RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12224
(904 letters)
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA
helicase, rnpase, RNA unwindase, molecular model mRNA
splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A*
3hib_A
Length = 328
Score = 119 bits (298), Expect = 2e-29
Identities = 56/255 (21%), Positives = 107/255 (41%), Gaps = 32/255 (12%)
Query: 123 VLLETINFYYAFFQITPHMALKRVLMILGASLEFDRRFNSEIIERPSDEIEVPQLIRQIP 182
V TI + + ++ LK +L +L ++EF+ + R D + +L +++P
Sbjct: 23 VSFFTIQSFVS--SLSNTSTLKNMLYVLSTAVEFE-----SVPLRKGDRALLVKLSKRLP 75
Query: 183 NLGEKNRERPLYHKYSIKARALIYAHLSNMQLTSETLEADRMYIVKKCPYLLQEMVTCIS 242
+ E S K L+ A+ S ++L + + D I++K L+ +V +S
Sbjct: 76 L---RFPEHTSSGSVSFKVFLLLQAYFSRLELPVD-FQNDLKDILEKVVPLINVVVDILS 131
Query: 243 QLILLAYAQRVPRLIHIETLENVMKLCPMIVQGMWDFKNPLLQLPYVTDDHLKHFICKKR 302
L M L M++QG+WD NPL Q+P+ + L+ CK+
Sbjct: 132 ANGYL-------------NATTAMDLAQMLIQGVWDVDNPLRQIPHFNNKILEK--CKEI 176
Query: 303 YIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMPYVDLHVQPEVIDDEATTEYTA 362
++++ +++EER ++ + D Q + + + N P V+L D +
Sbjct: 177 NVETVYDIMALEDEERDEILT-LTDSQLAQVAAFVNNYPNVELTYSLNNSDS-----LIS 230
Query: 363 GAIITVTCTLMRKPM 377
G +T L R
Sbjct: 231 GVKQKITIQLTRDVE 245
Score = 70.0 bits (170), Expect = 6e-13
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 546 QSHSVHCPRFPEDKQEFWWIYISDRKSRTLLTSPYHITELVDQEQVQLKFTAPRWPGVYT 605
++ V ++P DK E WW+ + + + L +T + +Q +L+F P G +
Sbjct: 247 ENLQVTSEKYPFDKLESWWLVLGEVSKKELYAIK-KVTLNKETQQYELEFDTPT-SGKHN 304
Query: 606 FSVCLRCDSYLGFDQMQDIKLDVK 629
++ CDSYL D+ +++VK
Sbjct: 305 LTIWCVCDSYLDADKELSFEINVK 328
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics,
translocase, northeast structural genomics consortium,
PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Length = 339
Score = 116 bits (290), Expect = 3e-28
Identities = 61/253 (24%), Positives = 119/253 (47%), Gaps = 32/253 (12%)
Query: 123 VLLETINFYYAFFQITPHMALKRVLMILGASLEFDRRFNSEIIERPSDEIEVPQLIRQIP 182
+ TI + + ++ ++ I+ + E++ I R ++ + QL +++P
Sbjct: 27 INYTTIELF--SMSLNAKTKVRGLIEIISNAAEYE-----NIPIRHHEDNLLRQLAQKVP 79
Query: 183 NLGEKNRERPLYHKYSIKARALIYAHLSNMQLTSETLEADRMYIVKKCPYLLQEMVTCIS 242
+ P ++ +K L+ AHLS MQL++E L++D I+ K L+Q V +S
Sbjct: 80 H----KLNNPKFNDPHVKTNLLLQAHLSRMQLSAE-LQSDTEEILSKAIRLIQACVDVLS 134
Query: 243 QLILLAYAQRVPRLIHIETLENVMKLCPMIVQGMWDFKNPLLQLPYVTDDHLKHFICKKR 302
L+ A M+L M+ Q MW + L QLP+ T +H+K C +
Sbjct: 135 SNGWLSPA------------LAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKR--CTDK 180
Query: 303 YIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMPYVDLHVQPEVIDDEATTEYTA 362
++S+ +M++EER ++++ + D Q +D+ + P ++L EV+D + +
Sbjct: 181 GVESVFDIMEMEDEERNALLQ-LTDSQIADVARFCNRYPNIELSY--EVVDKD---SIRS 234
Query: 363 GAIITVTCTLMRK 375
G + V L R+
Sbjct: 235 GGPVVVLVQLERE 247
Score = 80.0 bits (196), Expect = 4e-16
Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 4/114 (3%)
Query: 522 DDDDWEKYQTGLNKRDKVLEGR-SKQSHSVHCPRFPEDKQEFWWIYISDRKSRTLLTSPY 580
+ D + ++G V R + + V P FP+ ++E WW+ I D KS +L++
Sbjct: 225 EVVDKDSIRSGGPVVVLVQLEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKR 284
Query: 581 HITELVDQEQVQLKFTAPRWPGVYTFSVCLRCDSYLGFDQMQDIKLDVKEAPEV 634
L + +V+L F AP G + +++ D+Y+G DQ +DVKEA
Sbjct: 285 --LTLQQKAKVKLDFVAP-ATGAHNYTLYFMSDAYMGCDQEYKFSVDVKEAETD 335
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ
domain, endoplasmic reticulum, oxidor; 1.84A {Mus
musculus}
Length = 210
Score = 71.0 bits (174), Expect = 5e-14
Identities = 23/56 (41%), Positives = 37/56 (66%), Gaps = 3/56 (5%)
Query: 13 GASEASIKKAYRKQSLILHPDKETGDEKA---FMKLTKAYQALTDEESRRNFEKYG 65
AS I++A++K +L LHPDK + A F+K+ +AY+ L DE+ R+ ++KYG
Sbjct: 13 TASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYG 68
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase
regulat protein complex; 3.10A {Simian virus 40} PDB:
2pkg_C
Length = 174
Score = 69.9 bits (171), Expect = 6e-14
Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Query: 10 KPSGASEASIKKAYRKQSLILHPDKETGDEKAFMKLTKAYQALTDEESRRNFEKYGNPDG 69
+ + + ++KAY K+ HPDK GDE+ K+ Y+ + D + +G
Sbjct: 21 RSAWGNIPLMRKAYLKKCKEFHPDK-GGDEEKMKKMNTLYKKMEDGVKYAHQPDFGGFWD 79
Query: 70 PGAMSFGIALPSY 82
+ P
Sbjct: 80 ATEVFASSLNPGV 92
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5,
structural genomics, PSI-2, protein structure
initiative; 1.25A {Saccharomyces cerevisiae}
Length = 92
Score = 66.6 bits (163), Expect = 1e-13
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 13 GASEASIKKAYRKQSLILHPDKETGDEKAFMKLTKAYQALTDEESRRNFEKYG------N 66
A+E +KK YRK +L HPDK TGD + F ++++A++ L D + R +++YG
Sbjct: 19 SANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREIYDQYGLEAARSG 78
Query: 67 PDGPGAMSFG 76
G G
Sbjct: 79 GPSFGPGGPG 88
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain,
all helix protein, chaperone, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 65.9 bits (161), Expect = 2e-13
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 7/73 (9%)
Query: 11 PSGASEASIKKAYRKQSLILHPDKETGDEKA---FMKLTKAYQALTDEESRRNFEKYG-- 65
PS A++A IK AY +Q + HPD+ +G +A F ++++AY L RR +++
Sbjct: 26 PSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGLLS 85
Query: 66 --NPDGPGAMSFG 76
+ GPG+
Sbjct: 86 DEDLRGPGSGPSS 98
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor
protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Length = 114
Score = 65.6 bits (160), Expect = 4e-13
Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 10 KPSGASEASIKKAYRKQSLILHPDKETGDEKAFMKLTKAYQALTDEESRRNFEKYGNPDG 69
+ + + ++KAY K+ HPDK GDE+ K+ Y+ + D + +G
Sbjct: 18 RSAWGNIPLMRKAYLKKCKEFHPDK-GGDEEKMKKMNTLYKKMEDGVKYAHQPDFGGFWD 76
Query: 70 PGAMSFG 76
+
Sbjct: 77 ATEIPTY 83
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR
{Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Length = 103
Score = 64.9 bits (159), Expect = 4e-13
Identities = 22/67 (32%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 13 GASEASIKKAYRKQSLILHPDKETGDEKA---FMKLTKAYQALTDEESRRNFEKYGNPDG 69
A E I+KAY++ ++ HPD+ GD++A F ++ +AY+ LTD + R +++YG+
Sbjct: 14 TAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAF 73
Query: 70 PGAMSFG 76
G
Sbjct: 74 EQGGMGG 80
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon,
chaperone; NMR {Homo sapiens}
Length = 99
Score = 63.9 bits (156), Expect = 1e-12
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 10/82 (12%)
Query: 11 PSGASEASIKKAYRKQSLILHPDKETGD----EKAFMKLTKAYQALTDEESRRNFEKYG- 65
P AS IKKAYR+++L HPDK + EK F ++ +AY+ L+D+ R +++YG
Sbjct: 11 PRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGR 70
Query: 66 -----NPDGPGAMSFGIALPSY 82
GP G P
Sbjct: 71 EGLTGTGTGPSRAEAGSGGPGL 92
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated
protein RAP1, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 90
Score = 62.0 bits (151), Expect = 3e-12
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 11 PSGASEASIKKAYRKQSLILHPDK--ETGDEKAFMKLTKAYQALTDEESRRNFE 62
GAS + KAYRK +++LHPDK G E AF + A AL
Sbjct: 36 KPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSGPSS 89
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone,
APC90013.2, structural genomics, protein structure
initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Length = 73
Score = 61.5 bits (150), Expect = 3e-12
Identities = 21/55 (38%), Positives = 36/55 (65%)
Query: 11 PSGASEASIKKAYRKQSLILHPDKETGDEKAFMKLTKAYQALTDEESRRNFEKYG 65
AS+ +KKAYRK +L HPDK + F ++++AY+ L+DE+ R+ +++ G
Sbjct: 17 KPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQIYDQGG 71
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 109
Score = 62.8 bits (153), Expect = 4e-12
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 13 GASEASIKKAYRKQSLILHPDKETGDEKA---FMKLTKAYQALTDEESRRNFEKYGNPDG 69
A+ IKK+YRK +L HPDK + +A F ++ A+ LTD R ++KYG+
Sbjct: 28 NATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSLGL 87
Query: 70 PGAMSFG 76
A FG
Sbjct: 88 YVAEQFG 94
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 112
Score = 62.5 bits (152), Expect = 4e-12
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 13 GASEASIKKAYRKQSLILHPDKETGDEKA---FMKLTKAYQALTDEESRRNFEKYG---- 65
+S I ++ ++L HPDK + KA F KL KA + LT+EESR ++ +
Sbjct: 31 LSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRSQM 90
Query: 66 NPDGPGAMSFG 76
+ +
Sbjct: 91 SMPFQQWEALN 101
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain,
helix-turn-helix motif, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 92
Score = 60.8 bits (148), Expect = 1e-11
Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
Query: 13 GASEASIKKAYRKQSLILHPDKETGD----EKAFMKLTKAYQALTDEESRRNFEKYG 65
AS IKKAYRK +L HPDK + EK F +++AY+ L+D + R +++ G
Sbjct: 20 SASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAG 76
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain,
chaperone; NMR {Homo sapiens}
Length = 155
Score = 61.4 bits (149), Expect = 3e-11
Identities = 17/73 (23%), Positives = 38/73 (52%), Gaps = 9/73 (12%)
Query: 13 GASEASIKKAYRKQSLILHPDKETGD---------EKAFMKLTKAYQALTDEESRRNFEK 63
A+ + +K+ Y+K L+ HPDK++ D + F+++ +A++ L +EE++R ++
Sbjct: 21 SANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDL 80
Query: 64 YGNPDGPGAMSFG 76
D +
Sbjct: 81 QRCEDDLRNVGPV 93
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 58.8 bits (143), Expect = 4e-11
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 13 GASEASIKKAYRKQSLILHPDKETGDEKA---FMKLTKAYQALTDEESRRNFEKYG 65
AS+ IKKAY + + HPD D KA F +L +AY+ L+DE R+ ++ YG
Sbjct: 18 NASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYG 73
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens}
Length = 82
Score = 58.4 bits (142), Expect = 6e-11
Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 4/59 (6%)
Query: 11 PSGASEASIKKAYRKQSLILHPDKETGD----EKAFMKLTKAYQALTDEESRRNFEKYG 65
P AS +IKKAYRK +L HPDK + E+ F ++ +AY+ L+D + R +++YG
Sbjct: 18 PRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYG 76
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP:
a.2.3.1
Length = 77
Score = 57.6 bits (140), Expect = 9e-11
Identities = 26/55 (47%), Positives = 37/55 (67%), Gaps = 2/55 (3%)
Query: 13 GASEASIKKAYRKQSLILHPDK--ETGDEKAFMKLTKAYQALTDEESRRNFEKYG 65
GAS+ IK+AYR+Q+L HPDK E G E+ F ++ +AY L+D R F++YG
Sbjct: 14 GASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYG 68
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics,
molecular chaperone, NPPSFA; NMR {Mus musculus}
Length = 88
Score = 57.8 bits (140), Expect = 1e-10
Identities = 26/55 (47%), Positives = 39/55 (70%), Gaps = 2/55 (3%)
Query: 13 GASEASIKKAYRKQSLILHPD--KETGDEKAFMKLTKAYQALTDEESRRNFEKYG 65
AS+A IKKAY+K + HPD K+ G E F++++KAY+ L++EE R N++ YG
Sbjct: 28 TASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYDHYG 82
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 88
Score = 57.3 bits (139), Expect = 2e-10
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 13 GASEASIKKAYRKQSLILHPDK--ETGDEKAFMKLTKAYQALTDEESRRNFEKYGNPDGP 70
ASE IKKA+ K ++ HPDK E F ++ +AY+ L+D R+ ++ G+
Sbjct: 18 SASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYDTLGHSAFT 77
Query: 71 GAMSFG 76
Sbjct: 78 SGKGQS 83
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 78
Score = 56.5 bits (137), Expect = 3e-10
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 13 GASEASIKKAYRKQSLILHPD--KETGDEKAFMKLTKAYQALTDEESRRNFEKYG 65
GAS+ +KKAYR+ +L HPD G +AF + AY L++ E R+ ++++G
Sbjct: 18 GASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFG 72
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of
helices, viral protein; NMR {Murine polyomavirus} SCOP:
a.2.3.1
Length = 79
Score = 56.1 bits (135), Expect = 3e-10
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 13 GASEASIKKAYRKQSLILHPDKETGDEKAFMKLTKAYQALTDEESRRNFEKYG 65
+++AY++QSL+LHPDK G +L + E G
Sbjct: 24 WGDFGRMQQAYKQQSLLLHPDK-GGSHALMQELNSLWGTFKTEVYNLRMNLGG 75
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, chaperone; NMR {Mus musculus} SCOP:
a.2.3.1
Length = 94
Score = 56.7 bits (137), Expect = 3e-10
Identities = 16/68 (23%), Positives = 38/68 (55%), Gaps = 9/68 (13%)
Query: 13 GASEASIKKAYRKQSLILHPDKETGD---------EKAFMKLTKAYQALTDEESRRNFEK 63
A+ + +K+ Y+K L+ HPDK++ D + F+++ +A++ L +EE+++ ++
Sbjct: 27 SANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDL 86
Query: 64 YGNPDGPG 71
+ G
Sbjct: 87 QRSGPSSG 94
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural
genomics, PSI-2, Pro structure initiative; 1.68A
{Caenorhabditis elegans}
Length = 109
Score = 55.5 bits (134), Expect = 1e-09
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 14 ASEASIKKAYRKQSLILHPDKETGD------EKAFMKLTKAYQALTDEESRRNFEKYG 65
+ + KAYR + HPD+ E+ F + AY+ L D+E++ N++ Y
Sbjct: 28 FDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYL 85
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics,
PSI-2, protein STRU initiative; 2.90A {Klebsiella
pneumoniae subsp} PDB: 2kqx_A
Length = 329
Score = 57.3 bits (139), Expect = 9e-09
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Query: 13 GASEASIKKAYRKQSLILHPD--KETGDEKAFMKLTKAYQALTDEESRRNFEKYGNPDGP 70
+IK AYR+ + HPD KE E F L +A++ L DE+ R +++
Sbjct: 39 TDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQHRND 98
Query: 71 GAMSFG 76
Sbjct: 99 PGFGRQ 104
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 58.3 bits (140), Expect = 1e-08
Identities = 91/680 (13%), Positives = 187/680 (27%), Gaps = 211/680 (31%)
Query: 31 HPDKETGDEK-AFMKLTKAYQALTDEESRRNFEKYGNPDGPGAMSFGIALPSYIVEKENS 89
H D ETG+ + + + ++ + NF+ D +P I+ KE
Sbjct: 6 HMDFETGEHQYQYKDILSVFE----DAFVDNFDCKDVQD----------MPKSILSKEE- 50
Query: 90 VWVLGLYALVFMVALPTAVGMWWYKSIRYTGDKVLLETINFYYAFFQITPHMALKRVLMI 149
+ ++ AV +L + F
Sbjct: 51 --------IDHIIMSKDAV-----SGTLRLFWTLLSKQEEMVQKFV-------------- 83
Query: 150 LGASLEFDRRFNSEIIERPSDEIEVPQLIRQIPNLGEKNRER-----PLYHKYSIKARAL 204
L + +F ++ E P ++ + + + R+R ++ KY++
Sbjct: 84 -EEVLRINYKF---LMSPIKTEQRQPSMMTR---MYIEQRDRLYNDNQVFAKYNVSRLQP 136
Query: 205 IYA---HLSNMQ-----------------LTSETLEADRM---------YI-VKKC--PY 232
L ++ + + + ++ ++ +K C P
Sbjct: 137 YLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE 196
Query: 233 LLQEMVTCISQLILLAYAQRVPRLIHIETLENVMKLCPMIVQGMWDFKNPLLQLPYVTDD 292
+ EM+ + I + R +I+ + ++ + ++N LL V +
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL----VLLN 252
Query: 293 -----HLKHF--ICK----KRYIKSLQQFAQMKNEERRSVVK----FMNDEQYSDMLKVL 337
F CK R+ K + F S+ DE S +LK L
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRF-KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311
Query: 338 GNMPYVDLHVQ-----PEVI--------DDEATTEYTA-------GAIITVTC-----TL 372
+ DL + P + D AT + II +
Sbjct: 312 -DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370
Query: 373 MRK--PMSVLFGDDT-IKVQFLEPSKEGEGEIEEEEEKPNGTITPVVNKEKQQTHRPVWM 429
RK +F I L + + VVNK +
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLS-LIWFDVIKSDVMV--------VVNK----------L 411
Query: 430 KNK----KGGKKKKFT--------KNKHDKKSSGQKKITNTVEQTEAPADVAKVEKKDTP 477
K K+ + K K + + + + I V+ P + D
Sbjct: 412 HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI---VDHYNIPK---TFDSDDLI 465
Query: 478 EESKD------------VSSESEEESDLSDV-ENDEVVDKKEKNEDSNNKSEESSDDDDD 524
D E + V + +++K +++ + + S +
Sbjct: 466 PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ 525
Query: 525 DWEKYQTGLNKRDKVLEGRSKQSHSVHCPRFPEDKQEFWWIYISDRKSRTLLTSPYHITE 584
+ Y+ + D E R +F + L+ S Y T+
Sbjct: 526 QLKFYKPYICDNDPKYE------------RLVNAILDF-----LPKIEENLICSKY--TD 566
Query: 585 LVDQEQVQLKFTAPRWPGVY 604
L +++ A ++
Sbjct: 567 L-----LRIALMAED-EAIF 580
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin,
endoplasmic reticulum, oxidoreducta; 2.40A {Mus
musculus}
Length = 780
Score = 57.5 bits (138), Expect = 1e-08
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
Query: 13 GASEASIKKAYRKQSLILHPDKETGDEKA---FMKLTKAYQALTDEESRRNFEKYGNPDG 69
AS I++A++K +L LHPDK + A F+K+ +AY+ L DE+ R+ ++KYG
Sbjct: 32 TASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGL 91
Query: 70 PGAMSFGIALPSYIVEKENSVWVLGLYALVFMVALPTAVG 109
SY + AV
Sbjct: 92 EDNQGGQYESWSYYRYDFGIYDDDPEIITLERREFDAAVN 131
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 57.0 bits (138), Expect = 2e-08
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 14 ASEASIKKAYRKQSLILHPDKETGD------EKAFMKLTKAYQALTDEESRRNF 61
A + I KAYRK +L HPD + EK F+ + A + L+D E R+ F
Sbjct: 394 AKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKF 447
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14;
DNAJ-fold, chaperone, protein transport; HET: FLC;
2.00A {Saccharomyces cerevisiae}
Length = 71
Score = 48.1 bits (115), Expect = 2e-07
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 9 LKPSGASEASIKKAYRKQSLILHPDKETGDEKAFMKLTKAYQALTDEESRR 59
L + ++ +K+ +RK L HPDK G K+ +A L +
Sbjct: 22 LTENTLTKKKLKEVHRKIMLANHPDKG-GSPFLATKINEAKDFLEKRGISK 71
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding,
hydrolase, nucleotide- binding; 2.00A {Pyrococcus
furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Length = 720
Score = 54.1 bits (130), Expect = 2e-07
Identities = 29/242 (11%), Positives = 69/242 (28%), Gaps = 28/242 (11%)
Query: 125 LETINFYYAFFQ-ITPHMALKRVLMILGASLEFD--RRFNSEIIERPSDEIEVPQLIR-Q 180
T + + + + ++ + + E + E +
Sbjct: 493 PYTAKMFKDKMEEVVKDPNPIGIFHLISLTPDITPFNYSKREFERLEEEYYEFKDRLYFD 552
Query: 181 IPNLGEKNRERPLYHKYSIKARALIYAHLSNMQLTS-----ETLEADRMYIVKKCPYLLQ 235
P + + + K ++ A ++ + D IV+ +L+
Sbjct: 553 DPYISGYDPYLERKFFRAFKTALVLLAWINEVPEGEIVEKYSVEPGDIYRIVETAEWLVY 612
Query: 236 EMVTCISQLILLAYAQRVPRLIHIETLENVMKLCPMIVQGMWDFKNPLLQLPYVTDDHLK 295
+ L + + L + G+ + PL+QLP V +
Sbjct: 613 SLKEIAKVLGAYEIV------------DYLETLRVRVKYGIREELIPLMQLPLVGRRRAR 660
Query: 296 HFICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGNMPYVDLHVQP--EVID 353
+S++ +Q + EE + + + K LG V + +P +D
Sbjct: 661 ALY--NSGFRSIEDISQARPEELLKIEGI-GVKTVEAIFKFLG--KNVKISEKPRKSTLD 715
Query: 354 DE 355
Sbjct: 716 YF 717
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function; NMR {Homo sapiens} SCOP:
a.2.3.1
Length = 88
Score = 48.6 bits (116), Expect = 2e-07
Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 7/57 (12%)
Query: 13 GASEASIKKAYRKQSLILHPDKETGD----EKAFMKLTKAYQALTDEESRRNFEKYG 65
E+ KK R+ L HPDK + + F L L E + ++
Sbjct: 27 KLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRL---EKQAFLDQNA 80
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP:
a.2.3.1 PDB: 1xi5_J
Length = 182
Score = 50.6 bits (120), Expect = 3e-07
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 14 ASEASIKKAYRKQSLILHPDKETGD------EKAFMKLTKAYQALTDEESRRNF 61
+ +KK YRK L++HPDK TG + FM+L A+ ++ + +
Sbjct: 129 VTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 182
>2qwo_B Putative tyrosine-protein phosphatase auxilin;
chaperone-cochaperone complex, ATP-binding,
nucleotide-bindi nucleus, phosphorylation, stress
response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B*
2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Length = 92
Score = 44.6 bits (105), Expect = 6e-06
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 14 ASEASIKKAYRKQSLILHPDKETGD------EKAFMKLTKAYQALTDE 55
+ +KK YRK L++HP K TG + FM+L A+ ++
Sbjct: 45 VTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFENQ 92
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Length = 181
Score = 46.9 bits (111), Expect = 6e-06
Identities = 12/53 (22%), Positives = 20/53 (37%)
Query: 14 ASEASIKKAYRKQSLILHPDKETGDEKAFMKLTKAYQALTDEESRRNFEKYGN 66
++ ++K YR+ HPD + L +AY L D R +
Sbjct: 30 IDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPLRRSQYMLKLL 82
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.9 bits (103), Expect = 3e-04
Identities = 38/204 (18%), Positives = 69/204 (33%), Gaps = 69/204 (33%)
Query: 476 TPEESKDVSSESEEE--------SDLSDVENDEVVDKKEKNEDSNNKSEESSDDDDDDWE 527
P +D S E+ E S+L+ + + V+K +N+ +
Sbjct: 320 PPSILED-SLENNEGVPSPMLSISNLTQEQVQDYVNK------TNSHLPAG--------K 364
Query: 528 KYQTGL-NKRDKV--------LEGRSKQSHSVHCPRFPEDKQ---EFWWIYISDRK---- 571
+ + L N + L G + P Q F S+RK
Sbjct: 365 QVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAP--SGLDQSRIPF-----SERKLKFS 417
Query: 572 SRTL-LTSPYH------ITELV--DQEQVQLKFTAPRW--PGVYTFSVCLRCDSYLGFDQ 620
+R L + SP+H ++L+ D + + F A P VY D++ G D
Sbjct: 418 NRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP-VY--------DTFDGSD- 467
Query: 621 MQDIKLDVKE--APEVPTEHPQWE 642
++ + + E + +WE
Sbjct: 468 LRVLSGSISERIVDCIIRLPVKWE 491
Score = 43.9 bits (103), Expect = 3e-04
Identities = 88/560 (15%), Positives = 154/560 (27%), Gaps = 208/560 (37%)
Query: 74 SFGIALP----SYIVEKENSVWVLGLYA--LVFMVAL--PTAVGMWWYKSIRYTGDKVLL 125
F LP + + E + L L ++ +L P+ VG D+VL
Sbjct: 36 QFNKILPEPTEGFAADDEPTT-PAELVGKFLGYVSSLVEPSKVG---------QFDQVLN 85
Query: 126 ETIN-FYYAFFQ---ITPHMALKRVLMILGASLEFDRR-----FNS-EIIERPSDEIEVP 175
+ F + + I H ++L +L + + + +RP D+
Sbjct: 86 LCLTEFENCYLEGNDI--HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNS 143
Query: 176 QLIRQIP----NL-----GEKNRE------RPLYHKYSIKARALIYAHLSNMQ-LTSETL 219
L R + L G+ N + R LY Y + LI + L TL
Sbjct: 144 ALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTL 203
Query: 220 EADRMYIVKKCPYLLQEMVTCISQLILLAYAQRVPRLIHIETLENVMKLCPMIVQGMWDF 279
+A++++ + ++I W
Sbjct: 204 DAEKVF----------------------------TQGLNILE---------------W-- 218
Query: 280 KNPLLQLPYVT--DDHLKH------FICKKRYIKSLQQFAQMKNEERRSVVKFMNDEQYS 331
L+ P T D+L I + Q A Y
Sbjct: 219 ----LENPSNTPDKDYLLSIPISCPLIG-------VIQLA-----------------HYV 250
Query: 332 DMLKVLGNMPYVDLHVQPEVIDDEATTEYTAGAIITVTCT-----------LMRKPMSVL 380
K+LG P E+ + ++T +RK ++VL
Sbjct: 251 VTAKLLGFTP-------GELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVL 303
Query: 381 F-----GDDTIKVQFLEPSKEGEGEIEEEEEKPNGTITP---VVNKEKQQTHRPVWMKNK 432
F + L PS +E+ E G +P + N ++Q V N
Sbjct: 304 FFIGVRCYEAYPNTSLPPS-----ILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNS 358
Query: 433 KGGKKKKFT---KNKHDKKS-SG------------QK-KITNTVEQTEAPADVAKVEKKD 475
K+ N SG +K K + ++Q+ P E+K
Sbjct: 359 HLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFS----ERK- 413
Query: 476 TPEESKD---VSS-------ESEEESDLSDVENDEVVDKKEK-------NEDSNNKSEES 518
+ S V+S + D+ + V + D ++ S
Sbjct: 414 -LKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLS 472
Query: 519 SDDDDD----------DWEK 528
+ WE
Sbjct: 473 GSISERIVDCIIRLPVKWET 492
Score = 36.6 bits (84), Expect = 0.054
Identities = 48/331 (14%), Positives = 86/331 (25%), Gaps = 128/331 (38%)
Query: 613 DSYLGFDQMQDI----KLDVKEAPEVPTEHPQWEMSGEEDEGDEEMGGSDVSEFTTDEDV 668
D Y F++++D+ + V + + E + D G ++ E+ +
Sbjct: 167 DDY--FEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSN 224
Query: 669 ---EDDLKLEPCA-------QLMLY--------LRP-------------------AAAPH 691
+D L P + QL Y P A A
Sbjct: 225 TPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIA 284
Query: 692 AGRLMKNNSTNSSDRLRDLCSVGRRRVLSESFSTTQERPILPR---------PTPGAPIM 742
++ + + L +G R E++ T P + P+P M
Sbjct: 285 ETDSWESFFVSVRKAITVLFFIGVRC--YEAYPNTSLPPSILEDSLENNEGVPSP----M 338
Query: 743 VA--------------------PTT---SVQFLNGSKATQFVFV--PANSL-------QP 770
++ P + +NG A V V P SL +
Sbjct: 339 LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNG--AKNLV-VSGPPQSLYGLNLTLRK 395
Query: 771 VPIPPAK---KRGYVKQKPPPI---LP--AP------APTVPTPIA----PEFLWS---- 808
P + + ++K LP +P P ++
Sbjct: 396 AKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDI 455
Query: 809 -------------RESKMSIANRIVSEATTM 826
R SI+ RIV +
Sbjct: 456 QIPVYDTFDGSDLRVLSGSISERIVDCIIRL 486
Score = 30.0 bits (67), Expect = 5.2
Identities = 25/118 (21%), Positives = 32/118 (27%), Gaps = 46/118 (38%)
Query: 718 VLSESFSTTQERPILPRPTPGAPIMVAPTTSV----QFL-------NGSKATQFV----- 761
L E F+ LP PT G PTT +FL SK QF
Sbjct: 32 QLQEQFNKI-----LPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNL 86
Query: 762 ----F------------VPANSLQPVPIPPAKKRGYVK---------QKPPPILPAPA 794
F + A LQ K + +K ++P A
Sbjct: 87 CLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA 144
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like
J-domain containing protein, JAC1, chloroplast
accumulation response; 1.80A {Arabidopsis thaliana}
Length = 106
Score = 38.8 bits (90), Expect = 9e-04
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 10/52 (19%)
Query: 14 ASEASIKKAYRKQSLILHPDKETGD----------EKAFMKLTKAYQALTDE 55
+++K+Y++ LILHPDK EK F L +A+
Sbjct: 52 IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTL 103
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304,
center for structural genomics of infectious diseases,
CSGI; 2.15A {Vibrio cholerae}
Length = 174
Score = 40.3 bits (94), Expect = 0.001
Identities = 10/61 (16%), Positives = 17/61 (27%), Gaps = 8/61 (13%)
Query: 14 ASEASIKKAYRKQSLILHPDKETGD--------EKAFMKLTKAYQALTDEESRRNFEKYG 65
+ + +R HPD + ++ AYQ L D R +
Sbjct: 18 LDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLSL 77
Query: 66 N 66
Sbjct: 78 Q 78
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A
{Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Length = 171
Score = 39.2 bits (91), Expect = 0.002
Identities = 8/61 (13%), Positives = 18/61 (29%), Gaps = 8/61 (13%)
Query: 14 ASEASIKKAYRKQSLILHPDKETGD--------EKAFMKLTKAYQALTDEESRRNFEKYG 65
++ ++ HPDK + + +A+Q L R +
Sbjct: 15 LDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSL 74
Query: 66 N 66
+
Sbjct: 75 H 75
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 39.4 bits (91), Expect = 0.002
Identities = 14/80 (17%), Positives = 32/80 (40%), Gaps = 11/80 (13%)
Query: 455 ITNTVEQTEAPADVAK--------VEKKDTPEESKDVSSESEEESDLSDVENDEVVDKKE 506
I T+ P + K +++ D + + + + DL + N ++ E
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEW-NQRQSEQVE 132
Query: 507 KNEDSNNKSEES--SDDDDD 524
KN+ +N ++++ D D
Sbjct: 133 KNKINNRIADKAFYQQPDAD 152
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal
helicase, DNA repair,, DNA binding protein/DNA complex;
3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2
c.37.1.19 c.37.1.19 PDB: 2p6u_A
Length = 702
Score = 39.4 bits (92), Expect = 0.006
Identities = 19/198 (9%), Positives = 60/198 (30%), Gaps = 22/198 (11%)
Query: 123 VLLETINFYYAFFQITPHMALKRVLMILGASLEFDR---RFNSEIIERPSDEIEVPQLIR 179
+ T ++ ++ L ++ + + +R R +E + + + +
Sbjct: 488 IDPLTGFIFHDVLS-RMELSDIGALHLICRTPDMERLTVRKTDSWVEEEAFRL--RKELS 544
Query: 180 QIPNLGEKNRERPLYHKYSIKARALIYAHLSNMQLTSETLEADRMYIVKKCPYLLQEMVT 239
P+ + L +K + + I K ++
Sbjct: 545 YYPSDFSVEYDWFLSE---VKTALCLKDWIEEKDEDE---------ICAKYGIAPGDLRR 592
Query: 240 CISQLILLAYAQRVPRLIHIETLENVMKLCPMIVQGMWDFKNPLLQLPYVTDDHLKHFIC 299
+ L+ A + R+ +V L I G+ + L+++ ++ +
Sbjct: 593 IVETAEWLSNA--MNRIAEEVGNTSVSGLTERIKHGVKEELLELVRIRHIGRVRAR--KL 648
Query: 300 KKRYIKSLQQFAQMKNEE 317
I++ + + + +
Sbjct: 649 YNAGIRNAEDIVRHREKV 666
>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex,
inter-protein beta sheet, protein-protein, metal
transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A
{Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A
Length = 229
Score = 35.1 bits (80), Expect = 0.065
Identities = 20/89 (22%), Positives = 30/89 (33%), Gaps = 3/89 (3%)
Query: 719 LSESFSTTQERPILPRPTPGAPI---MVAPTTSVQFLNGSKATQFVFVPANSLQPVPIPP 775
L S ++ P P PI MV P + V P +P+P PP
Sbjct: 13 LVPRGSHMSVHQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPP 72
Query: 776 AKKRGYVKQKPPPILPAPAPTVPTPIAPE 804
+ +++ P P P P P+
Sbjct: 73 KEAPVVIEKPKPKPKPKPKPVKKVQEQPK 101
>3omb_A Extracellular solute-binding protein, family 1; PSI-2, midwest
center for structural genomics, protein struc
initiative, MCSG; 2.10A {Bifidobacterium longum subsp}
Length = 535
Score = 34.1 bits (78), Expect = 0.24
Identities = 15/150 (10%), Positives = 42/150 (28%), Gaps = 18/150 (12%)
Query: 398 EGEIEEEEEKPNGTITPVVNKEKQQTHRPVWMKNKKGGKKKKFTKNKHDKKSSGQKKITN 457
G+ + + T+ + ++ + G K D + ++
Sbjct: 387 FGKAITKTGEHEYTVDNDKLSQLTGDNQYPGLSELLVGWIPDEATIKGDTHADELIEVNK 446
Query: 458 TVEQTEAPADVAKVEKKDTPEESKDVSSESEEES----DLSDVENDEVVDKKEKNEDSNN 513
E+ + D K D S++ + + ++ + +
Sbjct: 447 VYEEQRSHFDPVKDYIPDYVNMDNMDPSDATKLNTNNAEIFNTTMQKTATWM-------- 498
Query: 514 KSEESSDDDDDDWEKYQTGLNKR--DKVLE 541
S D++W+ Y L+ + +
Sbjct: 499 ----SKGGIDEEWDAYCKQLDSIGLQESTK 524
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural
genomics medical relev protein structure initiative,
PSI-2; 3.00A {Homo sapiens}
Length = 207
Score = 32.8 bits (74), Expect = 0.34
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 8/53 (15%)
Query: 14 ASEASIKKAYRKQSLILHPDKETGD--------EKAFMKLTKAYQALTDEESR 58
A ++ Y++ ++HPD + EK + AY+ L SR
Sbjct: 57 VDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSR 109
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A
{Geobacillus kaustophilus}
Length = 213
Score = 32.4 bits (74), Expect = 0.50
Identities = 12/82 (14%), Positives = 23/82 (28%)
Query: 449 SSGQKKITNTVEQTEAPADVAKVEKKDTPEESKDVSSESEEESDLSDVENDEVVDKKEKN 508
G+K++ E + E+ E + EE E E E+
Sbjct: 2 EQGEKQVMEQATYDEPEREQPIEEEAAPQPEEESGGVPLEEAGGEEAAEPAEKAPTAEEL 61
Query: 509 EDSNNKSEESSDDDDDDWEKYQ 530
+ + E + +Y
Sbjct: 62 AAAKAQIAELEAKLSEMEHRYL 83
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid
cyclase fold, DDXXXXD motif, NDXXSXXXE MOT
methylisoborneol biosynthesis; HET: GST; 1.80A
{Streptomyces coelicolor} PDB: 3v1x_A*
Length = 433
Score = 32.0 bits (72), Expect = 0.86
Identities = 15/83 (18%), Positives = 21/83 (25%), Gaps = 12/83 (14%)
Query: 724 STTQERPILPRPTPGAPIMVAPTTSVQFLNGSKATQFVFVPANSLQPVPIPPAKKRGYVK 783
S+ P MV P+ SV + + + P P PP
Sbjct: 3 SSHHHHHHSSGLVPRGSHMVIPSASVT---SAASDFLAALHPPVTVPDPAPPP------P 53
Query: 784 QKPPPILPA---PAPTVPTPIAP 803
P P +V I
Sbjct: 54 PAPAAGNPPDTVTGDSVLQRILR 76
Score = 30.9 bits (69), Expect = 2.1
Identities = 11/74 (14%), Positives = 16/74 (21%), Gaps = 9/74 (12%)
Query: 730 PILPRPTPGAPIMVAPTTSVQFLNGSKATQFVFVPANSLQPVPIPPAKKRGYVKQKPPPI 789
+ P + + FL V PA P P PP
Sbjct: 14 LVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAG---------NPPDT 64
Query: 790 LPAPAPTVPTPIAP 803
+ + P
Sbjct: 65 VTGDSVLQRILRGP 78
>2dyt_A Autophagy-related protein 3; E2 fold, ligase; 2.50A {Saccharomyces
cerevisiae}
Length = 312
Score = 30.6 bits (68), Expect = 2.1
Identities = 25/151 (16%), Positives = 48/151 (31%), Gaps = 8/151 (5%)
Query: 409 NGTITP---VVNKEKQQTHRPVWMKNKKGGKKKKFTKNKHDKKSSGQKKIT-----NTVE 460
G ITP V + P W N++ +K+ +K+
Sbjct: 27 TGQITPEEFVQAGDYLCHMFPTWKWNEESSDISYRDFLPKNKQFLIIRKVPCDKRAEQCV 86
Query: 461 QTEAPADVAKVEKKDTPEESKDVSSESEEESDLSDVENDEVVDKKEKNEDSNNKSEESSD 520
+ E P + K +D E+ SE E S + ++ E +
Sbjct: 87 EVEGPDVIMKGFAEDGDEDDVLEYIGSETEHVQSTPAGGTKDSSIDDIDELIQDMEIKEE 146
Query: 521 DDDDDWEKYQTGLNKRDKVLEGRSKQSHSVH 551
D++DD E++ + + R + +
Sbjct: 147 DENDDTEEFNAKGGLAKDMAQERYYDLYIAY 177
>1rm1_C Transcription initiation factor IIA large chain; yeast TFIIA, TBP
protein, ATA-box DNA, transcription/DNA complex; 2.50A
{Saccharomyces cerevisiae}
Length = 286
Score = 29.9 bits (65), Expect = 3.2
Identities = 23/118 (19%), Positives = 36/118 (30%)
Query: 408 PNGTITPVVNKEKQQTHRPVWMKNKKGGKKKKFTKNKHDKKSSGQKKITNTVEQTEAPAD 467
T E N G T + + N T
Sbjct: 112 SGETNINTNTVEATNNSGATLNTNTSGNTNADVTSQPKIEVKPEIELTINNANITTVENI 171
Query: 468 VAKVEKKDTPEESKDVSSESEEESDLSDVENDEVVDKKEKNEDSNNKSEESSDDDDDD 525
+ EKKD E+ +DV +E+ + V+ +K+ D++ E D DDD
Sbjct: 172 DDESEKKDDEEKEEDVEKTRKEKEQIEQVKLQAKKEKRSALLDTDEVGSELDDSDDDY 229
Score = 29.5 bits (64), Expect = 4.8
Identities = 14/118 (11%), Positives = 38/118 (32%)
Query: 408 PNGTITPVVNKEKQQTHRPVWMKNKKGGKKKKFTKNKHDKKSSGQKKITNTVEQTEAPAD 467
+G N + + + G ++ + + ++T +
Sbjct: 111 HSGETNINTNTVEATNNSGATLNTNTSGNTNADVTSQPKIEVKPEIELTINNANITTVEN 170
Query: 468 VAKVEKKDTPEESKDVSSESEEESDLSDVENDEVVDKKEKNEDSNNKSEESSDDDDDD 525
+ +K EE ++ ++ +E + + + +K ++ DD DDD
Sbjct: 171 IDDESEKKDDEEKEEDVEKTRKEKEQIEQVKLQAKKEKRSALLDTDEVGSELDDSDDD 228
>2y1v_A RRGB, cell WALL surface anchor family protein; structural protein,
major pilin, pilus assembly; 2.39A {Streptococcus
pneumoniae} PDB: 3rpk_A
Length = 605
Score = 30.3 bits (66), Expect = 3.6
Identities = 19/183 (10%), Positives = 37/183 (20%), Gaps = 1/183 (0%)
Query: 351 VIDDEATTEYTAGAIITVTCTLMRKPMSVLFGDDTIKVQFLEPSKEGEG-EIEEEEEKPN 409
D AGA T + V T + + + E + E
Sbjct: 322 TWVDATGAPIPAGAEATFDLVNAQTGKVVQTVTLTTDKNTVTVNGLDKNTEYKFVERSIK 381
Query: 410 GTITPVVNKEKQQTHRPVWMKNKKGGKKKKFTKNKHDKKSSGQKKITNTVEQTEAPADVA 469
G K++ K A +A
Sbjct: 382 GYSADYQEITTAGEIAVKNWKDENPKPLDPTEPKVVTYGKKFVKVNDKDNRLAGAEFVIA 441
Query: 470 KVEKKDTPEESKDVSSESEEESDLSDVENDEVVDKKEKNEDSNNKSEESSDDDDDDWEKY 529
+ K EE+ + ++ N + + + + D +
Sbjct: 442 NADNAGQYLARKADKVSQEEKQLVVTTKDALDRAVAAYNALTAQQQTQQEKEKVDKAQAA 501
Query: 530 QTG 532
Sbjct: 502 YNA 504
>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 402
Score = 29.8 bits (66), Expect = 3.8
Identities = 16/150 (10%), Positives = 39/150 (26%), Gaps = 16/150 (10%)
Query: 387 KVQFLEPSKEGEGEIEEEEEKPNGTITPVVNKEKQQTHRPVWMK------NKKGGKKKKF 440
K L + E I+ + E + + ++ +
Sbjct: 259 KSYALLDAAAVENLIKSDFEHSYC------RGSLRSEAKGIYCPFCSRWFKTSSVFESHL 312
Query: 441 TKNKHDKKSSGQKKITNTVEQTEAPADVAKVEKKDTPE--ESKDVSSESEEESDLSDVEN 498
H K S ++ + + E T E K + +E +++ +
Sbjct: 313 VGKIHKKNESKRRNFVYSEYKLHRYLKYLNDEFSRTRSFVERKLAFTANERMAEMDILTQ 372
Query: 499 DEVVDKKEKNEDSNNKSEESSDDDDDDWEK 528
+ E +E+ + D +
Sbjct: 373 KYEAPAYDSTEKEG--AEQVDGEQRDGQLQ 400
>1xr0_B FGFR signalling adaptor SNT-1; phosphotyrosine binding domain, PTB,
TRK, NPXPY motif,, signaling protein/growth factor
receptor complex; NMR {Homo sapiens} SCOP: b.55.1.2
Length = 129
Score = 28.5 bits (63), Expect = 4.7
Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 597 APRWPGVYTFSVCLRCDSYLGFDQ-MQDIKLDVKEAPEVPTEHPQWEMSGE 646
G++ F + + + MQ+ ++V E P V + Q E+
Sbjct: 73 CQTGQGIFAFKCARAEELFNMLQEIMQNNSINVVEEPVVERNNHQTELEVP 123
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis
lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A*
1u0y_A* 1yt2_A*
Length = 269
Score = 29.5 bits (67), Expect = 5.0
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
Query: 471 VEKKDTPEESKDVSSESEEESDLSDVENDEVVDKKEKNEDSNNKSEESSDDDDDDWE 527
K +T EE + ++EE + SD E +++EK + + DWE
Sbjct: 215 SSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKTVW-----DWE 266
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein,
ribosome biogenesis, RNA-binding, rRNA processing; NMR
{Saccharomyces cerevisiae} PDB: 2osq_A
Length = 108
Score = 28.0 bits (63), Expect = 5.1
Identities = 5/52 (9%), Positives = 15/52 (28%), Gaps = 5/52 (9%)
Query: 20 KKAYRKQSLILHPDKETGDEKAFMKLTKAY-----QALTDEESRRNFEKYGN 66
+ L+ ++ + T+ + + + E F +G
Sbjct: 6 HHHHHSSGLVPRGSHMHHRQEGELSNTRLFVRPFPLDVQESELNEIFGPFGP 57
>2zjr_S 50S ribosomal protein L25; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.53.1.1 PDB: 1njm_T* 1nwx_T* 1njp_T*
1xbp_T* 2zjp_S* 2zjq_S 1nwy_T 3cf5_S* 3dll_S* 3pio_S*
3pip_S* 1nkw_T 1sm1_T* 1yl3_V 2b66_Z 2b9n_Z 2b9p_Z
1pnu_T 1pny_T 1vor_W ...
Length = 237
Score = 29.3 bits (66), Expect = 5.2
Identities = 7/60 (11%), Positives = 18/60 (30%), Gaps = 2/60 (3%)
Query: 469 AKVEKKDTPEESKDVSSESEEESDLSDVENDEVVDKKEKNEDSNNKSEESSDDDDDDWEK 528
++ ++ E + + E E E + E+S+D+ +
Sbjct: 174 PRLTAEELEAEVQAAQVAGLVAAGELSEEAAE--AVLEGDASLEEVKAEASEDNAGTDSE 231
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone,
H2A/H2B, tata-DNA, transcription initiation, NC2,
negative cofactor, structural genomics, PSI; 2.62A {Homo
sapiens} SCOP: a.22.1.3
Length = 179
Score = 28.6 bits (63), Expect = 6.3
Identities = 11/83 (13%), Positives = 38/83 (45%)
Query: 443 NKHDKKSSGQKKITNTVEQTEAPADVAKVEKKDTPEESKDVSSESEEESDLSDVENDEVV 502
+ + ++K ++ +E P + ++++ +++ +E ++ L + +
Sbjct: 95 QECKTVALKRRKASSRLENLGIPEEELLRQQQELFAKARQQQAELAQQEWLQMQQAAQQA 154
Query: 503 DKKEKNEDSNNKSEESSDDDDDD 525
+ ++N++ S D++DDD
Sbjct: 155 QLAAASASASNQAGSSQDEEDDD 177
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold,
alpha/beta structure, rossman 6-hydroxylated FAD,
oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A
{Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1
PDB: 1naa_A*
Length = 546
Score = 29.5 bits (67), Expect = 6.3
Identities = 10/38 (26%), Positives = 14/38 (36%)
Query: 341 PYVDLHVQPEVIDDEATTEYTAGAIITVTCTLMRKPMS 378
Y V+P ++ Y A I T+T L S
Sbjct: 370 RYAQGTVRPGAASVNSSLPYNASQIFTITVYLSTGIQS 407
>3gdb_A Endo-D, putative uncharacterized protein SPR0440;
alpha-beta-barrels, cell WALL, peptidoglycan-anchor,
secreted, hydrolase; HET: PGE; 1.87A {Streptococcus
pneumoniae} PDB: 2xqx_A
Length = 937
Score = 29.5 bits (65), Expect = 6.6
Identities = 21/144 (14%), Positives = 49/144 (34%), Gaps = 6/144 (4%)
Query: 392 EPSKEGEGEIEEEEEKPNGTITPVVNKEKQQTHRPVWMKNKKGGKKKKFTKNKHDKKSSG 451
S E E E +++ G EK + + T+ ++
Sbjct: 36 LVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASNEAATTETAEAASAAK 95
Query: 452 QKKITNTVEQTEAPADVAKVEKKDTPEESKDVSSESEE-----ESDLSDVENDEVVDKKE 506
++ + E P+ AK + E + +++ +E E++ ++ E V K
Sbjct: 96 PEE-KASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAEANKTEKEVQPDVPKNT 154
Query: 507 KNEDSNNKSEESSDDDDDDWEKYQ 530
+ + + +S ++ WE
Sbjct: 155 EKTLKPKEIKFNSWEELLKWEPGA 178
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90,
heat shock protein, ATP-binding, heat shock,
nucleotide-binding, acetylation; HET: ATP; 3.1A
{Saccharomyces cerevisiae}
Length = 677
Score = 29.3 bits (66), Expect = 6.7
Identities = 15/81 (18%), Positives = 28/81 (34%), Gaps = 3/81 (3%)
Query: 383 DDTIKVQFLEPSKEGEGEIEEEEEKPNGTITPVVNKEKQQTHRPVWMKNKKGGKK---KK 439
++ +P E E EE++ K V E+ +P+W +N +
Sbjct: 232 EEKKDEDDKKPKLEEVDEEEEKKPKTKKVKEEVQEIEELNKTKPLWTRNPSDITQEEYNA 291
Query: 440 FTKNKHDKKSSGQKKITNTVE 460
F K+ + +VE
Sbjct: 292 FYKSISNDWEDPLYVKHFSVE 312
>2fhe_A GST, glutathione S-transferase; transferase-substrate complex; HET:
GSH; 2.30A {Fasciola hepatica} SCOP: a.45.1.1 c.47.1.5
PDB: 2wrt_A 1fhe_A*
Length = 216
Score = 28.6 bits (64), Expect = 6.8
Identities = 5/43 (11%), Positives = 14/43 (32%)
Query: 271 MIVQGMWDFKNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQM 313
MI D + + ++ Y K +++ ++
Sbjct: 93 MIEGAAVDLRQGISRISYQPKFEQLKEGYLKDLPTTMKMWSDF 135
>3gtu_B Glutathione S-transferase; conjugation, detoxification, cytosolic,
heterodimer; 2.80A {Homo sapiens} SCOP: a.45.1.1
c.47.1.5
Length = 224
Score = 28.6 bits (64), Expect = 7.1
Identities = 10/46 (21%), Positives = 20/46 (43%)
Query: 271 MIVQGMWDFKNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNE 316
+I + DF+ L++L Y +D + L+QF+ +
Sbjct: 102 IIENQVMDFRTQLIRLCYSSDHEKLKPQYLEELPGQLKQFSMFLGK 147
>3k8p_C DSL1, KLLA0C02695P; intracellular trafficking, DSL1 complex,
multisubunit tethering complex, snare proteins; 2.60A
{Kluyveromyces lactis}
Length = 357
Score = 28.9 bits (64), Expect = 8.6
Identities = 11/62 (17%), Positives = 24/62 (38%)
Query: 467 DVAKVEKKDTPEESKDVSSESEEESDLSDVENDEVVDKKEKNEDSNNKSEESSDDDDDDW 526
+ + E + E+ + D+E E + K+ +S +E D+ D W
Sbjct: 24 SIPEEEYHELVSVQFKTDGGKYEKGEKQDLELSEKKTENGKDTESWGWNENQDSDEHDGW 83
Query: 527 EK 528
++
Sbjct: 84 DE 85
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 29.1 bits (65), Expect = 8.6
Identities = 14/109 (12%), Positives = 41/109 (37%), Gaps = 3/109 (2%)
Query: 436 KKKKFTKNKHDKKSSGQKKITNTVEQTE---APADVAKVEKKDTPEESKDVSSESEEESD 492
+K+ + + + G KK+ +T Q + E E++ + ++
Sbjct: 1910 EKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQ 1969
Query: 493 LSDVENDEVVDKKEKNEDSNNKSEESSDDDDDDWEKYQTGLNKRDKVLE 541
++++ + + + + + N + D EK + R++V +
Sbjct: 1970 AAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQ 2018
>3ay5_A Cyclin-D1-binding protein 1; dominant-negative helix-loop-helix
transcriptional regulator cycle; 2.50A {Homo sapiens}
Length = 360
Score = 28.7 bits (63), Expect = 9.6
Identities = 18/102 (17%), Positives = 40/102 (39%), Gaps = 4/102 (3%)
Query: 619 DQMQDIKLDVKEAPEVPTEHPQWEMSGEEDEGDEEMGGSDVSEFTTDEDV----EDDLKL 674
D ++D ++++A E + EE+ D DV F +++D+ +D +
Sbjct: 182 DFVKDAHEEMEQAVEESDPYSGLLNDTEENNSDNHNHEDDVLGFPSNQDLYWSEDDQELI 241
Query: 675 EPCAQLMLYLRPAAAPHAGRLMKNNSTNSSDRLRDLCSVGRR 716
PC L+ + + +N + +L D+ +
Sbjct: 242 IPCLALVRASKACLKKIRMLVAENGKKDQVAQLDDIVDISDE 283
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.132 0.384
Gapped
Lambda K H
0.267 0.0472 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 13,467,189
Number of extensions: 822232
Number of successful extensions: 2161
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2059
Number of HSP's successfully gapped: 97
Length of query: 904
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 802
Effective length of database: 3,853,851
Effective search space: 3090788502
Effective search space used: 3090788502
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 62 (28.3 bits)