BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy12225
         (396 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q13435|SF3B2_HUMAN Splicing factor 3B subunit 2 OS=Homo sapiens GN=SF3B2 PE=1 SV=2
          Length = 895

 Score =  426 bits (1095), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 244/396 (61%), Positives = 294/396 (74%), Gaps = 36/396 (9%)

Query: 2   EMRASLQDKEEQKTLKSKMRERVRPKLGKIDIDYQKLHDAFFKWQTKPRLSIHGDLYYEG 61
           EMR +LQ+KEEQKT+KSKMRE+VRPK+GKIDIDYQKLHDAFFKWQTKP+L+IHGDLYYEG
Sbjct: 535 EMREALQEKEEQKTMKSKMREKVRPKMGKIDIDYQKLHDAFFKWQTKPKLTIHGDLYYEG 594

Query: 62  KEFETKLKEKKPGDLSAELRTALGMPVGPTAHKTFSRETVIPPPWLIAMQRYGPPPSYPN 121
           KEFET+LKEKKPGDLS ELR +LGMPVGP AHK       +PPPWLIAMQRYGPPPSYPN
Sbjct: 595 KEFETRLKEKKPGDLSDELRISLGMPVGPNAHK-------VPPPWLIAMQRYGPPPSYPN 647

Query: 122 LKIPGLNAPIPQGCSFGYHAGGWGKPPVDETGKPLYGDVFGTGGWGKPPVDETGKPLYGD 181
           LKIPGLN+PIP+ CSFGYHAGGW                      GKPPVDETGKPLYGD
Sbjct: 648 LKIPGLNSPIPESCSFGYHAGGW----------------------GKPPVDETGKPLYGD 685

Query: 182 VFGTSAETKTAEVNEEDIEKTAWGELESESEEESEEDDEEEEEEEEGEDESGLITPAE-G 240
           VFGT+A     +  EE+I++T WGELE   EE SEE++EEE +E++  DE+G ITPA+ G
Sbjct: 686 VFGTNAAEFQTKTEEEEIDRTPWGELEPSDEESSEEEEEEESDEDK-PDETGFITPADSG 744

Query: 241 LMTPSGITSVPAGLETPDSIELRKKKIESDMETNEAPQLFQVLTEKRPDKLGPGMMASTH 300
           L+TP G +SVPAG+ETP+ IELRKKKIE  M+ +E PQLF VL EKR   +G  MM STH
Sbjct: 745 LITPGGFSSVPAGMETPELIELRKKKIEEAMDGSETPQLFTVLPEKRTATVGGAMMGSTH 804

Query: 301 MYEVPGAGASAPGAPVKRTLPSSVELALDPSELDLVDTDAMAARYEQQMREQTSGLQKED 360
           +Y++    +    AP  +     VE+AL P EL+L D  AM  +YE+ +REQ + ++KED
Sbjct: 805 IYDMSTVMSRKGPAPELQ----GVEVALAPEELEL-DPMAMTQKYEEHVREQQAQVEKED 859

Query: 361 LSDMLAEHVARQKNKRKRQQTTQDNKQAKKYKEFKF 396
            SDM+AEH A+QK K+++ Q       +KKYKEFKF
Sbjct: 860 FSDMVAEHAAKQKQKKRKAQPQDSRGGSKKYKEFKF 895


>sp|Q9UUI3|SA145_SCHPO Pre-mRNA-splicing factor sap145 OS=Schizosaccharomyces pombe
           (strain 972 / ATCC 24843) GN=sap145 PE=1 SV=1
          Length = 601

 Score =  225 bits (573), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 143/339 (42%), Positives = 193/339 (56%), Gaps = 41/339 (12%)

Query: 1   MEMRASLQDKEEQKTLKSKMRERVRPKLGKIDIDYQKLHDAFFKWQTKPRLSIHGDLYYE 60
           ++MR ++ + E    L+ KMRERV+PK+GK+DIDYQKLHDAFF++QTKP L+  G+ Y+E
Sbjct: 261 VQMRNAVHENEADMPLRQKMRERVQPKMGKLDIDYQKLHDAFFRYQTKPVLTGFGECYFE 320

Query: 61  GKEFETKLKEKKPGDLSAELRTALGMPVGPTAHKTFSRETVIPPPWLIAMQRYGPPPSYP 120
           GKE E  +KEK+PGD+S ELR ALG+  G             PPPWL AMQRYGPPPSYP
Sbjct: 321 GKELEADVKEKRPGDISEELREALGIAPG------------APPPWLFAMQRYGPPPSYP 368

Query: 121 NLKIPGLNAPIPQGCSFGYHAGGWGKPPVDETGKPLYGDVFGTGGWGKPPVDE-TGKPL- 178
           +LKIPG+N PIP G  +G+H GGWGKPPVD+  +PLYGDVFG     KP +   TG P+ 
Sbjct: 369 DLKIPGVNCPIPTGAQWGFHPGGWGKPPVDQFNRPLYGDVFGN---VKPRIHAGTGSPVS 425

Query: 179 ---YGDVFGTSAETKTAEVNEEDIEKTAWGELESESEEESEEDDEEEEEEEEGEDESGLI 235
              +G++     E  + E   ED+E       E E+ EE +   E   + E+   E    
Sbjct: 426 TQHWGELEEFEEEESSEEEESEDVEYPTEEITERETIEEYQSASEPRSQREDLHAEP--- 482

Query: 236 TPAEGLMTPSGITSVPAGLETPDSIELRKKKIESDMETNEAPQLFQVLTEKRPDKLGPGM 295
                 +T    ++V       D++ELRK    S    N    L+QVL EK  +    G 
Sbjct: 483 ------LTYFNQSNVEV-----DNVELRKNTQPSSDAANR--DLYQVLPEKSTNI--SGF 527

Query: 296 MASTHMYEVPGAGASAPGAPVKRTLPSSV---ELALDPS 331
           M   H Y++P A  + P      ++ SS    ++AL+ S
Sbjct: 528 MGPQHQYDIPTAEDTLPQKRNAHSMLSSTNKGDVALNQS 566


>sp|Q02554|CUS1_YEAST Cold sensitive U2 snRNA suppressor 1 OS=Saccharomyces cerevisiae
           (strain ATCC 204508 / S288c) GN=CUS1 PE=1 SV=1
          Length = 436

 Score = 95.5 bits (236), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 59/145 (40%), Positives = 80/145 (55%), Gaps = 29/145 (20%)

Query: 2   EMRASL----QDKEEQKTLKSKMRERVRPKLGKIDIDYQKLHDAFFK----WQTKP-RLS 52
           +MR++L     D +++K+LK   R RV+PK+G +D+DY+KLHD FFK    W  KP  L 
Sbjct: 207 QMRSTLPQSGLDGQDEKSLKEASRARVQPKMGALDLDYKKLHDVFFKIGANW--KPDHLL 264

Query: 53  IHGDLYYEGKEF--ETKLK----EKKPGDLSAELRTALGMPVGPTAHKTFSRETVIPPPW 106
             GD+YYE +    ET  K     K+PG +S ELR  + +P G              PPW
Sbjct: 265 CFGDVYYENRNLFEETNWKRMVDHKRPGRISQELRAIMNLPEGQL------------PPW 312

Query: 107 LIAMQRYGPPPSYPNLKIPGLNAPI 131
            + M+  G P  YP+LKI GLN  I
Sbjct: 313 CMKMKDIGLPTGYPDLKIAGLNWDI 337


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.308    0.130    0.376 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 167,576,432
Number of Sequences: 539616
Number of extensions: 8547775
Number of successful extensions: 119358
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1239
Number of HSP's successfully gapped in prelim test: 884
Number of HSP's that attempted gapping in prelim test: 72924
Number of HSP's gapped (non-prelim): 21093
length of query: 396
length of database: 191,569,459
effective HSP length: 120
effective length of query: 276
effective length of database: 126,815,539
effective search space: 35001088764
effective search space used: 35001088764
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 62 (28.5 bits)