Query psy12225
Match_columns 396
No_of_seqs 233 out of 354
Neff 4.4
Searched_HMMs 46136
Date Fri Aug 16 22:01:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12225.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12225hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2330|consensus 100.0 4.3E-99 9E-104 754.8 15.9 299 1-353 201-500 (500)
2 COG5182 CUS1 Splicing factor 3 100.0 8.2E-51 1.8E-55 398.4 7.2 156 2-216 209-366 (429)
3 KOG2330|consensus 100.0 7.3E-39 1.6E-43 321.9 5.5 270 7-309 108-446 (500)
4 PF04037 DUF382: Domain of unk 100.0 8.4E-30 1.8E-34 222.0 3.6 64 1-64 66-129 (129)
5 smart00581 PSP proline-rich do 99.9 1.4E-22 3E-27 153.6 5.7 52 69-132 2-53 (54)
6 PF04046 PSP: PSP; InterPro: 99.8 3.2E-20 7E-25 137.8 5.3 48 72-131 1-48 (48)
7 COG5182 CUS1 Splicing factor 3 99.7 1.1E-18 2.3E-23 172.7 4.0 159 7-185 115-336 (429)
8 PF04037 DUF382: Domain of unk 99.3 9.6E-13 2.1E-17 115.5 1.4 85 33-121 4-118 (129)
9 KOG2673|consensus 97.8 1.7E-05 3.7E-10 82.5 3.4 52 57-121 167-218 (485)
10 smart00581 PSP proline-rich do 91.7 0.056 1.2E-06 41.8 0.3 29 127-155 17-45 (54)
11 PF04046 PSP: PSP; InterPro: 91.4 0.093 2E-06 39.6 1.1 31 127-157 13-43 (48)
12 PF15017 AF1Q: Drug resistance 46.0 11 0.00024 31.8 1.3 10 239-248 73-82 (87)
13 PF15086 UPF0542: Uncharacteri 34.6 51 0.0011 27.2 3.3 25 363-387 46-70 (74)
14 PTZ00415 transmission-blocking 24.8 48 0.001 41.3 2.3 6 76-81 77-82 (2849)
15 KOG4364|consensus 24.6 99 0.0021 35.1 4.5 15 336-350 669-683 (811)
16 PF06524 NOA36: NOA36 protein; 24.6 54 0.0012 33.2 2.3 41 208-248 274-314 (314)
17 PF04931 DNA_pol_phi: DNA poly 23.4 40 0.00087 38.0 1.3 10 334-343 727-736 (784)
18 PF02724 CDC45: CDC45-like pro 22.5 39 0.00085 37.3 1.0 11 321-331 293-303 (622)
No 1
>KOG2330|consensus
Probab=100.00 E-value=4.3e-99 Score=754.82 Aligned_cols=299 Identities=65% Similarity=1.114 Sum_probs=260.1
Q ss_pred ChhhhhhhhhhhhHHhHHHHHHhhCCCCCccCCchhhhhhhcCCCCCCCCccccccccccccchhhccccCCCCCCcHHH
Q psy12225 1 MEMRASLQDKEEQKTLKSKMRERVRPKLGKIDIDYQKLHDAFFKWQTKPRLSIHGDLYYEGKEFETKLKEKKPGDLSAEL 80 (396)
Q Consensus 1 ~~mr~~~~~~e~~~~lK~k~Rerv~pk~g~ldiDy~~lhDaffk~qtkP~l~~~gd~Yyegke~e~~~~~~~Pg~Ls~eL 80 (396)
++||++++|+|+.++||++||+|||||||+||||||+||||||+|||||.||+||++|||||||+++.++++||.||+||
T Consensus 201 ~emR~a~~e~e~~~sLk~kmRerv~PkmGkidiDyqkLhdaFFk~qtkp~lt~~Ge~yyegke~e~~~k~k~PG~iS~eL 280 (500)
T KOG2330|consen 201 QEMREALLEREAGKSLKEKMRERVRPKMGKIDIDYQKLHDAFFKWQTKPYLTKFGELYYEGKELEAMVKEKKPGDISDEL 280 (500)
T ss_pred HHHHHHHHhhhccccHHHHHHHhhCcccccccchHHHHHHHHHhcCCCcceeecceeeecchhHHHHHhhcCccchhHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCCCCcccccccCCCChHHHHhhhcCCCCCCCCcccCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCc
Q psy12225 81 RTALGMPVGPTAHKTFSRETVIPPPWLIAMQRYGPPPSYPNLKIPGLNAPIPQGCSFGYHAGGWGKPPVDETGKPLYGDV 160 (396)
Q Consensus 81 r~ALg~~~~~~~~k~~~re~~~Pppw~~~mq~~g~pPsyp~lkiPGLn~pip~g~~~g~~~g~wGkPP~de~~~plyGdv 160 (396)
|.||||+.| +||||||||||||||||||+|||||||||||+||+||||+|||| |||++|+||||||
T Consensus 281 r~aLgmp~g------------~pPPWl~aMqryGpPpsYPdlkIpGLNapIPeg~s~Gyh~gGWG--pVDe~g~PLygDV 346 (500)
T KOG2330|consen 281 RIALGMPVG------------TPPPWLIAMQRYGPPPSYPDLKIPGLNAPIPEGCSFGYHAGGWG--PVDEFGKPLYGDV 346 (500)
T ss_pred HHHhCCCCC------------CCChHHHHhhhcCCCCCCCcccCCCCCCCCCcccccccccCCCc--cccccCCccchhc
Confidence 999999998 99999999999999999999999999999999999999999999 8998888888888
Q ss_pred cCCCCCCCCCCCCCCCCcccccccccccccccccchhhhhhccccccCCCCccCCcccchhh-hhhccccccCCCCCCCC
Q psy12225 161 FGTGGWGKPPVDETGKPLYGDVFGTSAETKTAEVNEEDIEKTAWGELESESEEESEEDDEEE-EEEEEGEDESGLITPAE 239 (396)
Q Consensus 161 FG~gg~GKPPvDE~GrPLYGdVFG~~~~~~~~~~~~e~vek~~WGEL~~EeEEeeEEEEEEE-EeEEeeede~g~~tp~~ 239 (396)
||+... ..........+++.+||+|.++.++++||.+||| ++.++-.++.++++|++
T Consensus 347 fG~~~p----------------------~~~~~t~es~~~rn~wgel~~e~~E~~EEreeee~~d~~~~~e~gg~~dp~d 404 (500)
T KOG2330|consen 347 FGLNIP----------------------EHHNGTKESEIERNHWGELESEEEESSEEREEEEREDKNDASENGGAVDPAD 404 (500)
T ss_pred cccccc----------------------cccccccccccccccccccccccchhhhhhhhhhhhhhhhhhhccccCCccc
Confidence 885442 1122223445678999999986555554432222 22222345567888887
Q ss_pred CcccCCCccccCCCCCCCchhhhhccccccccCCCCCCCCeEeccccccCCCCCCCCCCcceeEccCCCCCCCCCCCCCC
Q psy12225 240 GLMTPSGITSVPAGLETPDSIELRKKKIESDMETNEAPQLFQVLTEKRPDKLGPGMMASTHMYEVPGAGASAPGAPVKRT 319 (396)
Q Consensus 240 Gl~TPsGl~SvpsGleTP~~idlrk~~~~s~~eg~etP~LYtVLpEk~~~~~~~~~~GS~h~Ydv~~~~~~~~~~~~~~~ 319 (396)
++||+||+|+|+|+|||+.|+|||..+. .++++|||||||+++++++++||||+|+|||+..++.
T Consensus 405 -~~~~~~Lts~ptgiEtpd~iELRK~k~e-----e~~r~LYqVLpEK~t~~igg~mmgstH~Ydis~~~a~--------- 469 (500)
T KOG2330|consen 405 -DIVPSGLTSFPTGIETPDAIELRKKKRE-----EETRALYQVLPEKRTSRIGGTMMGSTHTYDISTGTAD--------- 469 (500)
T ss_pred -cccccccccCCccccChhHHHHHhhccc-----cccHHHHHhccccccccccceeeccceEEeccccccc---------
Confidence 9999999999999999999999998865 4678999999999999888899999999999875443
Q ss_pred CCCCeeeecCcccccCCCHHHHHHHHHHHHHHhc
Q psy12225 320 LPSSVELALDPSELDLVDTDAMAARYEQQMREQT 353 (396)
Q Consensus 320 ~~~~v~v~l~p~~l~~~~~~~~~~~ye~~~~~~~ 353 (396)
+..||+|||||++|+. +..+| +||+++++|+
T Consensus 470 k~~GV~~sL~Peeld~-d~~~l--~yee~~reqk 500 (500)
T KOG2330|consen 470 KTPGVEFSLDPEELDA-DGMAL--RYEEQRREQK 500 (500)
T ss_pred cCCCceeecChhhhcc-chhhH--HHHHHHhhcC
Confidence 2347999999999997 77788 9999999873
No 2
>COG5182 CUS1 Splicing factor 3b, subunit 2 [RNA processing and modification]
Probab=100.00 E-value=8.2e-51 Score=398.43 Aligned_cols=156 Identities=49% Similarity=0.834 Sum_probs=139.2
Q ss_pred hhhhhhhhhhhhHHhHHHHHHhhCCCCCccCCchhhhhhhcCCCCCCCCccccccccccccchhhccccCCCCCCcHHHH
Q psy12225 2 EMRASLQDKEEQKTLKSKMRERVRPKLGKIDIDYQKLHDAFFKWQTKPRLSIHGDLYYEGKEFETKLKEKKPGDLSAELR 81 (396)
Q Consensus 2 ~mr~~~~~~e~~~~lK~k~Rerv~pk~g~ldiDy~~lhDaffk~qtkP~l~~~gd~Yyegke~e~~~~~~~Pg~Ls~eLr 81 (396)
+||+++.+.|+.++||+++|+|||||||.|||||++||||||++|+||.|++||++||||++++...++++||.||.+||
T Consensus 209 qmR~~~~e~ea~msLre~~RervqPkmG~ldvDy~kLhdaFF~~g~kP~L~~fGe~y~e~~n~~~~vk~krPG~IS~eLr 288 (429)
T COG5182 209 QMRRMMREREAGMSLRERIRERVQPKMGGLDVDYRKLHDAFFSLGPKPYLSKFGEFYEEVDNDYRFVKKKRPGAISAELR 288 (429)
T ss_pred HHHHhhhhccccCcHHHHHHHhhCccccccchhHHHHHHHHHhcCCCcccccccceeeccchHHHHHhccCCcchHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999998999999999999999
Q ss_pred HHhCCCCCCCCCcccccccCCCChHHHHhhhcCCCCCCCCcccCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCcc
Q psy12225 82 TALGMPVGPTAHKTFSRETVIPPPWLIAMQRYGPPPSYPNLKIPGLNAPIPQGCSFGYHAGGWGKPPVDETGKPLYGDVF 161 (396)
Q Consensus 82 ~ALg~~~~~~~~k~~~re~~~Pppw~~~mq~~g~pPsyp~lkiPGLn~pip~g~~~g~~~g~wGkPP~de~~~plyGdvF 161 (396)
+||||++| +|||||++||+||+|||||+||||||| |++|+ ||||||
T Consensus 289 ealgi~~g------------~pPPWlf~Mq~~G~PpsYPDlkIpGlN--------W~~~p--------------L~Gdvy 334 (429)
T COG5182 289 EALGIDSG------------TPPPWLFNMQKHGMPPSYPDLKIPGLN--------WAPIP--------------LEGDVY 334 (429)
T ss_pred HHhCCCCC------------CCChHHHhhhhcCCCCCCccccCCCCC--------CCCcc--------------cccccc
Confidence 99999998 999999999999999999999999999 66664 899999
Q ss_pred C--CCCCCCCCCCCCCCCcccccccccccccccccchhhhhhccccccCCCCccCCc
Q psy12225 162 G--TGGWGKPPVDETGKPLYGDVFGTSAETKTAEVNEEDIEKTAWGELESESEEESE 216 (396)
Q Consensus 162 G--~gg~GKPPvDE~GrPLYGdVFG~~~~~~~~~~~~e~vek~~WGEL~~EeEEeeE 216 (396)
| +.+|+-|- .+.+-+++||+|.+-++++.+
T Consensus 335 G~~~p~~h~~~-------------------------~~~~~~~~~gel~~fe~ee~~ 366 (429)
T COG5182 335 GYQPPGWHEPL-------------------------FEVGPETAEGELLQFEAEEIY 366 (429)
T ss_pred cccCCCcCCcc-------------------------CCcCcchhhhhhhhccchhhc
Confidence 9 45564221 133456799999876554433
No 3
>KOG2330|consensus
Probab=100.00 E-value=7.3e-39 Score=321.86 Aligned_cols=270 Identities=33% Similarity=0.448 Sum_probs=203.4
Q ss_pred hhhhhhhHHhHHHHHHhhCCCCCccC-----CchhhhhhhcCC-------------CCCCCCccccccccccccchhhcc
Q psy12225 7 LQDKEEQKTLKSKMRERVRPKLGKID-----IDYQKLHDAFFK-------------WQTKPRLSIHGDLYYEGKEFETKL 68 (396)
Q Consensus 7 ~~~~e~~~~lK~k~Rerv~pk~g~ld-----iDy~~lhDaffk-------------~qtkP~l~~~gd~Yyegke~e~~~ 68 (396)
..+..+++.+|+|+|.-.||.+..|+ +|+++||||..+ .-++|+||++...|+.|| ++
T Consensus 108 ~~~~~eeklskrklRk~~r~svaeLK~~v~~pdvvE~~Dvta~dP~ll~~lK~~~n~VPVPrHW~~kr~yl~G~----rg 183 (500)
T KOG2330|consen 108 KDDRIEEKLSKRKLRKLLRPSVAELKQLVPYPDVVEWHDVTARDPKLLVHLKAYRNSVPVPRHWNSKRKYLSGK----RG 183 (500)
T ss_pred ccccchhhhhHHHHHHhhcccHHHHhhcCCccceeeeeccCCCChHHHHHhhhccCCCcCchhhhhhhhhhccc----cc
Confidence 33345789999999999999999999 999999999887 227899999999999999 99
Q ss_pred ccCCCCCCcH--------HHHHHhCCCCCCCCCcccccccCCCChHHH---------HhhhcCCCCCCCCc---------
Q psy12225 69 KEKKPGDLSA--------ELRTALGMPVGPTAHKTFSRETVIPPPWLI---------AMQRYGPPPSYPNL--------- 122 (396)
Q Consensus 69 ~~~~Pg~Ls~--------eLr~ALg~~~~~~~~k~~~re~~~Pppw~~---------~mq~~g~pPsyp~l--------- 122 (396)
.+++||+|++ +||+||...+...++|++|||+|+|+++.| |||++|++|.+..+
T Consensus 184 ~ekppfelP~~Ik~TgI~emR~a~~e~e~~~sLk~kmRerv~PkmGkidiDyqkLhdaFFk~qtkp~lt~~Ge~yyegke 263 (500)
T KOG2330|consen 184 IEKPPFELPDFIKKTGIQEMREALLEREAGKSLKEKMRERVRPKMGKIDIDYQKLHDAFFKWQTKPYLTKFGELYYEGKE 263 (500)
T ss_pred cCCCCccchHHHHhcCHHHHHHHHHhhhccccHHHHHHHhhCcccccccchHHHHHHHHHhcCCCcceeecceeeecchh
Confidence 9999999999 788888888889999999999999999965 99999999998774
Q ss_pred -------ccCC---------CCCCCCCCCCCCccCCCCCCCCCCCCCCC-------CCCCccC--CCCCCCCCCCCCCCC
Q psy12225 123 -------KIPG---------LNAPIPQGCSFGYHAGGWGKPPVDETGKP-------LYGDVFG--TGGWGKPPVDETGKP 177 (396)
Q Consensus 123 -------kiPG---------Ln~pip~g~~~g~~~g~wGkPP~de~~~p-------lyGdvFG--~gg~GKPPvDE~GrP 177 (396)
+.|| ||+|+.--++|+|.|+.||.||+|++++| +.||+|| ++||| |||++|+|
T Consensus 264 ~e~~~k~k~PG~iS~eLr~aLgmp~g~pPPWl~aMqryGpPpsYPdlkIpGLNapIPeg~s~Gyh~gGWG--pVDe~g~P 341 (500)
T KOG2330|consen 264 LEAMVKEKKPGDISDELRIALGMPVGTPPPWLIAMQRYGPPPSYPDLKIPGLNAPIPEGCSFGYHAGGWG--PVDEFGKP 341 (500)
T ss_pred HHHHHhhcCccchhHHHHHHhCCCCCCCChHHHHhhhcCCCCCCCcccCCCCCCCCCcccccccccCCCc--cccccCCc
Confidence 6888 88777666799999999999999999997 7799999 99999 99999999
Q ss_pred cccccccccccccccccchhhhhhccccccCCCCccCCcccchhhhhhccccccCCCCCCCCCcccCCCccccCCCCCCC
Q psy12225 178 LYGDVFGTSAETKTAEVNEEDIEKTAWGELESESEEESEEDDEEEEEEEEGEDESGLITPAEGLMTPSGITSVPAGLETP 257 (396)
Q Consensus 178 LYGdVFG~~~~~~~~~~~~e~vek~~WGEL~~EeEEeeEEEEEEEEeEEeeede~g~~tp~~Gl~TPsGl~SvpsGleTP 257 (396)
|||||||+ ..+....-.-+...--..|++.+++++|++||. +||+.+|. +......|.+||.. .-||+||.+
T Consensus 342 LygDVfG~----~~p~~~~~t~es~~~rn~wgel~~e~~E~~EEr-eeee~~d~-~~~~e~gg~~dp~d-~~~~~~Lts- 413 (500)
T KOG2330|consen 342 LYGDVFGL----NIPEHHNGTKESEIERNHWGELESEEEESSEER-EEEEREDK-NDASENGGAVDPAD-DIVPSGLTS- 413 (500)
T ss_pred cchhcccc----ccccccccccccccccccccccccccchhhhhh-hhhhhhhh-hhhhhccccCCccc-ccccccccc-
Confidence 99999998 333222111111112334566665333333332 22222222 12222347888754 224555543
Q ss_pred chhhhhccccccccCCCCCCCCeEeccccccCCCCCCCCCCcceeEccCCCC
Q psy12225 258 DSIELRKKKIESDMETNEAPQLFQVLTEKRPDKLGPGMMASTHMYEVPGAGA 309 (396)
Q Consensus 258 ~~idlrk~~~~s~~eg~etP~LYtVLpEk~~~~~~~~~~GS~h~Ydv~~~~~ 309 (396)
.+++.|||+++.+++.++.. ....+|+|.....
T Consensus 414 ------------~ptgiEtpd~iELRK~k~ee-------~~r~LYqVLpEK~ 446 (500)
T KOG2330|consen 414 ------------FPTGIETPDAIELRKKKREE-------ETRALYQVLPEKR 446 (500)
T ss_pred ------------CCccccChhHHHHHhhcccc-------ccHHHHHhccccc
Confidence 33577999999888876542 1235899876543
No 4
>PF04037 DUF382: Domain of unknown function (DUF382) ; InterPro: IPR007180 This domain is specific to the human splicing factor 3b subunit 2 and its orthologs.; GO: 0005634 nucleus
Probab=99.95 E-value=8.4e-30 Score=221.96 Aligned_cols=64 Identities=72% Similarity=1.194 Sum_probs=62.7
Q ss_pred ChhhhhhhhhhhhHHhHHHHHHhhCCCCCccCCchhhhhhhcCCCCCCCCccccccccccccch
Q psy12225 1 MEMRASLQDKEEQKTLKSKMRERVRPKLGKIDIDYQKLHDAFFKWQTKPRLSIHGDLYYEGKEF 64 (396)
Q Consensus 1 ~~mr~~~~~~e~~~~lK~k~Rerv~pk~g~ldiDy~~lhDaffk~qtkP~l~~~gd~Yyegke~ 64 (396)
++||+|+.++|+++|||||+|+|||||||+||||||+||||||+|||||.|++|||+|||||||
T Consensus 66 ~emR~~~~e~e~~~slKqk~RervqPKmGkldIDYq~LhdAFFk~qtKP~l~~~Gd~YyEgkef 129 (129)
T PF04037_consen 66 EEMRQALPEKEDEKSLKQKQRERVQPKMGKLDIDYQKLHDAFFKFQTKPKLTKFGDLYYEGKEF 129 (129)
T ss_pred HHHHHHhhcccchhhHHHHHHHHhCcccCcccccHHHHHHHHHhccCCCCcccccceeeccccC
Confidence 4899999999999999999999999999999999999999999999999999999999999986
No 5
>smart00581 PSP proline-rich domain in spliceosome associated proteins.
Probab=99.87 E-value=1.4e-22 Score=153.64 Aligned_cols=52 Identities=69% Similarity=1.283 Sum_probs=50.1
Q ss_pred ccCCCCCCcHHHHHHhCCCCCCCCCcccccccCCCChHHHHhhhcCCCCCCCCcccCCCCCCCC
Q psy12225 69 KEKKPGDLSAELRTALGMPVGPTAHKTFSRETVIPPPWLIAMQRYGPPPSYPNLKIPGLNAPIP 132 (396)
Q Consensus 69 ~~~~Pg~Ls~eLr~ALg~~~~~~~~k~~~re~~~Pppw~~~mq~~g~pPsyp~lkiPGLn~pip 132 (396)
++++||.||++||+||||.++ +|||||++||++|+|||||+++|||||++||
T Consensus 2 ~~~kPG~lS~~LR~ALG~~~~------------~pPPWl~~Mq~~G~PPsYp~l~ipglna~ip 53 (54)
T smart00581 2 KHFKPGRISDELREALGLPPG------------QPPPWLYRMRRLGYPPGYPRLKIPGLNAPIP 53 (54)
T ss_pred CCccCCcCCHHHHHHcCCCCC------------CCChHHHHHHHHCCCCCCcccccCCCCCCCC
Confidence 578999999999999999987 8999999999999999999999999999998
No 6
>PF04046 PSP: PSP; InterPro: IPR006568 PSP is a proline-rich domain of unknown function found in spliceosome associated proteins.
Probab=99.80 E-value=3.2e-20 Score=137.83 Aligned_cols=48 Identities=71% Similarity=1.261 Sum_probs=46.4
Q ss_pred CCCCCcHHHHHHhCCCCCCCCCcccccccCCCChHHHHhhhcCCCCCCCCcccCCCCCCC
Q psy12225 72 KPGDLSAELRTALGMPVGPTAHKTFSRETVIPPPWLIAMQRYGPPPSYPNLKIPGLNAPI 131 (396)
Q Consensus 72 ~Pg~Ls~eLr~ALg~~~~~~~~k~~~re~~~Pppw~~~mq~~g~pPsyp~lkiPGLn~pi 131 (396)
|||+||++||+||||.++ +|||||++||++|+||+|++++|||+|++|
T Consensus 1 kPG~lS~~LR~ALg~~~~------------~~PPwl~~M~~~G~PP~y~~~ki~g~n~~i 48 (48)
T PF04046_consen 1 KPGKLSDELREALGMQEN------------DPPPWLYRMRRLGYPPGYPDLKIPGLNAPI 48 (48)
T ss_pred CCcccCHHHHHHcCCCCC------------CCChHHHHHHhcCCCCCCccccccCCCCCC
Confidence 799999999999999987 899999999999999999999999999986
No 7
>COG5182 CUS1 Splicing factor 3b, subunit 2 [RNA processing and modification]
Probab=99.73 E-value=1.1e-18 Score=172.72 Aligned_cols=159 Identities=24% Similarity=0.346 Sum_probs=132.5
Q ss_pred hhhhhhhHHhHHHHHHhhCCCCCccC-----CchhhhhhhcCCC-------------CCCCCccccccccccccchhhcc
Q psy12225 7 LQDKEEQKTLKSKMRERVRPKLGKID-----IDYQKLHDAFFKW-------------QTKPRLSIHGDLYYEGKEFETKL 68 (396)
Q Consensus 7 ~~~~e~~~~lK~k~Rerv~pk~g~ld-----iDy~~lhDaffk~-------------qtkP~l~~~gd~Yyegke~e~~~ 68 (396)
++.-.++..++||.|.-.|+.+.+|+ +++.+||||...+ -++|+||....-|+.|. ++
T Consensus 115 ~~~~~ee~ls~~k~Rk~~~~~~~qLK~~vpyp~I~Ew~D~~~~dP~~l~~~K~~~N~VPVPrHW~sk~~ylsg~----~~ 190 (429)
T COG5182 115 MKPYREESLSRQKKRKALQHRYEQLKLVVPYPEIFEWEDATCPDPMSLNRMKGCSNGVPVPRHWRSKSRYLSGH----GY 190 (429)
T ss_pred cCccchhhhHHHHHHHHhhhhHHHHhccCCccceeeeecCCCCChhhhhhhccCCCCCCCchhhhhhhhccccc----cc
Confidence 33345678899999999999999998 8999999998772 26899999999999999 99
Q ss_pred ccCCCCCCcHHHHHHhCCC---------CCCCCCcccccccCCCChHHH---------HhhhcCCCCCCCCc--------
Q psy12225 69 KEKKPGDLSAELRTALGMP---------VGPTAHKTFSRETVIPPPWLI---------AMQRYGPPPSYPNL-------- 122 (396)
Q Consensus 69 ~~~~Pg~Ls~eLr~ALg~~---------~~~~~~k~~~re~~~Pppw~~---------~mq~~g~pPsyp~l-------- 122 (396)
..++|++|+.-++ ++||+ +...++++.+||+|+|+|+.+ +||+||++|-+..+
T Consensus 191 ~~~r~felP~~I~-~TgI~qmR~~~~e~ea~msLre~~RervqPkmG~ldvDy~kLhdaFF~~g~kP~L~~fGe~y~e~~ 269 (429)
T COG5182 191 HKPRPFELPRHII-GTGIPQMRRMMREREAGMSLRERIRERVQPKMGGLDVDYRKLHDAFFSLGPKPYLSKFGEFYEEVD 269 (429)
T ss_pred CCCCcccchHHHh-hcChHHHHHhhhhccccCcHHHHHHHhhCccccccchhHHHHHHHHHhcCCCcccccccceeeccc
Confidence 9999999999666 66665 667899999999999999944 99999999955553
Q ss_pred --------ccCC---------CCCCCCCC--CCCCccCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCcccccc
Q psy12225 123 --------KIPG---------LNAPIPQG--CSFGYHAGGWGKPPVDETGKPLYGDVFGTGGWGKPPVDETGKPLYGDVF 183 (396)
Q Consensus 123 --------kiPG---------Ln~pip~g--~~~g~~~g~wGkPP~de~~~plyGdvFG~gg~GKPPvDE~GrPLYGdVF 183 (396)
+.|| || |++| ++|+|.|+.+|.||+|+.++|+==| |+= -|||||||
T Consensus 270 n~~~~vk~krPG~IS~eLrealg--i~~g~pPPWlf~Mq~~G~PpsYPDlkIpGlN------W~~-------~pL~Gdvy 334 (429)
T COG5182 270 NDYRFVKKKRPGAISAELREALG--IDSGTPPPWLFNMQKHGMPPSYPDLKIPGLN------WAP-------IPLEGDVY 334 (429)
T ss_pred hHHHHHhccCCcchHHHHHHHhC--CCCCCCChHHHhhhhcCCCCCCccccCCCCC------CCC-------cccccccc
Confidence 5888 77 5556 5999999999999999999995322 531 25999999
Q ss_pred cc
Q psy12225 184 GT 185 (396)
Q Consensus 184 G~ 185 (396)
|.
T Consensus 335 G~ 336 (429)
T COG5182 335 GY 336 (429)
T ss_pred cc
Confidence 97
No 8
>PF04037 DUF382: Domain of unknown function (DUF382) ; InterPro: IPR007180 This domain is specific to the human splicing factor 3b subunit 2 and its orthologs.; GO: 0005634 nucleus
Probab=99.27 E-value=9.6e-13 Score=115.49 Aligned_cols=85 Identities=26% Similarity=0.264 Sum_probs=75.3
Q ss_pred CchhhhhhhcCC-------------CCCCCCccccccccccccchhhccccCCCCCCcH--------HHHHHhCCCCCCC
Q psy12225 33 IDYQKLHDAFFK-------------WQTKPRLSIHGDLYYEGKEFETKLKEKKPGDLSA--------ELRTALGMPVGPT 91 (396)
Q Consensus 33 iDy~~lhDaffk-------------~qtkP~l~~~gd~Yyegke~e~~~~~~~Pg~Ls~--------eLr~ALg~~~~~~ 91 (396)
+|+++|||+... .-++|.||+..+.|+.|| |+.+++|++|++ +||+|+-..+...
T Consensus 4 PevVE~~D~~a~DP~lLv~lKs~rNtVPVP~HW~~Kr~YL~gk----rg~eKppf~LP~~I~~TgI~emR~~~~e~e~~~ 79 (129)
T PF04037_consen 4 PEVVEWHDVTAPDPRLLVHLKSYRNTVPVPRHWSQKRKYLQGK----RGIEKPPFQLPDFIKDTGIEEMRQALPEKEDEK 79 (129)
T ss_pred CceEEeecCCCCChHHHHHHHhcCCCCCCCcchhhhhhhhccc----ccccCCCCcCCHHHHHHCcHHHHHHhhcccchh
Confidence 789999998887 226899999999999999 999999999999 6777777778889
Q ss_pred CCcccccccCCCChHHH---------HhhhcCCCCCCCC
Q psy12225 92 AHKTFSRETVIPPPWLI---------AMQRYGPPPSYPN 121 (396)
Q Consensus 92 ~~k~~~re~~~Pppw~~---------~mq~~g~pPsyp~ 121 (396)
++||+|||+++|+++.+ |||++|++|.+..
T Consensus 80 slKqk~RervqPKmGkldIDYq~LhdAFFk~qtKP~l~~ 118 (129)
T PF04037_consen 80 SLKQKQRERVQPKMGKLDIDYQKLHDAFFKFQTKPKLTK 118 (129)
T ss_pred hHHHHHHHHhCcccCcccccHHHHHHHHHhccCCCCccc
Confidence 99999999999999965 9999999998643
No 9
>KOG2673|consensus
Probab=97.76 E-value=1.7e-05 Score=82.45 Aligned_cols=52 Identities=40% Similarity=0.735 Sum_probs=44.9
Q ss_pred ccccccchhhccccCCCCCCcHHHHHHhCCCCCCCCCcccccccCCCChHHHHhhhcCCCCCCCC
Q psy12225 57 LYYEGKEFETKLKEKKPGDLSAELRTALGMPVGPTAHKTFSRETVIPPPWLIAMQRYGPPPSYPN 121 (396)
Q Consensus 57 ~Yyegke~e~~~~~~~Pg~Ls~eLr~ALg~~~~~~~~k~~~re~~~Pppw~~~mq~~g~pPsyp~ 121 (396)
.||.-- ...|..+.+||+||..+|.|||+.++ +||+|+..|.++|.||.|..
T Consensus 167 ry~~~t-eq~re~h~KPG~lS~~~R~al~l~~~------------d~P~~~yRMR~lGYPPg~L~ 218 (485)
T KOG2673|consen 167 RYYQDT-EQGREDHFKPGVLSGNTRSALGLSPG------------DPPEWKYRMRRLGYPPGYLR 218 (485)
T ss_pred eeeeec-chhhhcccCCcccchhHHHhhcCCCC------------CchHHHHHHhhccCCchhhh
Confidence 476544 23378889999999999999999987 99999999999999999954
No 10
>smart00581 PSP proline-rich domain in spliceosome associated proteins.
Probab=91.74 E-value=0.056 Score=41.75 Aligned_cols=29 Identities=28% Similarity=0.212 Sum_probs=23.4
Q ss_pred CCCCCCCCCCCCccCCCCCCCCCCCCCCC
Q psy12225 127 LNAPIPQGCSFGYHAGGWGKPPVDETGKP 155 (396)
Q Consensus 127 Ln~pip~g~~~g~~~g~wGkPP~de~~~p 155 (396)
|+++.-.-.+|.|.|+.+|.||+|.+.++
T Consensus 17 LG~~~~~pPPWl~~Mq~~G~PPsYp~l~i 45 (54)
T smart00581 17 LGLPPGQPPPWLYRMRRLGYPPGYPRLKI 45 (54)
T ss_pred cCCCCCCCChHHHHHHHHCCCCCCccccc
Confidence 66444333589999999999999999887
No 11
>PF04046 PSP: PSP; InterPro: IPR006568 PSP is a proline-rich domain of unknown function found in spliceosome associated proteins.
Probab=91.37 E-value=0.093 Score=39.65 Aligned_cols=31 Identities=19% Similarity=0.042 Sum_probs=23.8
Q ss_pred CCCCCCCCCCCCccCCCCCCCCCCCCCCCCC
Q psy12225 127 LNAPIPQGCSFGYHAGGWGKPPVDETGKPLY 157 (396)
Q Consensus 127 Ln~pip~g~~~g~~~g~wGkPP~de~~~ply 157 (396)
||+.-..-.+|.|.|+.+|.||.+++.++..
T Consensus 13 Lg~~~~~~PPwl~~M~~~G~PP~y~~~ki~g 43 (48)
T PF04046_consen 13 LGMQENDPPPWLYRMRRLGYPPGYPDLKIPG 43 (48)
T ss_pred cCCCCCCCChHHHHHHhcCCCCCCccccccC
Confidence 5544333358999999999999999888743
No 12
>PF15017 AF1Q: Drug resistance and apoptosis regulator
Probab=45.97 E-value=11 Score=31.83 Aligned_cols=10 Identities=50% Similarity=0.813 Sum_probs=6.4
Q ss_pred CCcccCCCcc
Q psy12225 239 EGLMTPSGIT 248 (396)
Q Consensus 239 ~Gl~TPsGl~ 248 (396)
.|-+|||.|-
T Consensus 73 gGWITPsNIk 82 (87)
T PF15017_consen 73 GGWITPSNIK 82 (87)
T ss_pred Cccccchhhh
Confidence 4777777553
No 13
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=34.56 E-value=51 Score=27.23 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHhHHHHhhhhhhhhh
Q psy12225 363 DMLAEHVARQKNKRKRQQTTQDNKQ 387 (396)
Q Consensus 363 dmva~~~~~~~~~rk~~~~~~~~~~ 387 (396)
-||..+.++||+|.||+..-..++.
T Consensus 46 K~ie~~ere~K~k~Kr~~~i~k~rr 70 (74)
T PF15086_consen 46 KAIEKEEREKKKKAKRQANIAKARR 70 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555666666666655443333
No 14
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=24.79 E-value=48 Score=41.29 Aligned_cols=6 Identities=33% Similarity=0.645 Sum_probs=2.5
Q ss_pred CcHHHH
Q psy12225 76 LSAELR 81 (396)
Q Consensus 76 Ls~eLr 81 (396)
|++++|
T Consensus 77 ~~~~i~ 82 (2849)
T PTZ00415 77 LGDAIR 82 (2849)
T ss_pred ccCcee
Confidence 344444
No 15
>KOG4364|consensus
Probab=24.64 E-value=99 Score=35.05 Aligned_cols=15 Identities=0% Similarity=0.071 Sum_probs=9.6
Q ss_pred CCHHHHHHHHHHHHH
Q psy12225 336 VDTDAMAARYEQQMR 350 (396)
Q Consensus 336 ~~~~~~~~~ye~~~~ 350 (396)
.+...|..-|.++.+
T Consensus 669 ns~~~ii~E~qE~~k 683 (811)
T KOG4364|consen 669 NSINDIIDEDQEASK 683 (811)
T ss_pred cchHHHHHHHHHHHH
Confidence 355666667777766
No 16
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=24.61 E-value=54 Score=33.23 Aligned_cols=41 Identities=24% Similarity=0.546 Sum_probs=0.0
Q ss_pred CCCCccCCcccchhhhhhccccccCCCCCCCCCcccCCCcc
Q psy12225 208 ESESEEESEEDDEEEEEEEEGEDESGLITPAEGLMTPSGIT 248 (396)
Q Consensus 208 ~~EeEEeeEEEEEEEEeEEeeede~g~~tp~~Gl~TPsGl~ 248 (396)
.++++++++++++||+++++++++++......|-..-+|.+
T Consensus 274 ddd~~d~d~d~d~eed~~d~~~e~~de~~~~~g~~~~~~~~ 314 (314)
T PF06524_consen 274 DDDDDDEDDDEDDEEDEDDEEEEEEDEEEENDGDTYADGYA 314 (314)
T ss_pred cccccccccccccccccccccccccccccccccccccccCC
No 17
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=23.38 E-value=40 Score=38.03 Aligned_cols=10 Identities=30% Similarity=0.451 Sum_probs=5.4
Q ss_pred cCCCHHHHHH
Q psy12225 334 DLVDTDAMAA 343 (396)
Q Consensus 334 ~~~~~~~~~~ 343 (396)
+.||.++|.+
T Consensus 727 ~~mdDe~m~~ 736 (784)
T PF04931_consen 727 EDMDDEQMMA 736 (784)
T ss_pred cccCHHHHHH
Confidence 3456666544
No 18
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=22.46 E-value=39 Score=37.35 Aligned_cols=11 Identities=9% Similarity=0.516 Sum_probs=5.4
Q ss_pred CCCeeeecCcc
Q psy12225 321 PSSVELALDPS 331 (396)
Q Consensus 321 ~~~v~v~l~p~ 331 (396)
+....|++.++
T Consensus 293 ~d~~~I~~~~e 303 (622)
T PF02724_consen 293 PDDMSIRFEEE 303 (622)
T ss_pred CCCceeeeccc
Confidence 34455555443
Done!