RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12224
(904 letters)
>d2q0zx1 a.289.1.1 (X:33-208) Protein pro2281 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 176
Score = 121 bits (304), Expect = 3e-32
Identities = 51/199 (25%), Positives = 99/199 (49%), Gaps = 25/199 (12%)
Query: 143 LKRVLMILGASLEFDRRFNSEIIERPSDEIEVPQLIRQIPNLGEKNRERPLYHKYSIKAR 202
++ ++ I+ + E++ I R ++ + QL +++P+ P ++ +K
Sbjct: 3 VRGLIEIISNAAEYE-----NIPIRHHEDNLLRQLAQKVPH----KLNNPKFNDPHVKTN 53
Query: 203 ALIYAHLSNMQLTSETLEADRMYIVKKCPYLLQEMVTCISQLILLAYAQRVPRLIHIETL 262
L+ AHLS MQL++E L++D I+ K L+Q V +S L+ A
Sbjct: 54 LLLQAHLSRMQLSAE-LQSDTEEILSKAIRLIQACVDVLSSNGWLSPAL----------- 101
Query: 263 ENVMKLCPMIVQGMWDFKNPLLQLPYVTDDHLKHFICKKRYIKSLQQFAQMKNEERRSVV 322
M+L M+ Q MW + L QLP+ T +H+K C + ++S+ +M++EER +++
Sbjct: 102 -AAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKR--CTDKGVESVFDIMEMEDEERNALL 158
Query: 323 KFMNDEQYSDMLKVLGNMP 341
+ + D Q +D+ + P
Sbjct: 159 Q-LTDSQIADVARFCNRYP 176
>d2q0zx2 b.1.18.22 (X:209-322) Protein pro2281 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 114
Score = 104 bits (261), Expect = 3e-27
Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 4/109 (3%)
Query: 524 DDWEKYQTGLNKRDKV-LEGRSKQSHSVHCPRFPEDKQEFWWIYISDRKSRTLLTSPYHI 582
D + ++G V LE + + V P FP+ ++E WW+ I D KS +L++
Sbjct: 9 VDKDSIRSGGPVVVLVQLEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKR-- 66
Query: 583 TELVDQEQVQLKFTAPRWPGVYTFSVCLRCDSYLGFDQMQDIKLDVKEA 631
L + +V+L F AP G + +++ D+Y+G DQ +DVKEA
Sbjct: 67 LTLQQKAKVKLDFVAP-ATGAHNYTLYFMSDAYMGCDQEYKFSVDVKEA 114
>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain
{Escherichia coli [TaxId: 562]}
Length = 75
Score = 49.2 bits (117), Expect = 3e-08
Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 11 PSGASEASIKKAYRKQSLILHPDKETGD---EKAFMKLTKAYQALTDEESRRNFEKYGNP 67
A E I+KAY++ ++ HPD+ GD E F ++ +AY+ LTD + R +++YG+
Sbjct: 12 SKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHA 71
>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId:
9913]}
Length = 98
Score = 49.2 bits (117), Expect = 5e-08
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 14 ASEASIKKAYRKQSLILHPDKETGD------EKAFMKLTKAYQALTDEESRRNF 61
+ +KK YRK L++HPDK TG + FM+L A+ ++ + +
Sbjct: 45 VTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 98
>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain
{Murine polyomavirus [TaxId: 10634]}
Length = 79
Score = 46.1 bits (109), Expect = 4e-07
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 14 ASEASIKKAYRKQSLILHPDKETGDEKAFMKLTKAYQALTDEESRRNFEKYG 65
+++AY++QSL+LHPDK G +L + E G
Sbjct: 25 GDFGRMQQAYKQQSLLLHPDK-GGSHALMQELNSLWGTFKTEVYNLRMNLGG 75
>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3
(J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 94
Score = 45.4 bits (107), Expect = 1e-06
Identities = 17/71 (23%), Positives = 40/71 (56%), Gaps = 11/71 (15%)
Query: 11 PSGASEASIKKAYRKQSLILHPDKETGD---------EKAFMKLTKAYQALTDEESRRNF 61
A+ + +K+ Y+K L+ HPDK++ D + F+++ +A++ L +EE+++ +
Sbjct: 25 DPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKY 84
Query: 62 EKYGNPDGPGA 72
+ + GP +
Sbjct: 85 DLQRS--GPSS 93
>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}
Length = 77
Score = 40.5 bits (94), Expect = 4e-05
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 11 PSGASEASIKKAYRKQSLILHPDKETGDE--KAFMKLTKAYQALTDEESRRNFEKYGN 66
GAS+ IK+AYR+Q+L HPDK + F ++ +AY L+D R F++YG
Sbjct: 12 ARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGE 69
>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain
{Escherichia coli [TaxId: 562]}
Length = 76
Score = 39.6 bits (92), Expect = 9e-05
Identities = 9/56 (16%), Positives = 18/56 (32%), Gaps = 8/56 (14%)
Query: 14 ASEASIKKAYRKQSLILHPDKETGDEKA--------FMKLTKAYQALTDEESRRNF 61
++ ++ HPDK +A + +A+Q L R +
Sbjct: 15 LDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEY 70
>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 36.6 bits (84), Expect = 0.001
Identities = 16/64 (25%), Positives = 19/64 (29%), Gaps = 13/64 (20%)
Query: 11 PSGASEASIKKAYRKQSLILHPD----KETGDEKAFMKLTKAYQAL---------TDEES 57
E+ KK R+ L HPD + F L L D S
Sbjct: 25 AWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFLDQNADRAS 84
Query: 58 RRNF 61
RR F
Sbjct: 85 RRTF 88
>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain
{Simian virus 40, Sv40 [TaxId: 10633]}
Length = 114
Score = 36.3 bits (83), Expect = 0.002
Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
Query: 14 ASEASIKKAYRKQSLILHPDKETGDEKAFMKLTKAYQALTDEESRRNFEKYGNPDGPGAM 73
+ ++KAY K+ + GDE+ K+ Y+ + D + +G +
Sbjct: 22 GNIPLMRKAYLKKCKE-FHPDKGGDEEKMKKMNTLYKKMEDGVKYAHQPDFGGFWDATEI 80
Query: 74 SFG 76
Sbjct: 81 PTY 83
>d1yz1a1 b.88.1.2 (A:1-172) Translationally controlled tumor protein
TCTP (histamine-releasing factor) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 172
Score = 26.6 bits (59), Expect = 9.7
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 301 KRYIKSLQQFAQMKNEERRSVVKFMNDEQYSDMLKVLGN 339
K Y+KS++ + + ER V FM + +L N
Sbjct: 93 KDYMKSIKGKLEEQRPER--VKPFMTGAA-EQIKHILAN 128
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.132 0.384
Gapped
Lambda K H
0.267 0.0657 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,314,313
Number of extensions: 160187
Number of successful extensions: 445
Number of sequences better than 10.0: 1
Number of HSP's gapped: 435
Number of HSP's successfully gapped: 17
Length of query: 904
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 810
Effective length of database: 1,116,976
Effective search space: 904750560
Effective search space used: 904750560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 57 (25.9 bits)