Query psy12225
Match_columns 396
No_of_seqs 233 out of 354
Neff 4.4
Searched_HMMs 29240
Date Fri Aug 16 22:01:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12225.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12225hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1oei_A Major prion protein; oc 31.4 32 0.0011 22.0 2.3 7 141-147 2-8 (26)
2 1eov_A ASPRS, aspartyl-tRNA sy 27.4 28 0.00097 35.7 2.5 74 33-118 376-452 (487)
3 1yfb_A Transition state regula 25.8 34 0.0012 25.4 2.1 17 74-90 24-40 (59)
4 2l66_A SSO7C4, transcriptional 22.7 45 0.0015 23.8 2.2 20 71-90 11-30 (53)
5 2riq_A Poly [ADP-ribose] polym 17.9 46 0.0016 29.7 1.6 97 2-104 33-145 (160)
6 2glw_A PHS018, 92AA long hypot 16.7 65 0.0022 25.9 2.1 23 68-90 56-78 (92)
7 3a5y_A GENX, putative lysyl-tR 15.7 1.2E+02 0.0041 29.6 4.1 84 22-117 218-313 (345)
8 3fyr_A Sporulation inhibitor S 14.0 2.2E+02 0.0076 20.6 4.1 37 333-373 3-39 (48)
9 3bbo_G Ribosomal protein L4; l 13.4 41 0.0014 32.8 0.0 29 211-239 265-293 (293)
10 3j21_k Acidic ribosomal protei 13.1 42 0.0014 33.0 0.0 23 212-234 309-331 (339)
No 1
>1oei_A Major prion protein; octapeptide repeats, structure, protein aggregation, PH-dependent conformation, brain, disease mutation; NMR {Homo sapiens} SCOP: j.90.1.1
Probab=31.44 E-value=32 Score=22.00 Aligned_cols=7 Identities=71% Similarity=2.072 Sum_probs=3.6
Q ss_pred CCCCCCC
Q psy12225 141 AGGWGKP 147 (396)
Q Consensus 141 ~g~wGkP 147 (396)
.|+||.|
T Consensus 2 gg~wgqp 8 (26)
T 1oei_A 2 GGGWGQP 8 (26)
T ss_dssp CSSSSST
T ss_pred CcccCCc
Confidence 3456554
No 2
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=27.40 E-value=28 Score=35.67 Aligned_cols=74 Identities=18% Similarity=0.218 Sum_probs=47.8
Q ss_pred CchhhhhhhcC-CC-CCCCCccccccccccccchhh-ccccCCCCCCcHHHHHHhCCCCCCCCCcccccccCCCChHHHH
Q psy12225 33 IDYQKLHDAFF-KW-QTKPRLSIHGDLYYEGKEFET-KLKEKKPGDLSAELRTALGMPVGPTAHKTFSRETVIPPPWLIA 109 (396)
Q Consensus 33 iDy~~lhDaff-k~-qtkP~l~~~gd~Yyegke~e~-~~~~~~Pg~Ls~eLr~ALg~~~~~~~~k~~~re~~~Pppw~~~ 109 (396)
.||-..|-+|| +. ...|.++..=|+|+.|.|+-. -.+...|-.+-..++ ++|+.+.. ..--|++.
T Consensus 376 ~dyP~~~~pfy~~~~~~dp~~~~~fDL~~~G~Ei~~G~~rl~d~~~q~~r~~-~~g~~~~~-----------~~~~~yl~ 443 (487)
T 1eov_A 376 DKFPLEIRPFYTMPDPANPKYSNSYDFFMRGEEILSGAQRIHDHALLQERMK-AHGLSPED-----------PGLKDYCD 443 (487)
T ss_dssp ECCBGGGSCTTBCBCSSCTTBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHH-HTTCCTTS-----------TTTHHHHH
T ss_pred ECCccccChhhcCcCCCCCCeEEEEEEEeCCEEEEeeEEecCCHHHHHHHHH-HcCCChhh-----------hhHHHHHH
Confidence 47777777875 32 245778888899999987642 122234444444555 67876431 12359999
Q ss_pred hhhcCCCCC
Q psy12225 110 MQRYGPPPS 118 (396)
Q Consensus 110 mq~~g~pPs 118 (396)
..+||.||.
T Consensus 444 al~yG~PPh 452 (487)
T 1eov_A 444 GFSYGCPPH 452 (487)
T ss_dssp HHTTCCCCE
T ss_pred HHhcCCCCC
Confidence 999999984
No 3
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=25.77 E-value=34 Score=25.44 Aligned_cols=17 Identities=29% Similarity=0.366 Sum_probs=14.5
Q ss_pred CCCcHHHHHHhCCCCCC
Q psy12225 74 GDLSAELRTALGMPVGP 90 (396)
Q Consensus 74 g~Ls~eLr~ALg~~~~~ 90 (396)
=.||.++|++|||.+|+
T Consensus 24 ItIPkeiR~~Lgi~~Gd 40 (59)
T 1yfb_A 24 VVIPIELRRTLGIAEKD 40 (59)
T ss_dssp EECCHHHHHHTTCCTTC
T ss_pred EEeCHHHHHHcCCCCCC
Confidence 35899999999999874
No 4
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=22.72 E-value=45 Score=23.79 Aligned_cols=20 Identities=15% Similarity=0.252 Sum_probs=15.7
Q ss_pred CCCCCCcHHHHHHhCCCCCC
Q psy12225 71 KKPGDLSAELRTALGMPVGP 90 (396)
Q Consensus 71 ~~Pg~Ls~eLr~ALg~~~~~ 90 (396)
+-==.||.++|++||+.+|.
T Consensus 11 kgqi~IPk~ir~~lgi~~Gd 30 (53)
T 2l66_A 11 NYQVTIPAKVRQKFQIKEGD 30 (53)
T ss_dssp SSCBCCCHHHHHHSCCCTTC
T ss_pred CCEEEeCHHHHHHcCcCCCC
Confidence 33346899999999999774
No 5
>2riq_A Poly [ADP-ribose] polymerase 1; Zn-binding domain, Zn ribbon, Zn finger, ADP-ribosylation, D damage, DNA repair, DNA-binding, glycosyltransferase; 1.70A {Homo sapiens} PDB: 2jvn_A
Probab=17.95 E-value=46 Score=29.72 Aligned_cols=97 Identities=15% Similarity=0.225 Sum_probs=53.6
Q ss_pred hhhhhhhhhhhhHHhHHHHHHhhCCCCCccCCchhhhhhh-cCCCCCCCCccccccccccccchh--------------h
Q psy12225 2 EMRASLQDKEEQKTLKSKMRERVRPKLGKIDIDYQKLHDA-FFKWQTKPRLSIHGDLYYEGKEFE--------------T 66 (396)
Q Consensus 2 ~mr~~~~~~e~~~~lK~k~Rerv~pk~g~ldiDy~~lhDa-ffk~qtkP~l~~~gd~Yyegke~e--------------~ 66 (396)
++|+.|.+.-....||+-++.-.|.-.|.-+-=+..+-|. +|= ...|.-.+.|.++|.|..|. +
T Consensus 33 ~~rD~L~~~ls~~eLk~lL~~N~q~~~g~~~~ll~r~ADgm~FG-al~~CP~C~G~l~y~~~~Y~C~G~isewtkC~~~t 111 (160)
T 2riq_A 33 NIKDELKKVCSTNDLKELLIFNKQQVPSGESAILDRVADGMVFG-ALLPCEECSGQLVFKSDAYYCTGDVTAWTKCMVKT 111 (160)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHHHC-EECCCTTTCCCEEEETTEEEECCEEETTEECCCEE
T ss_pred HHHHHHHhhCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhC-CCCCCCCCCCEEEEeCCeEEECCCCCCcccCcccC
Confidence 4677776433345577777765554333333223344443 231 12444456699999987543 3
Q ss_pred ccccCCCCCCcHHHHHH-hCCCCCCCCCcccccccCCCC
Q psy12225 67 KLKEKKPGDLSAELRTA-LGMPVGPTAHKTFSRETVIPP 104 (396)
Q Consensus 67 ~~~~~~Pg~Ls~eLr~A-Lg~~~~~~~~k~~~re~~~Pp 104 (396)
+-..+.|..+|++|++. + +. +.+.+-++|+.||
T Consensus 112 ~~p~R~pwkiP~~lk~~~f-L~----~~k~~~~~Ri~~~ 145 (160)
T 2riq_A 112 QTPNRKEWVTPKEFREISY-LK----KLKVKKQDRIFPP 145 (160)
T ss_dssp SSCCEECCCCCHHHHTHHH-HH----HTCCCCCCCCCCC
T ss_pred CCCCccCccCCHHHHhhHH-HH----hCCCCCcccccCC
Confidence 34456888999999866 3 22 1233445566555
No 6
>2glw_A PHS018, 92AA long hypothetical protein; RIFT barrel, bioinformatics, transcription; NMR {Pyrococcus horikoshii}
Probab=16.68 E-value=65 Score=25.88 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=17.0
Q ss_pred cccCCCCCCcHHHHHHhCCCCCC
Q psy12225 68 LKEKKPGDLSAELRTALGMPVGP 90 (396)
Q Consensus 68 ~~~~~Pg~Ls~eLr~ALg~~~~~ 90 (396)
...+-==.||.++|++|||.+|.
T Consensus 56 v~~kGqitIPkeiR~~lgi~~Gd 78 (92)
T 2glw_A 56 VGEQGSVIIPKALRDVIGIKPGE 78 (92)
T ss_dssp CCGGGEEECCHHHHHHHTCCTTC
T ss_pred ECcCceEECcHHHHHHcCCCCCC
Confidence 33344446799999999999873
No 7
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=15.70 E-value=1.2e+02 Score=29.60 Aligned_cols=84 Identities=21% Similarity=0.316 Sum_probs=0.0
Q ss_pred HhhCCCCCccC----CchhhhhhhcCCCC-CCCCccccccccccccchhhccccCCCCCCcH-------HHHHHhCCCCC
Q psy12225 22 ERVRPKLGKID----IDYQKLHDAFFKWQ-TKPRLSIHGDLYYEGKEFETKLKEKKPGDLSA-------ELRTALGMPVG 89 (396)
Q Consensus 22 erv~pk~g~ld----iDy~~lhDaffk~q-tkP~l~~~gd~Yyegke~e~~~~~~~Pg~Ls~-------eLr~ALg~~~~ 89 (396)
+.|.|++|..+ .||=..--+|.+.. ..|.++..=|+|+.|.|+-.-..+.-=+.+=. +.|+++|+...
T Consensus 218 ~~ve~~lg~~~p~fv~dyP~~~~~~~~~~~~~~~~a~~fDL~~~G~Ei~~G~~rl~d~~~q~~rf~~~~~~~~~~g~~~~ 297 (345)
T 3a5y_A 218 FGVEPNIGKEKPTFVYHFPASQASLAQISTEDHRVAERFEVYYKGIELANGFHELTDAREQQQRFEQDNRKRAARGLPQH 297 (345)
T ss_dssp HHTGGGSSSSSCEEEECCBGGGCTTBCBCSSCTTBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHcCCCCEEEEECCChhhChhhCCCCCCCCeEEEEEEEECCEEEeeeEEEeCCHHHHHHHHHHHHHHHHhcCCChh
Q ss_pred CCCCcccccccCCCChHHHHhhhcCCCC
Q psy12225 90 PTAHKTFSRETVIPPPWLIAMQRYGPPP 117 (396)
Q Consensus 90 ~~~~k~~~re~~~Pppw~~~mq~~g~pP 117 (396)
...-|++...+||.||
T Consensus 298 ------------~~d~~yl~al~yG~PP 313 (345)
T 3a5y_A 298 ------------PIDQNLIEALKVGMPD 313 (345)
T ss_dssp ------------CCCHHHHHHHHHCCCS
T ss_pred ------------hHHHHHHHHHhcCCCC
No 8
>3fyr_A Sporulation inhibitor SDA; helical hairpin, histidine kinase inhibitor, sporulation regulation, alternative initiation; 1.97A {Bacillus subtilis} SCOP: a.2.12.1 PDB: 1pv0_A 3d36_C*
Probab=13.97 E-value=2.2e+02 Score=20.64 Aligned_cols=37 Identities=8% Similarity=0.300 Sum_probs=0.0
Q ss_pred ccCCCHHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHH
Q psy12225 333 LDLVDTDAMAARYEQQMREQTSGLQKEDLSDMLAEHVARQK 373 (396)
Q Consensus 333 l~~~~~~~~~~~ye~~~~~~~~~~~~ed~sdmva~~~~~~~ 373 (396)
+..|+.+.|-..|..++.-+- ..||=+||.++..++.
T Consensus 3 M~~LSDe~LiesY~~A~el~L----~~dFI~LL~~Ei~RR~ 39 (48)
T 3fyr_A 3 MRKLSDELLIESYFKATEMNL----NRDFIELIENEIKRRS 39 (48)
T ss_dssp CTTSCHHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHH
T ss_pred hhhhcHHHHHHHHHHHHHhCC----CHHHHHHHHHHHHHcC
No 9
>3bbo_G Ribosomal protein L4; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=13.37 E-value=41 Score=32.80 Aligned_cols=29 Identities=45% Similarity=0.652 Sum_probs=0.0
Q ss_pred CccCCcccchhhhhhccccccCCCCCCCC
Q psy12225 211 SEEESEEDDEEEEEEEEGEDESGLITPAE 239 (396)
Q Consensus 211 eEEeeEEEEEEEEeEEeeede~g~~tp~~ 239 (396)
++++++|||+|+++|-+++.+++...|++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (293)
T 3bbo_G 265 EDEDEEEEEEEEGEEVDDGVEDGTPEPAE 293 (293)
T ss_dssp -----------------------------
T ss_pred cccccchhhhccccccccccccCCCCCCC
No 10
>3j21_k Acidic ribosomal protein P0 homolog; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=13.10 E-value=42 Score=32.99 Aligned_cols=23 Identities=52% Similarity=0.732 Sum_probs=0.0
Q ss_pred ccCCcccchhhhhhccccccCCC
Q psy12225 212 EEESEEDDEEEEEEEEGEDESGL 234 (396)
Q Consensus 212 EEeeEEEEEEEEeEEeeede~g~ 234 (396)
++++++++++||+|+++++++++
T Consensus 309 ~~~~~~ee~eeeeee~~~e~~~~ 331 (339)
T 3j21_k 309 EEKKEEKVEEEKEDEEASEEEAL 331 (339)
T ss_dssp -----------------------
T ss_pred cccccccccccccccccchhhHH
Done!