhccccCCcccccccCCccccccccccccchhhhhccccccccCCCCCCCCCC
Q psy12224 442 KNKHDKKSSGQKKITNTVEQTEAPADVAKVEKKDTPEESKDVSSESEEESDLSDVENDEVVDKKEKNEDSNNKSEESSDD 521 (904)
Q Consensus 442 ~~~~~~k~~~~k~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (904)
+
T Consensus 249 ---------------------------------~---------------------------------------------- 249 (339)
T 2q0z_X 249 ---------------------------------E---------------------------------------------- 249 (339)
T ss_dssp ---------------------------------S----------------------------------------------
T ss_pred ---------------------------------C----------------------------------------------
Confidence 0
Q ss_pred ChhhHHHHhhcccccccccccCCCCCcceeCCCCCCCCCcceEEEEEeCCCCeEEeccceeeeecceeEEEEEEEcCCCC
Q psy12224 522 DDDDWEKYQTGLNKRDKVLEGRSKQSHSVHCPRFPEDKQEFWWIYISDRKSRTLLTSPYHITELVDQEQVQLKFTAPRWP 601 (904)
Q Consensus 522 dd~ewe~lq~~~~kre~~le~ks~~sh~VhaPyFP~eK~E~WWv~V~D~K~~~Ll~~p~~vt~L~~~~ev~LkF~AP~~p 601 (904)
| .+.|||||||+.|.|+|||+|+|.++++|++.. ..++....+++|+|++| .|
T Consensus 250 ----~--------------------~~~v~aP~fp~~k~e~wwi~v~d~~~~~ll~~~--r~~l~~~~~~~l~f~~P-~~ 302 (339)
T 2q0z_X 250 ----V--------------------TGPVIAPLFPQKREEGWWVVIGDAKSNSLISIK--RLTLQQKAKVKLDFVAP-AT 302 (339)
T ss_dssp ----C--------------------CSSCCCTTCSSCCCCCEEEEEEETTTTEEEEEE--EECCSSEEEEEEEEECC-SS
T ss_pred ----C--------------------CCceeCCCCCCCCCCcEEEEEEECCCCEEEEEE--EEecccceEEEEEEECC-CC
Confidence 0 124999999999999999999999999999987 45677788899999999 89
Q ss_pred ceeEEEEEEEcCCCccccceEEEEEEeecCCC
Q psy12224 602 GVYTFSVCLRCDSYLGFDQMQDIKLDVKEAPE 633 (904)
Q Consensus 602 G~y~ytv~v~SDSYlG~Dq~~dikl~V~ea~~ 633 (904)
|.|+|+|+|+||||+|||++++|+|+|.+|+.
T Consensus 303 g~~~~~v~~vSD~ylG~D~~~~i~~~v~~~~~ 334 (339)
T 2q0z_X 303 GAHNYTLYFMSDAYMGCDQEYKFSVDVKEAET 334 (339)
T ss_dssp EEEEEEEEEEESSCSSCCEEEEEEEEEBCC--
T ss_pred CCeeEEEEEEcccccCcceEEEEEEEEecCcc
Confidence 99999999999999999999999999998763
No 2
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=100.00 E-value=1.2e-56 Score=492.13 Aligned_cols=306 Identities=25% Similarity=0.416 Sum_probs=271.8
Q ss_pred ccccchhhhhhhhcccCccccHHHHHHHHhcccccccccccccccCCchhhhHHHHHHhcCCCcccCCCCCCccchhhhH
Q psy12224 122 KVLLETINFYYAFFQITPHMALKRVLMILGASLEFDRRFNSEIIERPSDEIEVPQLIRQIPNLGEKNRERPLYHKYSIKA 201 (904)
Q Consensus 122 ~Vl~dTi~~Fyy~~~ltp~mt~~~LL~ILS~A~EF~~~~n~eI~vR~~E~~eL~kL~k~lp~l~~k~Ke~~~~~~~~~KA 201 (904)
.|.+.|++.| +.+++++++..++|++||.|.||+ ++++|++|+.+|.+|.+.++.... .......++.|+
T Consensus 22 Yi~~~T~~~f--~~~l~~~~~~~~lL~ils~a~Ef~-----~i~vR~~E~~~l~~L~~~~~~~~~---~~~~~~~~~~K~ 91 (328)
T 3im1_A 22 GVSFFTIQSF--VSSLSNTSTLKNMLYVLSTAVEFE-----SVPLRKGDRALLVKLSKRLPLRFP---EHTSSGSVSFKV 91 (328)
T ss_dssp CCCHHHHHHH--HHHCCTTCCHHHHHHHHHTCGGGG-----GSCCCTTHHHHHHHHHTTSSSCCC---TTSCSSSHHHHH
T ss_pred CCCHHHHHHH--HHHhcccCCHHHHHHHhccHHHHH-----hcccCcchHHHHHHHHHhCCCccc---ccCCCCCHHHHH
Confidence 5788999999 667889999999999999999999 999999999999999999876421 012234689999
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHhhccCcccchHHHHHHHHHHHHHHHhccCCCCC
Q psy12224 202 RALIYAHLSNMQLTSETLEADRMYIVKKCPYLLQEMVTCISQLILLAYAQRVPRLIHIETLENVMKLCPMIVQGMWDFKN 281 (904)
Q Consensus 202 ~iLLqAHLsRi~Lp~~dL~~D~~~IL~~apRLLqAMvdIa~~lg~la~~rr~~~~p~L~taln~m~L~QmIvQalW~~~S 281 (904)
++||||||+|++++. +|..|+.+|+++|+||++||++||+..| | +. ++++|+|+|||+||+|+.++
T Consensus 92 ~lLLqa~isr~~l~~-~l~~D~~~V~~~a~rLl~al~di~~~~g-------~-----~~-~~~~l~L~q~i~q~~w~~~~ 157 (328)
T 3im1_A 92 FLLLQAYFSRLELPV-DFQNDLKDILEKVVPLINVVVDILSANG-------Y-----LN-ATTAMDLAQMLIQGVWDVDN 157 (328)
T ss_dssp HHHHHHHHHTCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHTT-------B-----TT-HHHHHHHHHHHHHTSCTTSC
T ss_pred HHHHHHHHCCCCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHcCC-------c-----HH-HHHHHHHHHHHHhhcCCCCC
Confidence 999999999999987 8999999999999999999999997654 3 67 88999999999999999999
Q ss_pred CcccCCCCCHHHHHHhhhcccCCCCHHHHHcCCHHHHHHHHhhCCHHHHHHHHHHHccCCceeEEEeEEEccCCCCcccc
Q psy12224 282 PLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMPYVDLHVQPEVIDDEATTEYT 361 (904)
Q Consensus 282 PLLQLPhvtee~lk~l~~kk~~V~sL~dL~~m~~eEr~~lL~~Lse~q~~dV~kvl~~~P~IeIea~~~V~deed~~~It 361 (904)
||+|||||+.+.+++| .+.++.++++|+++++++++.+|+ +++.++++++++|++||.|+|+ ++|.|+ ..|+
T Consensus 158 pL~Qlp~i~~~~~~~l--~~~~i~s~~~l~~~~~~e~~~ll~-~~~~~~~~v~~~~~~~P~l~v~--~~v~~~---~~i~ 229 (328)
T 3im1_A 158 PLRQIPHFNNKILEKC--KEINVETVYDIMALEDEERDEILT-LTDSQLAQVAAFVNNYPNVELT--YSLNNS---DSLI 229 (328)
T ss_dssp GGGGSTTCCHHHHHHH--HHTTCCSHHHHHHSCHHHHHHHCC-CCHHHHHHHHHHHHHCCCEEEE--EEETTG---GGCC
T ss_pred ceeCCCCCCHHHHHHH--HhCCCCCHHHHhcCCHHHHHhHhC-CCHHHHHHHHHHHHhCCCEEEE--EEecCC---Cccc
Confidence 9999999999999999 567899999999999999999884 8999999999999999999998 456665 4799
Q ss_pred cCceEEEEEEEEEccCCcccCCccccccccCCCCCCCCchhhhccCCCCCcccccccccccccccchhccccCCCccccc
Q psy12224 362 AGAIITVTCTLMRKPMSVLFGDDTIKVQFLEPSKEGEGEIEEEEEKPNGTITPVVNKEKQQTHRPVWMKNKKGGKKKKFT 441 (904)
Q Consensus 362 pGsiVTltV~L~R~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~W~k~kk~~k~~~~~ 441 (904)
+|++++|+|+|+|... |
T Consensus 230 ~~~~~~l~v~l~~~~~--------------------------------------------------~------------- 246 (328)
T 3im1_A 230 SGVKQKITIQLTRDVE--------------------------------------------------P------------- 246 (328)
T ss_dssp TTSEEEEEEEEEESSC--------------------------------------------------C-------------
T ss_pred CCCeEEEEEEEEECCC--------------------------------------------------C-------------
Confidence 9999999999999420 0
Q ss_pred ccccCCccccccccccccccccCCchhhhccccCCcccccccCCccccccccccccchhhhhccccccccCCCCCCCCCC
Q psy12224 442 KNKHDKKSSGQKKITNTVEQTEAPADVAKVEKKDTPEESKDVSSESEEESDLSDVENDEVVDKKEKNEDSNNKSEESSDD 521 (904)
Q Consensus 442 ~~~~~~k~~~~k~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (904)
+
T Consensus 247 ---------------------------------~---------------------------------------------- 247 (328)
T 3im1_A 247 ---------------------------------E---------------------------------------------- 247 (328)
T ss_dssp ---------------------------------S----------------------------------------------
T ss_pred ---------------------------------C----------------------------------------------
Confidence 0
Q ss_pred ChhhHHHHhhcccccccccccCCCCCcceeCCCCCCCCCcceEEEEEeCCCCeEEeccceeeeec-ceeEEEEEEEcCCC
Q psy12224 522 DDDDWEKYQTGLNKRDKVLEGRSKQSHSVHCPRFPEDKQEFWWIYISDRKSRTLLTSPYHITELV-DQEQVQLKFTAPRW 600 (904)
Q Consensus 522 dd~ewe~lq~~~~kre~~le~ks~~sh~VhaPyFP~eK~E~WWv~V~D~K~~~Ll~~p~~vt~L~-~~~ev~LkF~AP~~ 600 (904)
...|||||||..|.|+|||+|+|.++++|++.++ .++. ...+++++|++|.
T Consensus 248 -------------------------~~~~~ap~fp~~k~e~ww~~v~d~~~~~l~~~kr--~~~~~~~~~~~~~f~~p~- 299 (328)
T 3im1_A 248 -------------------------NLQVTSEKYPFDKLESWWLVLGEVSKKELYAIKK--VTLNKETQQYELEFDTPT- 299 (328)
T ss_dssp -------------------------CCBCCCSSCCBCCBCCEEEEEEEGGGTEEEEEEE--ECCCSSEEEEEEEEECCC-
T ss_pred -------------------------CCcEECCCCCCCccCCEEEEEEECCCCeEEEEee--ecccccceEEEEEEEcCC-
Confidence 0249999999999999999999999999999884 4454 4789999999997
Q ss_pred CceeEEEEEEEcCCCccccceEEEEEEee
Q psy12224 601 PGVYTFSVCLRCDSYLGFDQMQDIKLDVK 629 (904)
Q Consensus 601 pG~y~ytv~v~SDSYlG~Dq~~dikl~V~ 629 (904)
+|.|+|+|+++||||+|||++++|+|+|.
T Consensus 300 ~g~~~~~v~~vsD~ylG~d~~~~~~l~V~ 328 (328)
T 3im1_A 300 SGKHNLTIWCVCDSYLDADKELSFEINVK 328 (328)
T ss_dssp SEEEEEEEEEEESSCSSCCEEEEEEEEEC
T ss_pred CCcEEEEEEEEecCCcceeEEEEEEEEeC
Confidence 59999999999999999999999999984
No 3
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=2.9e-42 Score=443.93 Aligned_cols=303 Identities=27% Similarity=0.481 Sum_probs=269.5
Q ss_pred ccccchhhhhhhhcccCccccHHHHHHHHhcccccccccccccccCCchhhhHHHHHHhcCCCcccCCCCCCccchhhhH
Q psy12224 122 KVLLETINFYYAFFQITPHMALKRVLMILGASLEFDRRFNSEIIERPSDEIEVPQLIRQIPNLGEKNRERPLYHKYSIKA 201 (904)
Q Consensus 122 ~Vl~dTi~~Fyy~~~ltp~mt~~~LL~ILS~A~EF~~~~n~eI~vR~~E~~eL~kL~k~lp~l~~k~Ke~~~~~~~~~KA 201 (904)
.|.+.|+..| ...+++.+++.++|++||.|.||. ++++|++|+..+.+|.+.+|.... ......++.|+
T Consensus 1422 yi~~~t~~~~--~~~l~~~~~~~~~L~il~~a~ef~-----~i~~R~~E~~~l~~l~~~~~~~~~----~~~~~~~~~K~ 1490 (1724)
T 4f92_B 1422 YINYTTIELF--SMSLNAKTKVRGLIEIISNAAEYE-----NIPIRHHEDNLLRQLAQKVPHKLN----NPKFNDPHVKT 1490 (1724)
T ss_dssp TCCHHHHHHH--HHHCCTTCCHHHHHHHHHTSGGGT-----TCCCCTTHHHHHHHHHHHSSSCCS----SCCTTCHHHHH
T ss_pred CCCHHHHHHH--HHhccccCCHHHHHHHhcCCcccc-----cccccccHHHHHHHHHhhCCCCCC----ccccCCHHHHH
Confidence 4667788888 557788999999999999999999 999999999999999999886432 23345788999
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHhhccCcccchHHHHHHHHHHHHHHHhccCCCCC
Q psy12224 202 RALIYAHLSNMQLTSETLEADRMYIVKKCPYLLQEMVTCISQLILLAYAQRVPRLIHIETLENVMKLCPMIVQGMWDFKN 281 (904)
Q Consensus 202 ~iLLqAHLsRi~Lp~~dL~~D~~~IL~~apRLLqAMvdIa~~lg~la~~rr~~~~p~L~taln~m~L~QmIvQalW~~~S 281 (904)
++||||||+|++|| .+|..|+..|+++|.||++||+++|..+|| +.++.++|+|+|||.||+|+..+
T Consensus 1491 ~lLlqa~~~r~~l~-~~~~~D~~~i~~~~~rl~~a~~d~~~~~g~------------~~~~~~~~~l~q~l~~~~w~~~~ 1557 (1724)
T 4f92_B 1491 NLLLQAHLSRMQLS-AELQSDTEEILSKAIRLIQACVDVLSSNGW------------LSPALAAMELAQMVTQAMWSKDS 1557 (1724)
T ss_dssp HHHHHHHHTTCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTB------------HHHHHHHHHHHHHHHTTCCTTSC
T ss_pred HHHHHHHHCCCcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------------HHHHHHHHHHHHHHHhCCCcCCc
Confidence 99999999999997 489999999999999999999999987754 66889999999999999999999
Q ss_pred CcccCCCCCHHHHHHhhhcccCCCCHHHHHcCCHHHHHHHHhhCCHHHHHHHHHHHccCCceeEEEeEEEccCCCCcccc
Q psy12224 282 PLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMPYVDLHVQPEVIDDEATTEYT 361 (904)
Q Consensus 282 PLLQLPhvtee~lk~l~~kk~~V~sL~dL~~m~~eEr~~lL~~Lse~q~~dV~kvl~~~P~IeIea~~~V~deed~~~It 361 (904)
||+|||||+...+++| .+.++.|+.+|++++++++..+|+ +++.++.+|.++|++||.|+|+++ +.+. ..+.
T Consensus 1558 ~L~qip~i~~~~ar~l--~~~gi~t~~dl~~~~~~~~~~ll~-~~~~~~~~i~~~~~~~P~i~~~~~--~~~~---~~~~ 1629 (1724)
T 4f92_B 1558 YLKQLPHFTSEHIKRC--TDKGVESVFDIMEMEDEERNALLQ-LTDSQIADVARFCNRYPNIELSYE--VVDK---DSIR 1629 (1724)
T ss_dssp GGGGSTTCCHHHHHHH--HHHTCCSHHHHHSSCHHHHTTSSC-CCHHHHHHHHHHHHHSCCEEEEEE--EETS---SSCC
T ss_pred CEecCCCCCHHHHHHH--HHCCCCCHHHHHhCCHHHHHHHHC-CChHHHHHHHHHHHhCCceEEEEE--EecC---cccc
Confidence 9999999999999999 677899999999999999999885 899999999999999999999854 5443 3688
Q ss_pred cCceEEEEEEEEEccCCcccCCccccccccCCCCCCCCchhhhccCCCCCcccccccccccccccchhccccCCCccccc
Q psy12224 362 AGAIITVTCTLMRKPMSVLFGDDTIKVQFLEPSKEGEGEIEEEEEKPNGTITPVVNKEKQQTHRPVWMKNKKGGKKKKFT 441 (904)
Q Consensus 362 pGsiVTltV~L~R~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~W~k~kk~~k~~~~~ 441 (904)
+|..++|+|+|+|..-
T Consensus 1630 ~~~~~~~~v~~~~~~~---------------------------------------------------------------- 1645 (1724)
T 4f92_B 1630 SGGPVVVLVQLEREEE---------------------------------------------------------------- 1645 (1724)
T ss_dssp TTSEEEEEEEEEESSC----------------------------------------------------------------
T ss_pred CCCeEEEEEEEEecCC----------------------------------------------------------------
Confidence 9999999999998310
Q ss_pred ccccCCccccccccccccccccCCchhhhccccCCcccccccCCccccccccccccchhhhhccccccccCCCCCCCCCC
Q psy12224 442 KNKHDKKSSGQKKITNTVEQTEAPADVAKVEKKDTPEESKDVSSESEEESDLSDVENDEVVDKKEKNEDSNNKSEESSDD 521 (904)
Q Consensus 442 ~~~~~~k~~~~k~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (904)
.
T Consensus 1646 ---------------------------------~---------------------------------------------- 1646 (1724)
T 4f92_B 1646 ---------------------------------V---------------------------------------------- 1646 (1724)
T ss_dssp ---------------------------------C----------------------------------------------
T ss_pred ---------------------------------C----------------------------------------------
Confidence 0
Q ss_pred ChhhHHHHhhcccccccccccCCCCCcceeCCCCCCCCCcceEEEEEeCCCCeEEeccceeeeecceeEEEEEEEcCCCC
Q psy12224 522 DDDDWEKYQTGLNKRDKVLEGRSKQSHSVHCPRFPEDKQEFWWIYISDRKSRTLLTSPYHITELVDQEQVQLKFTAPRWP 601 (904)
Q Consensus 522 dd~ewe~lq~~~~kre~~le~ks~~sh~VhaPyFP~eK~E~WWv~V~D~K~~~Ll~~p~~vt~L~~~~ev~LkF~AP~~p 601 (904)
...||||+||+.|.|+||++|||.+++.|+++++ .++.....++|.|++| .+
T Consensus 1647 -------------------------~~~~~~~~~p~~k~e~w~~vvg~~~~~~l~~~kr--~~~~~~~~~~l~f~~p-~~ 1698 (1724)
T 4f92_B 1647 -------------------------TGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKR--LTLQQKAKVKLDFVAP-AT 1698 (1724)
T ss_dssp -------------------------CSCCCCTTSCSCCCCCEEEEEEETTTTEEEEEEE--ECCSSEEEEEEEEECC-SS
T ss_pred -------------------------CCeeecCCCCCCCccCEEEEEEECCCCeEEEEEE--EecCCCceEEEEEEeC-CC
Confidence 0138999999999999999999999999999984 5678888899999999 57
Q ss_pred ceeEEEEEEEcCCCccccceEEEEEE
Q psy12224 602 GVYTFSVCLRCDSYLGFDQMQDIKLD 627 (904)
Q Consensus 602 G~y~ytv~v~SDSYlG~Dq~~dikl~ 627 (904)
|.+.|+||++||||+||||++.|.++
T Consensus 1699 g~~~~~~~~~~d~y~g~d~~~~~~~~ 1724 (1724)
T 4f92_B 1699 GAHNYTLYFMSDAYMGCDQEYKFSVD 1724 (1724)
T ss_dssp SCEEEEEEEEESSCSSCCEEEEEEEC
T ss_pred CceeEEEEEEecCccccceeEEEecC
Confidence 99999999999999999999999874
No 4
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.96 E-value=1.1e-28 Score=318.12 Aligned_cols=201 Identities=19% Similarity=0.333 Sum_probs=179.5
Q ss_pred ccccchhhhhhhhcccCccccHHHHHHHHhcccccccccccccccCCchhhhHHHHHHhcCCCcccCCCCCCccchhhhH
Q psy12224 122 KVLLETINFYYAFFQITPHMALKRVLMILGASLEFDRRFNSEIIERPSDEIEVPQLIRQIPNLGEKNRERPLYHKYSIKA 201 (904)
Q Consensus 122 ~Vl~dTi~~Fyy~~~ltp~mt~~~LL~ILS~A~EF~~~~n~eI~vR~~E~~eL~kL~k~lp~l~~k~Ke~~~~~~~~~KA 201 (904)
.|.+.|+..| +..+.+.++..+||.+||.|.||. ++++|++|..+|.+|.+.++.... .....++.|+
T Consensus 591 yi~~~t~~~~--~~~l~~~~~~~~ll~~is~s~ef~-----~i~~R~~E~~~l~~l~~~~~~~~~-----~~~~~~~~Kv 658 (1724)
T 4f92_B 591 YITNDTVQTY--NQLLKPTLSEIELFRVFSLSSEFK-----NITVREEEKLELQKLLERVPIPVK-----ESIEEPSAKI 658 (1724)
T ss_dssp TCCHHHHHHH--HHHCCTTCCHHHHHHHHHTCGGGT-----TCCCCGGGHHHHHHHHHHSSSCCC-----SCCSSHHHHH
T ss_pred cCCHHHHHHH--HhhcCCCCCHHHHHHHHhCChhhc-----cCCcCHHHHHHHHHHHhcCCCCcC-----CCCCChHHHH
Confidence 4667788888 667789999999999999999999 999999999999999998876431 2345678999
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHhhccCcccchHHHHHHHHHHHHHHHhccCCCCC
Q psy12224 202 RALIYAHLSNMQLTSETLEADRMYIVKKCPYLLQEMVTCISQLILLAYAQRVPRLIHIETLENVMKLCPMIVQGMWDFKN 281 (904)
Q Consensus 202 ~iLLqAHLsRi~Lp~~dL~~D~~~IL~~apRLLqAMvdIa~~lg~la~~rr~~~~p~L~taln~m~L~QmIvQalW~~~S 281 (904)
++||||||+|++++.++|..|+.+|++++.||++||++||... +| ...+.+++.||+||.+++|++.+
T Consensus 659 ~~Llq~~i~~~~~~~~~l~~D~~~i~~~a~ri~ra~~ei~~~~-------~~-----~~~~~~~l~l~k~i~~~~w~~~~ 726 (1724)
T 4f92_B 659 NVLLQAFISQLKLEGFALMADMVYVTQLAGRLMRAIFEIVLNR-------GW-----AQLTDKTLNLCKMIDKRMWQSMC 726 (1724)
T ss_dssp HHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TB-----HHHHHHHHHHHHHHHHTSCTTSC
T ss_pred HHHHHHHHcCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHc-------CC-----HHHHHHHHHHHHHHHhCCCCCCC
Confidence 9999999999999999999999999999999999999999654 44 67899999999999999999999
Q ss_pred CcccCCCCCHHHHHHhhhcccCCCCHHHHHcCCHHHHHHHHhhCCHHHHHHHHHHHccCCceeEEEeEEE
Q psy12224 282 PLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMPYVDLHVQPEV 351 (904)
Q Consensus 282 PLLQLPhvtee~lk~l~~kk~~V~sL~dL~~m~~eEr~~lL~~Lse~q~~dV~kvl~~~P~IeIea~~~V 351 (904)
||+|||+++...+++++ +.++ ++.+|.+|++.+++.+++ ++..+..|.+.+++||.++|++.++.
T Consensus 727 ~L~q~~~i~~~~~~~l~--~~~~-~~~~l~~~~~~~l~~~~~--~~~~g~~i~~~~~~~P~~~~~~~~~p 791 (1724)
T 4f92_B 727 PLRQFRKLPEEVVKKIE--KKNF-PFERLYDLNHNEIGELIR--MPKMGKTIHKYVHLFPKLELSVHLQP 791 (1724)
T ss_dssp GGGGSTTSCHHHHHHHH--TSSC-CGGGGGGCCHHHHHHHHT--CSTTHHHHHHHHTTSCCEEEEEEEEE
T ss_pred ceecCCCCCHHHHHHHH--hcCC-CHHHHHhCCHHHHHHHHC--CchHHHHHHHHHHHCCCceEEEEEEe
Confidence 99999999999999995 3455 899999999999999997 67789999999999999999987665
No 5
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.71 E-value=2.9e-17 Score=196.31 Aligned_cols=180 Identities=13% Similarity=0.128 Sum_probs=144.2
Q ss_pred ccHHHHHHHHhcccccccccccccccCCchhhhHHHHHHhc--CCCcc-cCCCCCCccc-------hhhhHHHHHHHHhc
Q psy12224 141 MALKRVLMILGASLEFDRRFNSEIIERPSDEIEVPQLIRQI--PNLGE-KNRERPLYHK-------YSIKARALIYAHLS 210 (904)
Q Consensus 141 mt~~~LL~ILS~A~EF~~~~n~eI~vR~~E~~eL~kL~k~l--p~l~~-k~Ke~~~~~~-------~~~KA~iLLqAHLs 210 (904)
.+..++|.++|.+.||. ++++|++|..++.+++.+. ..... ..+ ..... ++.|+++|||+|++
T Consensus 510 ~~~~~~l~i~~~~~e~~-----~i~~r~~e~~~l~~~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~k~~llL~~~i~ 582 (720)
T 2zj8_A 510 PNPIGIFHLISLTPDIT-----PFNYSKREFERLEEEYYEFKDRLYFDDPYI--SGYDPYLERKFFRAFKTALVLLAWIN 582 (720)
T ss_dssp CCHHHHHHHHHTSTTCC-----CCCCCHHHHHHHHHHHHHHGGGCSSCCTTS--SCCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHhccCcccc-----ccccCHHHHHHHHHHHHhcccccccccccc--ccccchhhhhHHHHHHHHHHHHHHHh
Confidence 67789999999999998 9999999999998886431 11000 000 00111 67999999999999
Q ss_pred CCCCChhh-----HHHHHHHHHHhhhHHHHHHHHHHHHhHHHHhhccCcccchHHHHHHHHHHHHHHHhccCCCCCCccc
Q psy12224 211 NMQLTSET-----LEADRMYIVKKCPYLLQEMVTCISQLILLAYAQRVPRLIHIETLENVMKLCPMIVQGMWDFKNPLLQ 285 (904)
Q Consensus 211 Ri~Lp~~d-----L~~D~~~IL~~apRLLqAMvdIa~~lg~la~~rr~~~~p~L~taln~m~L~QmIvQalW~~~SPLLQ 285 (904)
|.+++.-. +..|+.+|+++|.||++||++||..+||.. ++..+..|+|||.||+|...+||+|
T Consensus 583 ~~~l~~i~~~~~~~~gdl~~~~~~a~~l~~a~~~i~~~~g~~~------------~~~~l~~l~~rl~~gv~~e~~~L~q 650 (720)
T 2zj8_A 583 EVPEGEIVEKYSVEPGDIYRIVETAEWLVYSLKEIAKVLGAYE------------IVDYLETLRVRVKYGIREELIPLMQ 650 (720)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCGG------------GHHHHHHHHHHHHHTCCGGGGGGTT
T ss_pred CCCHHHHHHHhCCChHhHHHHHHHHHHHHHHHHHHHHHcCcHH------------HHHHHHHHHHHHHcCCCccchhhhh
Confidence 99875321 578999999999999999999998876621 2233444999999999999999999
Q ss_pred CCCCCHHHHHHhhhcccCCCCHHHHHcCCHHHHHHHHhhCCHHHHHHHHHHHccCCc
Q psy12224 286 LPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMPY 342 (904)
Q Consensus 286 LPhvtee~lk~l~~kk~~V~sL~dL~~m~~eEr~~lL~~Lse~q~~dV~kvl~~~P~ 342 (904)
||||+...+++| .+.+++|+.+|++++++++..+ ..+.+++++++..++..+|.
T Consensus 651 lp~v~~~rar~L--~~~G~~s~~dl~~~~~~~l~~~-~~~~~~i~~~~~~~~~~~~~ 704 (720)
T 2zj8_A 651 LPLVGRRRARAL--YNSGFRSIEDISQARPEELLKI-EGIGVKTVEAIFKFLGKNVK 704 (720)
T ss_dssp STTCCHHHHHHH--HTTTCCSHHHHHTCCHHHHHTS-TTCCHHHHHHHHHHHC----
T ss_pred CCCCCHHHHHHH--HHcCCCCHHHHHhCCHHHHHHh-HhHHHHHHHHHHHhcccccc
Confidence 999999999999 6788999999999999999976 66899999999999999998
No 6
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.71 E-value=1e-17 Score=199.62 Aligned_cols=195 Identities=10% Similarity=0.044 Sum_probs=148.5
Q ss_pred cccchhhhhhhhcccCcc-ccHHHHHHHHhcccccccccccccccCCchhhhHHHHHHh--cCCCccc-CCCCCC-ccch
Q psy12224 123 VLLETINFYYAFFQITPH-MALKRVLMILGASLEFDRRFNSEIIERPSDEIEVPQLIRQ--IPNLGEK-NRERPL-YHKY 197 (904)
Q Consensus 123 Vl~dTi~~Fyy~~~ltp~-mt~~~LL~ILS~A~EF~~~~n~eI~vR~~E~~eL~kL~k~--lp~l~~k-~Ke~~~-~~~~ 197 (904)
+...|+.+| ...+... .+..++|.++|.+.||. ++++|++| .++.+++.+ .+..... .++... ...+
T Consensus 488 ~~~~~~~~~--~~~~~~~~~~~~~~l~~i~~~~e~~-----~i~~r~~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (702)
T 2p6r_A 488 IDPLTGFIF--HDVLSRMELSDIGALHLICRTPDME-----RLTVRKTD-SWVEEEAFRLRKELSYYPSDFSVEYDWFLS 559 (702)
T ss_dssp CCHHHHHHH--HHHTTTCCCCHHHHHHHHHHSTTSC-----CCCCCTTT-HHHHHHHHHHGGGSSCCCCTTSTTHHHHHH
T ss_pred CCHHHHHHH--HHHhhcccCCHHHHHHHhhCCcccc-----cCCCCCch-HHHHHHHHhccccccCCcchhhhhhhhhhh
Confidence 445566666 3344443 66779999999999998 89999999 666666543 2211100 000000 0116
Q ss_pred hhhHHHHHHHHhcCCCCCh----hh-HHHHHHHHHHhhhHHHHHHHHHHHHhHHHHhhccCcccchHHHHHHHHHHHHHH
Q psy12224 198 SIKARALIYAHLSNMQLTS----ET-LEADRMYIVKKCPYLLQEMVTCISQLILLAYAQRVPRLIHIETLENVMKLCPMI 272 (904)
Q Consensus 198 ~~KA~iLLqAHLsRi~Lp~----~d-L~~D~~~IL~~apRLLqAMvdIa~~lg~la~~rr~~~~p~L~taln~m~L~QmI 272 (904)
+.|+++|||+|++|.+++. .. +..|+.+|+++|.||++||++||..+|| . .+++|+|||
T Consensus 560 ~~k~~~lL~~~~~~~~l~~i~~~~~~~~gdl~~i~~~a~~l~~a~~~i~~~~g~------------~----~l~~l~~ri 623 (702)
T 2p6r_A 560 EVKTALCLKDWIEEKDEDEICAKYGIAPGDLRRIVETAEWLSNAMNRIAEEVGN------------T----SVSGLTERI 623 (702)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC------------C----SSTTHHHHH
T ss_pred hHHHHHHHHHHHcCCChHHHHHHhCCcHHhHHHHHHHHHHHHHHHHHHHHHcCH------------H----HHHHHHHHH
Confidence 7999999999999998742 11 4789999999999999999999977654 2 578899999
Q ss_pred HhccCCCCCCcccCCCCCHHHHHHhhhcccCCCCHHHHHcCCHHHHHHHHhhCCHHHHHHHHHHHccCCceeEEEe
Q psy12224 273 VQGMWDFKNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMPYVDLHVQ 348 (904)
Q Consensus 273 vQalW~~~SPLLQLPhvtee~lk~l~~kk~~V~sL~dL~~m~~eEr~~lL~~Lse~q~~dV~kvl~~~P~IeIea~ 348 (904)
.||+|...+||+|||||+...+++| .+.++.|+.+|++++ .++..+|+ +.+++.|.+.+. +|+++|++.
T Consensus 624 ~~gv~~~~~~L~qlp~v~~~~ar~l--~~~g~~s~~~l~~~~-~~l~~ll~---~~~~~~i~~~~~-~p~~~~~~~ 692 (702)
T 2p6r_A 624 KHGVKEELLELVRIRHIGRVRARKL--YNAGIRNAEDIVRHR-EKVASLIG---RGIAERVVEGIS-VKSLNPESA 692 (702)
T ss_dssp HHTCCGGGHHHHTSTTCCHHHHHHH--HTTTCCSHHHHHHTH-HHHHHHHC---HHHHHHHHHHHH-HHC------
T ss_pred HcCCCcchHhhhcCCCCCHHHHHHH--HHcCCCCHHHHHhhh-HHHHHHhC---hhHHHHHHHhcC-CCccCcchh
Confidence 9999999999999999999999999 567899999999999 88888875 899999999999 999999754
No 7
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.63 E-value=3.6e-16 Score=135.66 Aligned_cols=60 Identities=35% Similarity=0.611 Sum_probs=57.8
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHcCChHHHHHhhhcCC
Q psy12224 7 TPLKPSGASEASIKKAYRKQSLILHPDKETGDEKAFMKLTKAYQALTDEESRRNFEKYGN 66 (904)
Q Consensus 7 ILGV~~~As~~eIKkAYRkLSlkyHPDKnp~~ee~F~kI~kAYevLtDp~~R~~YD~yG~ 66 (904)
||||+++|+..+||+|||+|+++||||+++++.+.|++|++||++|+||.+|..||++|.
T Consensus 13 iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 72 (73)
T 2och_A 13 VLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQIYDQGGE 72 (73)
T ss_dssp HHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTCHHHHHHHHHHHHHHTSHHHHHHHHHTC-
T ss_pred HcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCHHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 999999999999999999999999999998888999999999999999999999999985
No 8
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.61 E-value=7.8e-16 Score=134.74 Aligned_cols=62 Identities=42% Similarity=0.733 Sum_probs=58.2
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhcCCCCCC--chHHHHHHHHHHHHHcCChHHHHHhhhcCCCC
Q psy12224 7 TPLKPSGASEASIKKAYRKQSLILHPDKET--GDEKAFMKLTKAYQALTDEESRRNFEKYGNPD 68 (904)
Q Consensus 7 ILGV~~~As~~eIKkAYRkLSlkyHPDKnp--~~ee~F~kI~kAYevLtDp~~R~~YD~yG~pd 68 (904)
||||+++||..+||+|||+|+++||||+++ ++.+.|+.|++||++|+||.+|..||.+|...
T Consensus 8 iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 71 (77)
T 1hdj_A 8 TLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEG 71 (77)
T ss_dssp HHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGG
T ss_pred HcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHHcccc
Confidence 999999999999999999999999999984 46789999999999999999999999998643
No 9
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.61 E-value=1.5e-15 Score=181.10 Aligned_cols=192 Identities=13% Similarity=0.098 Sum_probs=151.1
Q ss_pred ccchhhhhhhhcccCc--cccHHHHHHHHhcccccccccccccccCCchhhhHHHHHHhc-CCCcccCCCCCCcc-----
Q psy12224 124 LLETINFYYAFFQITP--HMALKRVLMILGASLEFDRRFNSEIIERPSDEIEVPQLIRQI-PNLGEKNRERPLYH----- 195 (904)
Q Consensus 124 l~dTi~~Fyy~~~ltp--~mt~~~LL~ILS~A~EF~~~~n~eI~vR~~E~~eL~kL~k~l-p~l~~k~Ke~~~~~----- 195 (904)
...|+.+|. ..+.. .++..++|.++|.+.||. ++++|++|..++.+++.+. +... ...+...
T Consensus 508 ~~~~~~~~~--~~~~~~~~~~~~~~l~~i~~~~e~~-----~~~~r~~e~~~l~~~~~~~~~~~~---~~~~~~~~~~~~ 577 (715)
T 2va8_A 508 NPFTADIIR--KGLEGHKASCELAYLHLLAFTPDGP-----LVSVGRNEEEELIELLEDLDCELL---IEEPYEEDEYSL 577 (715)
T ss_dssp CHHHHHHHH--HHHHHSCCCCHHHHHHHHHHSTTSC-----CCCCCHHHHHHHHHHHTTCSSCCS---SCCCSSHHHHHH
T ss_pred CHhHHHHHH--HHhhhccCCCHHHHHHHhhcCcccc-----cCccChHHHHHHHHHHHhcchhhc---ccccccccchhh
Confidence 344555552 22333 478889999999999998 9999999999998886432 2110 0111111
Q ss_pred -chhhhHHHHHHHHhcCCCCCh----hhH-HHHHHHHHHhhhHHHHHHHHHHHHhHHHHhhccCcccchHHHHHHHHHHH
Q psy12224 196 -KYSIKARALIYAHLSNMQLTS----ETL-EADRMYIVKKCPYLLQEMVTCISQLILLAYAQRVPRLIHIETLENVMKLC 269 (904)
Q Consensus 196 -~~~~KA~iLLqAHLsRi~Lp~----~dL-~~D~~~IL~~apRLLqAMvdIa~~lg~la~~rr~~~~p~L~taln~m~L~ 269 (904)
.++.|+++|||+|++|.++.. ..+ ..|+.+++++|.+|+++|.+||..+|| ...+..++.|+
T Consensus 578 ~~~~~k~~~ll~~~~~~~~~~~i~~~y~~~~gdl~~l~~~a~~l~~a~~~i~~~~~~------------~~~~~~l~~l~ 645 (715)
T 2va8_A 578 YINALKVALIMKDWMDEVDEDTILSKYNIGSGDLRNMVETMDWLTYSAYHLSRELKL------------NEHADKLRILN 645 (715)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC------------HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCCCHHHHHHHHCCChhhHHHHHHHHHHHHHHHHHHHHHhCc------------HHHHHHHHHHH
Confidence 167899999999999998753 222 679999999999999999999977655 44577899999
Q ss_pred HHHHhccCCCCCCcccCCCCCHHHHHHhhhcccCCCCHHHHHcCCHHHHHHHHhhCCHHHHHHHHH-HHccCCce
Q psy12224 270 PMIVQGMWDFKNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLK-VLGNMPYV 343 (904)
Q Consensus 270 QmIvQalW~~~SPLLQLPhvtee~lk~l~~kk~~V~sL~dL~~m~~eEr~~lL~~Lse~q~~dV~k-vl~~~P~I 343 (904)
+||.||+|+..+||+|||||+...+++| .+.+++|+.+|+ ++++++..+++ +.+++.|.+ +...+|.+
T Consensus 646 ~rl~~gv~~e~~~L~qlp~i~~~rar~L--~~~g~~s~~~l~-~~~~~l~~~l~---~~~~~~i~~~~~~~~~~~ 714 (715)
T 2va8_A 646 LRVRDGIKEELLELVQISGVGRKRARLL--YNNGIKELGDVV-MNPDKVKNLLG---QKLGEKVVQEAARLLNRF 714 (715)
T ss_dssp HHHHHTCCGGGHHHHTSTTCCHHHHHHH--HHTTCCSHHHHH-HCHHHHHHHHC---HHHHHHHHHHHHHHHC--
T ss_pred HHHHcCCChhhcchhhCCCCCHHHHHHH--HHcCCCCHHHHh-CCHHHHHHHhC---hhHHHHHHHHHHHhhccC
Confidence 9999999999999999999999999999 567899999999 99999999885 788888888 66667754
No 10
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=9.9e-16 Score=134.41 Aligned_cols=62 Identities=35% Similarity=0.664 Sum_probs=58.1
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhcCCCCCC--chHHHHHHHHHHHHHcCChHHHHHhhhcCCCC
Q psy12224 7 TPLKPSGASEASIKKAYRKQSLILHPDKET--GDEKAFMKLTKAYQALTDEESRRNFEKYGNPD 68 (904)
Q Consensus 7 ILGV~~~As~~eIKkAYRkLSlkyHPDKnp--~~ee~F~kI~kAYevLtDp~~R~~YD~yG~pd 68 (904)
||||+++|+..+||+|||+|+++||||+++ ++.+.|++|++||++|+||.+|..||.+|...
T Consensus 12 iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~ 75 (78)
T 2ctp_A 12 ILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGSGP 75 (78)
T ss_dssp HHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHHHHHHHHTCSCS
T ss_pred HcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHcCccc
Confidence 999999999999999999999999999985 45689999999999999999999999998754
No 11
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=1.6e-15 Score=133.19 Aligned_cols=62 Identities=34% Similarity=0.576 Sum_probs=57.8
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhcCCCCCCc---hHHHHHHHHHHHHHcCChHHHHHhhhcCCCC
Q psy12224 7 TPLKPSGASEASIKKAYRKQSLILHPDKETG---DEKAFMKLTKAYQALTDEESRRNFEKYGNPD 68 (904)
Q Consensus 7 ILGV~~~As~~eIKkAYRkLSlkyHPDKnp~---~ee~F~kI~kAYevLtDp~~R~~YD~yG~pd 68 (904)
||||+++|+..+||+|||+|+++||||++++ +.+.|+.|++||++|+||.+|..||.+|...
T Consensus 12 iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~ 76 (79)
T 2dn9_A 12 ILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSGP 76 (79)
T ss_dssp HHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCCCC
T ss_pred HcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccCcC
Confidence 9999999999999999999999999999854 4689999999999999999999999998643
No 12
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.58 E-value=1.3e-15 Score=137.99 Aligned_cols=60 Identities=37% Similarity=0.646 Sum_probs=58.4
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHcCChHHHHHhhhcCC
Q psy12224 7 TPLKPSGASEASIKKAYRKQSLILHPDKETGDEKAFMKLTKAYQALTDEESRRNFEKYGN 66 (904)
Q Consensus 7 ILGV~~~As~~eIKkAYRkLSlkyHPDKnp~~ee~F~kI~kAYevLtDp~~R~~YD~yG~ 66 (904)
||||+++|+..+||+|||+|+++||||+++++.+.|++|++||++|+|+.+|..||++|.
T Consensus 13 iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 72 (92)
T 2o37_A 13 LLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREIYDQYGL 72 (92)
T ss_dssp HHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTSHHHHHHHHHHCH
T ss_pred HcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCCHHHHHHHHHHCH
Confidence 999999999999999999999999999998889999999999999999999999999874
No 13
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=3.1e-15 Score=132.34 Aligned_cols=61 Identities=39% Similarity=0.673 Sum_probs=57.3
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhcCCCCCCch----HHHHHHHHHHHHHcCChHHHHHhhhcCCC
Q psy12224 7 TPLKPSGASEASIKKAYRKQSLILHPDKETGD----EKAFMKLTKAYQALTDEESRRNFEKYGNP 67 (904)
Q Consensus 7 ILGV~~~As~~eIKkAYRkLSlkyHPDKnp~~----ee~F~kI~kAYevLtDp~~R~~YD~yG~p 67 (904)
||||+++|+..+||+|||+|+++||||++++. .+.|++|++||++|+||.+|..||.+|..
T Consensus 14 iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~ 78 (82)
T 2ej7_A 14 VLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSG 78 (82)
T ss_dssp HTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCCC
T ss_pred HcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCcc
Confidence 99999999999999999999999999999653 46899999999999999999999999864
No 14
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.56 E-value=3.7e-15 Score=133.90 Aligned_cols=61 Identities=43% Similarity=0.697 Sum_probs=57.7
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhcCCCCCC--chHHHHHHHHHHHHHcCChHHHHHhhhcCCC
Q psy12224 7 TPLKPSGASEASIKKAYRKQSLILHPDKET--GDEKAFMKLTKAYQALTDEESRRNFEKYGNP 67 (904)
Q Consensus 7 ILGV~~~As~~eIKkAYRkLSlkyHPDKnp--~~ee~F~kI~kAYevLtDp~~R~~YD~yG~p 67 (904)
||||+++|+..+||+|||+|+++||||+++ .+.+.|++|++||++|+||.+|..||.+|..
T Consensus 22 iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~ 84 (88)
T 2cug_A 22 VLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYDHYGSG 84 (88)
T ss_dssp HHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHHHHHHHTTC
T ss_pred HcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHHHHHHHHcCCC
Confidence 999999999999999999999999999985 4678999999999999999999999999864
No 15
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.54 E-value=3.3e-15 Score=135.35 Aligned_cols=61 Identities=23% Similarity=0.459 Sum_probs=56.6
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhcCCCCCCc---------hHHHHHHHHHHHHHcCChHHHHHhhhcCCC
Q psy12224 7 TPLKPSGASEASIKKAYRKQSLILHPDKETG---------DEKAFMKLTKAYQALTDEESRRNFEKYGNP 67 (904)
Q Consensus 7 ILGV~~~As~~eIKkAYRkLSlkyHPDKnp~---------~ee~F~kI~kAYevLtDp~~R~~YD~yG~p 67 (904)
||||+++|+..+||+|||+|+++||||+++. +.+.|++|++||++|+||.+|..||.++..
T Consensus 21 iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~ 90 (94)
T 1wjz_A 21 ILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRSG 90 (94)
T ss_dssp HTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSCC
T ss_pred HcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHccC
Confidence 9999999999999999999999999999853 347899999999999999999999998754
No 16
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.53 E-value=5.4e-15 Score=136.60 Aligned_cols=64 Identities=31% Similarity=0.584 Sum_probs=59.1
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhcCCCCCCc---hHHHHHHHHHHHHHcCChHHHHHhhhcCCCCCC
Q psy12224 7 TPLKPSGASEASIKKAYRKQSLILHPDKETG---DEKAFMKLTKAYQALTDEESRRNFEKYGNPDGP 70 (904)
Q Consensus 7 ILGV~~~As~~eIKkAYRkLSlkyHPDKnp~---~ee~F~kI~kAYevLtDp~~R~~YD~yG~pdg~ 70 (904)
||||+++||..+||+|||+|+++||||++++ +++.|++|++||++|+||.+|..||.+|.....
T Consensus 8 iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~ 74 (103)
T 1bq0_A 8 ILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFE 74 (103)
T ss_dssp TTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTSSC
T ss_pred HcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhhhc
Confidence 9999999999999999999999999999854 468999999999999999999999999976543
No 17
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.53 E-value=8.3e-15 Score=136.88 Aligned_cols=60 Identities=35% Similarity=0.548 Sum_probs=56.8
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhcCCCCCCch---HHHHHHHHHHHHHcCChHHHHHhhhcCC
Q psy12224 7 TPLKPSGASEASIKKAYRKQSLILHPDKETGD---EKAFMKLTKAYQALTDEESRRNFEKYGN 66 (904)
Q Consensus 7 ILGV~~~As~~eIKkAYRkLSlkyHPDKnp~~---ee~F~kI~kAYevLtDp~~R~~YD~yG~ 66 (904)
||||+++|+..+||+|||+|+++||||++++. .+.|++|++||++|+|+.+|..||.+|.
T Consensus 22 vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~ 84 (109)
T 2ctw_A 22 VLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGS 84 (109)
T ss_dssp HHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCH
T ss_pred HcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhcc
Confidence 99999999999999999999999999998653 5789999999999999999999999985
No 18
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=8e-15 Score=131.76 Aligned_cols=61 Identities=34% Similarity=0.618 Sum_probs=57.1
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhcCCCCCCc--hHHHHHHHHHHHHHcCChHHHHHhhhcCCC
Q psy12224 7 TPLKPSGASEASIKKAYRKQSLILHPDKETG--DEKAFMKLTKAYQALTDEESRRNFEKYGNP 67 (904)
Q Consensus 7 ILGV~~~As~~eIKkAYRkLSlkyHPDKnp~--~ee~F~kI~kAYevLtDp~~R~~YD~yG~p 67 (904)
||||+++|+..+||+|||+|+++||||+++. +.+.|++|++||++|+|+.+|..||.+|..
T Consensus 12 iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~ 74 (88)
T 2ctr_A 12 ILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYDTLGHS 74 (88)
T ss_dssp HHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHH
T ss_pred HcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcc
Confidence 9999999999999999999999999999864 357999999999999999999999999853
No 19
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.52 E-value=3.8e-15 Score=137.12 Aligned_cols=68 Identities=37% Similarity=0.629 Sum_probs=59.6
Q ss_pred CCCCCCccCCCCCCCHHHHHHHHHHHHhhcCCCCCCc----hHHHHHHHHHHHHHcCChHHHHHhhhcCCCC
Q psy12224 1 MSGKSRTPLKPSGASEASIKKAYRKQSLILHPDKETG----DEKAFMKLTKAYQALTDEESRRNFEKYGNPD 68 (904)
Q Consensus 1 m~g~~~ILGV~~~As~~eIKkAYRkLSlkyHPDKnp~----~ee~F~kI~kAYevLtDp~~R~~YD~yG~pd 68 (904)
|.....||||+++||..+||+|||+|+++||||++++ +.+.|++|++||++|+|+.+|..||.+|...
T Consensus 1 M~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~ 72 (99)
T 2lgw_A 1 MASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREG 72 (99)
T ss_dssp CCCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC-
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccc
Confidence 4333349999999999999999999999999999865 3578999999999999999999999998643
No 20
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=1e-14 Score=133.89 Aligned_cols=60 Identities=32% Similarity=0.541 Sum_probs=56.0
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhcCCCCCCc---hHHHHHHHHHHHHHcCChHHHHHhhhcCC
Q psy12224 7 TPLKPSGASEASIKKAYRKQSLILHPDKETG---DEKAFMKLTKAYQALTDEESRRNFEKYGN 66 (904)
Q Consensus 7 ILGV~~~As~~eIKkAYRkLSlkyHPDKnp~---~ee~F~kI~kAYevLtDp~~R~~YD~yG~ 66 (904)
||||+++|+..+||+|||+|+++|||||+++ +.+.|++|++||++|+|+.+|..||++..
T Consensus 22 vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 84 (99)
T 2yua_A 22 LLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGLL 84 (99)
T ss_dssp HHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTCC
T ss_pred HcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcc
Confidence 9999999999999999999999999999864 46799999999999999999999998643
No 21
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=8.4e-15 Score=137.40 Aligned_cols=60 Identities=30% Similarity=0.382 Sum_probs=57.0
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhcCCCCCCc---hHHHHHHHHHHHHHcCChHHHHHhhhcCC
Q psy12224 7 TPLKPSGASEASIKKAYRKQSLILHPDKETG---DEKAFMKLTKAYQALTDEESRRNFEKYGN 66 (904)
Q Consensus 7 ILGV~~~As~~eIKkAYRkLSlkyHPDKnp~---~ee~F~kI~kAYevLtDp~~R~~YD~yG~ 66 (904)
||||+++|+..+||+|||+|+++|||||+++ +.+.|++|++||++|+||.+|..||++|.
T Consensus 25 iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 87 (112)
T 2ctq_A 25 LLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRR 87 (112)
T ss_dssp HTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred HcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhh
Confidence 9999999999999999999999999999864 46899999999999999999999999985
No 22
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=1e-14 Score=131.98 Aligned_cols=62 Identities=37% Similarity=0.558 Sum_probs=57.9
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhcCCCCCCch----HHHHHHHHHHHHHcCChHHHHHhhhcCCCC
Q psy12224 7 TPLKPSGASEASIKKAYRKQSLILHPDKETGD----EKAFMKLTKAYQALTDEESRRNFEKYGNPD 68 (904)
Q Consensus 7 ILGV~~~As~~eIKkAYRkLSlkyHPDKnp~~----ee~F~kI~kAYevLtDp~~R~~YD~yG~pd 68 (904)
||||+++|+..+||+|||+|+++||||+++.. .+.|++|++||++|+|+.+|..||.+|...
T Consensus 14 iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~ 79 (92)
T 2dmx_A 14 VLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDS 79 (92)
T ss_dssp HHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCS
T ss_pred HcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccc
Confidence 99999999999999999999999999998653 578999999999999999999999998754
No 23
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.46 E-value=2.2e-14 Score=133.65 Aligned_cols=61 Identities=26% Similarity=0.450 Sum_probs=57.0
Q ss_pred ccCCCCCC-CHHHHHHHHHHHHhhcCCCCCCc------hHHHHHHHHHHHHHcCChHHHHHhhhcCCC
Q psy12224 7 TPLKPSGA-SEASIKKAYRKQSLILHPDKETG------DEKAFMKLTKAYQALTDEESRRNFEKYGNP 67 (904)
Q Consensus 7 ILGV~~~A-s~~eIKkAYRkLSlkyHPDKnp~------~ee~F~kI~kAYevLtDp~~R~~YD~yG~p 67 (904)
||||+++| |..+||+|||+|+++|||||+++ +.+.|++|++||++|+||.+|..||.+|..
T Consensus 20 iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~~ 87 (109)
T 2qsa_A 20 VLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDH 87 (109)
T ss_dssp HTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC
T ss_pred HcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccC
Confidence 99999999 99999999999999999999865 347899999999999999999999999853
No 24
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.43 E-value=1.7e-14 Score=136.13 Aligned_cols=59 Identities=24% Similarity=0.319 Sum_probs=56.1
Q ss_pred ccCCCCCCCH--HHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHcCChHHHHHhhhcCC
Q psy12224 7 TPLKPSGASE--ASIKKAYRKQSLILHPDKETGDEKAFMKLTKAYQALTDEESRRNFEKYGN 66 (904)
Q Consensus 7 ILGV~~~As~--~eIKkAYRkLSlkyHPDKnp~~ee~F~kI~kAYevLtDp~~R~~YD~yG~ 66 (904)
||||+++|+. .+||+|||+|+++|||||+++ +++|++|++||++|+|+.+|..||.||.
T Consensus 13 iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~-~e~f~~I~~AYevL~d~~~R~~~~~~~~ 73 (114)
T 1gh6_A 13 LLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD-EEKMKKMNTLYKKMEDGVKYAHQPDFGG 73 (114)
T ss_dssp HTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT-TTTTHHHHHHHHHHHHHHHSCCSSCCSC
T ss_pred HcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc-HHHHHHHHHHHHHHCCHHHHHHhhhccc
Confidence 8999999999 999999999999999999854 7899999999999999999999999875
No 25
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.43 E-value=5.4e-14 Score=124.30 Aligned_cols=59 Identities=25% Similarity=0.415 Sum_probs=54.6
Q ss_pred ccCCCCC--CCHHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHcCChHHHHHhhhcCCC
Q psy12224 7 TPLKPSG--ASEASIKKAYRKQSLILHPDKETGDEKAFMKLTKAYQALTDEESRRNFEKYGNP 67 (904)
Q Consensus 7 ILGV~~~--As~~eIKkAYRkLSlkyHPDKnp~~ee~F~kI~kAYevLtDp~~R~~YD~yG~p 67 (904)
||||+++ ||..+||+|||+|+++|||||+ +++++|++|++||++|+|+.+|.. +.||.+
T Consensus 16 iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~-~~~~~f~~i~~AYe~L~~~~~r~~-~~~g~~ 76 (79)
T 1faf_A 16 LLKLPRQLWGDFGRMQQAYKQQSLLLHPDKG-GSHALMQELNSLWGTFKTEVYNLR-MNLGGT 76 (79)
T ss_dssp HHTCCSSSTTCHHHHHHHHHHHHHHSSGGGS-CCHHHHHHHHHHHHHHHHHHHHHT-TCCSSC
T ss_pred HcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC-CCHHHHHHHHHHHHHHhhHHHHHH-HhcCCc
Confidence 9999999 9999999999999999999998 568999999999999999999988 557754
No 26
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.42 E-value=1.1e-13 Score=140.65 Aligned_cols=63 Identities=35% Similarity=0.616 Sum_probs=58.5
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhcCCCCCCc---hHHHHHHHHHHHHHcCChHHHHHhhhcCCCCC
Q psy12224 7 TPLKPSGASEASIKKAYRKQSLILHPDKETG---DEKAFMKLTKAYQALTDEESRRNFEKYGNPDG 69 (904)
Q Consensus 7 ILGV~~~As~~eIKkAYRkLSlkyHPDKnp~---~ee~F~kI~kAYevLtDp~~R~~YD~yG~pdg 69 (904)
||||+++|+..+||+|||+|+++|||||+++ +.++|++|++||++|+||.+|..||+||....
T Consensus 7 ~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~ 72 (210)
T 3apq_A 7 LLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGL 72 (210)
T ss_dssp HHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTTC
T ss_pred HcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhccccc
Confidence 9999999999999999999999999999854 46799999999999999999999999997543
No 27
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.39 E-value=1.3e-13 Score=135.91 Aligned_cols=60 Identities=27% Similarity=0.502 Sum_probs=55.6
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhcCCCCCCch---------HHHHHHHHHHHHHcCChHHHHHhhhcCC
Q psy12224 7 TPLKPSGASEASIKKAYRKQSLILHPDKETGD---------EKAFMKLTKAYQALTDEESRRNFEKYGN 66 (904)
Q Consensus 7 ILGV~~~As~~eIKkAYRkLSlkyHPDKnp~~---------ee~F~kI~kAYevLtDp~~R~~YD~yG~ 66 (904)
||||+++|+.++||+|||+|+++|||||+++. .+.|+.|++||++|+||.+|..||.++.
T Consensus 15 iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~ 83 (155)
T 2l6l_A 15 ILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRC 83 (155)
T ss_dssp HHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHH
T ss_pred hcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 99999999999999999999999999998543 3789999999999999999999998754
No 28
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=1.6e-13 Score=123.91 Aligned_cols=53 Identities=38% Similarity=0.497 Sum_probs=50.2
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhcCCCCC--CchHHHHHHHHHHHHHcCChHHHH
Q psy12224 7 TPLKPSGASEASIKKAYRKQSLILHPDKE--TGDEKAFMKLTKAYQALTDEESRR 59 (904)
Q Consensus 7 ILGV~~~As~~eIKkAYRkLSlkyHPDKn--p~~ee~F~kI~kAYevLtDp~~R~ 59 (904)
||||+++|+..+||+|||+|+++|||||+ +++++.|++|++||++|+|+.+|.
T Consensus 32 iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~ 86 (90)
T 2ys8_A 32 MLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSG 86 (90)
T ss_dssp HHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHCCS
T ss_pred HcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCccccc
Confidence 99999999999999999999999999998 456789999999999999999885
No 29
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.37 E-value=5.5e-14 Score=141.52 Aligned_cols=59 Identities=24% Similarity=0.308 Sum_probs=53.6
Q ss_pred ccCCCCCCC--HHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHcCChHHHHHhhhcCC
Q psy12224 7 TPLKPSGAS--EASIKKAYRKQSLILHPDKETGDEKAFMKLTKAYQALTDEESRRNFEKYGN 66 (904)
Q Consensus 7 ILGV~~~As--~~eIKkAYRkLSlkyHPDKnp~~ee~F~kI~kAYevLtDp~~R~~YD~yG~ 66 (904)
||||+++|+ .++||+|||+||++|||||+++ +++|++|++||++|+||.+|+.||+||.
T Consensus 16 vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~-~e~F~~I~~AYevLsdp~kR~~YD~~G~ 76 (174)
T 2pf4_E 16 LLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD-EEKMKKMNTLYKKMEDGVKYAHQPDFGG 76 (174)
T ss_dssp TTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C-CTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred HcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC-HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence 999999999 6999999999999999999854 6899999999999999999999999995
No 30
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.32 E-value=9.9e-13 Score=132.21 Aligned_cols=60 Identities=15% Similarity=0.146 Sum_probs=55.4
Q ss_pred ccCCCCCC--CHHHHHHHHHHHHhhcCCCCCCch--------HHHHHHHHHHHHHcCChHHHHHhhhcCC
Q psy12224 7 TPLKPSGA--SEASIKKAYRKQSLILHPDKETGD--------EKAFMKLTKAYQALTDEESRRNFEKYGN 66 (904)
Q Consensus 7 ILGV~~~A--s~~eIKkAYRkLSlkyHPDKnp~~--------ee~F~kI~kAYevLtDp~~R~~YD~yG~ 66 (904)
||||++++ |..+||+|||+|+++|||||+++. .+.|..|++||++|+||.+|..||.+.+
T Consensus 6 lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~ 75 (171)
T 1fpo_A 6 LFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLH 75 (171)
T ss_dssp HTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred HCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhc
Confidence 99999999 999999999999999999998653 2589999999999999999999999765
No 31
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=99.32 E-value=1.5e-13 Score=151.26 Aligned_cols=61 Identities=26% Similarity=0.391 Sum_probs=0.0
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhcCCCCCCc--hHHHHHHHHHHHHHcCChHHHHHhhhcCCC
Q psy12224 7 TPLKPSGASEASIKKAYRKQSLILHPDKETG--DEKAFMKLTKAYQALTDEESRRNFEKYGNP 67 (904)
Q Consensus 7 ILGV~~~As~~eIKkAYRkLSlkyHPDKnp~--~ee~F~kI~kAYevLtDp~~R~~YD~yG~p 67 (904)
||||+++||.++||+|||+|+++||||+|++ ++++|++|++||++|+||.+|+.||+|+..
T Consensus 33 vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~ 95 (329)
T 3lz8_A 33 ILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQH 95 (329)
T ss_dssp ---------------------------------------------------------------
T ss_pred HcCcCCCCCHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhhhhhhhcccchhhcc
Confidence 9999999999999999999999999999854 467999999999999999999999998643
No 32
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.30 E-value=1.3e-12 Score=131.68 Aligned_cols=60 Identities=18% Similarity=0.180 Sum_probs=54.7
Q ss_pred ccCCCCCCC--HHHHHHHHHHHHhhcCCCCCCch--------HHHHHHHHHHHHHcCChHHHHHhhhcCC
Q psy12224 7 TPLKPSGAS--EASIKKAYRKQSLILHPDKETGD--------EKAFMKLTKAYQALTDEESRRNFEKYGN 66 (904)
Q Consensus 7 ILGV~~~As--~~eIKkAYRkLSlkyHPDKnp~~--------ee~F~kI~kAYevLtDp~~R~~YD~yG~ 66 (904)
||||+++|+ ..+||+|||+|+++|||||+++. .+.|..|++||++|+||.+|..||...+
T Consensus 9 iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~ 78 (174)
T 3hho_A 9 LFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLSLQ 78 (174)
T ss_dssp HTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHT
T ss_pred HcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHcc
Confidence 999999998 99999999999999999998543 3689999999999999999999998543
No 33
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.29 E-value=4.6e-13 Score=121.81 Aligned_cols=48 Identities=31% Similarity=0.515 Sum_probs=44.4
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhcCCCCCCch------HHHHHHHHHHHHHcCC
Q psy12224 7 TPLKPSGASEASIKKAYRKQSLILHPDKETGD------EKAFMKLTKAYQALTD 54 (904)
Q Consensus 7 ILGV~~~As~~eIKkAYRkLSlkyHPDKnp~~------ee~F~kI~kAYevLtD 54 (904)
+|||+++||..+||+|||+|+++|||||++++ ++.|+.|++||++|.+
T Consensus 38 ~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 38 PVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp CCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999998753 5689999999999964
No 34
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.28 E-value=7.4e-13 Score=119.51 Aligned_cols=52 Identities=23% Similarity=0.271 Sum_probs=48.9
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhcCCCCCCch----HHHHHHHHHHHHHcCChHHH
Q psy12224 7 TPLKPSGASEASIKKAYRKQSLILHPDKETGD----EKAFMKLTKAYQALTDEESR 58 (904)
Q Consensus 7 ILGV~~~As~~eIKkAYRkLSlkyHPDKnp~~----ee~F~kI~kAYevLtDp~~R 58 (904)
||||+++||..+||+|||+|+++|||||++++ .+.|++|++||++|+|...|
T Consensus 21 vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r 76 (88)
T 1iur_A 21 VVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFL 76 (88)
T ss_dssp HHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999763 57999999999999998776
No 35
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.26 E-value=1.2e-12 Score=113.33 Aligned_cols=51 Identities=24% Similarity=0.203 Sum_probs=47.9
Q ss_pred ccCCCC-CCCHHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHcCChHHH
Q psy12224 7 TPLKPS-GASEASIKKAYRKQSLILHPDKETGDEKAFMKLTKAYQALTDEESR 58 (904)
Q Consensus 7 ILGV~~-~As~~eIKkAYRkLSlkyHPDKnp~~ee~F~kI~kAYevLtDp~~R 58 (904)
||||++ +||..+||+|||+|+++||||++ ++++.|++|++||++|+|+..|
T Consensus 19 iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~-g~~~~f~~i~~Aye~L~~~~~r 70 (71)
T 2guz_A 19 ILNLTENTLTKKKLKEVHRKIMLANHPDKG-GSPFLATKINEAKDFLEKRGIS 70 (71)
T ss_dssp HTTCCTTTCCHHHHHHHHHHHHHHHCGGGT-CCHHHHHHHHHHHHHHHHHCCC
T ss_pred HcCCCCCCCCHHHHHHHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHhhhhhc
Confidence 999999 79999999999999999999997 7788999999999999988665
No 36
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.24 E-value=5.8e-12 Score=130.24 Aligned_cols=58 Identities=21% Similarity=0.202 Sum_probs=52.6
Q ss_pred ccCCCCC--CCHHHHHHHHHHHHhhcCCCCCCch--------HHHHHHHHHHHHHcCChHHHHHhhhc
Q psy12224 7 TPLKPSG--ASEASIKKAYRKQSLILHPDKETGD--------EKAFMKLTKAYQALTDEESRRNFEKY 64 (904)
Q Consensus 7 ILGV~~~--As~~eIKkAYRkLSlkyHPDKnp~~--------ee~F~kI~kAYevLtDp~~R~~YD~y 64 (904)
||||+++ ++..+||+|||+|+++|||||+++. .++|+.|++||++|+||.+|..||..
T Consensus 48 lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~~ 115 (207)
T 3bvo_A 48 LMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLK 115 (207)
T ss_dssp HTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred HcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 9999997 7999999999999999999998642 25799999999999999999999953
No 37
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.22 E-value=2e-12 Score=131.07 Aligned_cols=58 Identities=22% Similarity=0.315 Sum_probs=54.0
Q ss_pred cc------CCCC-CCCHHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHcCChHHHHHhhhc
Q psy12224 7 TP------LKPS-GASEASIKKAYRKQSLILHPDKETGDEKAFMKLTKAYQALTDEESRRNFEKY 64 (904)
Q Consensus 7 IL------GV~~-~As~~eIKkAYRkLSlkyHPDKnp~~ee~F~kI~kAYevLtDp~~R~~YD~y 64 (904)
|| |+++ +||..+||+|||+|+++|||||++++.+.|+.|++||++|+||.+|..||..
T Consensus 16 ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~a~~~f~~i~~AY~vL~dp~~R~~Yd~~ 80 (181)
T 3uo3_A 16 LFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPLRRSQYMLK 80 (181)
T ss_dssp GCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCSCSSGGGSHHHHHHHHHSHHHHHHHHHH
T ss_pred HhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCccHHHHHHHHHHHHHHHcChHHHHHHHHH
Confidence 99 4655 9999999999999999999999987778999999999999999999999984
No 38
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.20 E-value=2.8e-12 Score=129.88 Aligned_cols=55 Identities=29% Similarity=0.521 Sum_probs=51.4
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhcCCCCCCc------hHHHHHHHHHHHHHcCChHHHHHh
Q psy12224 7 TPLKPSGASEASIKKAYRKQSLILHPDKETG------DEKAFMKLTKAYQALTDEESRRNF 61 (904)
Q Consensus 7 ILGV~~~As~~eIKkAYRkLSlkyHPDKnp~------~ee~F~kI~kAYevLtDp~~R~~Y 61 (904)
||||+++||..+||+|||+|+++|||||+++ +++.|+.|++||++|+|+.+|..|
T Consensus 122 vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y 182 (182)
T 1n4c_A 122 PVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 182 (182)
T ss_dssp CCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence 9999999999999999999999999999854 356999999999999999999876
No 39
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.16 E-value=7.2e-12 Score=116.75 Aligned_cols=49 Identities=33% Similarity=0.526 Sum_probs=44.5
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhcCCCCCCc----------hHHHHHHHHHHHHHcCChH
Q psy12224 7 TPLKPSGASEASIKKAYRKQSLILHPDKETG----------DEKAFMKLTKAYQALTDEE 56 (904)
Q Consensus 7 ILGV~~~As~~eIKkAYRkLSlkyHPDKnp~----------~ee~F~kI~kAYevLtDp~ 56 (904)
|||++. ||..+||+|||+|+++|||||+++ ++++|+.|++||++|+|+.
T Consensus 46 vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~ 104 (106)
T 3ag7_A 46 VPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG 104 (106)
T ss_dssp CCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence 999996 999999999999999999999752 2578999999999999985
No 40
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.06 E-value=1.9e-11 Score=147.05 Aligned_cols=63 Identities=35% Similarity=0.616 Sum_probs=37.9
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhcCCCCCCc---hHHHHHHHHHHHHHcCChHHHHHhhhcCCCCC
Q psy12224 7 TPLKPSGASEASIKKAYRKQSLILHPDKETG---DEKAFMKLTKAYQALTDEESRRNFEKYGNPDG 69 (904)
Q Consensus 7 ILGV~~~As~~eIKkAYRkLSlkyHPDKnp~---~ee~F~kI~kAYevLtDp~~R~~YD~yG~pdg 69 (904)
||||+++||..+||+|||+|+++|||||+++ +.++|++|++||++|+||.+|+.||+||....
T Consensus 26 ~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~~ 91 (780)
T 3apo_A 26 LLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGL 91 (780)
T ss_dssp HHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC-----
T ss_pred HcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhccccc
Confidence 9999999999999999999999999999854 35789999999999999999999999997543
No 41
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=98.30 E-value=3.8e-07 Score=77.89 Aligned_cols=48 Identities=15% Similarity=0.011 Sum_probs=44.7
Q ss_pred ccCCCCC---CCHHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHcCCh
Q psy12224 7 TPLKPSG---ASEASIKKAYRKQSLILHPDKETGDEKAFMKLTKAYQALTDE 55 (904)
Q Consensus 7 ILGV~~~---As~~eIKkAYRkLSlkyHPDKnp~~ee~F~kI~kAYevLtDp 55 (904)
||||+++ ++..+|++|||+|....||||+ |....+.+|+.|++.|...
T Consensus 9 ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkG-GS~yl~~ki~~Ake~l~~~ 59 (65)
T 2guz_B 9 ILNIEESKGDLNMDKINNRFNYLFEVNDKEKG-GSFYLQSKVYRAAERLKWE 59 (65)
T ss_dssp HTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGT-CCHHHHHHHHHHHHHHHHH
T ss_pred HhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHHHHHH
Confidence 9999999 9999999999999999999997 8888999999999998643
No 42
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.23 E-value=5.2e-07 Score=97.83 Aligned_cols=57 Identities=35% Similarity=0.518 Sum_probs=48.8
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhcCCCCCCch------HHHHHHHHHHHHHcCChHHHHHhhh
Q psy12224 7 TPLKPSGASEASIKKAYRKQSLILHPDKETGD------EKAFMKLTKAYQALTDEESRRNFEK 63 (904)
Q Consensus 7 ILGV~~~As~~eIKkAYRkLSlkyHPDKnp~~------ee~F~kI~kAYevLtDp~~R~~YD~ 63 (904)
+||+.++++..+|+++||++++++|||+.+.. ++.|..|++||++|+|+++|..||.
T Consensus 387 ~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~ 449 (450)
T 2y4t_A 387 ILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD 449 (450)
T ss_dssp GSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred HhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence 89999999999999999999999999998653 4689999999999999999999997
No 43
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=90.16 E-value=0.28 Score=42.17 Aligned_cols=57 Identities=19% Similarity=0.246 Sum_probs=50.8
Q ss_pred CCcccCCCCCHHHHHHhhhcccCCCCHHHHHcCCHHHHHHHHhhCCHHHHHHHHHHHccC
Q psy12224 281 NPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNM 340 (904)
Q Consensus 281 SPLLQLPhvtee~lk~l~~kk~~V~sL~dL~~m~~eEr~~lL~~Lse~q~~dV~kvl~~~ 340 (904)
..|.+||+++...+.+| ...++.|+.+|+..+.++...+. ++++.....+...++.+
T Consensus 7 ~~l~~L~Gi~~~~~~kL--~e~Gi~TvedlA~~~~~eL~~i~-gise~kA~~ii~aAr~~ 63 (70)
T 1wcn_A 7 DDLLNLEGVDRDLAFKL--AARGVCTLEDLAEQGIDDLADIE-GLTDEKAGALIMAARNI 63 (70)
T ss_dssp HHHHSSTTCCHHHHHHH--HTTTCCSHHHHHTSCHHHHHTSS-SCCHHHHHHHHHHHHHH
T ss_pred hHHHHcCCCCHHHHHHH--HHcCCCcHHHHHcCCHHHHHHcc-CCCHHHHHHHHHHHHHc
Confidence 46899999999999999 78899999999999999988766 58999999999888763
No 44
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=83.70 E-value=2 Score=38.11 Aligned_cols=49 Identities=16% Similarity=0.266 Sum_probs=40.4
Q ss_pred CCCCCHHHHHHhhhcccCCCCHHHHHcCCHHHHHHHHhhCCHHHHHHHHHHH
Q psy12224 286 LPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVL 337 (904)
Q Consensus 286 LPhvtee~lk~l~~kk~~V~sL~dL~~m~~eEr~~lL~~Lse~q~~dV~kvl 337 (904)
.|.++++.++.| ++++|.|+.||+..++.+..++++ ++-+...++.+++
T Consensus 9 ~p~Lse~~~~~L--~~~~I~Tv~Dfl~~d~~eL~~~~~-ls~~~v~~l~r~l 57 (83)
T 2kz3_A 9 CPGLTEEMIQLL--RSHRIKTVVDLVSADLEEVAQKCG-LSYKALVALRRVL 57 (83)
T ss_dssp STTCCHHHHHHH--HHTTCCCHHHHTTSCHHHHHHHHT-CCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHH--HHCCCCCHHHHHhCCHHHHHHHhC-CCHHHHHHHHHHH
Confidence 388999999999 788999999999999999998875 7766655555443
No 45
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=65.63 E-value=1.7 Score=47.08 Aligned_cols=9 Identities=11% Similarity=-0.060 Sum_probs=4.7
Q ss_pred HHccCCcee
Q psy12224 336 VLGNMPYVD 344 (904)
Q Consensus 336 vl~~~P~Ie 344 (904)
.+..+|.|+
T Consensus 211 ~l~~~~~L~ 219 (386)
T 2ca6_A 211 GLAYCQELK 219 (386)
T ss_dssp TGGGCTTCC
T ss_pred HhhcCCCcc
Confidence 455555554
No 46
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=59.20 E-value=10 Score=33.52 Aligned_cols=54 Identities=15% Similarity=0.373 Sum_probs=43.4
Q ss_pred CCCcccCCCCCHHHHHHhhhcccCCCCHHHHHcCCHHHHHHHHhhCCHHH-HHHHHHHHcc
Q psy12224 280 KNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQ-YSDMLKVLGN 339 (904)
Q Consensus 280 ~SPLLQLPhvtee~lk~l~~kk~~V~sL~dL~~m~~eEr~~lL~~Lse~q-~~dV~kvl~~ 339 (904)
.+.|..+|+|++...+.|. ....|+..|.+++.+++..+++ ... .+.|+.+++.
T Consensus 17 ~s~L~~IpGIG~kr~~~LL---~~FgSl~~i~~AS~eEL~~vig---~~~~A~~I~~~l~~ 71 (84)
T 1z00_B 17 QDFLLKMPGVNAKNCRSLM---HHVKNIAELAALSQDELTSILG---NAANAKQLYDFIHT 71 (84)
T ss_dssp HHHHHTCSSCCHHHHHHHH---HHSSCHHHHHHSCHHHHHHHHS---CHHHHHHHHHHHTS
T ss_pred HHHHHhCCCCCHHHHHHHH---HHcCCHHHHHHCCHHHHHHHhC---chHHHHHHHHHHHh
Confidence 3668899999998888875 2357999999999999999864 444 7888888863
No 47
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=58.54 E-value=8.5 Score=40.97 Aligned_cols=55 Identities=13% Similarity=0.100 Sum_probs=46.6
Q ss_pred CcccCCCCCHHHHHHhhhcccCCCCHHHHHcCCHHHHHHHHhhCCHHHHHHHHHHHcc
Q psy12224 282 PLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGN 339 (904)
Q Consensus 282 PLLQLPhvtee~lk~l~~kk~~V~sL~dL~~m~~eEr~~lL~~Lse~q~~dV~kvl~~ 339 (904)
+|..||+++...+++| +..++.|+.+|+..+..++..+. +++++...+++..+..
T Consensus 4 ~~~~l~gi~~~~~~kL--~~~gi~t~~~~~~~~~~~L~~~~-gis~~~a~~~i~~a~~ 58 (322)
T 2i1q_A 4 NLTDLPGVGPSTAEKL--VEAGYIDFMKIATATVGELTDIE-GISEKAAAKMIMGARD 58 (322)
T ss_dssp -CTTSTTCCHHHHHHH--HHHTCCSHHHHHTCCHHHHHTST-TCCHHHHHHHHHHHHH
T ss_pred cHhhcCCCCHHHHHHH--HHcCCCcHHHHHhCCHHHHHHhh-CcCHHHHHHHHHHHHH
Confidence 6889999999999999 77899999999999988877654 5898888888877765
No 48
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=58.32 E-value=16 Score=31.54 Aligned_cols=56 Identities=14% Similarity=0.229 Sum_probs=45.3
Q ss_pred CCcccCCCCCHHHHHHhhhcccCCCCHHHHHcCCHHHHHHHHhhCCHHHHHHHHHHHccC
Q psy12224 281 NPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNM 340 (904)
Q Consensus 281 SPLLQLPhvtee~lk~l~~kk~~V~sL~dL~~m~~eEr~~lL~~Lse~q~~dV~kvl~~~ 340 (904)
.|+-|| .++......| ++.+|.++.||++++.++... ++++..+-+++|...+..+
T Consensus 9 ~~Ie~L-~LS~Ra~NcL--kragI~Tv~dL~~~s~~dLlk-i~n~G~kSl~EI~~~L~~~ 64 (73)
T 1z3e_B 9 MTIEEL-DLSVRSYNCL--KRAGINTVQELANKTEEDMMK-VRNLGRKSLEEVKAKLEEL 64 (73)
T ss_dssp CBGGGS-CCBHHHHHHH--HHTTCCBHHHHHTSCHHHHHT-STTCCHHHHHHHHHHHHHT
T ss_pred CcHHHh-CCCHHHHHHH--HHcCCCcHHHHHcCCHHHHHH-cCCCCHHHHHHHHHHHHHh
Confidence 466677 5777777777 678999999999999988765 3568999999999888765
No 49
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=54.44 E-value=9.5 Score=31.72 Aligned_cols=54 Identities=15% Similarity=0.362 Sum_probs=43.0
Q ss_pred CCCcccCCCCCHHHHHHhhhcccCCCCHHHHHcCCHHHHHHHHhhCCHHH-HHHHHHHHcc
Q psy12224 280 KNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQ-YSDMLKVLGN 339 (904)
Q Consensus 280 ~SPLLQLPhvtee~lk~l~~kk~~V~sL~dL~~m~~eEr~~lL~~Lse~q-~~dV~kvl~~ 339 (904)
.+.|..+|+|++...+.|.+ ...|+..+.+++.+++..+++ ... .+.|+++++.
T Consensus 3 ~s~L~~IpGIG~kr~~~LL~---~Fgs~~~i~~As~eeL~~vig---~~~~A~~I~~~l~~ 57 (63)
T 2a1j_A 3 QDFLLKMPGVNAKNCRSLMH---HVKNIAELAALSQDELTSILG---NAANAKQLYDFIHT 57 (63)
T ss_dssp CHHHHTSTTCCHHHHHHHHH---HCSSHHHHHTCCHHHHHHHHS---CHHHHHHHHHHHHC
T ss_pred HhHHHcCCCCCHHHHHHHHH---HcCCHHHHHHCCHHHHHHHcC---chHHHHHHHHHHhc
Confidence 45688999999988887752 347999999999999998854 445 7888888853
No 50
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=53.21 E-value=20 Score=32.02 Aligned_cols=57 Identities=14% Similarity=0.158 Sum_probs=46.1
Q ss_pred CCcccCCCCCHHHHHHhhhcccCCCCHHHHHcCCHHHHHHHHhhCCHHHHHHHHHHHccCC
Q psy12224 281 NPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMP 341 (904)
Q Consensus 281 SPLLQLPhvtee~lk~l~~kk~~V~sL~dL~~m~~eEr~~lL~~Lse~q~~dV~kvl~~~P 341 (904)
.|+-|| .++......| ++.+|.++.||+.++.++...+ +++..+-+++|...+..+-
T Consensus 12 ~~I~~L-~LSvRa~NcL--kragI~Tv~dL~~~se~dLlki-~n~G~KSl~EI~~~L~~~G 68 (86)
T 3k4g_A 12 RPVDDL-ELTVRSANCL--XAEAIHYIGDLVQRTEVELLXT-PNLGXXSLTEIXDVLASRG 68 (86)
T ss_dssp SBGGGG-CCCHHHHHHH--HHTTCCBHHHHHHSCHHHHHTS-TTCCHHHHHHHHHHHHTTT
T ss_pred CcHHHh-CCCHHHHHHH--HHcCCCcHHHHHhCCHHHHhhc-cccCcccHHHHHHHHHHcC
Confidence 455566 5777777777 7789999999999999887654 5799999999999988763
No 51
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=49.09 E-value=26 Score=38.13 Aligned_cols=56 Identities=13% Similarity=0.182 Sum_probs=47.9
Q ss_pred CCcccCCCCCHHHHHHhhhcccCCCCHHHHHcCCHHHHHHHHhhCCHHHHHHHHHHHcc
Q psy12224 281 NPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGN 339 (904)
Q Consensus 281 SPLLQLPhvtee~lk~l~~kk~~V~sL~dL~~m~~eEr~~lL~~Lse~q~~dV~kvl~~ 339 (904)
.+|.+||+++...+++| ++.++.|+.+++..+..++..+.+ +++.....+++.+..
T Consensus 35 ~~l~~l~Gi~~~~~~kL--~~ag~~t~~~~~~~~~~~L~~~~~-~s~~~~~~~l~~~~~ 90 (349)
T 1pzn_A 35 RSIEDLPGVGPATAEKL--REAGYDTLEAIAVASPIELKEVAG-ISEGTALKIIQAARK 90 (349)
T ss_dssp CCSSCCTTCCHHHHHHH--HTTTCCSHHHHHTCCHHHHHHHHC-CCHHHHHHHHHHHHH
T ss_pred ccHHHcCCCCHHHHHHH--HHcCCCcHHHHHhCCHHHHHhhcC-CCHHHHHHHHHHHhh
Confidence 47999999999999999 778999999999999999887664 788888777777654
No 52
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=47.85 E-value=3.9 Score=45.01 Aligned_cols=13 Identities=15% Similarity=0.419 Sum_probs=6.4
Q ss_pred HHHHHHHhhhHHH
Q psy12224 222 DRMYIVKKCPYLL 234 (904)
Q Consensus 222 D~~~IL~~apRLL 234 (904)
++..++.++|+|+
T Consensus 129 ~i~~ll~~~P~lL 141 (335)
T 4fp9_B 129 KLKRVLYCCPEIF 141 (335)
T ss_dssp THHHHHHHCGGGG
T ss_pred HHHHHHHhCchhh
Confidence 3444555555544
No 53
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=45.81 E-value=17 Score=31.92 Aligned_cols=56 Identities=14% Similarity=0.229 Sum_probs=43.7
Q ss_pred CCcccCCCCCHHHHHHhhhcccCCCCHHHHHcCCHHHHHHHHhhCCHHHHHHHHHHHccC
Q psy12224 281 NPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNM 340 (904)
Q Consensus 281 SPLLQLPhvtee~lk~l~~kk~~V~sL~dL~~m~~eEr~~lL~~Lse~q~~dV~kvl~~~ 340 (904)
.|+-+| .++......| ++.+|.++.||+.++.++...+ +++...-+++|...+..+
T Consensus 16 ~~Ie~L-~LS~Ra~NcL--k~agI~Tv~dL~~~se~dLlki-~n~G~kSl~EI~~~L~e~ 71 (79)
T 3gfk_B 16 MTIEEL-DLSVRSYNCL--KRAGINTVQELANKTEEDMMKV-RNLGRKSLEEVKAKLEEL 71 (79)
T ss_dssp CBGGGS-CCBHHHHHHH--HHTTCCBHHHHTTCCHHHHTTS-TTCHHHHHHHHHHHHHHT
T ss_pred CcHHHh-CCCHHHHHHH--HHhCCCCHHHHHhCCHHHHHHc-CCCCHhHHHHHHHHHHHc
Confidence 455566 5777777777 7789999999999999887653 568888888888887654
No 54
>2wnv_B C1Q chain B, complement C1Q subcomponent subunit B; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_B 2wnu_B* 2jg9_B* 1pk6_B
Probab=41.44 E-value=19 Score=34.13 Aligned_cols=21 Identities=33% Similarity=0.515 Sum_probs=18.3
Q ss_pred EEEEcCCCCceeEEEEEEEcCC
Q psy12224 593 LKFTAPRWPGVYTFSVCLRCDS 614 (904)
Q Consensus 593 LkF~AP~~pG~y~ytv~v~SDS 614 (904)
=+|+|| .||.|.|+..+.+.+
T Consensus 41 G~Ftap-~~G~Y~Fs~~~~~~~ 61 (136)
T 2wnv_B 41 GKFTCK-VPGLYYFTYHASSRG 61 (136)
T ss_dssp TEEECS-SCEEEEEEEEEEESS
T ss_pred CEEECC-cCeEEEEEEEEEECC
Confidence 369998 789999999999874
No 55
>2wnv_A C1Q chain A, complement C1Q subcomponent subunit A; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_A 2wnu_A* 2jg9_A* 1pk6_A
Probab=36.95 E-value=25 Score=33.18 Aligned_cols=21 Identities=24% Similarity=0.410 Sum_probs=17.9
Q ss_pred EEEEcCCCCceeEEEEEEEcCC
Q psy12224 593 LKFTAPRWPGVYTFSVCLRCDS 614 (904)
Q Consensus 593 LkF~AP~~pG~y~ytv~v~SDS 614 (904)
=+|+|| .||.|.|+..+.+..
T Consensus 38 G~Ftap-~~G~Y~Fs~~~~~~~ 58 (134)
T 2wnv_A 38 GRFVCT-VPGYYYFTFQVLSQW 58 (134)
T ss_dssp TEEECC-SCEEEEEEEEEEESS
T ss_pred CEEECe-eCCEEEEEEEEEECC
Confidence 369998 789999999999863
No 56
>2wnv_C C1Q chain C, complement C1Q subcomponent subunit C; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_C 2wnu_C* 2jg9_C* 1pk6_C
Probab=35.28 E-value=25 Score=32.99 Aligned_cols=20 Identities=35% Similarity=0.566 Sum_probs=17.7
Q ss_pred EEEcCCCCceeEEEEEEEcCC
Q psy12224 594 KFTAPRWPGVYTFSVCLRCDS 614 (904)
Q Consensus 594 kF~AP~~pG~y~ytv~v~SDS 614 (904)
.|+|| .||.|.|+..+.+..
T Consensus 43 ~Ftap-~~G~Y~Fs~~~~~~~ 62 (131)
T 2wnv_C 43 KFTCK-VPGLYYFVYHASHTA 62 (131)
T ss_dssp EEECS-SCEEEEEEEEEEESS
T ss_pred EEEcc-cCCEEEEEEEEEECC
Confidence 69998 789999999998864
No 57
>1coo_A RNA polymerase alpha subunit; transcription regulation, nucleotidyl transferase; NMR {Escherichia coli} SCOP: a.60.3.1 PDB: 2jzb_A
Probab=34.07 E-value=32 Score=31.40 Aligned_cols=55 Identities=16% Similarity=0.186 Sum_probs=42.3
Q ss_pred CcccCCCCCHHHHHHhhhcccCCCCHHHHHcCCHHHHHHHHhhCCHHHHHHHHHHHccC
Q psy12224 282 PLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNM 340 (904)
Q Consensus 282 PLLQLPhvtee~lk~l~~kk~~V~sL~dL~~m~~eEr~~lL~~Lse~q~~dV~kvl~~~ 340 (904)
|+-|| .++......| ++.+|.++.||+.++.++... +++|..+-+++|...+..+
T Consensus 25 ~Ie~L-~LSvRs~NcL--kragI~Tv~dL~~~se~dLlk-i~n~G~KSl~EI~~~L~~~ 79 (98)
T 1coo_A 25 PVDDL-ELTVRSANCL--KAEAIHYIGDLVQRTEVELLK-TPNLGKKSLTEIKDVLASR 79 (98)
T ss_dssp BGGGG-TCCTTTHHHH--HTTTCCBHHHHHTSCHHHHTT-STTCCHHHHHHHHHHHHHT
T ss_pred cHHHh-CCCHHHHHHH--HHcCCCcHHHHHhCCHHHHHh-cCCCCHHHHHHHHHHHHHc
Confidence 45555 4555555556 678999999999999988665 3468999999999998876
No 58
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=31.04 E-value=19 Score=30.77 Aligned_cols=54 Identities=9% Similarity=0.111 Sum_probs=44.0
Q ss_pred cccCCCCCHHHHHHhhhcccCCCCHHHHHcCCHHHHHHHHhhCCHHHHHHHHHHHcc
Q psy12224 283 LLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGN 339 (904)
Q Consensus 283 LLQLPhvtee~lk~l~~kk~~V~sL~dL~~m~~eEr~~lL~~Lse~q~~dV~kvl~~ 339 (904)
|.+..++++..+++| ...+..|+..++-.+.++...+- ++++...+++...++.
T Consensus 8 f~~~lgI~e~~a~~L--~~~Gf~tve~vA~~~~~eL~~I~-G~dE~~a~~l~~~A~~ 61 (70)
T 1u9l_A 8 FTKYLDIDEDFATVL--VEEGFSTLEELAYVPMKELLEIE-GLDEPTVEALRERAKN 61 (70)
T ss_dssp HHHHHTCCHHHHHHH--HHTTCCCHHHHHHSCHHHHTTST-TCCHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHH--HHcCcCcHHHHHcCCHHHHhhcc-CCCHHHHHHHHHHHHH
Confidence 344558999999999 67889999999999988876543 5899999988887764
No 59
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=29.64 E-value=11 Score=40.35 Aligned_cols=56 Identities=11% Similarity=0.127 Sum_probs=0.0
Q ss_pred CCcccCCCCCHHHHHHhhhcccCCCCHHHHHcCCHHHHHHHHhhCCHHHHHHHHHHHcc
Q psy12224 281 NPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGN 339 (904)
Q Consensus 281 SPLLQLPhvtee~lk~l~~kk~~V~sL~dL~~m~~eEr~~lL~~Lse~q~~dV~kvl~~ 339 (904)
.+|-+||+++...+++| ++.++.|+.+++..+..++..+. ++++.....+++.+..
T Consensus 12 ~~~~~l~g~~~~~~~~l--~~~g~~t~~~~~~~~~~~l~~~~-g~s~~~~~~~~~~~~~ 67 (324)
T 2z43_A 12 KTINDLPGISQTVINKL--IEAGYSSLETLAVASPQDLSVAA-GIPLSTAQKIIKEARD 67 (324)
T ss_dssp -----------------------------------------------------------
T ss_pred ccHHHcCCCCHHHHHHH--HHcCCCcHHHHHcCCHHHHHHhh-CCCHHHHHHHHHHHHh
Confidence 47899999999999999 77899999999988887776654 4777777777766654
No 60
>2yrl_A KIAA1837 protein; PKD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.88 E-value=1.2e+02 Score=27.09 Aligned_cols=39 Identities=18% Similarity=0.313 Sum_probs=30.4
Q ss_pred EEEEEEcCCCCceeEEEEEEEcCCCccccceEEEEEEeecCC
Q psy12224 591 VQLKFTAPRWPGVYTFSVCLRCDSYLGFDQMQDIKLDVKEAP 632 (904)
Q Consensus 591 v~LkF~AP~~pG~y~ytv~v~SDSYlG~Dq~~dikl~V~ea~ 632 (904)
..+.|++| .+|.|+|+|.|.=+. |.--...+.+.|....
T Consensus 59 ~~~~~t~~-~~G~y~f~LTVtD~~--G~s~s~~v~VtV~~~~ 97 (102)
T 2yrl_A 59 SVATVTGL-QVGTYVFTLTVKDER--NLQSQSSVNVIVKEES 97 (102)
T ss_dssp SEEEEESC-CSSEEEEEEEEEBTT--CCEEEEEEEEEEECCS
T ss_pred ccEEEECC-CCeEEEEEEEEEeCC--CCEEEeEEEEEEcCCC
Confidence 36678877 689999999986554 7766788889888765
No 61
>4aco_A Centromere DNA-binding protein complex CBF3 subun; 1.89A {Saccharomyces cerevisiae}
Probab=27.85 E-value=13 Score=45.30 Aligned_cols=19 Identities=21% Similarity=0.270 Sum_probs=10.5
Q ss_pred CCCCcccCCCCC-HHHHHHh
Q psy12224 279 FKNPLLQLPYVT-DDHLKHF 297 (904)
Q Consensus 279 ~~SPLLQLPhvt-ee~lk~l 297 (904)
..|||-|-|-|. .+...++
T Consensus 480 P~HdLFkdPiFqspEF~~y~ 499 (956)
T 4aco_A 480 PNHDIFQDPIFGNSDFQSYF 499 (956)
T ss_dssp TTSGGGGSGGGGSHHHHHHH
T ss_pred CCCccccCcccCCHHHHHHH
Confidence 357777777653 3433333
No 62
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=27.73 E-value=11 Score=42.54 Aligned_cols=9 Identities=11% Similarity=0.139 Sum_probs=4.8
Q ss_pred CCHHHHHHh
Q psy12224 289 VTDDHLKHF 297 (904)
Q Consensus 289 vtee~lk~l 297 (904)
|..-.+..|
T Consensus 185 IP~FWltal 193 (417)
T 2ayu_A 185 IPSFWLTAL 193 (417)
T ss_dssp CTTHHHHHH
T ss_pred CccHHHHHH
Confidence 334466666
No 63
>2lpe_A Kinase suppressor of RAS 1; SAM domain, CC-SAM, coiled-coil, signaling protein, scaffold protein; NMR {Mus musculus}
Probab=25.90 E-value=1.3e+02 Score=29.38 Aligned_cols=57 Identities=12% Similarity=0.223 Sum_probs=41.6
Q ss_pred CCCcccCCCC---------CHHHHHHhhhcccCCCCHHHHHcCCHHHHHHHHhh--CCHHHHHHHHHHHccC
Q psy12224 280 KNPLLQLPYV---------TDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKF--MNDEQYSDMLKVLGNM 340 (904)
Q Consensus 280 ~SPLLQLPhv---------tee~lk~l~~kk~~V~sL~dL~~m~~eEr~~lL~~--Lse~q~~dV~kvl~~~ 340 (904)
...|.++|.+ ..+.+..+ .+..|+++|++|++.+.+.+|+. -++++...+..+++++
T Consensus 77 ~~~l~~yP~l~~WLrvVgl~~esiq~i----~~~~TLe~LLemsd~evr~~L~~~ga~eEEcrRL~~Al~nL 144 (149)
T 2lpe_A 77 TAELNSYPRFSDWLYIFNVRPEVVQEI----PQELTLDALLEMDEAKAKEMLRRWGASTEECSRLQQALTCL 144 (149)
T ss_dssp CTTGGGCSCSTTTHHHHTCCHHHHTTS----CTTCSHHHHTTSCHHHHHHHHHTTTCCTHHHHHHHHHHTTG
T ss_pred chhhhcCchHHHHHHHhccCHHHHHHh----hhhccHHHHHhcCHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 4568889954 45555444 44689999999999999999963 3456777777776654
No 64
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=25.42 E-value=15 Score=40.37 Aligned_cols=14 Identities=36% Similarity=0.527 Sum_probs=9.9
Q ss_pred HHHHHHHhhhHHHH
Q psy12224 222 DRMYIVKKCPYLLQ 235 (904)
Q Consensus 222 D~~~IL~~apRLLq 235 (904)
+...|+.++|+|+.
T Consensus 94 ~V~kiL~k~P~lL~ 107 (335)
T 4fp9_B 94 PVCVVLKKSPQLLK 107 (335)
T ss_dssp HHHHHHHHCGGGGG
T ss_pred HHHHHHHhChhhcc
Confidence 66677777777764
No 65
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=24.87 E-value=54 Score=29.57 Aligned_cols=37 Identities=19% Similarity=0.187 Sum_probs=32.2
Q ss_pred CCCcccCCCCCHHHHHHhhhcccCCCCHHHHHcCCHHHH
Q psy12224 280 KNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEER 318 (904)
Q Consensus 280 ~SPLLQLPhvtee~lk~l~~kk~~V~sL~dL~~m~~eEr 318 (904)
.+.|..||.|.....+.| .+-+|.|+.+|..+...+-
T Consensus 3 m~~L~dLPNig~~~e~~L--~~~GI~t~~~Lr~~Ga~~a 39 (93)
T 3mab_A 3 LANLSELPNIGKVLEQDL--IKAGIKTPVELKDVGSKEA 39 (93)
T ss_dssp CCCGGGSTTCCHHHHHHH--HHTTCCSHHHHHHHCHHHH
T ss_pred HHHHhhCCCCCHHHHHHH--HHcCCCCHHHHHhCCHHHH
Confidence 467999999999999989 7889999999998887653
No 66
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=22.20 E-value=16 Score=34.11 Aligned_cols=58 Identities=10% Similarity=0.214 Sum_probs=49.3
Q ss_pred CCcccCC--CCCHHHHHHhhhcccCCCCHHHHHcCCHHHHHHHHhhCCHHHHHHHHHHHccCC
Q psy12224 281 NPLLQLP--YVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMP 341 (904)
Q Consensus 281 SPLLQLP--hvtee~lk~l~~kk~~V~sL~dL~~m~~eEr~~lL~~Lse~q~~dV~kvl~~~P 341 (904)
.++..|+ +++...+++| +..++.|+.+++..+..++..+. ++++...+.|+..++.+-
T Consensus 23 ~~I~~L~~~GIg~~~i~kL--~eAG~~Tve~va~a~~~eL~~i~-GIse~ka~kIi~aA~kl~ 82 (114)
T 1b22_A 23 QPISRLEQCGINANDVKKL--EEAGFHTVEAVAYAPKKELINIK-GISEAKADKILAEAAKLV 82 (114)
T ss_dssp CCHHHHHHTTCSHHHHHHH--HTTCCSSGGGBTSSBHHHHHTTT-TCSTTHHHHHHHHHHHHS
T ss_pred ccHHHHHhcCCCHHHHHHH--HHcCcCcHHHHHhCCHHHHHHcc-CCCHHHHHHHHHHHHHHc
Confidence 4677777 8999999999 77899999999999988877654 589999999999998863
No 67
>1t0f_C Protein E, transposon TN7 transposition protein TNSC; protein-protein complex, mixed alpha-beta, DNA binding protein; 1.85A {Escherichia coli}
Probab=20.48 E-value=37 Score=27.88 Aligned_cols=32 Identities=41% Similarity=0.500 Sum_probs=22.7
Q ss_pred cchhhhhHh--hcCCCceEEEehhHHHHHhcCCCccccc
Q psy12224 832 LQPDILSYI--QKGEGKKIFFIKVYEELKRKGFPLDVRS 868 (904)
Q Consensus 832 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (904)
|.-|=|.|| |++.|. -+||.|+++|.-+|+++
T Consensus 15 L~~~DLR~iySq~~~~~-----s~Ye~L~~~GlI~d~~~ 48 (54)
T 1t0f_C 15 LPDTDLRYIYSQRQPEK-----TMHERLKGKGVIVDMAS 48 (54)
T ss_dssp SCTTCHHHHHHTSCTTS-----CHHHHHHHTTSBCCHHH
T ss_pred CCHhHhHHHHhccCchH-----HHHHHHHHCCceeeHHH
Confidence 444445554 665665 38999999999998764
No 68
>3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron transport, metal-binding, transport; 1.40A {Phormidium laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A 1baw_A 3bqv_A
Probab=20.02 E-value=51 Score=28.74 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=19.9
Q ss_pred ecceeEEEEEEEcCCCCceeEEEEE
Q psy12224 585 LVDQEQVQLKFTAPRWPGVYTFSVC 609 (904)
Q Consensus 585 L~~~~ev~LkF~AP~~pG~y~ytv~ 609 (904)
+...++..+.|++|..||.|.|.+.
T Consensus 66 i~pG~~~~~~f~~~~~~G~y~y~C~ 90 (105)
T 3cvb_A 66 FSPGESYEITFSSDFPAGTYTYYCA 90 (105)
T ss_dssp CSTTCEEEEEECTTSCSEEEEEECT
T ss_pred cCCCCeEEEEEecCCCCeeEEEEeC
Confidence 3455778899999889999998755
Done!